BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780350|ref|YP_003064763.1| hypothetical protein CLIBASIA_01175 [Candidatus Liberibacter asiaticus str. psy62] (431 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780350|ref|YP_003064763.1| hypothetical protein CLIBASIA_01175 [Candidatus Liberibacter asiaticus str. psy62] gi|254040027|gb|ACT56823.1| hypothetical protein CLIBASIA_01175 [Candidatus Liberibacter asiaticus str. psy62] Length = 431 Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/431 (100%), Positives = 431/431 (100%) Query: 1 MVGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD 60 MVGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD Sbjct: 1 MVGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD 60 Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII Sbjct: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL Sbjct: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF Sbjct: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ Sbjct: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT Sbjct: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII Sbjct: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 Query: 421 PLPEDHPIDSD 431 PLPEDHPIDSD Sbjct: 421 PLPEDHPIDSD 431 >gi|315122226|ref|YP_004062715.1| hypothetical protein CKC_02390 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495628|gb|ADR52227.1| hypothetical protein CKC_02390 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 431 Score = 624 bits (1610), Expect = e-177, Method: Compositional matrix adjust. Identities = 296/430 (68%), Positives = 360/430 (83%) Query: 1 MVGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD 60 M+ YLKI +++ FF YLIL MGL LV+ P+ A +LDEI ESYH+ V++RFD L+R D Sbjct: 1 MISYLKIINVVHRFFTYLILLMGLFLVKYPVRADILDEITKESYHANVDNRFDTLLSRPD 60 Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 +GIDS I+S ETI TEKAI FYQDI+SRGGW +L RPL LG+SSV VQ+LRERLII Sbjct: 61 IGIDSYAAIVSNETITNTEKAIVFYQDIVSRGGWQQLANRPLRLGDSSVLVQKLRERLII 120 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 SGDLD SKG S FD+YVESAVK FQ RHGL P G+VD +TL+A+NVP DLR+RQL+VNL Sbjct: 121 SGDLDSSKGFSSVFDSYVESAVKFFQARHGLFPDGVVDIATLKAINVPADLRLRQLRVNL 180 Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 +RI LL++KMG RYVL+NIP+AS+EAVEN KV LRS IVGR+DRQTPILHS+I+RIM Sbjct: 181 LRISNLLKRKMGSRYVLINIPSASMEAVENDKVALRSVAIVGRIDRQTPILHSKIDRIML 240 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NPYWVIPRSII+KD++ L+R+ P+YLK++NIH+I++KGKEV E+VDWNS + P+FIFRQ Sbjct: 241 NPYWVIPRSIIKKDLVELVRESPEYLKESNIHIINDKGKEVLPEDVDWNSADLPHFIFRQ 300 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 D GK NAMASTKIEFYS+NN+YMHDTPEP LF+ RFETSGCVRV+NIIDL+VWLLK+ Sbjct: 301 DSGKNNAMASTKIEFYSQNNSYMHDTPEPFLFSQTARFETSGCVRVKNIIDLNVWLLKNM 360 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 P WSR+ IEEV+KTRKTTPVKL EV +HFVYISAWS KD ++QFRDD+YGLDNV++ I Sbjct: 361 PGWSRHDIEEVIKTRKTTPVKLDKEVLIHFVYISAWSTKDLVVQFRDDVYGLDNVYIDSI 420 Query: 421 PLPEDHPIDS 430 PLP +P++S Sbjct: 421 PLPGKYPVNS 430 >gi|227821529|ref|YP_002825499.1| putative amidase [Sinorhizobium fredii NGR234] gi|227340528|gb|ACP24746.1| putative amidase [Sinorhizobium fredii NGR234] Length = 442 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/383 (51%), Positives = 272/383 (71%), Gaps = 3/383 (0%) Query: 35 VLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW 94 L E+IN +D+FD +R + S+ P+ +TI ++AI YQ I++ GGW Sbjct: 36 ALGELINSPRRGSWDDQFDAKASRTATAVLSNTPVFGPQTIGHVQQAIFDYQQIVAAGGW 95 Query: 95 PELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P++P L LG + SVQ+LR+RL++SGDL S G+S +FD+YV+ AVK FQ RHGL Sbjct: 96 PQVPQTGARLELGVTDPSVQQLRQRLMVSGDLPRSAGISSSFDSYVDGAVKRFQARHGLP 155 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G++ + +A+NV R+ QL+ NL+R++ + +G RYV+VNIPAA +EAVENG+ Sbjct: 156 ADGVIGEYSFKALNVDAATRLAQLETNLVRLQSM-SGDLGRRYVMVNIPAAYIEAVENGR 214 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V LR T IVG++DRQ+PIL+S+I ++ NPYW PRSI+QKD+M L+R+DP YL+ N I Sbjct: 215 VVLRHTAIVGKIDRQSPILNSKIYEVILNPYWTAPRSIVQKDIMPLMRKDPTYLERNAIR 274 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 ++D G EV E VDWN+ + PN +FRQDPGKINAM+STKI F++ ++ YMHDTP+ LF Sbjct: 275 LLDGSGNEVSPETVDWNAEKAPNLMFRQDPGKINAMSSTKINFHNEHSVYMHDTPQQGLF 334 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 N ++RFE+SGCVRV+N+ DL WLLK+TP WSR IE +KT TP+KLA EVPV+F Y Sbjct: 335 NKLMRFESSGCVRVQNVRDLSTWLLKETPGWSRQQIEATIKTGVNTPIKLAEEVPVYFTY 394 Query: 393 ISAWSPKDSIIQFRDDIYGLDNV 415 I+AWS KD ++QFRDDIY D Sbjct: 395 ITAWSAKDRVVQFRDDIYQRDGA 417 >gi|15964960|ref|NP_385313.1| hypothetical protein SMc01769 [Sinorhizobium meliloti 1021] gi|307301031|ref|ZP_07580800.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] gi|307317765|ref|ZP_07597203.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|15074139|emb|CAC45786.1| Hypothetical protein SMc01769 [Sinorhizobium meliloti 1021] gi|306896527|gb|EFN27275.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306903986|gb|EFN34572.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] Length = 443 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 201/383 (52%), Positives = 270/383 (70%), Gaps = 4/383 (1%) Query: 36 LDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWP 95 L+EIIN +D+FD +R + S+ P+ ETIA ++AI YQ I S GGWP Sbjct: 37 LNEIINSPRRGSWDDQFDAKASRTATAVLSNTPVFGPETIAHLQQAIFDYQQIASAGGWP 96 Query: 96 EL---PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 + + L +G + SVQ+LR+RL+ISGDL S G+S +FD+YV+ AVK FQ RHGL Sbjct: 97 MVTPASTQRLEIGVTDPSVQQLRQRLMISGDLPQSAGISSSFDSYVDGAVKRFQARHGLP 156 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G++ +L+AMNV R+ QL+ NL+R++ + +G RYV+VNIPAA +EAVENG+ Sbjct: 157 ADGVIGEYSLKAMNVDASTRLAQLETNLVRLQSM-SGDLGRRYVMVNIPAAYIEAVENGR 215 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V LR T IVG++DRQ+PIL+S+I ++ NPYW PRSIIQKD+M L+R+DP YL N I Sbjct: 216 VALRHTAIVGKIDRQSPILNSKIYEVILNPYWTAPRSIIQKDIMPLMRKDPTYLARNAIR 275 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 ++D G EV E +DW + + PN +FRQDPGKINAM+STKI F++ + YMHDTP+ LF Sbjct: 276 LLDGNGNEVSPETIDWQAEKAPNLMFRQDPGKINAMSSTKINFHNEHAVYMHDTPQQGLF 335 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 N ++RFE+SGCVRV+N+ DL WLLK+TP W+R IE +K+ TP+KLA EVPV+F Y Sbjct: 336 NKLMRFESSGCVRVQNVRDLSTWLLKETPGWARQQIEATIKSGVNTPIKLAEEVPVYFTY 395 Query: 393 ISAWSPKDSIIQFRDDIYGLDNV 415 I+AWS KD ++QFRDDIY D Sbjct: 396 ITAWSAKDRVVQFRDDIYQRDGA 418 >gi|150396039|ref|YP_001326506.1| peptidoglycan binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150027554|gb|ABR59671.1| Peptidoglycan-binding domain 1 protein [Sinorhizobium medicae WSM419] Length = 443 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 200/384 (52%), Positives = 271/384 (70%), Gaps = 4/384 (1%) Query: 35 VLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW 94 L+EIIN +D+FD +R + S+ P+ ETIA ++AI YQ I + GGW Sbjct: 36 ALNEIINSPRRGSWDDQFDAKASRTATAVLSNTPVFGPETIALLQQAILDYQQIAAAGGW 95 Query: 95 PEL---PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 P + + L LG + +VQ+LR+RL+ISGDL S G+S +FD+YV+ AVK FQ RHGL Sbjct: 96 PMVNPASTQRLELGVNDPAVQQLRQRLMISGDLPQSAGISPSFDSYVDGAVKRFQARHGL 155 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 G++ +L+A+NV R+ QL+ NL+R++ + +G RYV+VNIPAA +EAVENG Sbjct: 156 PADGVIGEYSLKALNVDASTRLAQLETNLVRLQSM-SGDLGRRYVMVNIPAAYIEAVENG 214 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 +V LR T IVG++DRQ+PIL+S+I ++ NPYW PRSIIQKD+M L+R+DP YL+ N I Sbjct: 215 RVALRHTAIVGKIDRQSPILNSKIYEVILNPYWTAPRSIIQKDIMPLMRKDPTYLERNAI 274 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 ++D G EV E +DW + + PN +FRQDPGKINAM+STKI F++ + YMHDTP+ L Sbjct: 275 RLLDGNGNEVSPETIDWQAEKAPNLMFRQDPGKINAMSSTKINFHNEHAVYMHDTPQQGL 334 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 FN ++RFE+SGCVRV+N+ DL WLLK+TP WSR IE +K+ TP+KLA EVPV+F Sbjct: 335 FNKLMRFESSGCVRVQNVRDLSTWLLKETPGWSRQQIEGTIKSGVNTPIKLAEEVPVYFT 394 Query: 392 YISAWSPKDSIIQFRDDIYGLDNV 415 YI+AWS KD ++QFRDDIY D Sbjct: 395 YITAWSAKDRVVQFRDDIYQRDGA 418 >gi|222085506|ref|YP_002544036.1| peptidoglycan binding protein [Agrobacterium radiobacter K84] gi|221722954|gb|ACM26110.1| peptidoglycan binding protein [Agrobacterium radiobacter K84] Length = 437 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 202/381 (53%), Positives = 271/381 (71%), Gaps = 4/381 (1%) Query: 36 LDEIINESYHSIVNDRFDNFLARVDMG-IDSDIPIISKETIAQTEKAIAFYQDILSRGGW 94 LD +IN +D+FD A + S+ PI+ +++ ++AIA YQ+I + GGW Sbjct: 40 LDALINNRARGNWDDQFDAKAAARTAAAVQSNTPILGPDSVPNIQQAIAQYQNIAANGGW 99 Query: 95 PELPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P++ + L LG + +VQ LR+ L+++GDL G+S AFD+YV+ AVK FQ RHGL Sbjct: 100 PQITPGDQKLQLGVTDGAVQALRQHLMVTGDLPREAGISSAFDSYVDGAVKRFQARHGLP 159 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 P G++ TL+AMN+P ++R++QL NL+R++ +G R+V+VNIPA +EAVE+G+ Sbjct: 160 PDGVLGDFTLKAMNIPANVRLQQLNTNLVRLQTF-PADLGRRHVMVNIPATRVEAVEDGQ 218 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V LR IVGR R T +++S+I ++ NPYW PRSII KD+M L+R+DP YL NNI Sbjct: 219 VALRHEAIVGRESRPTHLINSKIYEVILNPYWTAPRSIIIKDIMPLMRKDPTYLSKNNIR 278 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 ++D KG+EV E +DWNS + PN +FRQDPGK NAMASTKI FY+ NN YMHDTPE LF Sbjct: 279 LLDGKGQEVAPETIDWNSDKAPNLMFRQDPGKTNAMASTKINFYNPNNEYMHDTPEQGLF 338 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 N ++RF++SGCVRV+N+ DL WLL DTP W R HIE+V+ TR TP+KLATEVPV+FVY Sbjct: 339 NKLMRFDSSGCVRVQNVRDLATWLLTDTPGWPRQHIEQVISTRVNTPIKLATEVPVYFVY 398 Query: 393 ISAWSPKDSIIQFRDDIYGLD 413 ISAWS D I+QFRDDIY LD Sbjct: 399 ISAWSAADGIVQFRDDIYNLD 419 >gi|116251385|ref|YP_767223.1| hypothetical protein RL1618A [Rhizobium leguminosarum bv. viciae 3841] gi|115256033|emb|CAK07114.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 433 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 204/386 (52%), Positives = 272/386 (70%), Gaps = 9/386 (2%) Query: 34 SVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 S LD +IN +D+FD A R + S+ PI+ +++A ++AI YQ I + G Sbjct: 35 SALDTLINAPRRGNWDDQFDAKAASRTATAMVSNTPILGPQSVASAQQAIMQYQQIAAAG 94 Query: 93 GWPELPIRP----LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 GWPE + P L LG SS SVQ LR+RL I+GDL GLS AFD+YV+ AVK FQ R Sbjct: 95 GWPE--VNPGDQRLQLGVSSPSVQALRQRLAITGDLPREAGLSNAFDSYVDGAVKRFQAR 152 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL G++ TL+AMN+P D+R++QL N++R++ E +G R+++VNIPAA +EAV Sbjct: 153 HGLPADGVLGEFTLKAMNIPADVRLQQLNTNVVRLQTFPE-DLGRRHLMVNIPAAYVEAV 211 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 E+G V R T +VGR+ R T +++S+I ++ NPYW PRSI++KD+M L+R+DP YL+ Sbjct: 212 EDGSVATRHTAVVGRLSRPTHLVNSKIYEVILNPYWTAPRSIVEKDIMPLMRKDPTYLEK 271 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 N I ++D KG EV E VDWN E PN +FRQDPGKINAMASTKI FY++N YMHDTP+ Sbjct: 272 NAIRLLDGKGNEVAPETVDWNG-EAPNLMFRQDPGKINAMASTKINFYNKNGEYMHDTPQ 330 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LFN ++RFE+SGCVRV+N+ DL WLL++TP WSR +E+V+ T TP+KLA EVPV Sbjct: 331 QGLFNKLMRFESSGCVRVQNVRDLTNWLLRETPGWSRQQMEQVIATGVNTPIKLAAEVPV 390 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDN 414 +FVYISAW D I+QFRDDIY +D Sbjct: 391 YFVYISAWGMPDGIVQFRDDIYQMDG 416 >gi|209548779|ref|YP_002280696.1| peptidoglycan-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534535|gb|ACI54470.1| Peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 433 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 203/404 (50%), Positives = 280/404 (69%), Gaps = 6/404 (1%) Query: 15 FVYLILPMGLSLVEKPIHA-SVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPIISK 72 F+ +G+S + P A S +D +IN +D+FD A R + S+ PI+ Sbjct: 15 FLASAATVGVSAIAAPAFAQSAIDTLINAPRRGNWDDQFDAKAASRTASAVVSNTPILGP 74 Query: 73 ETIAQTEKAIAFYQDILSRGGWPEL--PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 +++A ++A+ YQ I + GGWPE+ + L LG S +VQ LR+RL I+GDL G+ Sbjct: 75 QSLASAQQAVMQYQQIAAAGGWPEVNPGDQKLQLGVSHPAVQALRQRLAITGDLPREAGM 134 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 S AFD+YV+ AVK FQ RHGL G++ TL+AMN+P D+R++QL N++R++ E Sbjct: 135 SSAFDSYVDGAVKRFQARHGLPSDGVLGEFTLKAMNIPADVRLQQLNTNIIRLQTFPE-D 193 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +G R+V+VNIPAA +EAVE+G V R T +VGR+ R T +++S+I ++ NPYW PRSI Sbjct: 194 LGRRHVMVNIPAAYVEAVEDGTVATRHTAVVGRLSRPTHLVNSKIYEVILNPYWTSPRSI 253 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 ++KD+M L+R+DP YL+ N I +ID KG EV E +DWN E PN +FRQDPGK NAMAS Sbjct: 254 VEKDIMPLMRKDPTYLEKNAIRLIDGKGNEVAPETIDWNG-EAPNLMFRQDPGKTNAMAS 312 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 TKI FY++N YMHDTP+ LFN ++RFE+SGCVRV+N+ DL WLL++TP W+R +E+ Sbjct: 313 TKINFYNKNGEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLSNWLLRETPGWNRQQMEQ 372 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 V+ + TPVKLATEVPV+FVYISAW D I+QFRDDIY +D Sbjct: 373 VIASGVNTPVKLATEVPVYFVYISAWGMPDGIVQFRDDIYQMDG 416 >gi|86357145|ref|YP_469037.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli CFN 42] gi|86281247|gb|ABC90310.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli CFN 42] Length = 433 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 202/384 (52%), Positives = 272/384 (70%), Gaps = 5/384 (1%) Query: 34 SVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 S LD +IN +D+FD A R + S+ PI+ +++A ++AI YQ I + G Sbjct: 35 SALDTLINAPRRGNWDDQFDAKAASRTATAVVSNTPILGPQSVASAQQAIMQYQQIAAAG 94 Query: 93 GWPEL--PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GWPE+ + L LG SS +VQ LR+RL I+GDL G+S AFD+YV+ AVK FQ RHG Sbjct: 95 GWPEVNPGDQRLQLGVSSPAVQVLRQRLAITGDLPREAGMSNAFDSYVDGAVKRFQARHG 154 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L G++ TL+AMN+P D+R++QL NL+R++ E +G R+++VNIPAA +EAVE+ Sbjct: 155 LPSDGVLGEFTLKAMNIPADVRLQQLNTNLVRLQTFPE-DLGRRHLMVNIPAAYVEAVED 213 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 G V R T +VGR+ R T +++S+I ++ NPYW PRSI++KD+M L+R+DP YL+ N Sbjct: 214 GSVATRHTAVVGRLSRPTHLVNSKIYEVILNPYWTAPRSIVEKDIMPLMRKDPTYLEKNA 273 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 I +ID KG EV E +DWN E PN FRQDPGKINAMASTKI FY++N YMHDTP+ Sbjct: 274 IRLIDGKGNEVSPETIDWNG-EAPNLQFRQDPGKINAMASTKINFYNKNGEYMHDTPQQG 332 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 LFN ++RFE+SGCVRV+N+ DL WLL++TP WSR +E+V+ + TP+KLATEVPV+F Sbjct: 333 LFNKLMRFESSGCVRVQNVRDLSTWLLRETPGWSRQQMEQVIASGVNTPIKLATEVPVYF 392 Query: 391 VYISAWSPKDSIIQFRDDIYGLDN 414 VYISAW D I+QFRDDIY +D Sbjct: 393 VYISAWGMPDGIVQFRDDIYQMDG 416 >gi|190891191|ref|YP_001977733.1| peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli CIAT 652] gi|190696470|gb|ACE90555.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli CIAT 652] gi|327192107|gb|EGE59084.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli CNPAF512] Length = 434 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 203/384 (52%), Positives = 271/384 (70%), Gaps = 5/384 (1%) Query: 34 SVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 S LD ++N +D+FD A R + S+ PI+ +++A ++AI YQ I + G Sbjct: 36 SALDGLLNAPRRGNWDDQFDAKAASRTASAVVSNTPILGPQSVASAQQAIMQYQQIAAAG 95 Query: 93 GWPEL--PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GWPE+ + L LG S +VQ LR+RL I+GDL G+S AFD+YV+ AVK FQ RHG Sbjct: 96 GWPEVNPGDQRLQLGVSHPAVQALRQRLAITGDLPREAGMSSAFDSYVDGAVKRFQARHG 155 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L G++ TL+AMN+P D+R++QL NL+R++ E +G R+V+VNIPAA +EAVE+ Sbjct: 156 LPSDGVLGEFTLKAMNIPADVRLQQLNTNLVRLQTFPE-DLGRRHVMVNIPAAYVEAVED 214 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 G V R T +VGR+ R T +++S+I ++ NPYW PRSI++KD+M L+R+DP YL+ N Sbjct: 215 GSVATRHTAVVGRLSRPTHLVNSKIYEVILNPYWTAPRSIVEKDIMPLMRKDPTYLEKNA 274 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 I +ID KG EV E VDWN E PN FRQDPGKINAMASTKI FY++N YMHDTP+ Sbjct: 275 IRLIDGKGNEVAPETVDWNG-EAPNLQFRQDPGKINAMASTKINFYNKNGEYMHDTPQQG 333 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 LFN ++RFE+SGCVRV+N+ DL WLL++TP WSR +E+V+ T TP+KLATEVPV+F Sbjct: 334 LFNKLMRFESSGCVRVQNVRDLTNWLLRETPGWSRQQMEQVIATGVNTPIKLATEVPVYF 393 Query: 391 VYISAWSPKDSIIQFRDDIYGLDN 414 VYISAW D I+QFRDDIY +D Sbjct: 394 VYISAWGMPDGIVQFRDDIYQMDG 417 >gi|241204000|ref|YP_002975096.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857890|gb|ACS55557.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 433 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 202/386 (52%), Positives = 272/386 (70%), Gaps = 9/386 (2%) Query: 34 SVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 S LD +IN +D+FD A R + S+ PI+ +++A ++AI YQ I + G Sbjct: 35 SALDTLINAPRRGNWDDQFDAKAASRTATAMVSNTPILGPQSVASAQQAIMQYQQIAAAG 94 Query: 93 GWPELPIRP----LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 GWPE + P L LG SS +VQ LR+RL I+GDL GLS AFD+YV+ AVK FQ R Sbjct: 95 GWPE--VNPGDQRLQLGVSSPAVQALRQRLAITGDLPREAGLSNAFDSYVDGAVKRFQAR 152 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL G++ TL+AMN+P D+R++QL N++R++ E +G R+++VNIPAA +EAV Sbjct: 153 HGLPADGVLGEFTLKAMNIPADVRLQQLNTNVVRLQTFPE-DLGRRHLMVNIPAAYVEAV 211 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 E+G V R T +VGR+ R T +++S+I ++ NPYW PRSI++KD+M L+R+DP YL+ Sbjct: 212 EDGSVATRHTAVVGRLSRPTHLVNSKIYEVILNPYWTAPRSIVEKDIMPLMRKDPTYLEK 271 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 N I ++D KG EV E +DWN E PN +FRQDPGK NAMASTKI FY++N YMHDTP+ Sbjct: 272 NAIRLLDGKGNEVAPETIDWNG-EAPNLMFRQDPGKTNAMASTKINFYNKNGEYMHDTPQ 330 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LFN ++RFE+SGCVRV+N+ DL WLL++TP W+R +E+V+ T TPVKLATEVPV Sbjct: 331 QGLFNKLMRFESSGCVRVQNVRDLSNWLLRETPGWNRQQMEQVIATGVNTPVKLATEVPV 390 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDN 414 +FVYISAW D I+QFRDDIY +D Sbjct: 391 YFVYISAWGMPDGIVQFRDDIYQMDG 416 >gi|222148202|ref|YP_002549159.1| hypothetical protein Avi_1609 [Agrobacterium vitis S4] gi|221735190|gb|ACM36153.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 410 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 194/381 (50%), Positives = 272/381 (71%), Gaps = 2/381 (0%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGG 93 S +DE+IN +D+FD +R + S+ P++S + + AI+ YQ I+++GG Sbjct: 4 SAVDELINARSRGNWDDQFDAQTSRAVASVTSNSPMLSATNLPNLQLAISAYQQIVAQGG 63 Query: 94 WPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 WP++ P L LG+ VQ+LR+RL+ISGDL G+S +FD YV+ AVK FQ RHGL Sbjct: 64 WPQVNPSVKLKLGSIDPVVQQLRQRLMISGDLGQEAGMSNSFDTYVDGAVKRFQARHGLP 123 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G + TL+AMN+ D+R+ QL NL+R++ + +G RYV+VNIP+ S+EAVEN + Sbjct: 124 TDGALGEYTLKAMNISADVRLNQLNTNLVRLQAM-SGDLGNRYVMVNIPSMSIEAVENDR 182 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V LR+ +VGR+DR T ++S+I ++ NPYW PRSI++KD++ L+R+DP YL NNI Sbjct: 183 VALRTNAVVGRIDRPTHSINSKIYEVILNPYWTAPRSIVEKDIVPLMRKDPTYLTRNNIR 242 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 + D KG+EV E VDWN+P+ PN +FRQDPGKINAMASTKI F++ NN Y+HDTP+ LF Sbjct: 243 LFDGKGQEVAPETVDWNAPKAPNLMFRQDPGKINAMASTKINFHNPNNEYLHDTPQQGLF 302 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 N ++RFE+SGC+RV+N+ DL WLL+DTP W+R IE V+ TR+ +KL+ EVPV+ VY Sbjct: 303 NKLMRFESSGCMRVQNVRDLITWLLRDTPGWNRQEIERVISTRQNNVIKLSQEVPVYIVY 362 Query: 393 ISAWSPKDSIIQFRDDIYGLD 413 I+AWS KD+++QFRDDIY D Sbjct: 363 ITAWSAKDNVVQFRDDIYKRD 383 >gi|15888502|ref|NP_354183.1| hypothetical protein Atu1164 [Agrobacterium tumefaciens str. C58] gi|15156204|gb|AAK86968.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 443 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 192/379 (50%), Positives = 274/379 (72%), Gaps = 3/379 (0%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE 96 ++++ S +D+FD +R +G+ S+ P++ +E ++AI YQ I+ GGWP+ Sbjct: 38 NDLMGSSRRGNWDDQFDANTSRSAVGVVSNNPVLGREAPVYMQQAIMQYQQIVQNGGWPD 97 Query: 97 LPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +P + L +G S SVQ LR+RL++SGDL G+S AFD+YV+ A+K FQ RHGL Sbjct: 98 VPTSQQRLQIGVSDPSVQALRQRLMVSGDLPREAGISSAFDSYVDGALKRFQARHGLPAD 157 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G+ T +A+NV +R+ QLQ NL+RI+ + +G R+++VNIPAA++EAVEN +V Sbjct: 158 GVSGEYTTKALNVSAQIRLAQLQTNLVRIQSM-SGDLGQRHMMVNIPAAAIEAVENERVV 216 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 LR+T +VGR R T +++S++ ++ NPYW PRSI++KD++ L+++DP YL+ NNI +I Sbjct: 217 LRNTAVVGRASRPTHVINSKVYEVILNPYWTAPRSIVEKDIVPLMQKDPTYLERNNIRLI 276 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 D KG+EV VDW +P+ PN +FRQDPGKINAM+STKI F++ NN YMHDTP+ LFN Sbjct: 277 DGKGQEVSPTTVDWFAPKAPNLMFRQDPGKINAMSSTKINFHNPNNEYMHDTPQQGLFNK 336 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 ++RFE+SGCVRV+N+ DL WLL+DTP WSR +E V+ +R TP+KLA EVPV+FVYI+ Sbjct: 337 LMRFESSGCVRVQNVRDLTSWLLRDTPGWSRQEMERVIASRVNTPIKLAQEVPVYFVYIT 396 Query: 395 AWSPKDSIIQFRDDIYGLD 413 AWS KD ++QFRDDIYG D Sbjct: 397 AWSAKDGVVQFRDDIYGKD 415 >gi|325292539|ref|YP_004278403.1| hypothetical protein AGROH133_05364 [Agrobacterium sp. H13-3] gi|325060392|gb|ADY64083.1| hypothetical protein AGROH133_05364 [Agrobacterium sp. H13-3] Length = 443 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 193/379 (50%), Positives = 274/379 (72%), Gaps = 3/379 (0%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE 96 ++++ S +D+FD +R +G+ S+ P++ +E ++AI YQ I+ GGWP+ Sbjct: 38 NDLMGSSRRGNWDDQFDANSSRSAVGVVSNNPVLGREAPVYMQQAIMQYQQIVQNGGWPD 97 Query: 97 LPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +P+ + L +G S SVQ LR+RL++SGDL G+S AFD+YV+ A+K FQ RHGL Sbjct: 98 VPVTQQRLQIGVSDPSVQALRQRLMVSGDLPREAGISSAFDSYVDGALKRFQARHGLPAD 157 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G+ T +A+NV +R+ QLQ NL+RI+ + +G R+++VNIPAA++EAVEN +V Sbjct: 158 GVSGEYTTKALNVSAQIRLAQLQTNLVRIQSM-SGDLGQRHLMVNIPAAAIEAVENERVV 216 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 LR+T +VGR R T +++S+I ++ NPYW PRSI++KD++ L+++DP YL+ NNI +I Sbjct: 217 LRNTAVVGRASRPTHVINSKIYEVILNPYWTAPRSIVEKDIVPLMQKDPTYLERNNIRLI 276 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 D KG+EV VDW +P+ PN +FRQDPGKINAM+STKI F++ NN YMHDTP+ LFN Sbjct: 277 DGKGQEVSPTAVDWFAPKAPNLMFRQDPGKINAMSSTKINFHNPNNEYMHDTPQQGLFNK 336 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 ++RFE+SGCVRV+N+ DL WLL+DTP WSR +E V+ TR TP+KLA EVPV+FVYI+ Sbjct: 337 LMRFESSGCVRVQNVRDLTSWLLRDTPGWSRQEMERVIATRVNTPIKLAQEVPVYFVYIT 396 Query: 395 AWSPKDSIIQFRDDIYGLD 413 AWS KD ++QFRDDIY D Sbjct: 397 AWSAKDGVVQFRDDIYEKD 415 >gi|218515859|ref|ZP_03512699.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli 8C-3] Length = 372 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/354 (55%), Positives = 257/354 (72%), Gaps = 8/354 (2%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP----LHLGNSSVSVQRLRERLII 120 S+ PI+ +++A ++AI YQ I + GGWPE + P L LG S +VQ LR+RL I Sbjct: 6 SNTPILGPQSVASAQQAIMQYQQIAAAGGWPE--VNPGDQRLQLGVSHPAVQALRQRLAI 63 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 +GDL G+S AFD+YV+ AVK FQ RHGL G++ TL+AMN+P D+R++QL NL Sbjct: 64 TGDLPREAGMSSAFDSYVDGAVKRFQARHGLPSDGVLGEFTLKAMNIPADVRLQQLNTNL 123 Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 +R++ E +G R+V+VNIPAA +EAVE+G V R T +VGR+ R T +++S+I ++ Sbjct: 124 VRLQTFPE-DLGRRHVMVNIPAAYVEAVEDGSVATRHTAVVGRLSRPTHLVNSKIYEVIL 182 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NPYW PRSI++KD+M L+R+DP YL+ N I +ID KG EV E VDWN E PN FRQ Sbjct: 183 NPYWTAPRSIVEKDIMPLMRKDPTYLEKNAIRLIDGKGNEVAPETVDWNG-EAPNLQFRQ 241 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 DPGKINAMASTKI FY++N YMHDTP+ LFN ++RFE+SGCVRV+N+ DL WLL++T Sbjct: 242 DPGKINAMASTKINFYNKNGEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLTNWLLRET 301 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 P WSR +E+V+ T TP+KLATEVPV+FVYISAW D I+QFRDDIY +D Sbjct: 302 PGWSRQQMEQVIATGVNTPIKLATEVPVYFVYISAWGMPDGIVQFRDDIYQMDG 355 >gi|239831589|ref|ZP_04679918.1| peptidoglycan binding domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239823856|gb|EEQ95424.1| peptidoglycan binding domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 438 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 196/395 (49%), Positives = 269/395 (68%), Gaps = 7/395 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V VL ++I +D+FD AR G + ++ P++S +T+ + AI Sbjct: 38 AMVSSAYAQQVLTDVIAAPRRGNWDDQFD---ARATGGQRVATNQPVLSPQTVGNLQTAI 94 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 A Y DI RGGWP +P L +G + +VQ LR+RL+ISGDL GLS +FD YV++A Sbjct: 95 AQYTDIAGRGGWPSVPGNAKLQIGVTDPAVQALRKRLMISGDLPQEAGLSSSFDTYVDAA 154 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 VK FQ RHGL G++ T AMNV + R+ QLQ NL R+ L +Q M R+V+VNI Sbjct: 155 VKRFQSRHGLPADGVMGQFTYAAMNVDANTRLGQLQTNLQRLSPLADQGMQEQRFVMVNI 214 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTPIL+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 215 PAARIEAVEGGSVVQRHTAVVGKIDRQTPILNSKIHEVILNPYWTAPKSIIQKDIIPLMR 274 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DPQYL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++++ Sbjct: 275 KDPQYLAKNKIRLYDQSGQEVAPETVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNQHQ 334 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R IE +K+ TP+ Sbjct: 335 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTAGWDRQTIENTIKSGTNTPI 394 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 ++A VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 395 QVADPVPLHFVYISAWSTGDGVVQFRDDIYKMDGA 429 >gi|153009858|ref|YP_001371073.1| peptidoglycan-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151561746|gb|ABS15244.1| Peptidoglycan-binding domain 1 protein [Ochrobactrum anthropi ATCC 49188] Length = 433 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 195/395 (49%), Positives = 268/395 (67%), Gaps = 7/395 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V L ++I+ S D+FD AR G + ++ P++S +T+ + AI Sbjct: 33 AMVSSAYAQQALTDVISSSRRGNWADQFD---ARATGGQRVATNQPVLSPQTVGNLQTAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 A Y DI RGGWP +P L +G + SVQ LR+RL+ISGDL GLS +FD YV++A Sbjct: 90 AQYTDIAGRGGWPSVPGNTKLQIGVTDPSVQALRKRLMISGDLPQEAGLSSSFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 VK FQ RHGL G++ T AMNV + R+ QLQ NL R+ L Q + R+V+VNI Sbjct: 150 VKRFQSRHGLPADGVMGQFTYAAMNVDANTRLGQLQTNLQRLSPLANQGLQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTPIL+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVMQRHTAVVGKIDRQTPILNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DPQYL N I + D+ G+EV E +DWN+ + +FRQDPGKINAM+STKI F+++ Sbjct: 270 KDPQYLAKNKIRLYDQSGQEVAPESIDWNTDDAVKLMFRQDPGKINAMSSTKINFHNQYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTAGWDRQNIESTIKSGTNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 +LA VP+HFVYI+AWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYITAWSTGDGVVQFRDDIYKMDGA 424 >gi|306841990|ref|ZP_07474664.1| peptidoglycan-binding protein [Brucella sp. BO2] gi|306287918|gb|EFM59335.1| peptidoglycan-binding protein [Brucella sp. BO2] Length = 433 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/394 (50%), Positives = 270/394 (68%), Gaps = 7/394 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD AR G + ++ P++S +T+A + AI Sbjct: 33 AMVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DPQYL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPQYLTKNKIRLYDQSGQEVLPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|306843707|ref|ZP_07476307.1| peptidoglycan-binding protein [Brucella sp. BO1] gi|306276017|gb|EFM57726.1| peptidoglycan-binding protein [Brucella sp. BO1] Length = 433 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/394 (50%), Positives = 270/394 (68%), Gaps = 7/394 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD AR G + ++ P++S +T+A + AI Sbjct: 33 AMVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDAMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DPQYL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPQYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|254718880|ref|ZP_05180691.1| peptidoglycan binding domain-containing protein [Brucella sp. 83/13] gi|265983867|ref|ZP_06096602.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13] gi|306838784|ref|ZP_07471617.1| peptidoglycan-binding protein [Brucella sp. NF 2653] gi|264662459|gb|EEZ32720.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13] gi|306406135|gb|EFM62381.1| peptidoglycan-binding protein [Brucella sp. NF 2653] Length = 433 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/394 (50%), Positives = 270/394 (68%), Gaps = 7/394 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD AR G + ++ P++S +T+A + AI Sbjct: 33 AMVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DPQYL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPQYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|23501649|ref|NP_697776.1| peptidoglycan-binding protein [Brucella suis 1330] gi|23347568|gb|AAN29691.1| peptidoglycan-binding protein, putative [Brucella suis 1330] Length = 433 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/394 (50%), Positives = 270/394 (68%), Gaps = 7/394 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD AR G + ++ P++S +T+A + AI Sbjct: 33 AMVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAACIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|161618731|ref|YP_001592618.1| peptidoglycan binding domain-containing protein [Brucella canis ATCC 23365] gi|254701537|ref|ZP_05163365.1| peptidoglycan binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|254704086|ref|ZP_05165914.1| peptidoglycan binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|254709878|ref|ZP_05171689.1| peptidoglycan binding domain-containing protein [Brucella pinnipedialis B2/94] gi|254713879|ref|ZP_05175690.1| peptidoglycan binding domain-containing protein [Brucella ceti M644/93/1] gi|254717064|ref|ZP_05178875.1| peptidoglycan binding domain-containing protein [Brucella ceti M13/05/1] gi|256031370|ref|ZP_05444984.1| peptidoglycan binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|256060880|ref|ZP_05451040.1| peptidoglycan binding domain-containing protein [Brucella neotomae 5K33] gi|256369195|ref|YP_003106703.1| peptidoglycan-binding protein, putative [Brucella microti CCM 4915] gi|260566666|ref|ZP_05837136.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str. 40] gi|261218874|ref|ZP_05933155.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1] gi|261317420|ref|ZP_05956617.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis B2/94] gi|261321627|ref|ZP_05960824.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1] gi|261752087|ref|ZP_05995796.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str. 513] gi|261754746|ref|ZP_05998455.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str. 686] gi|161335542|gb|ABX61847.1| Peptidoglycan-binding domain 1 protein [Brucella canis ATCC 23365] gi|255999355|gb|ACU47754.1| peptidoglycan-binding protein, putative [Brucella microti CCM 4915] gi|260156184|gb|EEW91264.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str. 40] gi|260923963|gb|EEX90531.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1] gi|261294317|gb|EEX97813.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1] gi|261296643|gb|EEY00140.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis B2/94] gi|261741840|gb|EEY29766.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str. 513] gi|261744499|gb|EEY32425.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str. 686] Length = 433 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/394 (50%), Positives = 270/394 (68%), Gaps = 7/394 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD AR G + ++ P++S +T+A + AI Sbjct: 33 AMVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|260563801|ref|ZP_05834287.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. 16M] gi|260153817|gb|EEW88909.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. 16M] Length = 433 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/394 (50%), Positives = 270/394 (68%), Gaps = 7/394 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD AR G + ++ P++S +T+A + AI Sbjct: 33 AMVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|225852279|ref|YP_002732512.1| peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC 23457] gi|256044450|ref|ZP_05447354.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. Rev.1] gi|256113294|ref|ZP_05454162.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 3 str. Ether] gi|256264215|ref|ZP_05466747.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|225640644|gb|ACO00558.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC 23457] gi|263094459|gb|EEZ18281.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|326408784|gb|ADZ65849.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M28] gi|326538502|gb|ADZ86717.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M5-90] Length = 433 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/394 (50%), Positives = 270/394 (68%), Gaps = 7/394 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD AR G + ++ P++S +T+A + AI Sbjct: 33 AMVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|148558991|ref|YP_001258743.1| putative peptidoglycan-binding protein [Brucella ovis ATCC 25840] gi|261324878|ref|ZP_05964075.1| peptidoglycan binding domain-containing protein [Brucella neotomae 5K33] gi|265988457|ref|ZP_06101014.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M292/94/1] gi|148370248|gb|ABQ60227.1| putative peptidoglycan-binding protein [Brucella ovis ATCC 25840] gi|261300858|gb|EEY04355.1| peptidoglycan binding domain-containing protein [Brucella neotomae 5K33] gi|264660654|gb|EEZ30915.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M292/94/1] Length = 446 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/394 (50%), Positives = 270/394 (68%), Gaps = 7/394 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD AR G + ++ P++S +T+A + AI Sbjct: 46 AMVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQPVLSPQTVADIQNAI 102 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 103 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 162 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 163 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 222 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 223 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 282 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 283 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 342 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 343 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 402 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 403 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 436 >gi|294852125|ref|ZP_06792798.1| peptidoglycan binding domain-containing protein [Brucella sp. NVSL 07-0026] gi|294820714|gb|EFG37713.1| peptidoglycan binding domain-containing protein [Brucella sp. NVSL 07-0026] Length = 433 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 196/394 (49%), Positives = 271/394 (68%), Gaps = 7/394 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD AR G + ++ P++S +T+A + AI Sbjct: 33 AMVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 +K FQ RHGL G++ T A+NV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAVNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV +E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPEYLTKNKIRLYDQSGQEVPLESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|265990871|ref|ZP_06103428.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. Rev.1] gi|265994707|ref|ZP_06107264.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|262765820|gb|EEZ11609.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263001655|gb|EEZ14230.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. Rev.1] Length = 446 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/394 (50%), Positives = 270/394 (68%), Gaps = 7/394 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD AR G + ++ P++S +T+A + AI Sbjct: 46 AMVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQPVLSPQTVADIQNAI 102 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 103 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 162 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 163 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 222 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 223 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 282 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 283 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 342 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 343 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 402 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 403 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 436 >gi|17987476|ref|NP_540110.1| cell wall degradation protein [Brucella melitensis bv. 1 str. 16M] gi|17983172|gb|AAL52374.1| cell wall degradation protein [Brucella melitensis bv. 1 str. 16M] Length = 400 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/393 (50%), Positives = 269/393 (68%), Gaps = 7/393 (1%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAIA 83 +V VL ++I+ +D+FD AR G + ++ P++S +T+A + AI Sbjct: 1 MVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQPVLSPQTVADIQNAIV 57 Query: 84 FYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A+ Sbjct: 58 QYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAAL 117 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNIP 201 K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNIP Sbjct: 118 KRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNIP 177 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 AA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R+ Sbjct: 178 AARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMRK 237 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNT 321 DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 238 DPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYAV 297 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK 381 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP++ Sbjct: 298 YMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPIQ 357 Query: 382 LATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 358 LADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 390 >gi|254707013|ref|ZP_05168841.1| peptidoglycan binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261314480|ref|ZP_05953677.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M163/99/10] gi|261303506|gb|EEY07003.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M163/99/10] Length = 433 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 196/394 (49%), Positives = 270/394 (68%), Gaps = 7/394 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD AR G + ++ P++S +T+A + AI Sbjct: 33 AMVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E +DWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPEYLTKNKIRLYDQSGQEVPPESMDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|256159492|ref|ZP_05457260.1| peptidoglycan binding domain-containing protein [Brucella ceti M490/95/1] gi|256254778|ref|ZP_05460314.1| peptidoglycan binding domain-containing protein [Brucella ceti B1/94] gi|260168504|ref|ZP_05755315.1| peptidoglycan-binding protein, putative [Brucella sp. F5/99] gi|261757974|ref|ZP_06001683.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99] gi|261737958|gb|EEY25954.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99] Length = 433 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/394 (50%), Positives = 269/394 (68%), Gaps = 7/394 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD AR G + ++ P++S +T+A + AI Sbjct: 33 AMVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPVVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|225627262|ref|ZP_03785299.1| peptidoglycan-binding protein [Brucella ceti str. Cudo] gi|261221958|ref|ZP_05936239.1| peptidoglycan binding domain-containing protein [Brucella ceti B1/94] gi|265997921|ref|ZP_06110478.1| peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1] gi|225617267|gb|EEH14312.1| peptidoglycan-binding protein [Brucella ceti str. Cudo] gi|260920542|gb|EEX87195.1| peptidoglycan binding domain-containing protein [Brucella ceti B1/94] gi|262552389|gb|EEZ08379.1| peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1] Length = 446 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 197/394 (50%), Positives = 269/394 (68%), Gaps = 7/394 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD AR G + ++ P++S +T+A + AI Sbjct: 46 AMVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQPVLSPQTVADIQNAI 102 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 103 VQYTDIASRGGWPLVPGNARLQIGVNDPVVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 162 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 163 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 222 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 223 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 282 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 283 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 342 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP+ Sbjct: 343 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPI 402 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 403 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 436 >gi|62289715|ref|YP_221508.1| peptidoglycan-binding protein [Brucella abortus bv. 1 str. 9-941] gi|82699644|ref|YP_414218.1| peptidoglycan binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189023964|ref|YP_001934732.1| peptidoglycan binding domain protein [Brucella abortus S19] gi|254697160|ref|ZP_05158988.1| Putative peptidoglycan binding domain protein [Brucella abortus bv. 2 str. 86/8/59] gi|254730056|ref|ZP_05188634.1| Putative peptidoglycan binding domain protein [Brucella abortus bv. 4 str. 292] gi|260545531|ref|ZP_05821272.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC 8038] gi|260757741|ref|ZP_05870089.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4 str. 292] gi|260761566|ref|ZP_05873909.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2 str. 86/8/59] gi|62195847|gb|AAX74147.1| peptidoglycan-binding protein, hypothetical [Brucella abortus bv. 1 str. 9-941] gi|82615745|emb|CAJ10741.1| Putative peptidoglycan binding domain 1:Twin-arginine translocation pathway signal [Brucella melitensis biovar Abortus 2308] gi|189019536|gb|ACD72258.1| Putative peptidoglycan binding domain protein [Brucella abortus S19] gi|260096938|gb|EEW80813.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC 8038] gi|260668059|gb|EEX54999.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4 str. 292] gi|260671998|gb|EEX58819.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2 str. 86/8/59] Length = 433 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/394 (49%), Positives = 269/394 (68%), Gaps = 7/394 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD AR G + ++ P++S +T+A + AI Sbjct: 33 AMVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTLGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|254693508|ref|ZP_05155336.1| Putative peptidoglycan binding domain protein [Brucella abortus bv. 3 str. Tulya] gi|261213768|ref|ZP_05928049.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str. Tulya] gi|260915375|gb|EEX82236.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str. Tulya] Length = 433 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/394 (49%), Positives = 269/394 (68%), Gaps = 7/394 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD AR G + ++ P++S +T+A + AI Sbjct: 33 AMVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTLGWDRQNIEATIKSGLNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|237815203|ref|ZP_04594201.1| peptidoglycan-binding protein [Brucella abortus str. 2308 A] gi|237790040|gb|EEP64250.1| peptidoglycan-binding protein [Brucella abortus str. 2308 A] Length = 446 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/394 (49%), Positives = 269/394 (68%), Gaps = 7/394 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD AR G + ++ P++S +T+A + AI Sbjct: 46 AMVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQPVLSPQTVADIQNAI 102 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 103 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 162 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 +K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 163 LKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 222 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 223 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 282 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 283 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 342 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R +IE +K+ TP+ Sbjct: 343 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTLGWDRQNIEATIKSGVNTPI 402 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 403 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 436 >gi|163843034|ref|YP_001627438.1| peptidoglycan binding domain-containing protein [Brucella suis ATCC 23445] gi|163673757|gb|ABY37868.1| Peptidoglycan-binding domain 1 protein [Brucella suis ATCC 23445] Length = 433 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 199/409 (48%), Positives = 275/409 (67%), Gaps = 12/409 (2%) Query: 15 FVYLILPMGLSLVEKPIHAS-----VLDEIINESYHSIVNDRFDNFLARVDMG--IDSDI 67 F+ GLS+ + +S VL ++I+ +D+FD AR G + ++ Sbjct: 18 FLRSAATAGLSVAASAMVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQ 74 Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDP 126 P++S +T+A + AI Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL Sbjct: 75 PVLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQ 134 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 GLS AFD YV++A+K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L Sbjct: 135 EAGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPL 194 Query: 187 L-EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 + R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 195 ANDTTQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWT 254 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 P+SIIQKD++ L+R+DP+YL N I + D+ G+EV E VDWN+ + +FRQD GKI Sbjct: 255 APKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDSGKI 314 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 NAM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R Sbjct: 315 NAMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDR 374 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 375 QNIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|254689025|ref|ZP_05152279.1| Putative peptidoglycan binding domain protein [Brucella abortus bv. 6 str. 870] gi|256257275|ref|ZP_05462811.1| Putative peptidoglycan binding domain protein [Brucella abortus bv. 9 str. C68] gi|260754520|ref|ZP_05866868.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str. 870] gi|297248121|ref|ZP_06931839.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|260674628|gb|EEX61449.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str. 870] gi|297175290|gb|EFH34637.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 5 str. B3196] Length = 433 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 195/394 (49%), Positives = 268/394 (68%), Gaps = 7/394 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD AR G + ++ P++S +T+A + AI Sbjct: 33 AMVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQPVLSPQTVADIQNAI 89 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 90 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 149 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 +K FQ RHGL ++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 150 LKRFQARHGLPADAVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 209 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 210 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 269 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 270 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 329 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R +IE +K+ TP+ Sbjct: 330 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTLGWDRQNIEATIKSGVNTPI 389 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 390 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|260883548|ref|ZP_05895162.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260873076|gb|EEX80145.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 9 str. C68] Length = 446 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 195/394 (49%), Positives = 268/394 (68%), Gaps = 7/394 (1%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAI 82 ++V VL ++I+ +D+FD AR G + ++ P++S +T+A + AI Sbjct: 46 AMVSSAYAQQVLSDVISSPRRGNWDDQFD---ARATGGRRVATNQPVLSPQTVADIQNAI 102 Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A Sbjct: 103 VQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAA 162 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNI 200 +K FQ RHGL ++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNI Sbjct: 163 LKRFQARHGLPADAVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNI 222 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R Sbjct: 223 PAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMR 282 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ Sbjct: 283 KDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYA 342 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R +IE +K+ TP+ Sbjct: 343 VYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTLGWDRQNIEATIKSGVNTPI 402 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 403 QLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 436 >gi|218662321|ref|ZP_03518251.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli IE4771] Length = 495 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 190/367 (51%), Positives = 259/367 (70%), Gaps = 5/367 (1%) Query: 34 SVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 S LD ++N +D+FD A R + S+ PI+ +++A ++AI YQ I + G Sbjct: 36 SALDGLLNAPRRGNWDDQFDAKAASRTATAVVSNTPILGPQSVASAQQAIMQYQQIAAAG 95 Query: 93 GWPEL--PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GWPE+ + L LG S +VQ LR+RL I+GDL GLS AFD+YV+ AVK FQ RHG Sbjct: 96 GWPEVNPGDQRLQLGVSHPAVQALRQRLAITGDLPREAGLSSAFDSYVDGAVKRFQARHG 155 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L G++ TL+AMN+P D+R++QL N++R++ E +G R+++VNIPAA +EAVE+ Sbjct: 156 LPADGVLGEFTLKAMNIPADVRLQQLNTNIVRLQTFPED-LGRRHLMVNIPAAYVEAVED 214 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 G V R T +VGR+ R T +++S+I ++ NPYW PRSI++KD+M L+R+DP YL+ N Sbjct: 215 GSVATRHTAVVGRLSRPTHLVNSKIYEVILNPYWTAPRSIVEKDIMPLMRKDPTYLEKNA 274 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 I +ID KG EV E VDWN E PN +FRQDPGKINAMASTKI FY++N YMHDTP+ Sbjct: 275 IRLIDGKGNEVAPETVDWNG-EAPNLMFRQDPGKINAMASTKINFYNKNGEYMHDTPQQG 333 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 LFN ++RFE+SGCVRV+N+ DL WLL++TP WSR +E+V+ + TP+KLA EVPV+F Sbjct: 334 LFNKLMRFESSGCVRVQNVRDLTNWLLRETPGWSRQQMEQVIASGVNTPIKLAAEVPVYF 393 Query: 391 VYISAWS 397 VYISAW Sbjct: 394 VYISAWG 400 >gi|13476933|ref|NP_108502.1| hypothetical protein mlr8397 [Mesorhizobium loti MAFF303099] gi|14027695|dbj|BAB54288.1| mlr8397 [Mesorhizobium loti MAFF303099] Length = 422 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 195/406 (48%), Positives = 271/406 (66%), Gaps = 8/406 (1%) Query: 14 FFVYLILPMGLSLVEKPIHAS-VLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPII 70 FF+ + ++V A V+ +I+ S +D+FD AR G + S +PI Sbjct: 12 FFLSGASLLAAAMVAGRASAQDVIGDILKSSARGNWDDQFD---ARASEGGKVASTLPIF 68 Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 S +T+A TE+A+A YQ+I+ +GGW E+P + L LG V LR+RL++SGDL S G Sbjct: 69 STQTVAFTEQAVAQYQNIVGQGGWVEVPATKKLELGVDDPDVVPLRKRLMVSGDLSQSAG 128 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 +S AFD+YV+SAVK FQ+RHGL G + T AMNV +R+ QLQ NL R+K+ Sbjct: 129 ISTAFDSYVDSAVKRFQLRHGLPADGSMGKYTYAAMNVSAQIRLGQLQTNLQRLKEK-AG 187 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 +G RYVLV+IPAA +EAVEN +V LR T IVG++DRQTPI++S+IN I+ NPYW P S Sbjct: 188 TLGSRYVLVDIPAAQIEAVENDRVVLRHTAIVGKIDRQTPIVNSKINEIIVNPYWNAPVS 247 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I++KD++ L+R+DP YLK+++I + G EV VDW++ + + FRQDPG NAMA Sbjct: 248 IVRKDIIPLMRKDPNYLKNSHIRLFAPDGSEVDPMNVDWSTDDAAKYRFRQDPGSENAMA 307 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 S KI F S + YMHDTP+ LF ++RF++SGCVRV+N+ DL W+L+DTP W R H E Sbjct: 308 SVKINFPSPDGVYMHDTPQQSLFGKMMRFDSSGCVRVQNVRDLVTWILRDTPGWDRQHFE 367 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 +KT + TP+++ VPVHF+Y+SAWS ++QFRDD+Y LD Sbjct: 368 AAIKTGQNTPIQVTNPVPVHFLYLSAWSTGPGVVQFRDDVYALDGA 413 >gi|110633486|ref|YP_673694.1| twin-arginine translocation pathway signal [Mesorhizobium sp. BNC1] gi|110284470|gb|ABG62529.1| Twin-arginine translocation pathway signal [Chelativorans sp. BNC1] Length = 419 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 185/387 (47%), Positives = 262/387 (67%), Gaps = 7/387 (1%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGID---SDIPIISKETIAQTEKAIAFYQDILS 90 + D IIN + +D+FD A++ G D S +P+++ +T E+AIA Y +I++ Sbjct: 28 NAFDAIINAPRRGVWDDQFD---AQISSGRDRVISYLPVLNPQTAVHVEQAIAGYSNIVA 84 Query: 91 RGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 GGWP++P + L LG V+ LR RL++SGDL P G+S AFD+YV+ A+K FQ+RH Sbjct: 85 SGGWPQVPATKKLQLGVIDPDVEALRRRLMVSGDLSPRAGMSPAFDSYVDQALKRFQVRH 144 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL G+ T A+NV +R+ QLQ NL R++++ +++G R+V+VNIPAA +EAVE Sbjct: 145 GLPADGVTGRYTFSALNVSAPVRLGQLQTNLGRLREMTSKQLGNRFVMVNIPAAQIEAVE 204 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 NG+V R T +VG++DRQTP+L S+IN I+ NPYW P SI++KD++ L+R+DP YL DN Sbjct: 205 NGRVVSRHTAVVGKIDRQTPVLSSKINEIILNPYWNAPVSIVRKDIIPLMRKDPNYLTDN 264 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 NI MI G EV +DW++ E + FRQDPGKINAMAS KI F +++ YMHDTP+ Sbjct: 265 NIRMIAPDGSEVDPLTIDWSTEEAAKYRFRQDPGKINAMASVKINFPNQHAVYMHDTPQQ 324 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF + RF +SGCVRV+N+ DL WLL+DT W R IE +++++ + +A VPV+ Sbjct: 325 SLFRDQERFHSSGCVRVQNVRDLVAWLLRDTQGWDRRRIETTIQSQEDIHINVADPVPVY 384 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDNVH 416 FVY+SAWS D ++ FRDDIYG D Sbjct: 385 FVYVSAWSTGDGVVHFRDDIYGFDGAE 411 >gi|260466848|ref|ZP_05813032.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] gi|259029350|gb|EEW30642.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] Length = 417 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 190/383 (49%), Positives = 263/383 (68%), Gaps = 7/383 (1%) Query: 35 VLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAIAFYQDILSRG 92 V+ +I+ S +D+FD AR G + S +PI S +T+A TE+A+A YQ+I+ +G Sbjct: 29 VIGDILKSSARGNWDDQFD---ARASEGGKVASTLPIFSPQTVAFTEQAVAQYQNIVGQG 85 Query: 93 GWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 GW ++P + L LG V LR+RL+I+GDL S G+S AFD+YV+SAVK FQ+RHGL Sbjct: 86 GWVDVPATKKLELGVDDPDVVPLRKRLMIAGDLSQSAGISTAFDSYVDSAVKRFQLRHGL 145 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 G + T AMNV +R+ QLQ NL R+K+ +G RYVLV+IPAA +EAVEN Sbjct: 146 PADGSMGKYTYAAMNVSAQIRLGQLQTNLQRLKEK-AGTLGSRYVLVDIPAAQIEAVEND 204 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 +V LR T IVG++DRQTPI++S+IN I+ NPYW P SI++KD++ L+R+DP YLK+++I Sbjct: 205 RVVLRHTAIVGKIDRQTPIVNSKINEIIVNPYWNAPVSIVRKDIIPLMRKDPDYLKNSHI 264 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 + G EV VDW++ + + FRQDPG NAMAS KI F S + YMHDTP+ L Sbjct: 265 RLFAPDGSEVDPMNVDWSTDDAAKYRFRQDPGSENAMASVKINFPSPDGVYMHDTPQQSL 324 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 F ++RF++SGCVRV+N+ DL W+L+DTP W R H E +KT + TP+++ VPVHF+ Sbjct: 325 FGKMMRFDSSGCVRVQNVRDLVTWILRDTPGWDRQHFEAAIKTGQNTPIQVTNPVPVHFL 384 Query: 392 YISAWSPKDSIIQFRDDIYGLDN 414 Y+SAWS ++QFRDD+Y LD Sbjct: 385 YLSAWSTGPGVVQFRDDVYALDG 407 >gi|319784167|ref|YP_004143643.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170055|gb|ADV13593.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 417 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 187/383 (48%), Positives = 261/383 (68%), Gaps = 7/383 (1%) Query: 35 VLDEIINESYHSIVNDRFDNFLARVDMG--IDSDIPIISKETIAQTEKAIAFYQDILSRG 92 V+ +I+ S +D+FD AR G + S +PI S +T+A TE+A+ YQ+I+ +G Sbjct: 29 VIGDILKSSARGNWDDQFD---ARASEGGKVASTLPIFSPQTVAFTEQAVGQYQNIVGQG 85 Query: 93 GWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 GW E+P + L LG V LR+RL++SGDL S G+S AFD+YV+SAVK FQ+RHGL Sbjct: 86 GWVEVPATKKLQLGVDDPDVVPLRKRLMVSGDLSQSAGISTAFDSYVDSAVKRFQLRHGL 145 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 G + T AMNV +R+ QLQ NL R+++ +G RYVLV+IPAA +EAVEN Sbjct: 146 PADGSMGKYTYAAMNVSAQIRLGQLQTNLQRLREK-AGTLGSRYVLVDIPAAQVEAVEND 204 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 +V LR T IVG++DRQTPI++S+I I+ NPYW P SI++KD++ L+R++P YLK+++I Sbjct: 205 RVVLRHTAIVGKIDRQTPIVNSKITEIIVNPYWNAPVSIVRKDIIPLMRKNPDYLKNSHI 264 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 + G EV VDW++ + + FRQDPG NAMAS KI F S + YMHDTP+ L Sbjct: 265 RLFAPDGSEVDPMNVDWSTDDAAKYRFRQDPGSENAMASVKINFPSPDGVYMHDTPQQSL 324 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 F ++RF++SGCVRV+N+ DL W+L+DTP W R H E +KT + TP+++ VPVHF+ Sbjct: 325 FGKMLRFDSSGCVRVQNVRDLVTWILRDTPGWDRQHFEAAIKTGENTPIQVTNPVPVHFL 384 Query: 392 YISAWSPKDSIIQFRDDIYGLDN 414 Y+SAWS ++QFRDD+Y LD Sbjct: 385 YLSAWSTGPGVVQFRDDVYALDG 407 >gi|90419407|ref|ZP_01227317.1| putative peptidoglycan-binding protein [Aurantimonas manganoxydans SI85-9A1] gi|90336344|gb|EAS50085.1| putative peptidoglycan-binding protein [Aurantimonas manganoxydans SI85-9A1] Length = 447 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 186/384 (48%), Positives = 256/384 (66%), Gaps = 2/384 (0%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGG 93 + L E++ +D+FD + V + S+ P+ S+ TI ++AI Y I+ GG Sbjct: 38 NALGELLQAPTRGNWDDQFDTRGSNVRQ-VASNSPVFSENTIYSLQEAINSYSAIVQGGG 96 Query: 94 WPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 WP +P L +G S +V LR+RL I+GDL + G S AFD YV++AVK FQ RHGL Sbjct: 97 WPMVPEGETLKIGVQSRTVPVLRQRLAIAGDLGNNAGGSPAFDTYVDAAVKRFQARHGLP 156 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G+V T +AMNV DLR+ QLQ NL R+++ L +G RYV+VNIPAAS+EAVENG+ Sbjct: 157 ADGVVSGHTYKAMNVGADLRLGQLQTNLQRLREKLATDLGQRYVVVNIPAASIEAVENGR 216 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V R T +VG+VDRQTPIL SRI + NPYW P SI++KD++ L+++DP YL+ N I Sbjct: 217 VVQRHTAVVGKVDRQTPILDSRITNLNLNPYWHAPVSIVRKDIIPLMQKDPTYLERNAIR 276 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 + D G+E+ + +DWN+ E ++FRQDPGKINAMAS KI F + + YMHDTP+ LF Sbjct: 277 IFDGNGQEIPPQTIDWNTEEAVKYLFRQDPGKINAMASVKINFPNPHAVYMHDTPQQSLF 336 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 + ++RFE+SGCVRV+N+ DL VWL +D P W R IE+V+ R+ + L VPVHF Y Sbjct: 337 SELMRFESSGCVRVQNVRDLIVWLARDVPGWDRQRIEQVIAARERQDIDLLNPVPVHFTY 396 Query: 393 ISAWSPKDSIIQFRDDIYGLDNVH 416 ++AW+ +++QFRDDIY D V Sbjct: 397 VTAWATDPTVVQFRDDIYHRDGVE 420 >gi|114704835|ref|ZP_01437743.1| hypothetical protein FP2506_07861 [Fulvimarina pelagi HTCC2506] gi|114539620|gb|EAU42740.1| hypothetical protein FP2506_07861 [Fulvimarina pelagi HTCC2506] Length = 444 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 183/405 (45%), Positives = 260/405 (64%), Gaps = 2/405 (0%) Query: 13 CFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK 72 F +GL + S LD ++ +D+FD + + S PI S+ Sbjct: 15 AFLSGTTAALGLGMTGFASAQSGLDGLLGARGRGNWDDQFDTRGSSARE-VSSLNPIFSQ 73 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 +T+ T+ A+ Y I+++GGWP +P R L LG + V+ LR+RL ISGDL P S Sbjct: 74 QTLYSTQAAMQTYNQIVAQGGWPTVPARYVLKLGEVTPDVEVLRQRLAISGDLSPQASRS 133 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 AFD YVE+AVK FQ RHGL G+V +A+NVP DLR+ QLQ N R++ L++++ Sbjct: 134 PAFDTYVEAAVKRFQARHGLPADGVVGEHAYKALNVPADLRLFQLQTNAARLQNQLQEQL 193 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 RYV+VNIPAA++EAVENG++ R T +VG+VDRQTPIL S+I + NPYW P SI+ Sbjct: 194 PYRYVMVNIPAAAIEAVENGQIVQRHTAVVGKVDRQTPILTSKITNLNLNPYWHAPASIV 253 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 +KD++ L+RQDP YL+ N IH+ + G+EV + +DW+S E +++FRQ+PG +AMAS Sbjct: 254 RKDIIPLVRQDPTYLQRNGIHIFNGNGQEVPPQSIDWSSDEAVSYLFRQNPGPNSAMASV 313 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 KI F + + YMHDTP+ LF+ ++RFE+SGCVRV+N+ DL VWL +D P W+R IE V Sbjct: 314 KINFPNEHAVYMHDTPQKGLFSELMRFESSGCVRVQNVRDLIVWLARDEPNWNRQAIERV 373 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 + R + LA VPV+F Y++ W+ +++QFRDDIY D Sbjct: 374 ISARSREDIDLANPVPVYFTYVTGWATDPNVVQFRDDIYHRDGAE 418 >gi|304391945|ref|ZP_07373887.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] gi|303296174|gb|EFL90532.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] Length = 421 Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 182/383 (47%), Positives = 248/383 (64%), Gaps = 3/383 (0%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGG 93 + +D I+N ND FD A + + PI + +TI ++AIA Y +I+ GG Sbjct: 33 TAIDRILNAPNRDSWNDSFD-ATAPTKAKVVTSTPIFAPQTIDSVQQAIAEYSNIVRNGG 91 Query: 94 WPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 WP +P + L LG S +V+ LR+RLIISGDL G+S FD YV++AVK FQ RHGL Sbjct: 92 WPRVPAGKKLELGVSDDAVRALRQRLIISGDLPRGAGVSPQFDTYVDAAVKRFQARHGLP 151 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G++ + A+NV +R+ QLQ NL+R+K + +G RYV+VNIPAA +EAVE G+ Sbjct: 152 SDGVMGRYSFAALNVSAPIRLGQLQTNLVRLKAM-SGYLGDRYVMVNIPAAEIEAVELGR 210 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V R T IVGR RQTPIL+S+I + NPYW P+SII KD++ L+R++P YL +N I Sbjct: 211 VAQRHTAIVGRESRQTPILNSKIYELNLNPYWTAPKSIILKDIIPLMRKNPNYLTENKIL 270 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 + D +EV + V+WN+ E FRQ+PG+INAM S KI F + + YMHDTP+ +F Sbjct: 271 LFDGNSQEVSPQSVNWNTEEAVKLRFRQEPGRINAMGSVKINFPNPHAVYMHDTPQKGIF 330 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 N ++RFE+SGCVRV+N+ DL VWL KDTP SR +IE ++ + T +KL VPV+F Y Sbjct: 331 NKLLRFESSGCVRVKNVRDLLVWLAKDTPGASRSNIESIIASGDRTDLKLTAPVPVYFAY 390 Query: 393 ISAWSPKDSIIQFRDDIYGLDNV 415 +SAWS + FRDDIY D V Sbjct: 391 VSAWSNTSGVAHFRDDIYQRDGV 413 >gi|328543533|ref|YP_004303642.1| Twin-arginine translocation pathway signal [polymorphum gilvum SL003B-26A1] gi|326413277|gb|ADZ70340.1| Twin-arginine translocation pathway signal [Polymorphum gilvum SL003B-26A1] Length = 415 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 171/399 (42%), Positives = 260/399 (65%), Gaps = 5/399 (1%) Query: 22 MGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 G+ + + AS L+ + + DRFD + ++ I S P +S ET A Sbjct: 8 FGIGAGVQSVTASPLEALRQYNQRIEWEDRFDATMESLE-AIKSSKPTLSPETADYLAAA 66 Query: 82 IAFYQDILSRGGWPELPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 I YQ I+ +GGW ++ L +G SV LR RLI SGDL+ + GLS FD+YV+ Sbjct: 67 INRYQFIVQQGGWGKVQSSRHGLRIGAQDASVVALRRRLIASGDLEQTAGLSDTFDSYVD 126 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 +AV+ FQ+RHGL P G+V +T+ A+NVP ++R++QL+ NL+R++ + +G RYV+VN Sbjct: 127 AAVRRFQVRHGLIPDGVVGQTTVVALNVPAEVRLQQLETNLVRLRSM-SGFLGDRYVMVN 185 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IPAA +EAVENG+V R T +VG++DRQTPIL+S+I + FNPYW +P SII+KD++ + Sbjct: 186 IPAAEIEAVENGRVRSRHTAVVGKIDRQTPILNSKIYELNFNPYWTVPVSIIRKDLIPKM 245 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 ++DP+YL N I + D K E+ +++DWN+ E + FRQ+PG IN++ S +I F++++ Sbjct: 246 KEDPEYLAKNKIRIFDWKNNELSWQQIDWNTDEATQYQFRQEPGDINSLGSVRINFHNQH 305 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD-TPTWSRYHIEEVVKTRKTT 378 Y+HDTP LF + RF +SGCVRV+N+ +L W+L+ TP WSR ++E ++ Sbjct: 306 QVYLHDTPSKSLFGSDYRFHSSGCVRVQNVRELVTWMLESTTPDWSRARVDETIRMGVRE 365 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 VKL T+VP++ Y++AWS + I+ FRDDIY D ++ Sbjct: 366 DVKLKTQVPLYMTYVTAWSTDEGIVHFRDDIYNRDGLYA 404 >gi|182677877|ref|YP_001832023.1| peptidoglycan binding domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182633760|gb|ACB94534.1| Peptidoglycan-binding domain 1 protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 456 Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 168/401 (41%), Positives = 260/401 (64%), Gaps = 12/401 (2%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVN--DRFDNFLARVDMGI-DSDIPIISKET 74 ++L MGL L + P+ S + Y S R+D ++ + S++P++S +T Sbjct: 33 ILLAMGLCLSQLPLQVS---SALAGPYGSQAEWAQRYD---TDANLAVLRSNVPVLSVQT 86 Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + TE+AI Y++I++RGGW + L LG ++ +V LR+RLI +GDLD S G S Sbjct: 87 LNATEQAIETYRNIVARGGWNRVSASATLKLGANNAAVTELRKRLIETGDLDASAGTSPI 146 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 FD+YV++ V+ FQ RHGL +G+V+ T+ AMNVP D+R+ QL+VNL+R++ +G Sbjct: 147 FDSYVDAGVRHFQARHGLAETGIVNRETVTAMNVPADVRLHQLEVNLVRLRSY-SGNLGE 205 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R+V+ NIPA ++E VENG V VG++DRQ+P++ +R I FNPYW +P SII+K Sbjct: 206 RFVMANIPAMAVETVENGVVATHHIAGVGKIDRQSPVMMTRATDINFNPYWTVPASIIRK 265 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK-INAMASTK 312 D++ +++DP YL D+ I + ++ G+E+ +V+WNS E N+ FRQDPG IN++ + Sbjct: 266 DLIPRMQKDPNYLSDHKIRIFNKDGQELQSSQVNWNSLEATNYRFRQDPGGDINSLGVVR 325 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 I + YMHDTPE +F + RF +SGC+RV+N+ D WLLKDTP W R HI+E + Sbjct: 326 INIANPYGVYMHDTPEKGVFGDDERFVSSGCIRVQNVRDYVTWLLKDTPGWDRAHIDEAI 385 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 ++ + K+ + VPV++VY++AW+ D ++QFR+DIY D Sbjct: 386 RSGQRIDAKITSSVPVYWVYVTAWATPDGLVQFREDIYQRD 426 >gi|118587981|ref|ZP_01545391.1| hypothetical protein SIAM614_10408 [Stappia aggregata IAM 12614] gi|118439603|gb|EAV46234.1| hypothetical protein SIAM614_10408 [Stappia aggregata IAM 12614] Length = 434 Score = 340 bits (873), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 160/369 (43%), Positives = 243/369 (65%), Gaps = 6/369 (1%) Query: 53 DNFLARVD--MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI--RPLHLGNSS 108 DNF D + S P +S +T AI YQ I+ GGW + + L +G Sbjct: 59 DNFDIATDHITEVKSSAPTLSPQTADYIAAAIDRYQRIVQAGGWGTVSTGGKALRIGAKD 118 Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V LR RL++SGDL+ GLS FD+YV++ ++ FQ+RHGL P G++ ST+ A+N+P Sbjct: 119 PRVVELRRRLMVSGDLEQQAGLSDTFDSYVDAGLRRFQLRHGLIPDGVMGDSTVTALNIP 178 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 D+R+RQL+ N++R++ + +G RYV+VNIPAA +EAVENG V R T +VG++DRQT Sbjct: 179 ADVRLRQLETNMIRMRSM-SGFLGDRYVMVNIPAAEIEAVENGMVRSRHTAVVGKIDRQT 237 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 PIL+S+I + FNPYW +P+SII+KD++ +++DPQYL NNI + D E+ +++DW Sbjct: 238 PILNSKIYELNFNPYWTVPKSIIRKDLIPKMKEDPQYLAKNNIRIFDWSNNELTWQQIDW 297 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 N+ E + F QDPG N++ S +I F++++ Y+HDTP LF RF +SGCVRV+N Sbjct: 298 NTDEATQYRFTQDPGSENSLGSVRINFHNKHQVYLHDTPSKTLFGEANRFHSSGCVRVQN 357 Query: 349 IIDLDVWLLKD-TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 + +L WLL+ TP W R ++ V++T + VKL +++P++ YI+AW+ D ++ FRD Sbjct: 358 VRELVTWLLQSTTPDWDRGRVDGVIRTGEREDVKLKSQIPLYLTYITAWANADGVVHFRD 417 Query: 408 DIYGLDNVH 416 DIY D+++ Sbjct: 418 DIYDRDDLY 426 >gi|254469893|ref|ZP_05083298.1| twin-arginine translocation pathway signal [Pseudovibrio sp. JE062] gi|211961728|gb|EEA96923.1| twin-arginine translocation pathway signal [Pseudovibrio sp. JE062] Length = 448 Score = 338 bits (867), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 168/378 (44%), Positives = 247/378 (65%), Gaps = 5/378 (1%) Query: 50 DRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSS 108 D FD ++ ++ ID PIISK+T AI Y+ I GGWPE+ + L +G + Sbjct: 69 DTFDEGVSSLEQ-IDFVAPIISKQTTQYMIDAILDYERIALNGGWPEVSTKKVLRIGMRA 127 Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++ LR+RLI+SGD+ G+S FD+YV+SAV+ FQ+RHGL P G+V +T+ AMNVP Sbjct: 128 PAIASLRQRLIVSGDMAQHAGVSEVFDSYVDSAVRRFQLRHGLTPDGVVGRATVIAMNVP 187 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 V++R++QL+ NL R+ L + + YV VNIPAA +E VENG+V R T +VG+ DRQ+ Sbjct: 188 VEVRLQQLRTNLERVSALAD-NVSDTYVNVNIPAARIEVVENGRVRSRHTAVVGKQDRQS 246 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 PIL S I + FNPYW +P SII+KD++ +++DPQYL NNIH+ D GKE +E+DW Sbjct: 247 PILSSAIYEVNFNPYWTVPVSIIRKDLIPKMQKDPQYLAKNNIHIFDWYGKEKQWQEIDW 306 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 N+ E + F Q+PG+ N+M S +I F + + Y+HDTPE LF RF +SGCVRV+N Sbjct: 307 NTDEATKYRFTQEPGEGNSMGSIRINFNNTHQVYLHDTPEQSLFGEGYRFHSSGCVRVQN 366 Query: 349 IIDLDVWLLKD-TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 + +L WLL TP W+R ++ + + + VK+ + +P+H Y++AW+ D ++ FRD Sbjct: 367 VRELVTWLLGSTTPEWTRSRVDATINSGERLDVKMKSRIPLHLSYVTAWALSDGMVHFRD 426 Query: 408 DIYGLDNVHVGII-PLPE 424 DIY D ++ + PL + Sbjct: 427 DIYDKDGLYSASVDPLAQ 444 >gi|307946606|ref|ZP_07661941.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] gi|307770270|gb|EFO29496.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] Length = 437 Score = 335 bits (860), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 163/371 (43%), Positives = 246/371 (66%), Gaps = 6/371 (1%) Query: 53 DNFLARVD--MGIDSDIPIISKETIAQTEKAIAFYQDI--LSRGGWPELPIRPLHLGNSS 108 D+F + V ++S P +S ET AI Y I L G R L +G+ Sbjct: 57 DDFQSTVQSLKALESSAPTLSPETADYMGVAIDRYSRIVQLGGWGGVTSGGRALRIGSKD 116 Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V LR+RL+ SGDL + G+S FD+YV++AV+ FQ+RHGL P G+V ST+ A+NVP Sbjct: 117 NRVVELRQRLMASGDLQQNAGMSSVFDSYVDAAVRRFQLRHGLLPDGVVGESTIVALNVP 176 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 ++R+RQL+ NL+R++ + +G RYV+VNIPAA +EAVE G+V R T +VG++DRQT Sbjct: 177 ANVRLRQLETNLVRLRSM-SGFLGDRYVMVNIPAAEIEAVEYGRVRSRHTAVVGKIDRQT 235 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 PIL+S+I + FNPYW +P SII+KD++ ++QDPQYL N I + D KG E+ +++DW Sbjct: 236 PILNSKIYELNFNPYWTVPVSIIRKDLIPKMKQDPQYLAKNRIRIFDWKGNELAWQQIDW 295 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 N+ E + FRQ+PG+IN++ S +I F++++ Y+HDTP LF + RF +SGCVRV+N Sbjct: 296 NTDEATKYQFRQEPGEINSLGSVRINFHNKHQVYLHDTPSKTLFGSDYRFHSSGCVRVQN 355 Query: 349 IIDLDVWLLKD-TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 + ++ WLL+ TP W R +++V++T V+L + +P++ YI+AW+ D +I FRD Sbjct: 356 VREMVTWLLQSTTPDWDRARVDQVIRTGAREDVRLKSSIPLYLTYITAWANADGVIHFRD 415 Query: 408 DIYGLDNVHVG 418 D+Y D ++ G Sbjct: 416 DVYNRDGLYNG 426 >gi|296444378|ref|ZP_06886343.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] gi|296258025|gb|EFH05087.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] Length = 443 Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 158/356 (44%), Positives = 240/356 (67%), Gaps = 3/356 (0%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGD 123 S PI+S +T+A TE AI QDI++RGGWP +P + L LG++S +V LR RL+ISGD Sbjct: 54 STTPILSTQTVAATEAAIQQMQDIVARGGWPMVPAGQQLKLGSNSPAVSILRRRLMISGD 113 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 + G S FD+YVE+AV+ FQ RHG++ +G+V T AMNVP + R+RQL+ NL+R+ Sbjct: 114 IGQDAGASPIFDSYVEAAVRRFQARHGVNATGVVAQQTFVAMNVPAEARMRQLETNLIRL 173 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + + +G RYV NIPAAS+E VENG V VG++DRQ+P++ ++ +I FNP+ Sbjct: 174 RSF-SRDLGNRYVTANIPAASVETVENGYVVTHHIAGVGKIDRQSPVMQTKAIQINFNPF 232 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD-P 302 W +P S+I+KD++ ++ DP YL N+I + ++ G E+ E+++WNS + N+ FRQD Sbjct: 233 WTVPASVIRKDLIPKMQADPNYLTANHIRVYNKDGMELAPEQINWNSLDAMNYKFRQDIG 292 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ +I+ + YMHDTP +F + RF +SGC+R++N+ D WLLK+TP Sbjct: 293 GDFNSLGVVRIDIANPYGVYMHDTPAKGIFGDDFRFVSSGCIRLQNVRDYVAWLLKETPG 352 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 W R HI+EV+++ + V++ VPV++VY++AW+ D +IQFRDDIY D + + Sbjct: 353 WDRDHIDEVIRSGERVDVRITPAVPVYWVYVTAWAAPDGLIQFRDDIYQRDGLGLA 408 >gi|254502740|ref|ZP_05114891.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] gi|222438811|gb|EEE45490.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] Length = 408 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 154/357 (43%), Positives = 241/357 (67%), Gaps = 5/357 (1%) Query: 63 IDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI--RPLHLGNSSVSVQRLRERLII 120 + S P +S T+ AI YQ I+ GGW + + L +G V ++R+RLII Sbjct: 44 VKSYAPTLSPTTVDYIGAAITRYQSIVQMGGWGTVSTGGKALRIGMKDPRVVQVRQRLII 103 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 SGDL+ GLS FD+YV++A++ FQ+RHGL P G++ ST+EA+N+P +R+RQL+ NL Sbjct: 104 SGDLEQQAGLSDTFDSYVDAALRRFQLRHGLIPDGVMGESTVEALNIPAYVRLRQLETNL 163 Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 +R++ + +G RYV+VNIPAA +EAVE+G+V R T +VG++DRQTPIL+S+I + F Sbjct: 164 VRVRSM-SGNLGDRYVMVNIPAAEIEAVEDGRVRSRHTAVVGKIDRQTPILNSKIYELNF 222 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK-GKEVFVEEVDWNSPEPPNFIFR 299 NPYW +P SII+KD++ +++DP+YL N I + + + +EV +++DWN+ E + F Sbjct: 223 NPYWTVPVSIIRKDLIPKMKEDPEYLSRNKIRIFNWRDNQEVAWQQIDWNTDEATQYRFT 282 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 QDPG+ N++ S +I F++++ Y+HDTP LF RF +SGCVRV+N+ +L WLL+ Sbjct: 283 QDPGQENSLGSVRINFHNKHQVYLHDTPSKTLFGEDYRFHSSGCVRVQNVRELVTWLLQS 342 Query: 360 -TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 TP W R ++ V++T + VKL +P++ Y++AW+ D ++ FR+DIY D++ Sbjct: 343 TTPDWDRTKVDSVIRTGEREDVKLKRSIPLYMTYVTAWANADGVVHFREDIYNRDDL 399 >gi|217978266|ref|YP_002362413.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] gi|217503642|gb|ACK51051.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] Length = 447 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 156/352 (44%), Positives = 234/352 (66%), Gaps = 3/352 (0%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGD 123 S+ P++S++T+A TE+AI Y+ I++ GGW +P L LG S SV LR+RL+ SGD Sbjct: 56 SNTPVLSQQTLAATEQAIETYRQIVASGGWNMVPASNVLKLGVSGPSVVALRKRLVASGD 115 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 LD S G S FD++VE+ VK FQ RHGL +G+V T A+N DLR+ QL++NL+R+ Sbjct: 116 LDASAGASPVFDSFVEAGVKHFQARHGLLETGLVSKDTFAALNATADLRLHQLEINLIRL 175 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + +G R+V+ NIPA ++E VENG V VG++DRQ+P++ ++ I FNP+ Sbjct: 176 RSY-SGNLGERFVMANIPAMAVETVENGAVATHHAAGVGKIDRQSPVMMTKATDINFNPF 234 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +P S+I+KD++ ++++P YL ++ I + D+ +EV ++DW + + N+ +RQDPG Sbjct: 235 WTMPPSLIKKDLIPRMQKNPDYLTEHKIRIFDKDNQEVPPSQIDWTTNQATNYRYRQDPG 294 Query: 304 K-INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 IN++ +I + YMHDTPE +F + RF +SGC+RV+N+ D WLLKDTP Sbjct: 295 GDINSLGVVRINISNPYGVYMHDTPEKGVFGDDFRFVSSGCIRVQNVRDYVAWLLKDTPG 354 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 W R HI+E +++ + KLAT VPV++VYI+AWS + +IQFRDDIY D Sbjct: 355 WDREHIDEAIRSGQRIDAKLATPVPVYWVYITAWSTPEGLIQFRDDIYQRDG 406 >gi|323136642|ref|ZP_08071723.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322397959|gb|EFY00480.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 435 Score = 323 bits (828), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 151/355 (42%), Positives = 240/355 (67%), Gaps = 3/355 (0%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGD 123 S PI+S +T+A TE AI +++I++ GGWP++P L LG SS +V LR+RLI+SGD Sbjct: 48 STTPILSTQTVAATEAAIEQFREIVANGGWPQVPAGHQLRLGVSSPAVSTLRKRLIVSGD 107 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 + G S FD+YVE+AV+ FQ RHG+ +G+V+ T A+NVP + R+RQL+ NL+R+ Sbjct: 108 IGHETGTSPIFDSYVEAAVRRFQARHGIIETGVVNQQTFAALNVPAETRLRQLETNLVRL 167 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + + +G RYV NIPAA++E VENG+V VG++DRQ+P++ ++ ++ FNP+ Sbjct: 168 RSF-SRDLGNRYVTANIPAATVETVENGQVVTHHIAGVGKIDRQSPVMQTKAIQVNFNPF 226 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD-P 302 W +P S+I+KD++ ++ DP YL DN+I + +++G+E+ E+++W S + N+ FRQD Sbjct: 227 WTVPASVIRKDLIPKMQADPNYLHDNHIRVYNKEGQELQPEQINWRSLDALNYKFRQDIG 286 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ +I+ + YMHDTP +F + RF +SGC+R++N+ D +LL++TP Sbjct: 287 GDFNSLGVVRIDIANPYGVYMHDTPAKGVFGDDFRFVSSGCIRLQNVRDYVAFLLRETPG 346 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 W R HI++V+ + + VK+ VPV++VY++AW D + QFRDDIY D + V Sbjct: 347 WDRDHIDQVIASGERVDVKITPPVPVYWVYVTAWGAPDGVTQFRDDIYQRDGLGV 401 >gi|170741295|ref|YP_001769950.1| peptidoglycan binding domain-containing protein [Methylobacterium sp. 4-46] gi|168195569|gb|ACA17516.1| Peptidoglycan-binding domain 1 protein [Methylobacterium sp. 4-46] Length = 426 Score = 319 bits (818), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 154/353 (43%), Positives = 236/353 (66%), Gaps = 4/353 (1%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGD 123 S+ PI+S +T+A TE+ I Y+DI++RGGW P L +G S +V LR+RLI+SGD Sbjct: 50 SNTPILSPQTLAATEQMIERYRDIVARGGWQPVSGADRLRVGTKSPAVVALRQRLIVSGD 109 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 LDP+ G S +D+YVE+ V+ FQ RHGL+ +G ++ +T++AMNVP D+R+RQL++N +R+ Sbjct: 110 LDPAAGSSPIYDSYVEAGVRRFQARHGLNETGAMNLTTVQAMNVPADVRLRQLELNAVRL 169 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + +G RYV+VNIPAA +E VE V R VG++DRQ+PI++++I + FNPY Sbjct: 170 RSY-SGNLGARYVIVNIPAALVETVEGDHVATRHAAGVGKIDRQSPIMNAKIQEVNFNPY 228 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +P SII+KD++ ++++P YL DN I + D + +E+ +V+W S E + FRQDPG Sbjct: 229 WTVPASIIKKDLIPKMQKEPNYLTDNKIRIFDGE-REIAPSQVNWRSDEATRYRFRQDPG 287 Query: 304 -KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 +N+M +I + + YMHDTP +F + RF +SGCVRV+N+ D W+L+ TP Sbjct: 288 VDLNSMGFVRINIPNPHGVYMHDTPAKGIFGDDFRFVSSGCVRVQNVRDYVAWILQGTPQ 347 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + IE ++++ + + +PV++ YI+AWS D ++QFRDDIY D V Sbjct: 348 GNPETIEAIIQSGQRVDARPLAPIPVYWTYITAWSTPDGLVQFRDDIYKRDGV 400 >gi|170751743|ref|YP_001758003.1| peptidoglycan binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170658265|gb|ACB27320.1| Peptidoglycan-binding domain 1 protein [Methylobacterium radiotolerans JCM 2831] Length = 432 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 152/353 (43%), Positives = 233/353 (66%), Gaps = 4/353 (1%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLD 125 +PI+S +T+A TE+ + Y+DI++RGGW ++ L +G+ +V +R+RLI++GDLD Sbjct: 56 VPILSPQTVASTEQMVERYKDIVARGGWRQVSGADHLRIGSRGPAVAAIRQRLIVTGDLD 115 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ G S +D+YV + VK FQ RHGL +G + +T +AMNVP D+R+RQL++N++R++ Sbjct: 116 PAAGSSGVYDSYVAAGVKRFQARHGLSQTGAMTMATQQAMNVPADVRLRQLEINVVRLRS 175 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 +G R+V+ NIPAA +E VENG+V VG++DRQ+PI++++ +I FNP W Sbjct: 176 Y-SGDLGRRFVITNIPAALVETVENGQVVTLHAAGVGKIDRQSPIMNTKATQINFNPTWT 234 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK- 304 +P SI++KD++ +++DP YL DN I ++ G EV + V+W S E + +RQD G Sbjct: 235 VPASIVKKDLIPKMQKDPNYLTDNKIRIL-SNGSEVSPKSVNWFSDEGTRYTYRQDSGAD 293 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 N+M +I + +MHDT +F + RF +SGCVRV+N+ + WLLKDTP W Sbjct: 294 FNSMGIVRINIPNPYGVFMHDTNTKGVFGDDFRFISSGCVRVQNVREYITWLLKDTPGWD 353 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 R +EE +++ K +A VPV++ YI+AWS D I+QFRDDIY D V+V Sbjct: 354 RQKVEEAIESGKRIDANIAQPVPVYWTYITAWSTPDGIVQFRDDIYKRDGVNV 406 >gi|220925145|ref|YP_002500447.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219949752|gb|ACL60144.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 426 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 154/353 (43%), Positives = 234/353 (66%), Gaps = 4/353 (1%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGD 123 S+ PI+S +T+A TE+ I Y+DI++RGGW P L +G S +V LR+RLI SGD Sbjct: 50 SNTPILSPQTLAATEQMIERYRDIVARGGWQPVSGAERLRVGARSPAVVALRQRLITSGD 109 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 LDP+ G S +D+YVE+ V+ FQ RHGL+ +G ++ +T++AMNVP D+R+RQL++N +R+ Sbjct: 110 LDPAAGSSPVYDSYVEAGVRRFQARHGLNQTGAMNITTVQAMNVPADVRLRQLELNAVRL 169 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + +G RYV+VNIPAA +E VE V R VG++DRQ+PI++++I + FNPY Sbjct: 170 RSY-SGNLGARYVIVNIPAALVETVEGDHVATRHAAGVGKIDRQSPIMNAKIQEVNFNPY 228 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +P SII+KD++ ++++P YL DN I + D +E+ +V+W S E + FRQDPG Sbjct: 229 WTVPASIIKKDLIPKMQKEPNYLTDNKIRIFDGD-REIPPSQVNWRSDEATRYRFRQDPG 287 Query: 304 -KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 +N+M +I + + YMHDTP +F + RF +SGCVRV+N+ D W+L+ TP Sbjct: 288 VDLNSMGFVRINIPNPHGVYMHDTPAKGIFGDDFRFVSSGCVRVQNVRDYVAWILQGTPQ 347 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + IE ++++ + + +PV++ YI+AWS D ++QFRDDIY D V Sbjct: 348 GNPETIEAIIQSGQRVDARPVAPIPVYWTYITAWSTPDGLVQFRDDIYKRDGV 400 >gi|188580628|ref|YP_001924073.1| peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] gi|179344126|gb|ACB79538.1| Peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] Length = 434 Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 149/355 (41%), Positives = 228/355 (64%), Gaps = 4/355 (1%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGD 123 S PI+S +TIA TE + Y+ I+SRGGW + L +G+ +V +R+RLI++GD Sbjct: 54 SSTPILSPDTIAATEAMVEKYRAIVSRGGWQAVTGAAGLRVGSRGPAVAAVRQRLIVTGD 113 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 LD + G + +D+YV + VK FQ RHGL +G + +T AMNVP D+R+RQL+ N++R+ Sbjct: 114 LDATAGGAGVYDSYVAAGVKRFQARHGLSQTGQMSPATQAAMNVPADVRLRQLETNVIRL 173 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + +G R+V+ NIPAA ++ VENG+V VG++DRQ+PI++++ I FNP Sbjct: 174 RSY-SGDLGRRFVITNIPAALVQTVENGQVVTLHAAGVGKIDRQSPIMNAKAVEINFNPT 232 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +P SI++KD++ +++DP YL DN I ++ G+E+ V+WNS E + +RQD G Sbjct: 233 WTVPASIVRKDLIPKMQKDPNYLTDNKIRIL-SGGQEISPRSVNWNSDEGTRYTYRQDSG 291 Query: 304 K-INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 N+M +I + + +MHDT +F + RF +SGCVRV+N+ + WLLKDTP Sbjct: 292 ADFNSMGVVRINIPNPHGVFMHDTNSRGVFGDDFRFISSGCVRVQNVREYITWLLKDTPG 351 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 W R H+E+ V++ + +L VPV++ YI+AW+ D +QFRDDIY D V+V Sbjct: 352 WDRAHVEQAVESGQRIDARLTQPVPVYWTYITAWATPDGTVQFRDDIYKRDGVNV 406 >gi|240137931|ref|YP_002962403.1| putative Peptidoglycan-binding protein [Methylobacterium extorquens AM1] gi|240007900|gb|ACS39126.1| putative Peptidoglycan-binding protein [Methylobacterium extorquens AM1] Length = 434 Score = 305 bits (781), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 147/355 (41%), Positives = 226/355 (63%), Gaps = 4/355 (1%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGD 123 S PI+S +TIA TE Y+ I+SRGGW + L +G+ +V +R+RLI++GD Sbjct: 54 SSTPILSPDTIAATESMAEKYRAIVSRGGWQNVSGAAGLRVGSRGPAVAAVRQRLIVTGD 113 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 LD + G + +D+YV + VK FQ RHGL +G + +T AMNVP ++R+RQL+ N++R+ Sbjct: 114 LDATAGGAGVYDSYVAAGVKRFQARHGLSQTGQMSPATQAAMNVPAEVRLRQLETNVIRL 173 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + +G R+V+ NIPAA ++ VENG+V VG++DRQ+PI++++ +I FNP Sbjct: 174 RSY-SGDLGRRFVITNIPAALVQTVENGQVVTLHAAGVGKIDRQSPIMNTKATQINFNPT 232 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +P SI++KD++ +++DP YL DN I ++ G+E+ V+WNS E + +RQD G Sbjct: 233 WTVPASIVRKDLIPKMQKDPNYLTDNKIRIL-SGGQEISPRSVNWNSDEGTRYTYRQDSG 291 Query: 304 K-INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 N+M +I + + +MHDT +F + RF +SGCVRV+N+ + WLLKDTP Sbjct: 292 ADFNSMGVVRINIPNAHGVFMHDTNSRGVFGDDFRFISSGCVRVQNVREYITWLLKDTPG 351 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 W R +E+ V++ + L VPV++ YI+AW+ D +QFRDDIY D V+V Sbjct: 352 WDRTRVEQAVESGQRIDATLTQPVPVYWTYITAWATPDGTVQFRDDIYKRDGVNV 406 >gi|163850806|ref|YP_001638849.1| peptidoglycan binding domain-containing protein [Methylobacterium extorquens PA1] gi|218529626|ref|YP_002420442.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|254560490|ref|YP_003067585.1| peptidoglycan-binding protein [Methylobacterium extorquens DM4] gi|163662411|gb|ABY29778.1| Peptidoglycan-binding domain 1 protein [Methylobacterium extorquens PA1] gi|218521929|gb|ACK82514.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|254267768|emb|CAX23615.1| putative Peptidoglycan-binding protein [Methylobacterium extorquens DM4] Length = 434 Score = 305 bits (781), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 147/355 (41%), Positives = 226/355 (63%), Gaps = 4/355 (1%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGD 123 S PI+S +TIA TE Y+ I+SRGGW + L +G+ +V +R+RLI++GD Sbjct: 54 SSTPILSPDTIAATESMAEKYRAIVSRGGWQNVSGAAGLRVGSRGPAVAAVRQRLIVTGD 113 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 LD + G + +D+YV + VK FQ RHGL +G + +T AMNVP ++R+RQL+ N++R+ Sbjct: 114 LDATAGGAGVYDSYVAAGVKRFQARHGLSQTGQMSPATQAAMNVPAEVRLRQLETNVIRL 173 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + +G R+V+ NIPAA ++ VENG+V VG++DRQ+PI++++ +I FNP Sbjct: 174 RSY-SGDLGRRFVITNIPAALVQTVENGQVVTLHAAGVGKIDRQSPIMNTKATQINFNPT 232 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +P SI++KD++ +++DP YL DN I ++ G+E+ V+WNS E + +RQD G Sbjct: 233 WTVPASIVRKDLIPKMQKDPNYLTDNKIRIL-SGGQEISPRSVNWNSDEGTRYTYRQDSG 291 Query: 304 K-INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 N+M +I + + +MHDT +F + RF +SGCVRV+N+ + WLLKDTP Sbjct: 292 ADFNSMGVVRINIPNAHGVFMHDTNSRGVFGDDFRFISSGCVRVQNVREYITWLLKDTPG 351 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 W R +E+ V++ + L VPV++ YI+AW+ D +QFRDDIY D V+V Sbjct: 352 WDRTRVEQAVESGQRIDATLTQPVPVYWTYITAWATPDGTVQFRDDIYKRDGVNV 406 >gi|312114029|ref|YP_004011625.1| peptidoglycan-binding protein [Rhodomicrobium vannielii ATCC 17100] gi|311219158|gb|ADP70526.1| Peptidoglycan-binding domain 1 protein [Rhodomicrobium vannielii ATCC 17100] Length = 428 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 150/382 (39%), Positives = 221/382 (57%), Gaps = 8/382 (2%) Query: 41 NESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR 100 ++S+ + DR F + + P ++KE IA T+ AI Y +I++RGGWP+LP Sbjct: 45 DDSWEQPMRDR--AFQREWETQPERGFPTLAKENIATTKTAIKQYAEIVARGGWPQLPPI 102 Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G S +V +LR RL ++GDL G FD+YVE AVK Q RHG+ P+G +D + Sbjct: 103 ELRTGMSHPAVVQLRTRLQVTGDLQAYGGYPEVFDSYVEQAVKRAQERHGIPPTGFLDQT 162 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T+EA+NVP R+RQL+ NL R++ L+ +YV+VNIPAA +EAV N +V R + Sbjct: 163 TIEALNVPASARLRQLRTNLARLQSLVPGTPAGKYVIVNIPAAQIEAVNNNQVISRHAGV 222 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI-----HMID 275 VG+ DR +P+L+S I I FN WV+P ++++ D++ R L I H Sbjct: 223 VGKPDRPSPLLNSAIEEINFNKEWVVPPTVLKYDLVPKGRGGQDVLAKYKIDAYATHEDY 282 Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 +KGK++ ++DW+S P + + Q PG N + KI F S YMHDTP +F Sbjct: 283 QKGKKLDASQIDWSSDAPLRYFYVQAPGDENPLGFAKINFASPQGVYMHDTPGQSVFQRS 342 Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 R ++SGC+RV+NI L WLL+D WS + + ++ + V+L VP+++ YI+A Sbjct: 343 FRADSSGCIRVQNIHQLVAWLLEDN-GWSVQQVLRMKQSGERLFVRLKKRVPLYWTYITA 401 Query: 396 WSPKDSIIQFRDDIYGLDNVHV 417 WS D +QFR DIY D V Sbjct: 402 WSTPDGTVQFRRDIYRKDGVEA 423 >gi|27377895|ref|NP_769424.1| hypothetical protein bll2784 [Bradyrhizobium japonicum USDA 110] gi|27351041|dbj|BAC48049.1| bll2784 [Bradyrhizobium japonicum USDA 110] Length = 449 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 146/347 (42%), Positives = 205/347 (59%), Gaps = 3/347 (0%) Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDP 126 P + + + + A Y D+ RGGWP +P LG + LR+RLI+SGDL Sbjct: 77 PTYDEGSAQRIKDAALSYSDLAVRGGWPTIPADAKFALGVQGANDDLLRKRLIVSGDLSA 136 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 K S AFD + AVK FQ RHGL P+GMV TL AMNV V RIRQL+ +L R++ + Sbjct: 137 DKA-SGAFDQDLADAVKRFQARHGLAPTGMVTPRTLAAMNVSVQKRIRQLEASLQRLENM 195 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 G RYV+VNIPAA EAVEN V R VIVG+ ++ +P L ++I ++ NP W + Sbjct: 196 -NFGFGQRYVVVNIPAAFAEAVENDVVVRRYRVIVGKTEKPSPTLTAQITSVVLNPTWTV 254 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SI + ++ A +R+DP YL ++ ++D + VDW+ PNF RQ G N Sbjct: 255 PSSIAKTEISAHMRKDPTYLSRMHMEVLDAHDNPIDPHSVDWSGTHTPNFTVRQQNGTFN 314 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 A+ + KI+ + + YMHDT + LF++ RF++ GC RV N+ DL WLLKD P WSR Sbjct: 315 ALGAVKIDMPNAYSVYMHDTNQRNLFSDDYRFDSHGCSRVDNVRDLAAWLLKDQPKWSRA 374 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I+ + T + V +A +VPV + Y++AW KD +QFR+D+Y D Sbjct: 375 AIDAEIATGQHLDVAMAKKVPVAWTYLTAWMTKDQTVQFRNDVYNQD 421 >gi|300022478|ref|YP_003755089.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299524299|gb|ADJ22768.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 423 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 140/359 (38%), Positives = 211/359 (58%), Gaps = 16/359 (4%) Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELPIRP--------LHLGNSSVSVQRLRERLIIS 121 +SK IA T+ AI Y +I+++GGWP+LP P L G + +V LR+RL S Sbjct: 61 LSKANIAATKTAIQRYTNIVAQGGWPQLPEPPNKTPRDSLLQYGTTDAAVALLRQRLATS 120 Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 GDL S FD+ V+ A+K FQ +GL P+G+ D T+ A+NVP D R++QL+ N+ Sbjct: 121 GDLTGGNISSTYFDSDVDKALKRFQASNGLTPTGIADKRTIVALNVPADARLKQLKANVS 180 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R+++ K G +YV+VNIPAA +EAV+NG++ R +VG+ DR TP+LH+ I + FN Sbjct: 181 RLEEFTA-KAGKKYVVVNIPAAQVEAVQNGQIVARYAAVVGKADRPTPLLHTPITDLSFN 239 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM---ID--EKGKEVFVEEVDWNSPEPPNF 296 P W +P ++I +D++ R+ K N+ + ID GK+V +++W++ +P + Sbjct: 240 PVWRLPPTVISEDLIPRGRE--MQSKGQNVLLKFHIDAYSNGKKVDPAKINWSTVKPGTY 297 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 + Q PGK N + KI F S ++ YMHDTP +F R +SGC+RV NI +L WL Sbjct: 298 TYSQQPGKENPLGFLKINFDSAHSVYMHDTPSDRIFGRNYRSASSGCIRVHNIENLAAWL 357 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 L + W I + + ++L V + FVYISAW+ D I+QFR D+Y D + Sbjct: 358 LAEQRGWDSERIASMKANGERLDLRLKKPVQLLFVYISAWATPDGIVQFRRDLYQKDGI 416 >gi|254564132|ref|YP_003071227.1| peptidoglycan-binding protein [Methylobacterium extorquens DM4] gi|254271410|emb|CAX27423.1| putative peptidoglycan-binding protein (N-terminal domain) [Methylobacterium extorquens DM4] Length = 586 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 138/360 (38%), Positives = 197/360 (54%), Gaps = 19/360 (5%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPI----RPLHLGNSSVSVQRLRERLIISG 122 +P + +T T +A YQ GGW LP +P G+S ++ LR L ++G Sbjct: 127 LPSYTAQTFVDTMRAAERYQVYAEAGGWKTLPADFAPKP---GDSHAAIPSLRHHLTLTG 183 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DL S FD + +AVK FQ RHGL +G+ TL A+NVP D+R RQL+ + R Sbjct: 184 DLPADAPPSDRFDPPLVAAVKSFQARHGLPDAGIFGRLTLNALNVPADVRQRQLRASAQR 243 Query: 183 IKKLLEQKMGL--RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 L+ G RYV VNIP+A++EAVENG V R +VG D+QTP + +RI + Sbjct: 244 ---LMGSSFGFGERYVTVNIPSATVEAVENGTVTRRYVAVVGSPDKQTPAVETRITDVNL 300 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP W +P S+I+ +++ +R++P YL N I ++ G EV +DWN+ + N+ RQ Sbjct: 301 NPTWTVPVSVIKNEIIPTMRKNPGYLAKNRIRILGPGGVEVDPNAIDWNTQKATNYTLRQ 360 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 D G N++ +I+ +R+ YMHDTP LF VRF + GCVRV + + WLL+ T Sbjct: 361 DSGLDNSLGQVRIDMPNRHAIYMHDTPSKSLFAGSVRFHSHGCVRVGQVKEFAAWLLQGT 420 Query: 361 -------PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W IE + + VKL PV FVY++ ++ D + FRDDIYGLD Sbjct: 421 EGPNGPGSAWGPIEIETAIAVGERRDVKLVKPTPVAFVYMTGYATSDGRVHFRDDIYGLD 480 >gi|163854165|ref|YP_001642208.1| peptidoglycan binding domain-containing protein [Methylobacterium extorquens PA1] gi|163665770|gb|ABY33137.1| Peptidoglycan-binding domain 1 protein [Methylobacterium extorquens PA1] Length = 590 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 138/360 (38%), Positives = 197/360 (54%), Gaps = 19/360 (5%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPI----RPLHLGNSSVSVQRLRERLIISG 122 +P + +T T +A YQ GGW LP +P G+S ++ LR L ++G Sbjct: 131 LPSYTAQTFVDTMRAAERYQVYAEAGGWKPLPADFAPKP---GDSHAAIPSLRHHLTLTG 187 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DL S FD + +AVK FQ RHGL +G+ TL A+NVP D+R RQL+ + R Sbjct: 188 DLPADAPPSDRFDPPLVAAVKSFQARHGLPDAGIFGRLTLNALNVPADVRQRQLRASAQR 247 Query: 183 IKKLLEQKMGL--RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 L+ G RYV VNIP+A++EAVENG V R +VG D+QTP + +RI + Sbjct: 248 ---LMGSSFGFGERYVTVNIPSATVEAVENGAVTRRYVAVVGSPDKQTPAVETRITDVNL 304 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP W +P S+I+ +++ +R++P YL N I ++ G EV +DWN+ + N+ RQ Sbjct: 305 NPTWTVPVSVIKNEIIPTMRKNPGYLAKNRIRILGPGGVEVDPNAIDWNTQKATNYTLRQ 364 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 D G N++ +I+ +R+ YMHDTP LF VRF + GCVRV + + WLL+ T Sbjct: 365 DSGLDNSLGQVRIDMPNRHAIYMHDTPSKSLFAGSVRFHSHGCVRVGQVKEFAAWLLQGT 424 Query: 361 -------PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W IE + + VKL PV FVY++ ++ D + FRDDIYGLD Sbjct: 425 EGPNGPGSAWGPIEIETAIAVGERRDVKLVKPTPVAFVYMTGYATSDGRVHFRDDIYGLD 484 >gi|240141625|ref|YP_002966105.1| putative peptidoglycan-binding protein (N-terminal domain) [Methylobacterium extorquens AM1] gi|240011602|gb|ACS42828.1| putative peptidoglycan-binding protein (N-terminal domain) [Methylobacterium extorquens AM1] Length = 586 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 138/360 (38%), Positives = 197/360 (54%), Gaps = 19/360 (5%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPI----RPLHLGNSSVSVQRLRERLIISG 122 +P + +T T +A YQ GGW LP +P G+S ++ LR L ++G Sbjct: 127 LPSYTAQTFVDTMRAAERYQVYAEAGGWKTLPADFAPKP---GDSHAAIPSLRHHLTLTG 183 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DL S FD + +AVK FQ RHGL +G+ TL A+NVP D+R RQL+ + R Sbjct: 184 DLPADAPPSDRFDPPLVAAVKSFQARHGLPDAGIFGRLTLNALNVPADVRQRQLRASAQR 243 Query: 183 IKKLLEQKMGL--RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 L+ G RYV VNIP+A++EAVENG V R +VG D+QTP + +RI + Sbjct: 244 ---LMGSNFGFGERYVTVNIPSATVEAVENGAVTRRYVAVVGSPDKQTPAVETRITDVNL 300 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP W +P S+I+ +++ +R++P YL N I ++ G EV +DWN+ + N+ RQ Sbjct: 301 NPTWTVPVSVIKNEIIPTMRKNPGYLAKNRIRILGPGGVEVDPNAIDWNTQKATNYTLRQ 360 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 D G N++ +I+ +R+ YMHDTP LF VRF + GCVRV + + WLL+ T Sbjct: 361 DSGLDNSLGQVRIDMPNRHAIYMHDTPSKSLFAGSVRFHSHGCVRVGQVKEFAAWLLQGT 420 Query: 361 -------PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W IE + + VKL PV FVY++ ++ D + FRDDIYGLD Sbjct: 421 EGPNGPGSAWGPIEIETAIAVGERRDVKLVKPTPVAFVYMTGYATSDGRVHFRDDIYGLD 480 >gi|154253343|ref|YP_001414167.1| peptidoglycan-binding domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154157293|gb|ABS64510.1| Peptidoglycan-binding domain 1 protein [Parvibaculum lavamentivorans DS-1] Length = 399 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 142/355 (40%), Positives = 205/355 (57%), Gaps = 7/355 (1%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGD 123 S P++S ET+ AI Y+ I + GGW + L LG V ++RERL +GD Sbjct: 36 SSAPVLSAETLLPLTHAIETYRVIANLGGWGYVASGERLELGVRDPRVVQVRERLTATGD 95 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 L + +DA V AV+ +Q+R+GL+P G+V T+ AMNV V RIRQL++NL R+ Sbjct: 96 LTVPAQDAELYDANVYEAVRRYQVRNGLEPDGIVGRRTIAAMNVRVQTRIRQLELNLRRL 155 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + + RYV VNI +EAV NG V R VIVG+ DRQTP + S +N I FNPY Sbjct: 156 SAAVP-ALPDRYVFVNIAGQEVEAVNNGIVEFREPVIVGKQDRQTPEITSEVNSITFNPY 214 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMI---DEKGKEVFVEEVDWNSPE-PPNFIFR 299 W +P+SI DM+ +R +P YL+ I ++ D +E+ +DW++P + FR Sbjct: 215 WYVPKSIAMADMLPKIRANPDYLQRQGIRVLQGWDTNIRELNPRNIDWSNPRINEAYYFR 274 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK- 358 QDPG N++ S KI F + ++HDTP LF R +SGCVRV+N+ L WL++ Sbjct: 275 QDPGPGNSLGSLKINFPNNQAIFLHDTPTKTLFGRQERNFSSGCVRVQNVRGLVSWLMQG 334 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 D+ W + V +R+ V LAT VP++ +Y++AW + I+ FRDD+Y D Sbjct: 335 DSSEWDAARVARSVDSRQYRNVSLATPVPIYLMYLTAWVTPEGIVNFRDDVYDRD 389 >gi|188584494|ref|YP_001927939.1| peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] gi|179347992|gb|ACB83404.1| Peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] Length = 602 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 138/360 (38%), Positives = 198/360 (55%), Gaps = 19/360 (5%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPI----RPLHLGNSSVSVQRLRERLIISG 122 +P + +T T +A YQ GGW LP +P G+S ++ LR L ++G Sbjct: 128 LPTYTAQTFVDTMRAAERYQVYAEAGGWKTLPADFAPKP---GDSHPAIPSLRHHLTLTG 184 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DL S +D + +AVK FQ RHGL +G++ TL A+NVP D R RQL+ + R Sbjct: 185 DLPADAPPSDRYDPPLVAAVKAFQARHGLPDAGILGRLTLNALNVPADTRQRQLRASAQR 244 Query: 183 IKKLLEQKMGL--RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 L+ G RYV VNIP+A++EAVENG V R +VG D+QTP + +RI + Sbjct: 245 ---LMGSNFGFGERYVTVNIPSATVEAVENGTVTRRYVAVVGSPDKQTPAVETRITDVNL 301 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP W +P S+I+ +++ +R++P YL N I ++ G EV +DWN+ + N+ RQ Sbjct: 302 NPTWTVPVSVIRNEIIPTMRKNPGYLAKNRIRILGPGGVEVDPTTIDWNTQKAVNYTLRQ 361 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 D G N++ +I+ +R+ YMHDTP LF VRF + GCVRV + + WLL+ T Sbjct: 362 DSGLDNSLGQIRIDMPNRHAIYMHDTPSKSLFAGSVRFHSHGCVRVGQVKEFAAWLLQGT 421 Query: 361 -------PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 TW IE + + VKL PV FVY++ ++ D + FRDDIYGLD Sbjct: 422 EGPNGAGSTWGPIEIETAIAAGERRDVKLVKPTPVAFVYLTGYATSDGRVHFRDDIYGLD 481 >gi|218533110|ref|YP_002423926.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|218525413|gb|ACK85998.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] Length = 586 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 137/358 (38%), Positives = 196/358 (54%), Gaps = 15/358 (4%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPI----RPLHLGNSSVSVQRLRERLIISG 122 +P + +T T +A YQ GGW LP +P G+S ++ LR L ++G Sbjct: 127 LPSYTAQTFVDTMRAAERYQVYAEAGGWKTLPADFAPKP---GDSHAAIPSLRHHLTLTG 183 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DL S FD + +AVK FQ RHGL +G+ TL A+NVP D+R RQL+ + R Sbjct: 184 DLPADAPPSDRFDPPLVAAVKSFQARHGLPDAGIFGRLTLNALNVPADVRQRQLRASAQR 243 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + G RYV VNIP+A++EAVENG V R +VG D+QTP + +RI + NP Sbjct: 244 LMGS-SFCFGERYVTVNIPSATVEAVENGAVTRRYVAVVGSPDKQTPAVETRITDVNLNP 302 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P S+I+ +++ +R++P YL N I ++ G EV +DWN+ + N+ RQD Sbjct: 303 TWTVPVSVIKNEIIPTMRKNPGYLAKNRIRILGPGGVEVDPNAIDWNTQKATNYTLRQDS 362 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-- 360 G N++ +I+ +R+ YMHDTP LF VRF + GCVRV + + WLL+ T Sbjct: 363 GLDNSLGQVRIDMPNRHAIYMHDTPSKSLFAGSVRFHSHGCVRVGQVKEFAAWLLQGTEG 422 Query: 361 -----PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W IE + + VKL PV FVY++ ++ D + FRDDIYGLD Sbjct: 423 PNGPGSAWGPIEIETAIAVGERRDVKLVKPTPVAFVYMTGYATSDGRVHFRDDIYGLD 480 >gi|220924541|ref|YP_002499843.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219949148|gb|ACL59540.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 540 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 136/358 (37%), Positives = 202/358 (56%), Gaps = 13/358 (3%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD 125 P ++ T T + YQ I+ GGWP +P L G+ + +V LR RL ++ DL Sbjct: 122 TPTLAPSTFLDTLRMADRYQAIVQAGGWPGVPANLSLKPGDRNPAVALLRRRLAVTEDLA 181 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 S D + +A+K FQ RHGL +G++ T++A+NVP R RQL + R Sbjct: 182 ADAPASDVMDEALVAALKRFQQRHGLPDTGLLGPMTVKALNVPASTRQRQLAASASR--- 238 Query: 186 LLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 L+ + G RYV+ NIP+A++EAVE G V R +VG+ DR +P++ +RI + FNP Sbjct: 239 LMGSRFPFGERYVVANIPSATVEAVERGTVARRYVAVVGKPDRASPLVETRITNVNFNPT 298 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +P S+I+KD++ +R+DP YL +I M+D +G EV +DW++ + N+ RQDPG Sbjct: 299 WTVPVSLIKKDIIPHMRKDPGYLAKMHIRMLDGQGNEVQPTAIDWSTEKAVNYTLRQDPG 358 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK----- 358 N++ +I+ +R+ YMHDTP LF+ RF +SGCVRV + L WLL+ Sbjct: 359 FDNSLGQVRIDMPNRHAVYMHDTPSKNLFSRTARFHSSGCVRVAEVKGLVGWLLEGTPGP 418 Query: 359 --DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 W IE + T + +KLA VPV FVY++ ++ D FRDD+Y LD Sbjct: 419 GGPGTVWGPMEIETGIATGERRDIKLAKPVPVTFVYLTGYATPDGRAHFRDDVYSLDG 476 >gi|296446244|ref|ZP_06888191.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] gi|296256281|gb|EFH03361.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] Length = 476 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 130/357 (36%), Positives = 199/357 (55%), Gaps = 7/357 (1%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGD 123 D P + ET T A Y I GGWP++ L G+S +V LR+RL + GD Sbjct: 115 DDPTPALQPETFFTTSLASERYAAIADAGGWPKVGA-ALKPGSSGRAVAALRKRLAVEGD 173 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 L + +D + AVK FQ R GL +G+V +TL ++VP ++R RQL + R+ Sbjct: 174 LPSAAAAGEGWDGALTQAVKHFQFRMGLKQTGVVAGATLRELDVPANVRFRQLASSAQRL 233 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 G RY++VNIP+A+++AVENG+V R T IVG VD +P + +R+ + NP Sbjct: 234 AGN-NFPFGPRYIVVNIPSAAVDAVENGRVVRRYTAIVGGVDHPSPEVEARVGAVNLNPT 292 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +P SII+ ++M ++++P YL I ++D G EV + ++W + N+ RQD G Sbjct: 293 WTVPVSIIKNEIMPKMQKNPSYLAKLRIRVLDNHGAEVDPKTINWANERAANYTLRQDSG 352 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK---DT 360 N++ S +I +++ YMHDTP LF + RF + GCVRV + DL WLL+ + Sbjct: 353 AGNSLGSIRIAMPNKHAVYMHDTPSKRLFASDYRFLSHGCVRVEGVYDLAAWLLQGASGS 412 Query: 361 PT--WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 P+ W + I + + V L VPV +VY++ W+ D + FR+D+YG+D V Sbjct: 413 PSGQWDKAAILAKIAGGERQDVALPKPVPVVWVYMTGWASADGTVHFRNDVYGVDAV 469 >gi|170742780|ref|YP_001771435.1| peptidoglycan binding domain-containing protein [Methylobacterium sp. 4-46] gi|168197054|gb|ACA19001.1| Peptidoglycan-binding domain 1 protein [Methylobacterium sp. 4-46] Length = 545 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 139/358 (38%), Positives = 202/358 (56%), Gaps = 13/358 (3%) Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDP 126 P ++ T T + YQ I+ GGWP +P L G+ V LR RL + DL Sbjct: 128 PTLTPATFLDTLRMADRYQAIVQAGGWPSVPASLSLKPGDRHPGVLALRRRLAATEDLPA 187 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 +S D + +AV FQ RHGL +G+V + T++A+NVP +R RQL + R L Sbjct: 188 DAPVSDRMDEALVAAVTRFQHRHGLPETGLVGAMTVKALNVPASVRQRQLAASAAR---L 244 Query: 187 LEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + + G RYV+ NIPAA++EAVE G V R +VG+ DR +P++ +RI + FNP W Sbjct: 245 MGSRFPFGERYVVANIPAAAVEAVERGAVVRRYVAVVGKPDRASPMVETRITNVNFNPTW 304 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +P S+I+KD++ +R+DP YL +I M+D +G EV +DW++ + N+ RQDPG Sbjct: 305 TVPVSLIKKDIIPHMRKDPGYLAKMHIRMLDGQGNEVQPTAIDWSTEKAVNYTVRQDPGF 364 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 N++ +I+ +R+ YMHDTP LF +RF +SGCVRV + L WLL+ TP Sbjct: 365 DNSLGQVRIDMPNRHAVYMHDTPSKSLFTRTIRFHSSGCVRVAEVKGLVAWLLEGTPGPG 424 Query: 365 RY-------HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 IE + T + +KLA VPV FVY++ ++ D FRDD+Y LD Sbjct: 425 GPGTVWGPIEIETGIATGERRDIKLAKPVPVTFVYLTGYATPDGRAHFRDDVYNLDGA 482 >gi|300022492|ref|YP_003755103.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299524313|gb|ADJ22782.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 452 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 140/363 (38%), Positives = 205/363 (56%), Gaps = 10/363 (2%) Query: 60 DMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERL 118 D+ DS P S I AI YQ I+ GGWP +P R + G V LR+RL Sbjct: 69 DLRPDS-TPWRSDAMINAISAAIERYQSIVDSGGWPVVPTGRMMRSGEDDPRVPILRKRL 127 Query: 119 IISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 ISGD+ P+KG S FD+ +E VK FQ RHG+ +G ++ S +N R+ Q Sbjct: 128 RISGDM-PAKGSYYDSETFDSELEEGVKRFQRRHGIRITGRIEQSVYPVLNTTAAERLAQ 186 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 L++NL R++ L+ + RYVLVN+PA LEAV+ +V LR VIVGR RQTP + + I Sbjct: 187 LKLNLQRVQALM-HGIEDRYVLVNVPAFQLEAVDKYEVQLRHRVIVGRPQRQTPDVRAMI 245 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE-KGKEVFVEEVDWNSPEPP 294 + F PYW +P S+ D++ L+Q+P YL D I + + G E+ VDW++P+ Sbjct: 246 KALNFFPYWRVPDSVATLDLVPRLKQEPGYLADEGIRVYNGVNGPELNPATVDWSAPQVA 305 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 ++ F+QDPG NA+ +I+ + YMHDTP LF R ++GCVRV+N+ DL Sbjct: 306 SYKFKQDPGDKNALGLLRIDMSNEFGVYMHDTPMKNLFGQQSRPFSAGCVRVQNVFDLGD 365 Query: 355 WLLKDTPTWSR-YHIEEVVKTRKTTPVKLATEVPVHFVYISAWS-PKDSIIQFRDDIYGL 412 W+ + P W + + + + + +KL +PV+F Y +AW+ P + ++FR DIYG Sbjct: 366 WIAHNEPGWEQPGRVRDTLAAGQPMELKLMHPIPVYFAYFTAWAEPSNGRVEFRPDIYGR 425 Query: 413 DNV 415 D Sbjct: 426 DGA 428 >gi|170750306|ref|YP_001756566.1| peptidoglycan binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170656828|gb|ACB25883.1| Peptidoglycan-binding domain 1 protein [Methylobacterium radiotolerans JCM 2831] Length = 595 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 196/370 (52%), Gaps = 20/370 (5%) Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELP--IRPLHLGNSSVSVQRLRERLIISGDLD 125 P ++ T T +A Y GGW LP + L G ++ LR L ++GDL Sbjct: 159 PTLTSRTFLDTLRAAERYAAFAEAGGWERLPEDLARLKPGERHPAIPALRHHLTLTGDLP 218 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + D + +A+ FQ RHGL SG++ T+ A+NVP +R RQL + R Sbjct: 219 ADAPPNDRLDPPLVAAIAAFQARHGLPDSGVLGRLTINALNVPAAVRQRQLAASAAR--- 275 Query: 186 LLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 L+ K G RYV+VNIP+A++EAVENG V R +VG D+ TP + +RI I FNP Sbjct: 276 LMGSKFPFGERYVVVNIPSAAVEAVENGAVARRYVAVVGSPDKATPPVETRITDINFNPT 335 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +P S+++ +++ +R++P YL N+I ++ G EV +DW + N+ RQDPG Sbjct: 336 WTVPASVVKNEIIPQMRRNPGYLAKNHIRILSPSG-EVDPTRIDWAGEKAVNYTLRQDPG 394 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT--- 360 N++ +I+ +R YMHDTP LF VRF + GCVRV + +L WLL+ T Sbjct: 395 FDNSLGQVRIDMPNRFAVYMHDTPAKSLFAASVRFHSHGCVRVGQVKELVGWLLQGTDGP 454 Query: 361 ----PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-- 414 +W IE + + +KLA +PV FVY++ ++ D FRDDIY LD Sbjct: 455 NGPGTSWGPIEIETGIADGERRDIKLAKPIPVTFVYLTGYATPDGKAHFRDDIYNLDTPA 514 Query: 415 ---VHVGIIP 421 G IP Sbjct: 515 AEPAATGTIP 524 >gi|323138298|ref|ZP_08073369.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322396381|gb|EFX98911.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 387 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 126/356 (35%), Positives = 202/356 (56%), Gaps = 9/356 (2%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGD 123 D P++ ET T KA Y I+ GGWP++ + L G+ +V LR RL D Sbjct: 32 DDPAPVLQPETFFTTSKASERYAQIVDLGGWPKVGVS-LRPGSKGPAVSTLRRRLAAEDD 90 Query: 124 L--DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 D +K ++D + AVK FQ R GL +G+V +TL A++VP +R RQL + Sbjct: 91 AVTDTNK---QSWDPALTEAVKRFQFRMGLKQTGVVAGATLRALDVPATVRFRQLASSAQ 147 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R+ + + G RY++VNIP+ +++AV+N +V R IVG + +P + +++ + N Sbjct: 148 RLAGV-DFPFGPRYIVVNIPSTAVDAVDNDRVVRRYAAIVGDPEHHSPEVQAKVVAVNIN 206 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W +P SII+ ++ + +DP YL + I +++ +G+EV ++W S N+ RQD Sbjct: 207 PTWTVPTSIIKNEIAPKMLKDPSYLTRSRIRVLNGRGEEVDPRSINWASERAVNYTLRQD 266 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL--KD 359 G N++ S +I + ++ YMHDTP LF + RF + GCVRV+ ++DL WLL + Sbjct: 267 SGAHNSLGSIRISMPNPHSVYMHDTPSRNLFASDYRFLSHGCVRVQGVVDLAAWLLDGSN 326 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 P S+ I + + + V+L+ VPV +VY++ W+ D I+ FRDD+Y LD V Sbjct: 327 GPQLSKEQINAKIASGEREEVRLSHPVPVVWVYMTGWASADGIVHFRDDVYHLDEV 382 >gi|297568521|ref|YP_003689865.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfurivibrio alkaliphilus AHT2] gi|296924436|gb|ADH85246.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfurivibrio alkaliphilus AHT2] Length = 557 Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 131/352 (37%), Positives = 192/352 (54%), Gaps = 11/352 (3%) Query: 82 IAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 +A Y+ + +GGWP++P L LG+ V LR+RL S DL + FD +E+ Sbjct: 200 LADYRRLAEQGGWPQVPGSTTLRLGDRDHRVVTLRQRLHRSRDLSGTAARGDVFDETLEA 259 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AV+ FQ RHGL G+V TL A+NVP+++RIRQL++NL R + L E+ G R++LVN Sbjct: 260 AVRSFQQRHGLLADGVVGRQTLAALNVPLEVRIRQLKLNLERWRWLAEE-FGRRHILVNT 318 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 A LE +E+ + L V+ G R+TP R+ ++ NPYW IP SI +D++ L+ Sbjct: 319 AANKLELIEDEQAILSMRVVTGTPYRRTPNFSDRVTYLVLNPYWNIPASIAAQDILPELQ 378 Query: 261 QDPQYLKDNNIHMID---EKGKEVFVEEVDW----NSPEPPNFIFRQDPGKINAMASTKI 313 ++P YL N I ++D V + VDW P+ + RQDPG N + K Sbjct: 379 ENPDYLAQNGIKVLDGWNADSATVTPDTVDWERLRTRPQAFPYRLRQDPGPRNPLGRIKF 438 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV- 372 F + + Y+HDTP LF+ R +SGC+R+ ++L LL TP S + + Sbjct: 439 MFPNAYSVYLHDTPARELFHRQTRNFSSGCIRLERPLELAANLLAGTPLDSVGALRRALF 498 Query: 373 -KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 +T V+L + VPVH VY +AW D +QFRDDIY D + + P Sbjct: 499 DETSHDRHVRLPSPVPVHLVYWTAWVAPDGSVQFRDDIYERDGLLAQALTTP 550 >gi|85857899|ref|YP_460101.1| cell wall degradation protein [Syntrophus aciditrophicus SB] gi|85720990|gb|ABC75933.1| cell wall degradation protein [Syntrophus aciditrophicus SB] Length = 625 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 129/343 (37%), Positives = 195/343 (56%), Gaps = 8/343 (2%) Query: 85 YQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAV 142 Y DI GGW ++P RPL G V+ LR+RLI +G S+ + FD +E+AV Sbjct: 268 YIDIAEAGGWRKIPAGRPLMKGMRDKRVRTLRKRLISTGMASLSQAKTDTYFDLDLETAV 327 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 + FQ +HGL G+V +TL +NVPV++RI Q+ VNL R++ L ++G R++L+NIP Sbjct: 328 RRFQRQHGLREDGIVGRTTLVELNVPVEVRICQMAVNLDRLR-WLPYELGDRHILINIPD 386 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 +LE VE+ +V + IVG+ D++T +L SRI I NPYW IP+SI ++ + L+++ Sbjct: 387 FNLEIVEDKRVVMHIRAIVGKTDKRTNLLSSRITAIELNPYWKIPKSIAVEEFLPQLKRN 446 Query: 263 PQYL-KDNNIHMIDEKGKEVFVEEVDWNSPEPPNF--IFRQDPGKINAMASTKIEFYSRN 319 P+YL K + D + V + W+ NF RQ+PG N + K F + Sbjct: 447 PRYLGKKIKVFAGDYQTNPVSPTSIKWSRVTAENFPYFLRQEPGSDNPLGRVKFVFSNEA 506 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT--WSRYHIEEVVKTRKT 377 + Y+HDTP LF R + GCVR+ +DL +LLK P WS +I+ ++ K Sbjct: 507 DIYIHDTPTRNLFTQDKRSFSHGCVRIEKPVDLAAYLLKIQPNNRWSSQNIQAEIRKGKN 566 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 P+ L VPVH VY + W ++ + FR DIY +DN+ ++ Sbjct: 567 LPLPLNERVPVHIVYQTVWIDREGNLNFRPDIYDIDNIPANLL 609 >gi|114319260|ref|YP_740943.1| peptidoglycan binding domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114225654|gb|ABI55453.1| Peptidoglycan-binding domain 1 protein [Alkalilimnicola ehrlichii MLHE-1] Length = 559 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 121/350 (34%), Positives = 194/350 (55%), Gaps = 8/350 (2%) Query: 72 KETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGL 130 ++ Q +A+A +Q + +G +P + PL +G+ V+ LRE+L + GDL+ L Sbjct: 185 QDNYHQMRRALARFQALAEQGDYPRMEAGPLLRVGDRDPRVETLREQLRLLGDLEDDAPL 244 Query: 131 S-VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 S + +E+AV+ FQ RHGL G+V T+ A+N P R QL+VNL R++ + + Sbjct: 245 SETLYGEALEAAVRDFQRRHGLQVDGVVGPRTVAALNTPPADRAEQLRVNLERLR-WMPR 303 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 +G RY+LVNI S+ G+ +R V+VGR R+TP+ + ++ NP W +P Sbjct: 304 DLGDRYILVNIAGFSMTVHAEGETVMRQRVVVGRDYRRTPVFTGNMTYLVLNPSWEVPHR 363 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPNFIFR--QDPGK 304 + +D++ L+++DP+YL+ ++ G +E+ E +DW+ F +R Q PG Sbjct: 364 LATRDVLPLIQRDPEYLERMGFRVLQGWGADEREIDPESLDWDRYSHRYFPYRLRQLPGP 423 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 NAM K F +R+N Y+HDTP LF R +SGC+RV ++L WLL+D WS Sbjct: 424 QNAMGRVKFMFPNRHNVYLHDTPSRELFQQPRRAFSSGCIRVERPLELAAWLLRDQRQWS 483 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 I++ ++ R+ V L +PVH Y +AW + + FRDD+Y D Sbjct: 484 PEAIDKALEERRERTVPLRRGIPVHLQYWTAWVDAEGTLHFRDDLYDRDT 533 >gi|78186201|ref|YP_374244.1| hypothetical protein Plut_0313 [Chlorobium luteolum DSM 273] gi|78166103|gb|ABB23201.1| conserved hypothetical protein [Chlorobium luteolum DSM 273] Length = 546 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 128/353 (36%), Positives = 193/353 (54%), Gaps = 7/353 (1%) Query: 79 EKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS--KGLSVAFD 135 +A+A Y+ I + GGWP LP P L G S V LR RL I GDL+ + + S FD Sbjct: 188 RRALARYRAIAASGGWPVLPPGPALTPGMQSSRVPALRRRLAIVGDLESTLIRDSSTVFD 247 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 + AV+ FQ RHG+ G+ T AMNVP +R+ L+VNL R + L + Y Sbjct: 248 PELSLAVRRFQERHGITVDGVPGLETRSAMNVPASVRVECLKVNLERYRWFLSD-LDSTY 306 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 VLVNI SL+ VE+G+ + VIVGR R+TP+ + + ++FNP WV+P +I+++D Sbjct: 307 VLVNIAGFSLQYVEDGEFRWATRVIVGRPYRKTPVFKADMKAVVFNPRWVVPPTILKQDA 366 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKI 313 + +R+DP +L+ N+I +ID G+ V VDW++ F +R Q G A+ K Sbjct: 367 LPAIRKDPGWLRANHISVIDRNGRTVDPISVDWSARSAATFPYRLQQAAGDDGALGRLKF 426 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y+HDTP+ LF R +SGC+RV N L +L D+ WS I+ + Sbjct: 427 LLPNPYLVYLHDTPKRELFLQSARTFSSGCIRVENPRRLAQLVLADSVRWSPEQIDAQID 486 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDH 426 T +T + L VPV +Y++A + + ++ FR+D+Y D + + P H Sbjct: 487 TGRTRTISLPKPVPVLILYLAAMAEGERVL-FRNDVYRRDTAVLQALQAPLPH 538 >gi|163759199|ref|ZP_02166285.1| hypothetical protein HPDFL43_05525 [Hoeflea phototrophica DFL-43] gi|162283603|gb|EDQ33888.1| hypothetical protein HPDFL43_05525 [Hoeflea phototrophica DFL-43] Length = 250 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 108/224 (48%), Positives = 153/224 (68%), Gaps = 2/224 (0%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGG 93 S ++ IIN +D+FD +R + PI S +TI E+A+ YQDI++RGG Sbjct: 27 STIEAIINSPRRGSWDDQFDAKSSRSVAKTATRYPISSADTIGFVERAVFDYQDIIARGG 86 Query: 94 WPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 WP +P + L +G S V+ LR+RLI SGDL + GLS AFD+YV+ AVK FQ RHGL Sbjct: 87 WPFVPATKKLRMGVSEPEVRLLRQRLIASGDLSANTGLSNAFDSYVDGAVKKFQARHGLP 146 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 P G++ + + +A+NV D+R+ QL+ NL+R++ + +G RYV+VNIPAA +EAVENG+ Sbjct: 147 PDGILGNYSYQALNVSADVRLGQLETNLVRLRSM-SGFLGDRYVMVNIPAAQIEAVENGR 205 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 V LR T IVG++DRQTPIL+S+I+ I+ NPYW PR +KD++ Sbjct: 206 VVLRHTAIVGKIDRQTPILNSKIHEIILNPYWTSPRLDHRKDIV 249 >gi|312144057|ref|YP_003995503.1| ErfK/YbiS/YcfS/YnhG family protein [Halanaerobium sp. 'sapolanicus'] gi|311904708|gb|ADQ15149.1| ErfK/YbiS/YcfS/YnhG family protein [Halanaerobium sp. 'sapolanicus'] Length = 545 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 115/339 (33%), Positives = 179/339 (52%), Gaps = 9/339 (2%) Query: 85 YQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAV 142 Y+D WPE+ L G + V +L + LI G L F + + +AV Sbjct: 200 YRDSGEVEQWPEVDSGSLLAQGAEGIRVSQLSDNLINRGYLSEENIDDKYYFGSQLNAAV 259 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 K FQ HGL G+V TLEA+N+P + RI+Q+ +N+ R + L + +G RY+ VNI Sbjct: 260 KEFQFNHGLSDDGIVGPQTLEALNIPYEKRIKQIMINMERWR-WLPKDLGERYIYVNISD 318 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 SL E+ + + IVG R TP+ I ++FNPYW +P+SI +D++ ++ D Sbjct: 319 YSLNVYEDNNIIMNMKTIVGNEQRSTPVFSDEIRYLVFNPYWYVPKSIAVEDILPSVKND 378 Query: 263 PQYLKDNNIHMI----DEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFY 316 YL +NN + + +++ E++W + + NF F RQ+PG NA+ K F Sbjct: 379 IDYLDENNYKIFAYNNNNTLRKIDASEIEWENIDEDNFNFLVRQEPGDENALGRVKFMFP 438 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 +R N Y+HDTP LF+ R +SGC+R+ I+L ++LLKD W R +EE++K Sbjct: 439 NRFNVYLHDTPSKYLFDETERGFSSGCIRIEKPIELALYLLKDQEEWDRETLEEIMKEDN 498 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + L +P++ Y +AW + FR DIY D + Sbjct: 499 EKTIYLDETIPIYLQYNTAWVDNFGNLNFRKDIYNRDKI 537 >gi|144899601|emb|CAM76465.1| protein conserved in bacteria [Magnetospirillum gryphiswaldense MSR-1] Length = 532 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 112/341 (32%), Positives = 187/341 (54%), Gaps = 15/341 (4%) Query: 81 AIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 A+A Y+ + + GGW +P P + G + +R+RLI++G+L ++ DA + Sbjct: 176 ALARYEKLAADGGWSVIPDGPSIKAGMEDARLPLVRKRLIVTGELATNQSQGNTLDAPLI 235 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 AVK FQ RHG+DP G + TL A+N+ + R+RQ+ NL R + + +++ ++ VN Sbjct: 236 EAVKRFQGRHGIDPDGAIGKQTLTALNISAEERVRQVAANLERWR-WMPRRLDSTHIAVN 294 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 +PAA E V G++ + V+VG + QTP + + + ++ NP W +P SI K+++ L Sbjct: 295 LPAAHFELVREGRIDMAMRVVVGDIQHQTPTMATTMTSVVINPTWTVPPSIATKEILPKL 354 Query: 260 RQDPQYLKDNNIHMID------EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 R+DP YL +NN+ ++D EK + + +DW+ + RQ PG NA+ K Sbjct: 355 RKDPGYLANNNMRILDAFDGDFEKSQGL---GIDWSKYSKFPYRLRQKPGSDNALGQVKF 411 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + ++ Y+HDTP+ F + R + GCVR+ DL LL ++E V Sbjct: 412 NLDNGDDIYLHDTPKRQYFGRIFRALSHGCVRLERPTDLAKLLLPAQAD----KLDEWVL 467 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 T VKL + V+ +Y++AWS +D + FR+D+YG D+ Sbjct: 468 DDTTRTVKLDKPLTVYLMYMTAWSDEDGTVHFREDLYGHDS 508 >gi|330830685|ref|YP_004393637.1| cell wall degradation protein [Aeromonas veronii B565] gi|328805821|gb|AEB51020.1| Cell wall degradation protein [Aeromonas veronii B565] Length = 494 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/327 (38%), Positives = 169/327 (51%), Gaps = 11/327 (3%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L + L G SS + ++R L GD PS G + +D E A+K FQ RHGL Sbjct: 167 WPTLDMPTLRAGESSAELGQIRAMLNELGDSAPSHGDQI-YDGDTEQAIKQFQRRHGLTA 225 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ T +N +R L NL R + L++Q G RYVLVNIP L VE+G Sbjct: 226 DGIIGRQTRSWLNTGPQVRASLLLRNLWR-RDLVDQLAGGRYVLVNIPDYRLSVVESGNE 284 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 S VIVG+ R TPIL S I I+ NP W +PRSI+ KD++ L +DP YL + Sbjct: 285 VFTSRVIVGKEQRATPILASEIRSIVLNPSWHVPRSILSKDILPKLGRDPAYLSREQFEV 344 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 ID +G V E W+ F + RQ PG NA+ K + + Y+H TP L Sbjct: 345 IDSEGNPVQFTEEGWHQALAAGFPYRLRQKPGDHNALGRYKFYLPNNDAIYLHSTPRKAL 404 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH---IEEVVKTRKTTPVKLATEVPV 388 F R +SGC+RV + DL LL D SRY + ++K +T + L T +PV Sbjct: 405 FEQGARAFSSGCIRVEHADDLAELLLAD----SRYQPDKVANILKESQTKWLPLTTPIPV 460 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDNV 415 VY S+W ++ Q R+DIYG D V Sbjct: 461 FTVYWSSWIDENGRQQLRNDIYGFDRV 487 >gi|311695538|gb|ADP98411.1| peptidoglycan-binding domain 1 protein [marine bacterium HP15] Length = 550 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 135/349 (38%), Positives = 187/349 (53%), Gaps = 20/349 (5%) Query: 80 KAIAFYQDILSRGGWPELP------IRPLHLGNSSVSVQRLRERLIISGDLDPSKGL--- 130 K +A QD+ G P LP IRP G+ + +R RL + G+L S Sbjct: 176 KLMAARQDLTRLLGQPWLPLALSPTIRP---GDRDERLNEVRRRLSLLGELAESPATFSD 232 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV-PVDLRIRQLQVNLMRIKKLLEQ 189 +DA +ESAV FQ RHGL+ G++ TL A+NV PV+ R+R + L R + L E Sbjct: 233 PRDYDAELESAVMRFQARHGLEADGLIGKDTLTALNVIPVE-RLRHIDATLERWRWLPE- 290 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 +G YVLVNI L+ VENG LR VIVG+ RQTP+ RI ++FNP W +PR+ Sbjct: 291 SLGDTYVLVNIAGFELKMVENGAEVLRKRVIVGQPFRQTPVFSDRIRYLVFNPTWTVPRT 350 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIFR--QDPGK 304 ++ +D + + +DP YL NI + G + V EVDW S NF ++ Q+PG Sbjct: 351 LMIQDQLPRILRDPNYLSRLNISVYRGWGADRERVDPLEVDWPSLNRNNFPYQLVQEPGP 410 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 NA+ K F ++ + Y+HDTP LF+ R +SGC+RV DL LL P WS Sbjct: 411 QNALGQIKFMFPNQYDVYLHDTPGRGLFSRAERSFSSGCIRVEQPFDLAERLLASAPDWS 470 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 R I+ VV + V L VPVH Y ++W + +QFR+D+Y D Sbjct: 471 REKIDRVVSEAQPQTVVLPEPVPVHIQYWTSWVDNEGRLQFRNDLYNRD 519 >gi|110596970|ref|ZP_01385260.1| Peptidoglycan-binding domain 1 [Chlorobium ferrooxidans DSM 13031] gi|110341657|gb|EAT60117.1| Peptidoglycan-binding domain 1 [Chlorobium ferrooxidans DSM 13031] Length = 560 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 120/343 (34%), Positives = 190/343 (55%), Gaps = 6/343 (1%) Query: 77 QTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-SKGLSVAF 134 Q K + + + GGWP +P + L G + V LR+RL++SGD+ + S + Sbjct: 208 QLRKGLIRDRALAKEGGWPVVPDLTGLKEGATDNRVLPLRKRLVVSGDMTAVANDTSRIY 267 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D + AVK FQ R+G+ G+ +T AMN+PV+ RI Q+++NL R + + + Sbjct: 268 DRRMVEAVKRFQKRNGMVADGVPGPATFRAMNLPVERRIEQIRINLERCRWFMND-LEPT 326 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 YVLVNI SL VE+G+ + VIVG+ R+TP+ + + I+FNP WV+P +I+ KD Sbjct: 327 YVLVNIAEFSLRYVEHGRNRWGTRVIVGQPYRETPVFKADMQYIIFNPRWVVPPTILAKD 386 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTK 312 ++ +R++ YL ++++D G V V+W+ NF +R Q G A+ K Sbjct: 387 VLPAIRKNSSYLSRKKLNILDRNGTVVNPASVNWSQYTGANFPYRLQQTAGDHGALGRIK 446 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +R+ Y+HDTP LF R +SGC+RV N +L +L+D+ WSR I+ + Sbjct: 447 FMLPNRHTVYLHDTPTKDLFEKSSRTFSSGCIRVENPQELARLVLQDSLKWSRERIQAAI 506 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 T KT V L +PV +Y++A++ D I+ F DD+Y D+ Sbjct: 507 NTGKTATVYLPKRIPVFILYLTAFAEGDEIV-FLDDVYNRDSA 548 >gi|304393082|ref|ZP_07375011.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] gi|303294847|gb|EFL89218.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] Length = 492 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/344 (38%), Positives = 178/344 (51%), Gaps = 19/344 (5%) Query: 81 AIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 I FY I GGWP++P L +G V LR+RL I+GD S FDA ++ Sbjct: 56 GITFYTQIAQSGGWPQVPEGGTLSVGVDDPRVPILRQRLYITGDYLGEDTQSTMFDAALK 115 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 AV FQ R+G +P G V +TL +MNVPV+ R+ QL++N R + +G R+VLVN Sbjct: 116 EAVVAFQNRNGQEPDGAVGPATLASMNVPVEKRLEQLRINQRRWDN-MPASLGDRFVLVN 174 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 + LE +E K L V+VG+ TP I I NPYW +P SI K+ L Sbjct: 175 MAGFELEVIEGEKTVLDMKVVVGKDYHSTPEFSDLIKTIEINPYWNVPASIANKE----L 230 Query: 260 RQDPQYLKD-NNIHMIDEKGKEVF-------VEEVDWNSPEPPNFIF--RQDPGKINAMA 309 + D Y+K + D +G EV V ++ W + N F RQ PG NA+ Sbjct: 231 KLD--YMKGAATLAKADSQGYEVVNGDQVVPVSQIAWTKYKDDNLPFRIRQRPGPSNALG 288 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F +++N Y+HDT LF+ VR + GCVR+ +L +LL W R I+ Sbjct: 289 DMKFLFPNKHNVYLHDTQAKSLFSKTVRAFSHGCVRLHRPRELAEYLLAAN-GWDRAKID 347 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 EVV + + T VKL PVH Y++AW + IQFR DIYG D Sbjct: 348 EVVASGERTRVKLEQPTPVHLAYMTAWLGRQGFIQFRPDIYGRD 391 >gi|220931487|ref|YP_002508395.1| Peptidoglycan-binding domain 1 protein [Halothermothrix orenii H 168] gi|219992797|gb|ACL69400.1| Peptidoglycan-binding domain 1 protein [Halothermothrix orenii H 168] Length = 547 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 120/350 (34%), Positives = 193/350 (55%), Gaps = 10/350 (2%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSK- 128 +E + KA++ ++I S+ WP + P L G+ S + LR RL +SGDL + Sbjct: 186 GQELYFRMRKALSHLRNISSKD-WPRVGYGPPLQRGDYSKRIIELRRRLYLSGDLSEEQL 244 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 FD +E AV+ FQ RHGL SG+VD T+EA+N+PV +I ++ +N+ R++ L Sbjct: 245 NTGTYFDRELEKAVRKFQRRHGLKDSGIVDDKTIEALNIPVKEKINKIIINMERLRWLPR 304 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 L V+VNIP L+ + KV L S VIVG + QTP + I I+ NPYW IP Sbjct: 305 DNPDL-CVMVNIPEYKLKVIREDKVILESKVIVGSRENQTPSFNDSIEYIVLNPYWYIPD 363 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF--RQDPG 303 +I + +++ +++DP YL +NI ++ EV + ++++W+ P NF + RQ PG Sbjct: 364 NITRYELLPQIKKDPDYLDKHNIQILSGFEGEVKIIPEDQINWDEVTPENFSYKLRQKPG 423 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ S K F + N Y+HDTP LF R + GC+RV ++L L+ + W Sbjct: 424 PGNSLGSIKFLFPNDFNVYLHDTPSRGLFEYRERALSHGCIRVERPLELAKVLISQS-NW 482 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 S + ++ + ++L VP++ +Y++ W D +I +R+DIY D Sbjct: 483 SYNEVISIINSGNREVIELKNPVPIYLIYLTVWVDDDGVIHYREDIYQRD 532 >gi|308273623|emb|CBX30225.1| hypothetical protein N47_D30340 [uncultured Desulfobacterium sp.] Length = 564 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 110/336 (32%), Positives = 185/336 (55%), Gaps = 8/336 (2%) Query: 85 YQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS-KGLSVAFDAYVESAV 142 Y+ GGWP++P P + G+ + L RL ISGDL + K F +E AV Sbjct: 212 YKKFSENGGWPQIPAGPKMKKGDRGARIAILHSRLQISGDLSKTDKKDPGVFGDILEKAV 271 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 FQ RHGL G+V +TL +NV R +Q+ VN+ R++ L++ G RY+ VNI Sbjct: 272 LRFQSRHGLTEDGIVGHATLYELNVSALARFKQIMVNMERLR-WLQRDFGPRYLFVNIAD 330 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 L V+ L+ V+VG+ RQTP+ ++ ++ NP+W IP + ++D++ L+++D Sbjct: 331 FKLSVVDENASILKMRVVVGKDYRQTPVFEGKMTYLVINPFWTIPPKLAEEDLLPLIKED 390 Query: 263 PQYLKDNNIHMID---EKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYS 317 + +K I + + E +E+ V+W NF ++ Q+PG +NA+ K F + Sbjct: 391 IEVIKRKKIRIYESWKENAREIDPGSVNWKMVNADNFSYKLVQEPGPLNALGRIKFIFPN 450 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 + + Y+HDTP LF+ R +SGC+R+ ++L +LL P W++ + +V+ + +T Sbjct: 451 KFDIYLHDTPARNLFSREKRNFSSGCIRIEKPLELATYLLHGNPNWTKQKLLDVIDSHET 510 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 V ++ + V +Y +AW + I+QFR+DIY D Sbjct: 511 QIVGISNPIAVKILYFTAWVDEQGIVQFRNDIYQRD 546 >gi|194337477|ref|YP_002019271.1| Peptidoglycan-binding domain 1 protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309954|gb|ACF44654.1| Peptidoglycan-binding domain 1 protein [Pelodictyon phaeoclathratiforme BU-1] Length = 549 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 123/354 (34%), Positives = 192/354 (54%), Gaps = 8/354 (2%) Query: 77 QTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDP-SKGLSVAF 134 Q K + Y+ I GGWP L P L G V LR+RL +SGD+ + S + Sbjct: 190 QLRKGLVRYRTIARAGGWPVLAEGPKLQEGARGKRVMLLRQRLRVSGDIAVLNTDTSTVY 249 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 + V AVK FQ R+G+ G+V ++TL MN+PV+ RI ++++NL R + L + + Sbjct: 250 NREVVEAVKHFQKRNGMVADGVVGATTLRVMNIPVERRIDEIRLNLERYRWFL-RDLEPT 308 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++VNIP +L+ +ENG+ + VI G+ R+TP+ + + ++ NP WVIP +I+ KD Sbjct: 309 AIMVNIPRFTLQYIENGQDKWETRVITGKPPRETPLFKADMQYVILNPRWVIPPTILAKD 368 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTK 312 + LR+ YL + +ID G + V+W+ NF +R Q G A+ K Sbjct: 369 ALPALRKSNSYLNRKRLTIIDRNGAVIDPVSVNWSQYSGGNFPYRLQQSSGDHGALGRIK 428 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +R Y+HDTP LF R +SGCVRV N +DL +L+D+ WS+ I + Sbjct: 429 FLLPNRYIVYLHDTPNKELFAASKRLFSSGCVRVENPVDLATLVLQDSVRWSKVKILSAI 488 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII--PLPE 424 K+ KT V L +PV+ +Y++ +P+ + FRDD+Y D + + PLP+ Sbjct: 489 KSGKTKTVLLPKRIPVYLLYLTV-TPEGDELFFRDDVYNRDERLLKALNKPLPQ 541 >gi|145219195|ref|YP_001129904.1| peptidoglycan binding domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145205359|gb|ABP36402.1| Peptidoglycan-binding domain 1 protein [Chlorobium phaeovibrioides DSM 265] Length = 550 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 122/343 (35%), Positives = 184/343 (53%), Gaps = 12/343 (3%) Query: 80 KAIAFYQDILSRGGWPELP----IRPLHLGNSSVSVQRLRERLIISGDLDP-SKGLSVAF 134 +A+A Y+ I GGWP +P IRP G S V +R RL ++GD + K SV Sbjct: 194 EALARYRQIEQAGGWPVVPGGQAIRP---GQSDPRVPLIRRRLSVTGDFEGRGKESSVVL 250 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D+ + +A++ FQ RH L G+ +TL AMNV R++QL+VNL R + + Q + Sbjct: 251 DSELAAAIRNFQKRHALQADGVAGGATLAAMNVTARERVQQLRVNLERYRWFVGQ-LEPT 309 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +VLVNI SL+ V G + + VIVG+ R+TP+ + + ++FNP WV+P +I+ +D Sbjct: 310 FVLVNIAGFSLQYVHEGSLRWSTRVIVGQPYRKTPVFKADMYSVLFNPRWVVPPTILAED 369 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTK 312 + +RQDP YL + +ID KG V ++WN+ F +R Q G A+ K Sbjct: 370 ALPAIRQDPGYLSRKQLQVIDGKGSPVDPSSINWNAFGAAAFPYRLQQKAGDHGALGRIK 429 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +R+ Y+HDTP LF R +SGC+RV N L +L D+ W+ I + Sbjct: 430 FVMPNRHIVYLHDTPTKDLFEKSSRTFSSGCIRVENPARLAELVLDDSLKWNGGAIRSAI 489 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 T KT L +PV +Y++A + +D + F +DIY D Sbjct: 490 ATGKTHSEPLPRRIPVFILYLTAVAERDEVF-FLEDIYDRDGA 531 >gi|119357927|ref|YP_912571.1| peptidoglycan binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119355276|gb|ABL66147.1| Peptidoglycan-binding domain 1 protein [Chlorobium phaeobacteroides DSM 266] Length = 563 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 119/343 (34%), Positives = 189/343 (55%), Gaps = 12/343 (3%) Query: 79 EKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDL-DPSKGLSVAFDA 136 +K +A Y+ I+ GGW ++ + + G+ V+++R RL SGDL S S F Sbjct: 206 KKGLAHYRVIVKTGGWQKVTEGKKIKEGDRDNRVRQIRRRLQESGDLVFRSADTSRVFSK 265 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL---LEQKMGL 193 + AV FQ R+GL G + T+ MN+ RI Q+++N+ R + LEQ Sbjct: 266 AMADAVVRFQKRNGLSVDGAAGAETIREMNISAAERIEQIRINMERYRWFIGDLEQ---- 321 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R VLVNIP +L+ ++NG+ + VIVG+ R+TP+ + + I+FNP WVIP +I+ K Sbjct: 322 RAVLVNIPGFTLQYIDNGQPRWETRVIVGKTGRETPLFKADMQYIVFNPQWVIPPTILAK 381 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMAST 311 D + +R+ YL N+ +ID G+ V V+W+ N +R Q G ++ Sbjct: 382 DALPGIRKSRSYLYSRNLKVIDRNGRVVDPATVNWSQYTAANLPYRLQQTAGDHGSLGRI 441 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K +++ Y+HDTP LF R +SGC+RV+N ++L +L+D+ W+ I Sbjct: 442 KFMLPNKHIVYLHDTPHKELFQKSTRNFSSGCIRVQNPLELAELVLQDSVKWNSDAINAA 501 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +KT KT+ V L +PV+ +Y++A+ P+D I FR D+Y DN Sbjct: 502 IKTGKTSNVNLPKHIPVYLLYLTAF-PQDDAIHFRGDVYNRDN 543 >gi|46202872|ref|ZP_00052464.2| COG2989: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 265 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 95/228 (41%), Positives = 147/228 (64%), Gaps = 2/228 (0%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +G R+V+ NIPAA ++ VENG+V VG++DRQ+PI++++ +I FNP W +P SI Sbjct: 11 LGRRFVITNIPAALVQTVENGQVVTLHAAGVGKIDRQSPIMNTKATQINFNPTWTVPASI 70 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK-INAMA 309 ++KD++ +++DP YL DN I ++ G+E+ + V+W S E + +RQD G N+M Sbjct: 71 VKKDLIPKMQKDPNYLTDNKIRIL-SGGQEISPKSVNWFSDEGTRYTYRQDSGADFNSMG 129 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 +I + +MHDT +F + RF +SGCVRV+N+ + WLLKDTP W R H+E Sbjct: 130 VVRINIPNPYGVFMHDTNSRGVFGDDFRFISSGCVRVQNVREYITWLLKDTPGWDRAHVE 189 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 + V++ + L+ VPV++ YI+AW+ D +QFRDDIY D V+V Sbjct: 190 QAVESGQRIDATLSQPVPVYWTYITAWATPDGTVQFRDDIYKRDGVNV 237 >gi|149911942|ref|ZP_01900540.1| hypothetical protein PE36_11037 [Moritella sp. PE36] gi|149804989|gb|EDM65018.1| hypothetical protein PE36_11037 [Moritella sp. PE36] Length = 409 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 133/400 (33%), Positives = 213/400 (53%), Gaps = 21/400 (5%) Query: 24 LSLVEKPIHASVLDEIINESYHSIVND---RFDNFLARVDMGIDSDIPIISKETIAQTEK 80 +S++ K H + N +++ VN + DN L ++D SD P+ SK+ + + + Sbjct: 18 VSMLGKTTHMTNSMNTTNNKHYAYVNHSNIQPDNLLPKMDAV--SDAPV-SKKVLQFSSR 74 Query: 81 AIAFYQDILS-RGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 A Y + LS + W ++ + R LH+G+SS +V + RLI+ GD + S S + + Sbjct: 75 AS--YLNWLSVQYSWEDIALSRLLHIGDSSAAVHEIHSRLILLGDSEESLRFSDVYTVEI 132 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 +AV+ FQ RHGL ++ TL+ +N+ R L+ N M K + RY+LV Sbjct: 133 AAAVRNFQRRHGLKADAIIGPDTLKWLNINPQRRAELLRQN-MEEKIHFMANLSDRYLLV 191 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 NIPA L +NG++ LRS VIVG+ + TPIL S I+ ++ NP W +PRSI++ D++ Sbjct: 192 NIPAYELLLSDNGEIALRSRVIVGKPKKPTPILTSEISSMVINPSWRVPRSILEDDLLPK 251 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFY 316 ++ + ++ N + + + + + +W F +R Q PG NA+ K F Sbjct: 252 VKMNGEFFSQRNFKVFNYQNQTIEKSPQEWQKLAYGQFPYRLEQMPGTQNALGRYKFYFP 311 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTPTWSRYHIEEVV 372 + + Y+HDT P LF+N R +SGC+R+ + +L W L+ + P WSR I Sbjct: 312 NDFSVYLHDTSNPQLFSNANRALSSGCIRIEKVDELANWIANSLVDNKPLWSRLKINR-- 369 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 +T K P L +PVH VY +AW + + QFRDDIY L Sbjct: 370 ETTKWFP--LNDVLPVHLVYWTAWIDDNGLSQFRDDIYAL 407 >gi|83311306|ref|YP_421570.1| hypothetical protein amb2207 [Magnetospirillum magneticum AMB-1] gi|82946147|dbj|BAE51011.1| Uncharacterized protein conserved in bacteria [Magnetospirillum magneticum AMB-1] Length = 535 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 114/324 (35%), Positives = 170/324 (52%), Gaps = 7/324 (2%) Query: 94 WPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 WP +P L G + V LR RLI SGDL +DA + AVK FQ RHGLD Sbjct: 193 WPTIPDGAKLVPGETDERVPLLRRRLIASGDLADGLAEGKIYDATLAEAVKRFQARHGLD 252 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 P V TL +NVP D R+RQ+ NL R + + + G +V VNI A +E VE+G Sbjct: 253 PDATVGGKTLAHLNVPADARVRQITANLERWR-WMPRSFGRHHVAVNIAAQQMEVVEDGS 311 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V + V+VG TP +++ ++ ++ NP W +P SI K+++ LR+DP YL + + Sbjct: 312 VAMVMRVVVGDTKHPTPSMNTTMSSVVLNPAWRVPTSIANKEILPKLRKDPNYLTSSKLQ 371 Query: 273 MID--EKGKEVFVEEVDWNS-PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 ++D E E + VDWN+ + + RQ PG NA+ K ++ YMHDTP Sbjct: 372 IVDYPEGSPESAGDGVDWNAIGKKFPYRLRQPPGPDNALGQLKFNLTDSDDIYMHDTPNR 431 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 F+ R + GCVR+ ++L +L W ++ R T + L +PV+ Sbjct: 432 RAFSRSYRALSHGCVRLERPVELGELMLG--ARWQGKLAHDINANRSTRTLMLERTIPVY 489 Query: 390 FVYISAWSPKDSIIQFRDDIYGLD 413 +Y +AW+ ++ + FRDD+YG D Sbjct: 490 LMYWTAWADENGNLHFRDDLYGHD 513 >gi|78189746|ref|YP_380084.1| hypothetical protein Cag_1790 [Chlorobium chlorochromatii CaD3] gi|78171945|gb|ABB29041.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3] Length = 563 Score = 199 bits (505), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 116/340 (34%), Positives = 188/340 (55%), Gaps = 7/340 (2%) Query: 79 EKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSK--GLSVAFD 135 +K +A Y++I GGW +P L G+ V LR+RL SGD+ S + ++ Sbjct: 216 KKELARYREIAKNGGWSAIPAGTLLQEGSRDARVPLLRQRLAASGDISSSAVADTTTLYN 275 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 V AVK FQ +HGL G+V ++TL A+NV D RI QL+VNL R + LL + Sbjct: 276 PDVTKAVKRFQQQHGLWSDGVVGATTLRAINVSADERIGQLRVNLERCRWLL-HDISPTS 334 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 V+VNIPA +L E G + VIVG+ R TP+ + + ++ NP WV+P +++ KD+ Sbjct: 335 VIVNIPAYTLHYFEQGDRRWSTRVIVGQPKRPTPVFRADMQLLILNPRWVVPSTVLAKDV 394 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKI 313 + + +DP YL+ + ++DE G + + W+S +R Q G A+ K Sbjct: 395 LPAVIKDPAYLRKKKLRVVDENGTIIDPATIKWSSYSASTLPYRLQQKSGDDGALGRIKF 454 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 +R Y+HDTP+ LF R +SGC+RV++ +L +L+ + SR +E +K Sbjct: 455 LMPNRYTIYLHDTPDKALFQKTQRAFSSGCIRVQHPEELARLVLRHSNRESRPSLESRIK 514 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + T+ ++L ++PV+ +Y++A P ++ +FR+DIY D Sbjct: 515 SGATSTIRLPQQIPVYLIYLTAL-PCNNKAEFREDIYHRD 553 >gi|117619072|ref|YP_855763.1| cell wall degradation protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560479|gb|ABK37427.1| cell wall degradation protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 433 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 131/329 (39%), Positives = 166/329 (50%), Gaps = 15/329 (4%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L + L G S + ++R L GD P +DA AVK FQ RHGL Sbjct: 106 WPTLTMPTLRAGEVSPELGQIRSILNELGDTAPRHD-DATYDAETLQAVKQFQRRHGLTA 164 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ T +N ++R L NL R + L++Q G RYVLVNIP L VE+G Sbjct: 165 DGIIGRQTRSWLNTGPEVRASLLLRNLWR-RDLVDQLSGARYVLVNIPDYRLSVVESGNE 223 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 S VIVG+ R TPIL S I I+ NP W +PRSI+ KD++ L +DP YL + Sbjct: 224 VFTSRVIVGKEQRATPILASEIRSIVLNPAWHVPRSILSKDILPKLGRDPAYLNREQFEV 283 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNT--YMHDTPEP 329 ID +G V E W F + RQ PG NA+ K FY NN Y+H TP Sbjct: 284 IDGEGNPVQFTEEGWQQALASGFPYRLRQKPGDHNALGRYK--FYLPNNEAIYLHSTPRK 341 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK---LATEV 386 LF R +SGC+RV + DL LL D SRY ++V K T K L T + Sbjct: 342 ALFEQGARAFSSGCIRVEHADDLAELLLAD----SRYQPDKVASILKETQTKWLPLTTPI 397 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 PV VY S+W +D Q R+DIYG D V Sbjct: 398 PVFTVYWSSWIDEDGRQQLRNDIYGFDRV 426 >gi|193212014|ref|YP_001997967.1| peptidoglycan-binding domain 1 protein [Chlorobaculum parvum NCIB 8327] gi|193085491|gb|ACF10767.1| Peptidoglycan-binding domain 1 protein [Chlorobaculum parvum NCIB 8327] Length = 583 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 121/355 (34%), Positives = 192/355 (54%), Gaps = 25/355 (7%) Query: 80 KAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRL---RERLIISGDLDPSKGLSVA--- 133 K +A Y+ + + GGW +P P +G+ +R+ R+RL+++GDL GL+++ Sbjct: 202 KGLAKYRKVAAAGGWKPVPAGP-RIGDVGQIDERMPLIRKRLVVTGDLI-EDGLTISAPA 259 Query: 134 -------------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 + A + AVK FQ RHGL+ G++ + T AM VPV+ I Q+++NL Sbjct: 260 NSADSTAARQAFVYTAELFDAVKAFQERHGLEVDGIIGTETAGAMAVPVEEWIDQIRINL 319 Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 R + +G YV+VNIP+ S+E V + V +S VIVG+ + QTP+ + I ++F Sbjct: 320 ERYR-WYSSSLGSTYVMVNIPSFSVEFVRDDSVRWKSRVIVGKPNLQTPVFKAEIQSVIF 378 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR- 299 NP WVIP I+ K+ + ++++ YL + + +++ +GK V V+W + + F +R Sbjct: 379 NPRWVIPSGILAKEALPAIKKNLDYLSRHQLTVVNNQGKPVDPSSVNWAAYQGRGFPYRL 438 Query: 300 -QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 Q G A+ K +R YMHDTP LF R + GCVRV+N +L V L Sbjct: 439 VQASGDDGALGRIKFNMPNRFTVYMHDTPTKPLFERSYRAFSHGCVRVQNPNELGVLLFN 498 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 D W IE ++ T KT + L +PV+F+Y +A+ D+ I FR D+Y D Sbjct: 499 DPVKWDMNRIEAMIDTGKTRTINLPERIPVYFMYQTAFPDGDN-IDFRYDVYDRD 552 >gi|21674674|ref|NP_662739.1| hypothetical protein CT1862 [Chlorobium tepidum TLS] gi|21647879|gb|AAM73081.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 571 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 126/352 (35%), Positives = 186/352 (52%), Gaps = 21/352 (5%) Query: 80 KAIAFYQDILSRGGWPELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 K + Y+ I GGW + P +G + +R+RLI+SGDL K ++ A D+ Sbjct: 202 KNLLRYRKIAENGGWQPVYQGPNIEKVGQVDKRMPLIRQRLILSGDLAADKLVAPA-DSS 260 Query: 138 VESA----------------VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 + SA V FQ HGL G++ TL AMN P +LR Q++VNL Sbjct: 261 LSSAAPVPSDQVYTQELFDAVLAFQQSHGLSADGIIGLETLNAMNYPAELRADQIRVNLE 320 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R ++ +G YV+VNIPA SL+ V++ +V +S VIVG+ D QTPI ++I + FN Sbjct: 321 R-ERWYGGILGGTYVMVNIPAFSLKYVKDNEVRWKSRVIVGKPDTQTPIFAAQIQSVTFN 379 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P+WVIP I+ K+ + +R+D YL + + ++D GK V V+W S + Q Sbjct: 380 PHWVIPPGILSKEAIPAIRKDIGYLAKHQLTVVDSNGKPVDPSRVNWYSDGGFPYRLVQA 439 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 G ++ K +R YMHDTP LF +R + GCVRV +L L++D+ Sbjct: 440 SGDDGSLGRIKFNMPNRFMVYMHDTPTKPLFERSMRAYSHGCVRVDRPYELAEQLMRDSK 499 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 WS IE + T KT + L +VPV+F Y +A++ + I FR+DIY D Sbjct: 500 NWSLSKIEAAINTGKTRTIPLTVKVPVYFFYQTAFADGNK-IGFRNDIYDRD 550 >gi|85860925|ref|YP_463127.1| peptidoglycan binding protein [Syntrophus aciditrophicus SB] gi|85724016|gb|ABC78959.1| peptidoglycan binding protein [Syntrophus aciditrophicus SB] Length = 567 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 124/356 (34%), Positives = 184/356 (51%), Gaps = 16/356 (4%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPEL--PIRPLHLGNSSVSVQRLRERLIISG------ 122 S A KA++ Y+DI R WP + IR L G+ S V LRERL + Sbjct: 202 SSPAYANLRKALSKYRDIERRRKWPVMMEGIR-LKKGDRSEQVALLRERLDVPEVFPFWE 260 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 D + +G FD Y+E AVK FQ HGL G+ S TLEAMNV R+RQ++VNL R Sbjct: 261 DREDGEG-KYLFDEYLERAVKAFQKSHGLIADGVAGSETLEAMNVTAAERVRQIKVNLER 319 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ + + G R V++NIP L +E K S ++VG+ + TP+ SRI + NP Sbjct: 320 LRWIPDDP-GDRAVIINIPEFRLRVLEKEKEVFNSRIVVGKYAQNTPVFGSRITHFILNP 378 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV---EEVDWN--SPEPPNFI 297 YW +PRSI ++++ L++Q P+YL ++ ++ G + + +DW + N+ Sbjct: 379 YWHVPRSIAVEEILPLIKQSPEYLNWEDMKVLSGSGAKTRIVPPWTIDWENMTAREFNYH 438 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 RQDPG N + K F + + Y+HDTP LF R + GC+RV N ++L V LL Sbjct: 439 LRQDPGPRNPLGRIKFYFPNPYDVYLHDTPYLHLFEQKKRNFSHGCIRVENPVELAVVLL 498 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +R + ++T K +L V + Y + W+ D + FR DIY D Sbjct: 499 GGNSIETRKQLLSAIETGKRKQFQLRQPVSIRVFYFTTWAEADGTVHFRKDIYNHD 554 >gi|120555804|ref|YP_960155.1| peptidoglycan binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120325653|gb|ABM19968.1| Peptidoglycan-binding domain 1 protein [Marinobacter aquaeolei VT8] Length = 560 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 119/332 (35%), Positives = 179/332 (53%), Gaps = 16/332 (4%) Query: 94 WPEL----PIRPLHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQ 146 WP + IRP G++ + +R RL + GDL P +D + +A+ LFQ Sbjct: 203 WPAIVSGPSIRP---GDTDNRIPDIRRRLALLGDLSGDSPEASNHQHYDDALATAIPLFQ 259 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 RHGL+P G+V TL A+N+ RI +L NL R + L E +G YV+VNI L Sbjct: 260 ARHGLEPDGIVGRDTLTALNLLPLERIYRLDANLERWRWLPE-SLGETYVVVNIAGFELV 318 Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 VE+G+ R VIVGR RQTP+ RI ++FNP W +PR ++ +D + ++R DP+YL Sbjct: 319 LVESGEQVHRQRVIVGRPYRQTPVFSDRIRYLVFNPTWTVPRKLMIEDQLPIIRSDPEYL 378 Query: 267 KDNNIHMIDEKG---KEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNT 321 + + G EV E+DW NF ++ Q PG NA+ K F ++ + Sbjct: 379 ERLGFKVFRGWGANQSEVDPAEIDWTELSKNNFPYQLIQQPGPQNALGQVKFMFPNQYDI 438 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK 381 Y+HDTP LF+ + R +SGC+R+ +L LL +T W++ IE+ + T + V Sbjct: 439 YLHDTPAQSLFSRLERTLSSGCIRLERPFELAERLLANTNGWNKKRIEQTLATAEPATVV 498 Query: 382 LATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L+ VPV+ Y + W ++QFR+D+Y D Sbjct: 499 LSEPVPVYLQYWTTWIDPAGVLQFRNDVYDRD 530 >gi|194334694|ref|YP_002016554.1| peptidoglycan-binding domain 1 protein [Prosthecochloris aestuarii DSM 271] gi|194312512|gb|ACF46907.1| Peptidoglycan-binding domain 1 protein [Prosthecochloris aestuarii DSM 271] Length = 565 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 126/379 (33%), Positives = 198/379 (52%), Gaps = 24/379 (6%) Query: 53 DNFLARVDMGIDSDIPIISKETIA-------QTEKAIAFYQDILSRGGWPELPIRP--LH 103 D L R+ I+ D + E I +KA+A Y+D S GGWP +P P H Sbjct: 172 DGLLWRLQNAIEGDSIAAALEQIRPVHPKYLSLKKALARYRDYESDGGWPSIPAGPSIRH 231 Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAF--DAYVES-----AVKLFQMRHGLDPSGM 156 G+ + LR RL I+G+ + +F A V S AV +FQ R+GL+ G+ Sbjct: 232 EGDRDERIPVLRRRLEITGEAVSLATVDTSFADSAMVYSKELVDAVMVFQRRNGLEVDGV 291 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 V TLEA+N+ R+ Q+++NL R + + K+ +++VNI +++ VENG + Sbjct: 292 VGPRTLEALNISASQRVEQIRINLERYRWFI-TKLEPTFIMVNIAGFTIQYVENGALTWS 350 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 S VIVG +TP+ + + ++FNP W +P I++K+ + ++ D YL N + +ID Sbjct: 351 SRVIVGEPFWKTPVFRADMRYLIFNPSWNVPPGILKKEALPSMKSDGGYLSRNGLQVIDR 410 Query: 277 KGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 G V +DW +F + RQ PG NA+ K F +R+ Y+HDTP LF+ Sbjct: 411 NGNVVDPSSIDWAGYSAGSFPYRLRQPPGVRNALGRVKFMFPNRHFVYLHDTPGKHLFDR 470 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 R + GC+R+ N +DL LL WS IE + + KT V L+ +PV +Y++ Sbjct: 471 SERAFSHGCIRLENPLDLAGVLLG----WSPEQIESALSSGKTRTVNLSRPIPVFLLYLT 526 Query: 395 AWSPKDSIIQFRDDIYGLD 413 A + D ++ FR+D+Y D Sbjct: 527 AVAEGDEVL-FRNDVYNRD 544 >gi|309389689|gb|ADO77569.1| ErfK/YbiS/YcfS/YnhG family protein [Halanaerobium praevalens DSM 2228] Length = 546 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 122/405 (30%), Positives = 210/405 (51%), Gaps = 14/405 (3%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFL---ARVDMGIDSDIPIISKETIA 76 L + + I+A ++ E N S+ + + N L ++ ++S++P + Sbjct: 133 LDLASDYLNGKINAEIIIEDNNYQADSLQSKKLLNALLAKENIEESLNSNLP--KTKAYQ 190 Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLHLGNS-SVSVQRLRERLIISGDL-DPSKGLSVAF 134 + + + +Y+D WP++ + + NS V V+ LR+ L L + + F Sbjct: 191 KLREKLFYYRDSGQINAWPQIKGKQILTKNSKGVRVKELRQNLKAKNYLTENNSKQDYIF 250 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 ++ AV FQ+ +GL P G+V TL+A+N+P+ RI+QL VN+ R + L E +G R Sbjct: 251 TEQLKEAVMKFQVDYGLTPDGVVGPKTLKALNIPLSERIKQLIVNMERWRWLPEN-LGDR 309 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y+ VNI L+ E + + IVG+ R TP+ I ++ NPYW +P +I +D Sbjct: 310 YIYVNIANYKLKLYEEQQKIMEMKTIVGKKQRSTPVFSDEIKYLVLNPYWYVPHTIAVED 369 Query: 255 MMALLRQDPQYLKDNNIHMIDEKG----KEVFVEEVDWN--SPEPPNFIFRQDPGKINAM 308 + L+++D YL+D N + G +++ +VDW + + N++ RQ+PG NA+ Sbjct: 370 KLPLIKKDLNYLEDKNYSLFKYIGNNRLEKIDPTKVDWTKITKDNFNYLLRQNPGDQNAL 429 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K F ++ + Y+HDTP LF+ R +SGC+R+ I+L +LL D W R +I Sbjct: 430 GRIKFMFPNKFSIYLHDTPSQYLFSEQERSFSSGCIRIEKPINLAEYLLIDQEKWGRENI 489 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 E +K K V L + ++ Y +AW K++ + FR+DIY D Sbjct: 490 EAAIKKDKEKIVYLKKPIKIYLQYNTAWVDKENNLNFREDIYNRD 534 >gi|77918680|ref|YP_356495.1| hypothetical protein Pcar_1075 [Pelobacter carbinolicus DSM 2380] gi|77544763|gb|ABA88325.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380] Length = 598 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 111/343 (32%), Positives = 186/343 (54%), Gaps = 14/343 (4%) Query: 82 IAFYQDILSRGGWPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV-AFDA 136 +A Y+ + GGWP L P+RP G+ + LR L++ GDL+ S+ S DA Sbjct: 220 LAHYRQLALGGGWPVLADGPPVRP---GDRDARLPALRRFLVLVGDLESSRQSSGWRMDA 276 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 +A+K FQ+RHGL G++ TL +NVPV RI QL +NL R ++ +Q G RY+ Sbjct: 277 VTVAALKRFQVRHGLRADGVLGKDTLAQINVPVGRRIEQLGLNLER-ERWPKQDAGDRYL 335 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 V+I +L V+ G+ +R V+VG R+TP+ + + ++F PYW +P +I+++D + Sbjct: 336 QVDITDFTLTLVDGGREIMRMPVVVGTSFRRTPVFSALMTYLVFAPYWTVPPTILEQDKL 395 Query: 257 ALLRQDPQYLKDNNIHMI---DEKGKEVFVEEVDWNSPEPPNF--IFRQDPGKINAMAST 311 +++ +P YL ++ ++ + + + +DW + +F + RQ PG N + Sbjct: 396 PVIKANPDYLDSHHYEIVAWGKDPNRTIDAASIDWKTITAKSFPGMLRQKPGPWNPLGKV 455 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F + + Y+HDTP LF R +SGC+R+ ++L ++LL W I++ Sbjct: 456 KFMFPNAYHVYLHDTPAQYLFAKQQRTFSSGCIRIARPLELAIYLLDGQKGWDSERIKKE 515 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + K V+L +PVH +Y +AW +QFR+D+Y D Sbjct: 516 MAASKPYTVRLKNPIPVHILYRTAWVDVQGRLQFRNDVYERDQ 558 >gi|218781317|ref|YP_002432635.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfatibacillum alkenivorans AK-01] gi|218762701|gb|ACL05167.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfatibacillum alkenivorans AK-01] Length = 563 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 105/285 (36%), Positives = 162/285 (56%), Gaps = 6/285 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 F+ +E+A+K FQ GL+ G+ +TL A+N I ++ NL R + + Q +G Sbjct: 267 FNESLEAALKKFQASWGLEADGVCGPATLHAVNRSEKDNIAAIRANLERWR-WMPQNLGD 325 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R++LVNI L VENG+ L IVG++ R+TP+ R+ ++ +PYW +P SI +K Sbjct: 326 RHILVNIADFHLAVVENGEELLAMKAIVGKLYRKTPVFSGRLTYLVISPYWDVPPSIARK 385 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPNFIFR--QDPGKINAM 308 D + L+++DP Y N+ + G +E+ VDW + P NF +R Q PG NA+ Sbjct: 386 DKLPLMQKDPNYFTANHFLVYQGWGADSREIDPASVDWKALGPNNFPYRLRQKPGPGNAL 445 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K F +++N Y+HDTP LF R +SGC+R+++ I L +LLKD P W+R I Sbjct: 446 GRIKFMFPNKHNVYIHDTPSHDLFAKSQRNFSSGCIRIQDPIGLAEYLLKDAPGWNREAI 505 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 E+ V + V L+ +PVH +Y +A+ + FR+DIYG D Sbjct: 506 EDAVDNKIEKTVSLSRPIPVHIMYFTAFGDTRGAVHFRNDIYGRD 550 >gi|189501015|ref|YP_001960485.1| Peptidoglycan-binding domain 1 protein [Chlorobium phaeobacteroides BS1] gi|189496456|gb|ACE05004.1| Peptidoglycan-binding domain 1 protein [Chlorobium phaeobacteroides BS1] Length = 566 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 111/349 (31%), Positives = 189/349 (54%), Gaps = 16/349 (4%) Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRPL--HLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + + ++ +A Y+ + + GGW +P P +G + LR RL ISG+++ + Sbjct: 204 SYSSLKEGLARYRRLAADGGWGTVPEGPTIKEIGQYDARIPALRGRLEISGEIEQLSKVD 263 Query: 132 VAF-------DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 ++ ++ AVK FQ RHGL G V TL A+NVPV+ R+ Q+++NL R + Sbjct: 264 TSYADEAMRYSVGLQEAVKKFQNRHGLQEDGEVGPKTLRALNVPVEKRVEQIRINLERYR 323 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + QK+ Y+LVNI ++ E G S VIVG +TP+ +++ ++FNP W Sbjct: 324 WFV-QKLEPTYLLVNIAGFNITYFEQGAFKWGSRVIVGEPFWKTPVFKAQMQYVIFNPSW 382 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +P I++K+ + +R+DP YL + + ++D G V V+W S ++ RQ PG Sbjct: 383 NVPPGILRKEALPAIRKDPGYLSRHGLQVVDRNGNVVNPGSVNWAS-GAQSYRLRQPPGS 441 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 NA+ K F +++ Y+HDTP LF+ R + GC+R++N +DL LL WS Sbjct: 442 RNALGRVKFMFPNKHLVYLHDTPGKHLFDKSSRAFSHGCIRLQNPLDLAELLL----GWS 497 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + + V +T + L T++PV +Y++A + + +QF++D+Y D Sbjct: 498 GEKVRQTVSAGRTRRINLPTKLPVFLLYLTAVAEGEE-VQFKNDVYSRD 545 >gi|256823023|ref|YP_003146986.1| ErfK/YbiS/YcfS/YnhG family protein [Kangiella koreensis DSM 16069] gi|256796562|gb|ACV27218.1| ErfK/YbiS/YcfS/YnhG family protein [Kangiella koreensis DSM 16069] Length = 570 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 119/328 (36%), Positives = 177/328 (53%), Gaps = 9/328 (2%) Query: 94 WPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES----AVKLFQMR 148 WP + ++P + + ++ + RL+ GDL F E AV+ FQ+R Sbjct: 229 WPAIDLQPSIKPQMADPRLEAIAVRLMFWGDLPADWAYLAPFPMRYEDGLIRAVEHFQLR 288 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL G++ T+ A+N+ RI QL VNL +I+ E K R + VNIP+ L A+ Sbjct: 289 HGLVADGVLGKKTIAALNITPQQRIEQLVVNLEQIR-WHELKPASRLIKVNIPSFELLAL 347 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 ENG+V LR VIVG++ R+TPI +I ++ NP WV+P + KD + L++Q+PQYL D Sbjct: 348 ENGEVRLRMPVIVGQLKRKTPIFEEKIQYLVLNPTWVVPWELATKDKLPLIQQNPQYLLD 407 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDT 326 N + + K +DW NF +R Q PG NA+ K F + Y+HDT Sbjct: 408 NQFSVYLQDFKIEDPTRIDWAQVTRANFPYRLVQAPGSGNALGQVKFMFPNPYEVYLHDT 467 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P+ LFNN +R +SGC+R++ +DL W+L+ T +S IE + + T + L + V Sbjct: 468 PDKSLFNNELRAFSSGCIRIQRPLDLLWWILR-TNGFSDIDIENQLNKKHTNTISLTSPV 526 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLDN 414 P+ Y +A+ D IQFR DIY D Sbjct: 527 PIRLEYRTAYWGLDQTIQFRADIYQRDT 554 >gi|163793880|ref|ZP_02187854.1| Peptidoglycan-binding domain 1 protein [alpha proteobacterium BAL199] gi|159180991|gb|EDP65508.1| Peptidoglycan-binding domain 1 protein [alpha proteobacterium BAL199] Length = 515 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/366 (32%), Positives = 188/366 (51%), Gaps = 17/366 (4%) Query: 64 DSDIPIISKETIA-------QTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLR 115 D+D P+ + E + + +A Y+ + GGWP +P+ L G V +R Sbjct: 142 DADDPVRAIEQAGPSNPIYHRLRRLLANYRGLAVHGGWPSVPVGDALKPGMRDPRVAAIR 201 Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 RL++S L + +D A++ FQ RHGL+ G+V + TL A+NVP++ RI Q Sbjct: 202 TRLMLSESLTLTSDDPEFYDDGFGLAMRGFQRRHGLEDDGVVGTRTLAALNVPIEHRIEQ 261 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 + VN+ R + + + G +V VN+ L+ V G V + V+VGR R+TP+ RI Sbjct: 262 IVVNMERFR-WMPDEFGDDHVFVNLADFMLDYVRRGLVAMSMRVVVGRQYRETPVFSDRI 320 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI-DEKGKEVFVE--EVDWNSPE 292 + NP W +P I +D+++ +R +P YL + + ++ VDW+S Sbjct: 321 RYLELNPTWTVPAKIASEDLLSKIRANPSYLSSAGFEVFAGSRDNATLIDPASVDWSSLA 380 Query: 293 PPNF--IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 F RQ PG+ NA+ K F +R + Y+HDTP LF VR +SGC+R+ + Sbjct: 381 KGRFPYTLRQQPGRQNALGRVKFMFPNRFDIYLHDTPARELFRRSVRTFSSGCIRLEKPL 440 Query: 351 DLDVWLL-KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 DL LL D R I V+++ KTT + L V VH Y++AW + ++FRDD+ Sbjct: 441 DLASRLLVADGQDPDR--IGSVLESAKTTRINLREPVAVHLTYLTAWVGEGGTVEFRDDV 498 Query: 410 YGLDNV 415 YG D + Sbjct: 499 YGRDAL 504 >gi|254512058|ref|ZP_05124125.1| peptidoglycan-binding domain 1 [Rhodobacteraceae bacterium KLH11] gi|221535769|gb|EEE38757.1| peptidoglycan-binding domain 1 [Rhodobacteraceae bacterium KLH11] Length = 533 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 117/348 (33%), Positives = 193/348 (55%), Gaps = 11/348 (3%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPE-LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 S++ IA ++ A + ++++GGW E +P+ L LG++ +V +LR RL+ G L P+ Sbjct: 173 SRQYIALMKQKKAL-EALIAQGGWGETVPVTKLELGDTGANVIKLRNRLVAMGYLKPTA- 230 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 S +D + AV+ FQ+ HGL+P G+ T+ +N PV R++ + V L R + L E+ Sbjct: 231 -SPIYDDELLGAVQAFQIAHGLEPDGVAGKGTITEVNRPVSDRLKAVYVALERERWLPEE 289 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIP 247 + G R++LVN S + V++G+V + ++G+ DR++P + ++ NP W +P Sbjct: 290 R-GERHILVNQADFSAKIVDDGQVTFETRAVIGKNTHDRRSPEFSDVMEHMVINPSWYVP 348 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKI 305 RSII K+ + LR +P + +I + D +G++V VD+N NF F RQ P K Sbjct: 349 RSIITKEYLPKLRANPNAV--GHIQITDRQGRQVNRGAVDFNQFTARNFPFSMRQPPSKS 406 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 NA+ K F ++ N Y+HDTP+ LF+ VR + GC+R+ + LL + Sbjct: 407 NALGLVKFMFPNKYNIYLHDTPQKSLFSREVRAFSHGCIRLAQPFEFAYALLAKQEENPK 466 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 V+ T K T VKL +VPVH +Y +A+ +Q+R D+Y D Sbjct: 467 AFFHRVLNTGKETTVKLDKKVPVHLIYRTAYIGPKGEVQYRRDVYDRD 514 >gi|189347548|ref|YP_001944077.1| Peptidoglycan-binding domain 1 protein [Chlorobium limicola DSM 245] gi|189341695|gb|ACD91098.1| Peptidoglycan-binding domain 1 protein [Chlorobium limicola DSM 245] Length = 560 Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 118/347 (34%), Positives = 189/347 (54%), Gaps = 14/347 (4%) Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDL-----DPSKG 129 A+ +K +A Y+ I GGW ++P G V LR+RL SGDL D SK Sbjct: 200 AELKKGLARYRVIARAGGWQKVPEGDSFREGVRDSRVPLLRKRLQQSGDLPGGVTDSSK- 258 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A + +AVK FQ R+GL G+ ++T+ +N+ R+ Q+++NL R + + Sbjct: 259 ---VYTAAMANAVKRFQKRNGLSVDGVAGTATIGEINISAAERVDQIRLNLERYRWFVND 315 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 + YVLVNI +L+ +ENG+ + VIVG+ R+TP+ + + I+FNP WVIP + Sbjct: 316 -LEPTYVLVNIAGFTLQYIENGRYRWGTRVIVGQPYRETPVFKADMQYIVFNPQWVIPPT 374 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINA 307 I+ +D + +R YL + +ID +G+ V V+W+ NF +R Q G A Sbjct: 375 ILAEDALPAIRNSRSYLDRKKLRVIDSRGRVVDPASVNWSGYSAANFPYRLQQTAGDHGA 434 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K +++ Y+HDTP LF R +SGC+RV N +DL +L+D+ W++ Sbjct: 435 LGRIKFMMPNKHVIYLHDTPTKNLFEKSERTFSSGCIRVENPLDLAQLVLQDSVKWNKTS 494 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 I+ + T KT+ V L +PV +Y++A + + IQFR D+Y D+ Sbjct: 495 IDSTIGTGKTSTVNLPKRIPVFLLYLTAIAEGEE-IQFRRDVYNRDD 540 >gi|145298228|ref|YP_001141069.1| hypothetical protein ASA_1213 [Aeromonas salmonicida subsp. salmonicida A449] gi|142851000|gb|ABO89321.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 494 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 123/327 (37%), Positives = 163/327 (49%), Gaps = 11/327 (3%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L + L G +S + ++R L GD P +D + A+K FQ RHGL Sbjct: 167 WPTLTMPTLRAGEASPELGQIRTILNELGDGAPRHD-DATYDVDTQQAIKQFQRRHGLTA 225 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ T +N +R L NL R + L++ G RYVLVNIP L VE+G Sbjct: 226 DGIIGRQTRTWLNTGPQVRASLLLRNLWR-RDLVDHLSGARYVLVNIPDYRLSVVESGNE 284 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 S VIVG+ R TPIL S I I+ NP W +PRSI+ KD++ L +DP YL + Sbjct: 285 VFTSRVIVGKEQRATPILASEIRSIVLNPPWHVPRSILSKDILPKLGRDPAYLNREQFEV 344 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 ID +G V E W F + RQ PG NA+ K + + Y+H TP L Sbjct: 345 IDGEGNPVQFTEEGWYQALAAGFPYRLRQKPGDHNALGRYKFYLPNNDAIYLHSTPRKAL 404 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK---LATEVPV 388 F R +SGC+RV + DL LL D SRY ++V K T K L T +PV Sbjct: 405 FEQGARAFSSGCIRVEHADDLAELLLAD----SRYQPDKVASILKNTQTKWLPLTTPIPV 460 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDNV 415 VY S+W ++ Q R+DIYG D V Sbjct: 461 FTVYWSSWIDEEGRQQLRNDIYGFDRV 487 >gi|294140649|ref|YP_003556627.1| putative peptidoglycan binding domain-containing protein [Shewanella violacea DSS12] gi|293327118|dbj|BAJ01849.1| putative peptidoglycan binding domain protein [Shewanella violacea DSS12] Length = 475 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 119/348 (34%), Positives = 184/348 (52%), Gaps = 13/348 (3%) Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSK 128 ISK+ + + K I + + R W EL L LG+S V + RL + GDL Sbjct: 119 ISKDYLTTSNK-IRYLLWLEQRDDWSELASNTWLKLGDSHSLVPEISSRLKVLGDLRQYD 177 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 ++ FDA V + VK FQ+RHGL G++ TL +N+ R L +N + L Sbjct: 178 PINTLFDANVNNGVKRFQLRHGLTLDGIIGPETLSWINMKPVKRAELLAINFINKTGYLA 237 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + R++++NIPA LE ++NG+V L+S VIVG+ RQTP L SRI+ ++ NP W +PR Sbjct: 238 -SVEPRFLIINIPAFELELIDNGQVALQSRVIVGKPYRQTPQLSSRISNLVINPSWRVPR 296 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKIN 306 S++ +D++ +R+D Y++ N + D G+ V +W +F +R Q PG+ N Sbjct: 297 SLLTRDLLPKVREDGGYIQARNFDVFDNNGEIVSKTSQEWQDLAHGHFPYRLVQIPGEGN 356 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTPT 362 + K F + ++ Y+HDT + LF R +SGC+R+ N+ L W L++D T Sbjct: 357 TLGRYKFYFENEHSVYLHDTVDKELFEESNRALSSGCIRIENVEGLANWMASNLVRDKQT 416 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 W E KT L +P++ VY +AW + QFR+DIY Sbjct: 417 WVDMQPER----HKTQWFSLEQSLPIYLVYWTAWVDQWGNAQFRNDIY 460 >gi|127512756|ref|YP_001093953.1| peptidoglycan binding domain-containing protein [Shewanella loihica PV-4] gi|126638051|gb|ABO23694.1| Peptidoglycan-binding domain 1 protein [Shewanella loihica PV-4] Length = 458 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 110/323 (34%), Positives = 168/323 (52%), Gaps = 14/323 (4%) Query: 97 LPIRP---LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 LP+ P L G+S + +R RL GD + FD +++A+ FQ RHGL P Sbjct: 127 LPLEPQGWLKPGDSHRIIPEIRVRLQALGDYPQGDTSGLYFDETLKAAMIKFQTRHGLKP 186 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 ++ +TL +N R + L VN +R + L +G RY+L+NIPA + V++ +V Sbjct: 187 DAIIGPATLSWLNRTPRERAQLLAVNFIRRAEYLAD-IGERYLLINIPAYEMWLVDDNQV 245 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 LRS VIVG+ RQTPI+ I ++ NP W +PR ++ D++ +R+D Y+ N + Sbjct: 246 ALRSKVIVGKPYRQTPIISGEIKNLVLNPSWRVPRRLLTHDLLPKVREDGSYISSRNFEV 305 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 D +G+ V + +W F +R Q PG N + K F + + Y+HDT + L Sbjct: 306 FDYQGERVIKSDDEWRDIAKGKFPYRLVQKPGVGNTLGRYKFFFPNEYSVYLHDTSDKAL 365 Query: 332 FNNVVRFETSGCVRVRNIIDLDVW----LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVP 387 F R +SGC+R+ + L W L++D TW R IE KT +P Sbjct: 366 FQRSDRALSSGCIRIEKVEQLANWMASHLVRDKQTWVRMQIER----DKTQWFAFDAGLP 421 Query: 388 VHFVYISAWSPKDSIIQFRDDIY 410 +H VY ++W D++ QFRDDIY Sbjct: 422 IHLVYWTSWLDDDNVAQFRDDIY 444 >gi|118588095|ref|ZP_01545505.1| hypothetical protein SIAM614_10978 [Stappia aggregata IAM 12614] gi|118439717|gb|EAV46348.1| hypothetical protein SIAM614_10978 [Stappia aggregata IAM 12614] Length = 535 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 189/370 (51%), Gaps = 12/370 (3%) Query: 52 FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVS 110 F+N VD G + + A+ ++ +A Y++ + GG+ ++P L G S Sbjct: 159 FENAEQAVDFGAFLESLAPQTDNYARLKRRLAQYREKAAAGGFAQVPEGEVLKPGMSDPR 218 Query: 111 VQRLRERLI---ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + LR RL I G D + + +D + AVKLFQ HGL+ G++ T+ +N+ Sbjct: 219 LTVLRTRLAEEDIPGAADHTGDI---YDGALVEAVKLFQEYHGLETDGVIGKDTIAQLNI 275 Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 P+ ++ Q+++N+ R ++ + G YV VN+ +L+ V +GK + V+VG+ Sbjct: 276 PIQEKLIQMELNMER-RRWMPDDPGQFYVFVNLADQNLKVVRDGKTIHTARVVVGKPYHA 334 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 TP+ R+ + NPYW +P SI K+ + L+Q+P L +I + E G EV +V Sbjct: 335 TPVFSDRLEYVEINPYWNVPYSIATKEYLPKLKQNPTALNGKSIRVFQE-GNEVAPTQVA 393 Query: 288 WNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 WNS NF F RQDPG NA+ K F +R N Y+HDTP LF R + GC+R Sbjct: 394 WNSYSGGNFPFRLRQDPGADNALGRIKFMFPNRFNIYIHDTPSKSLFARAERAFSHGCIR 453 Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 V + L LL D+ + H E + + T VK E+ VH Y++AW KD F Sbjct: 454 VSDPFALADVLLVDSDA-TPGHWEAIRDGGERTVVKPKVEIDVHLTYLTAWMNKDGSTHF 512 Query: 406 RDDIYGLDNV 415 R DIY D V Sbjct: 513 RKDIYNRDKV 522 >gi|152991962|ref|YP_001357683.1| hypothetical protein SUN_0366 [Sulfurovum sp. NBC37-1] gi|151423823|dbj|BAF71326.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 712 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 116/348 (33%), Positives = 188/348 (54%), Gaps = 10/348 (2%) Query: 80 KAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAY 137 +A+ Y++I GGW +LP + L G SS V LRERL I GD + S + Sbjct: 359 QALKRYKEIAENGGWKKLPEFKNLKPGMSSSVVPALRERLAIEGDYVCDSNETGNRYRGC 418 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY-V 196 + AVK FQ RHGL+ +G + T +A+NV + ++++L++NL RIK + ++ RY + Sbjct: 419 LVDAVKKFQARHGLEAAGFIGKMTRKALNVSAEEKVKKLKLNLDRIKWI--KRDNERYHI 476 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 VNIP+ + ++ ++ VI GR +TPI + R+ I+ NPYW IP SII+ + + Sbjct: 477 YVNIPSFHMYMYDDKEMIRTMRVITGRKGHETPIFYGRVRTIVLNPYWRIPPSIIRHETI 536 Query: 257 ALLRQDPQYLKDNNIHM---IDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAST 311 L++DP Y NI + E +V +V+W+ + P + F Q PG+ NA+ Sbjct: 537 PKLQKDPGYTNKKNIEIHTGYSEHSPKVNPYKVNWHKYGRKLPPYRFMQSPGEKNALGKV 596 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F ++ + YMHDT + LF R + GCVR++ +L + P +E+ Sbjct: 597 KYLFPNKYSVYMHDTNQRYLFVKDYRALSHGCVRLQKPFELLETFAEIEPKIDYERSKEI 656 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGI 419 + K TP +L+ +PV VY++A K+ + F DD+YG D + + + Sbjct: 657 LDENKKTPYRLSKSIPVDIVYLTALVSKEGTVMFYDDVYGYDRMQMAM 704 >gi|212635582|ref|YP_002312107.1| hypothetical protein swp_2794 [Shewanella piezotolerans WP3] gi|212557066|gb|ACJ29520.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 464 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 112/318 (35%), Positives = 174/318 (54%), Gaps = 14/318 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 IRP G S S+ + +RL++ GD S + + D + + V+ FQ RHGL+P G++ Sbjct: 136 IRP---GMSHKSLLAIADRLMLLGDGVASAQSAESLDDRLVNGVRRFQRRHGLNPDGIIG 192 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 TL+ +NV R R L + ++ + + Q+ +++++NIPA +E + GKV L S Sbjct: 193 PETLKWINVDPMERARILAKSFVQKAEFMSQR-AEQFLVINIPAYEMELISQGKVELESR 251 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 VIVG+ RQTP+L S I+ ++ NP W +P+ I+ D++ +R D Y++ + D +G Sbjct: 252 VIVGKPYRQTPLLSSAISNVVINPSWRVPKKILFNDLLPQVRIDGNYIEQREFDVFDREG 311 Query: 279 KEVFVEEVDWN--SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 +V W + P F F Q PG N + K F + + Y+HDT +P LFN Sbjct: 312 NQVVRSAQQWRDLAAGPFPFRFVQRPGVNNTLGRYKFYFPNDYSVYLHDTSDPKLFNKSY 371 Query: 337 RFETSGCVRVRNIIDLDVW----LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 R +SGC+R+ N+ L W L+KD TW HI+ KT L + + VH VY Sbjct: 372 RALSSGCIRIENVEGLANWMAANLVKDKQTWVDRHIDR----NKTQWFALNSTLNVHLVY 427 Query: 393 ISAWSPKDSIIQFRDDIY 410 +AW KD++ QFR+DIY Sbjct: 428 WTAWIDKDNLAQFRNDIY 445 >gi|218680582|ref|ZP_03528479.1| Peptidoglycan-binding domain 1 protein [Rhizobium etli CIAT 894] Length = 150 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 84/130 (64%), Positives = 103/130 (79%), Gaps = 1/130 (0%) Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 E +DWN E PN +FRQDPGK NAMASTKI FY++N YMHDTP+ LFN ++RFE+SGC Sbjct: 4 ETIDWNG-EAPNLMFRQDPGKTNAMASTKINFYNKNGEYMHDTPQQGLFNKLMRFESSGC 62 Query: 344 VRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSII 403 VRV+N+ DL WLL++TP W+R +E+V+ T TPVKLATEVPV+FVYISAW D I+ Sbjct: 63 VRVQNVRDLSNWLLRETPGWNRQQMEQVIATGVNTPVKLATEVPVYFVYISAWGMPDGIV 122 Query: 404 QFRDDIYGLD 413 QFRDDIY +D Sbjct: 123 QFRDDIYQMD 132 >gi|152993980|ref|YP_001359701.1| hypothetical protein SUN_2408 [Sulfurovum sp. NBC37-1] gi|151425841|dbj|BAF73344.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 558 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 185/346 (53%), Gaps = 12/346 (3%) Query: 85 YQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS--KGLSVAFDAYVESA 141 Y I GGWP + I+ L G+ + +V LRERL+I+GD P S +D ++ A Sbjct: 212 YIAIKENGGWPTVNIKGVLRPGHRNPAVPDLRERLLITGDYIPCDESDESDLYDNCLKKA 271 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 V FQ R+GL G++ +TL+A+N VD RI +++NL RIK L ++ R++++NIP Sbjct: 272 VIRFQKRNGLSAKGVIGKNTLKALNQTVDERITIIKINLDRIK-WLHERPDNRHIIINIP 330 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 L NGK+ + VIVG+ TPI +R+ ++ NPYW +P+SIIQK+M+ L + Sbjct: 331 DYRLYYEVNGKLKMTMKVIVGKRKNPTPIFSNRVKSVVLNPYWNVPKSIIQKEMIPKLLR 390 Query: 262 DPQYLKDNNIHMIDEKGKE---VFVEEVDWN----SPEPPNFIFRQDPGKINAMASTKIE 314 +P + I + GK+ V V+W S P + F Q PG NA+ K Sbjct: 391 NPHAMAGQGIDIYTGWGKDAKKVSGGSVNWAQYRYSKTVP-YRFAQRPGNRNALGRIKFL 449 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 F ++ + YMHDTP LF R + GC+R+ + + P+ +++K+ Sbjct: 450 FPNQFHVYMHDTPTKYLFKRDKRSYSHGCIRLEKPKLMMETIASFNPSLELDKAYKILKS 509 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 +K T L +P+ VY++AW D +QFRDD+Y D + + + Sbjct: 510 KKNTYFSLENTIPIDVVYLTAWVDYDGKLQFRDDVYKYDELMIASV 555 >gi|99081059|ref|YP_613213.1| peptidoglycan binding domain-containing protein [Ruegeria sp. TM1040] gi|99037339|gb|ABF63951.1| Peptidoglycan-binding domain 1 [Ruegeria sp. TM1040] Length = 540 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 126/396 (31%), Positives = 204/396 (51%), Gaps = 17/396 (4%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLA--RVDMGIDSDIPIISKETIAQTEKAI 82 L++ P+ +DE I H + RF +A R + +P S+ EK Sbjct: 136 GLIDTPVR---IDEGIVREKHKVDATRFLEGIATDRPAAFLQDLVPTSSQYRALLREKMR 192 Query: 83 AFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 + +L GGW +P+R + G++ SV LR RL+ G L P+ S +D VE A Sbjct: 193 --LEALLQAGGWGATVPVRKIEPGDTGQSVLALRNRLVSMGYLAPTATRS--YDLDVEDA 248 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 V+ FQ HGL+ G+ TL+ +N PV RI+ + V + R ++ L + GLR++LVN+ Sbjct: 249 VRRFQSEHGLEVDGVAGEGTLKELNRPVSDRIKSVLVAMER-ERWLTPERGLRHILVNLT 307 Query: 202 AASLEAVENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 S + ++ G++ + ++G + DR+TP ++ ++ NP W +PRSII K+ + L Sbjct: 308 DFSAKIMDEGEISFETRSVIGSTKSDRRTPEFSDEMDHMVINPSWYVPRSIITKEYLPKL 367 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYS 317 + +P + I + D +G+ V VD++ +F F RQ P NA+ K F + Sbjct: 368 KNNPN--AHSYIEITDNRGRVVNRNNVDFSQFTARSFPFAMRQPPSSRNALGLVKFMFPN 425 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 + N Y+HDTP+ LF VR + GCVR+ + LL + + V+ + K Sbjct: 426 KYNIYLHDTPQKHLFGREVRAFSHGCVRLHQPFEFAYELLTPQTENPKDYFHRVLNSGKE 485 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 T V L T+VPVH +Y +A+ +D +FR D+YG D Sbjct: 486 TKVPLETKVPVHLIYRTAFVSQDGRAEFRRDVYGRD 521 >gi|83942461|ref|ZP_00954922.1| peptidoglycan binding protein, putative [Sulfitobacter sp. EE-36] gi|83846554|gb|EAP84430.1| peptidoglycan binding protein, putative [Sulfitobacter sp. EE-36] Length = 528 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 113/334 (33%), Positives = 182/334 (54%), Gaps = 10/334 (2%) Query: 86 QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + +L++GGW P +P L G V LR RL+ G L S ++ +DA ++ AV+ Sbjct: 182 EHLLTQGGWGPAVPASSLKPGAQGTQVVALRNRLMSMGYLKRSNVMT--YDATLQEAVRS 239 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL+ G+ S T+ +N V+ R++ + V + R ++ L ++ G R+VLVNIPA + Sbjct: 240 FQKDHGLNEDGVAGSGTMAEINKSVETRLQSVIVAMER-ERWLNKERGARHVLVNIPAFT 298 Query: 205 LEAVENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 V+NG+V + +VG + DR TP + I+ NP W +PRSI+ K+ + ++++ Sbjct: 299 ASVVDNGQVTFETRSVVGANQSDRLTPEFSDVMEYIVINPTWTVPRSIVTKEYLPSMQRN 358 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 P +I +ID +G+ + V+++ F + RQ PG+ NA+ K F ++ N Sbjct: 359 PN--AAGHIDLIDNRGRIISRGSVNFSRYTARTFPYGMRQKPGRTNALGLVKFIFPNKYN 416 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP LF+ VR + GCVR+ + D LL + + + T + T V Sbjct: 417 IYLHDTPSKSLFDRDVRAFSHGCVRLADPFDFAYTLLAPQAADPVAYFKRQLATGRETFV 476 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 L TEVPVH +Y +A++ Q+R DIYG D Sbjct: 477 HLDTEVPVHIIYRTAFTTPRGHTQYRADIYGRDG 510 >gi|83953680|ref|ZP_00962401.1| peptidoglycan binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83841625|gb|EAP80794.1| peptidoglycan binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 528 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 113/334 (33%), Positives = 182/334 (54%), Gaps = 10/334 (2%) Query: 86 QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + +L++GGW P +P L G V LR RL+ G L S ++ +DA ++ AV+ Sbjct: 182 EHLLTQGGWGPAVPASSLKPGAQGTQVVALRNRLMSMGYLKRSNVMT--YDATLQEAVRS 239 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL+ G+ S T+ +N V+ R++ + V + R ++ L ++ G R+VLVNIPA + Sbjct: 240 FQKDHGLNEDGVAGSGTMAEINKSVETRLQSVIVAMER-ERWLNKERGARHVLVNIPAFT 298 Query: 205 LEAVENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 V+NG+V + +VG + DR TP + I+ NP W +PRSI+ K+ + ++++ Sbjct: 299 ASVVDNGQVTFETRSVVGANQSDRLTPEFSDVMEYIVINPTWTVPRSIVTKEYLPSMQRN 358 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 P +I +ID +G+ + V+++ F + RQ PG+ NA+ K F ++ N Sbjct: 359 PN--AAGHIDLIDNRGRIISRGSVNFSRYTARTFPYGMRQKPGQTNALGLVKFIFPNKYN 416 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP LF+ VR + GCVR+ + D LL + + + T + T V Sbjct: 417 IYLHDTPSKSLFDRDVRAFSHGCVRLADPFDFAYTLLAPQAADPVAYFKRQLATGRETFV 476 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 L TEVPVH +Y +A++ Q+R DIYG D Sbjct: 477 HLDTEVPVHIIYRTAFTTPRGHTQYRADIYGRDG 510 >gi|259419164|ref|ZP_05743081.1| peptidoglycan-binding domain 1 [Silicibacter sp. TrichCH4B] gi|259345386|gb|EEW57240.1| peptidoglycan-binding domain 1 [Silicibacter sp. TrichCH4B] Length = 540 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 110/333 (33%), Positives = 183/333 (54%), Gaps = 10/333 (3%) Query: 86 QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + +++ GGW +P+R + G+S +V LR+RL+ G L P+ + +D +E AV+ Sbjct: 194 ETLMNAGGWGATVPVRKMEPGDSGPNVIALRDRLVSMGYLQPTA--TRTYDLSLEDAVRR 251 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL+ G+ TL +N PV RI+ + V + R ++ L + G R++LVN+ S Sbjct: 252 FQGEHGLEVDGVAGEGTLTEINRPVTDRIKSVLVAMER-ERWLTPERGPRHILVNLTDFS 310 Query: 205 LEAVENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + V++G++ + ++G R DR+TP ++ ++ NP W +PRSI+ K+ + L+ + Sbjct: 311 AKIVDDGEISFETRSVIGSNRSDRRTPEFSDEMDHMVINPSWYVPRSIVTKEYLPKLKNN 370 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 P + I + D +G+ V VD++ +F F RQ P NA+ K F ++ N Sbjct: 371 PN--AHSYIEITDNRGRVVNRNSVDFSQFTARSFPFAMRQPPSSRNALGLVKFMFPNKYN 428 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP+ LF VR + GC+R++ D LL + + V+ + K T V Sbjct: 429 IYLHDTPQKSLFGREVRAYSHGCIRLQKPFDFAYALLAPQTENPKDYFHRVLNSGKETKV 488 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L T+VPVH +Y +A+ +D +FR DIYG D Sbjct: 489 SLETKVPVHLIYRTAFVSQDGRAEFRRDIYGRD 521 >gi|260433724|ref|ZP_05787695.1| peptidoglycan-binding domain 1 [Silicibacter lacuscaerulensis ITI-1157] gi|260417552|gb|EEX10811.1| peptidoglycan-binding domain 1 [Silicibacter lacuscaerulensis ITI-1157] Length = 535 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 108/333 (32%), Positives = 177/333 (53%), Gaps = 10/333 (3%) Query: 86 QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 Q+++ GGW P +P G S V +LR+RL+ G L P+ S +D+ +E+AV+ Sbjct: 189 QELMRHGGWGPTVPKGKYEPGASGAGVLKLRDRLVAMGFLKPTA--SPEYDSAMEAAVRA 246 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL+P G+ T+ +N R++ + V + R ++ L G R+VLVN S Sbjct: 247 FQRAHGLEPDGVAGEGTIAEINRSPTDRLKAVMVAMER-ERWLPADRGQRHVLVNQADFS 305 Query: 205 LEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + V++G V + ++G+ DR++P + ++ NP W +PRSII K+ + LR + Sbjct: 306 AKIVDDGNVTFETRAVIGKNTHDRRSPEFSDEMEHMVINPSWYVPRSIITKEYLPKLRAN 365 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 P ++ ++ + D +G++V VD+N +F F RQ PG+ NA+ K F ++ N Sbjct: 366 PNAVR--HLEITDSRGRQVNRAAVDFNQFSARSFPFAMRQPPGQSNALGLVKFMFPNKYN 423 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP+ LF VR + GC+R+ + LL + ++ T K T V Sbjct: 424 IYLHDTPQKSLFAREVRAFSHGCIRLAQPFEFAYALLAPQEEDPKAFFHRILNTGKETKV 483 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L VPVH +Y +A+ +Q+R D+YG D Sbjct: 484 DLEKPVPVHLIYRTAYIGPKGDVQYRRDVYGRD 516 >gi|237807403|ref|YP_002891843.1| ErfK/YbiS/YcfS/YnhG family protein [Tolumonas auensis DSM 9187] gi|237499664|gb|ACQ92257.1| ErfK/YbiS/YcfS/YnhG family protein [Tolumonas auensis DSM 9187] Length = 514 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 128/388 (32%), Positives = 192/388 (49%), Gaps = 22/388 (5%) Query: 40 INESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS------RGG 93 N S + +D L R D DS I + QTE + + +LS + Sbjct: 119 FNPSTSATGRHAYDELLQRTDP--DSAI----NKLRPQTENYLTNRRVLLSLLSESRKAP 172 Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLD-----PSKGLSVAFDAYVESAVKLFQMR 148 WP LP + G+S ++ +R L+ SGDL P + +D AV+ FQ R Sbjct: 173 WPALPALKVRPGDSHDALPVIRNILLRSGDLQANTLTPQQMQLTTYDVQTVQAVEHFQQR 232 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGLD G++ TL + +P +R L +++R L + RYVLVNIP L + Sbjct: 233 HGLDADGVIGRRTLNWLRLPPQVRAVILARSILR-SDLPQNMSSRRYVLVNIPEFRLRVL 291 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 + + S VIVG++ RQTPIL S I+ I+ NP W +P SI+QKD++ L +D +L Sbjct: 292 DKKQEIFSSRVIVGQIKRQTPILSSEISSIVVNPAWHVPASILQKDLVPKLAKDKHFLDK 351 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDT 326 ++D +G V + W+ E NF + RQ PG NA+ K + + Y+H T Sbjct: 352 GQFELVDSQGITVDPAAMVWDGTE-ENFPYQLRQKPGDHNALGRYKFYLPNNDAIYLHST 410 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P F +R +SGCVRV D LLKD+ W+ +++++K T + + V Sbjct: 411 SSPGYFKRDLRALSSGCVRVEEADDFARLLLKDS-KWNINKLDQMLKEDTTKWLSMTDPV 469 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLDN 414 PV+ VY +W K +QFRDDIY ++ Sbjct: 470 PVYTVYWRSWVDKQGQLQFRDDIYQFED 497 >gi|83647078|ref|YP_435513.1| hypothetical protein HCH_04383 [Hahella chejuensis KCTC 2396] gi|83635121|gb|ABC31088.1| uncharacterized protein conserved in bacteria [Hahella chejuensis KCTC 2396] Length = 560 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 111/336 (33%), Positives = 174/336 (51%), Gaps = 14/336 (4%) Query: 90 SRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDL-----DPSKGL-SVAFDAYVESAV 142 ++GGWP + P L G S V LR RLI SGD+ D S+G FD + AV Sbjct: 205 AQGGWPMVSYGPTLRPGQSDSRVIELRRRLIASGDMERPVIDTSEGDDETLFDEGLVKAV 264 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 + FQ RHGL P +V TL +N P+ RI Q++ NL R ++ +G RYV+VNI Sbjct: 265 RFFQERHGLKPDAIVGKETLAMLNTPISERIEQVRSNLER-RRWTPTNLGDRYVVVNIAD 323 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 L+ V++G+ L V+VG+ R+TP + ++ NP W +P I ++DM+ +D Sbjct: 324 YRLDLVDHGRTELSMRVVVGKPYRRTPAFSGLMTYLVVNPLWEVPTQIAEEDMLERFIED 383 Query: 263 PQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYS 317 P+++ + G+E E ++W + F +R Q G +NA+ K F + Sbjct: 384 PEFINKMGFRVYKGWGREEAALDPETINWEEVKGGKFPYRLQQAAGPMNALGRIKFMFPN 443 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 N Y+HDTP LF R +SGC+R+ ++L L+ + +++++ + + Sbjct: 444 EFNVYLHDTPSRSLFYKSQRAFSSGCIRLERPLELAAALIGSKRK-TGIELDKILASGEP 502 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 T ++L VPVH Y +AW + QFR D+YG D Sbjct: 503 TTLRLPRPVPVHLQYWTAWMDDSGVAQFRKDVYGRD 538 >gi|209965708|ref|YP_002298623.1| peptidoglycan binding domain protein, putative [Rhodospirillum centenum SW] gi|209959174|gb|ACI99810.1| peptidoglycan binding domain protein, putative [Rhodospirillum centenum SW] Length = 596 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 111/343 (32%), Positives = 174/343 (50%), Gaps = 11/343 (3%) Query: 81 AIAFYQDILSRGGWPELPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA---FD 135 A+A Y+ + + GGW +P L G S V LR RL +G+L P+ +D Sbjct: 214 ALAAYRTLAAAGGWLAVPTGGETLKPGQSDPRVPALRARLAATGELSPAAPAPADPQFYD 273 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 +E+AV+LFQ R+GL+P G V ++ A+NV R+ Q+++N+ R + L +G Y Sbjct: 274 PALEAAVRLFQSRNGLEPDGAVGRQSVAALNVTAQQRVTQIEINMERWR-WLPADLGPSY 332 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++VN+ A L E + + ++VG +TP+ + + NPYW +P SI + ++ Sbjct: 333 LIVNLAAFELAVFEGDRPVHTARIVVGAPFTRTPVFSESMTYLELNPYWNVPPSIARDEI 392 Query: 256 MALLRQDPQYLKDNNIHMID---EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 R+DP YL ++ E V VDW + RQ PG N++ K Sbjct: 393 FPKARKDPGYLARRGYELLSDWSETAVPVDPATVDWRHGNLNRYKVRQKPGDTNSLGRIK 452 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT--WSRYHIEE 370 F +R N Y+HDTP LF R + GC+RV N +DL +L+ T T W R ++ Sbjct: 453 FMFPNRFNVYLHDTPSKRLFERANRTFSHGCMRVENPLDLAETVLRLTGTTGWDRARLDA 512 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + + V+L +PVH Y++A+ +D + FR DIYG D Sbjct: 513 AIAGDQRQVVRLRRPLPVHVTYVTAFVEEDGTVAFRPDIYGRD 555 >gi|152993866|ref|YP_001359587.1| hypothetical protein SUN_2290 [Sulfurovum sp. NBC37-1] gi|151425727|dbj|BAF73230.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 566 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 106/320 (33%), Positives = 179/320 (55%), Gaps = 8/320 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL LG+ S V+ +++RL ISGD + + FD +E AVK +Q R+ L +G VD + Sbjct: 220 PLKLGDWSPRVKEVKKRLQISGDYPKNAPVDWKFDRRLEQAVKTYQKRYLLKITGQVDKT 279 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T+ +N P I+ + VNL + K L + Y+ VN+P +L NG++ ++ ++ Sbjct: 280 TMYYLNQPASKNIKAIIVNLDKTK-LYPKHFENEYIAVNVPDFNLRYYRNGEMIFKTGIV 338 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VGR+DR TPI +I ++ NP W IP ++I++D++ +LR++P YL++NNIH+ KE Sbjct: 339 VGRIDRPTPIFSDKIEYMVINPTWTIPDNLIKRDLIHVLRENPAYLEENNIHVF-SGNKE 397 Query: 281 VFVEEVDWNSPEPPN----FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + V + + E + + F Q PG NA+ K F ++ + Y+HDT L Sbjct: 398 ITVTQEMLDPYEHSDKKVPYRFVQYPGDSNALGRIKFMFPNKYSVYLHDTDNKSLLTRRY 457 Query: 337 RFETSGCVRVRNIIDL-DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 + +SGC+RV DL D+ L ++R I+ ++ T K ++L +PVH +Y + Sbjct: 458 KIYSSGCMRVDKPFDLMDILLKHAKGRYTREDIDAIIATDKPKTIRLKKAIPVHILYFTV 517 Query: 396 WSPKDSIIQFRDDIYGLDNV 415 + +D + F++DIY D + Sbjct: 518 FE-EDGLAYFKNDIYLYDKI 536 >gi|119471875|ref|ZP_01614183.1| hypothetical protein ATW7_04554 [Alteromonadales bacterium TW-7] gi|119445248|gb|EAW26538.1| hypothetical protein ATW7_04554 [Alteromonadales bacterium TW-7] Length = 453 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 120/355 (33%), Positives = 182/355 (51%), Gaps = 16/355 (4%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDP--- 126 S + I +TEKAI +YQ+I++RGG+ LP L LG++S +V L RL DL Sbjct: 83 SAQLIKRTEKAINWYQEIVNRGGFISLPASELLELGSNSKAVSLLAMRLFQEQDLRTNVC 142 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 SK + FD ++E AVK FQ RHGL+ G V +T +N+ + ++ +L++N RI Sbjct: 143 SKAPCI-FDKHIERAVKQFQHRHGLNVDGRVGKNTFAKLNISAEQKLNKLKLNFYRITNF 201 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 +YV VNIP L V+ G V L++ VIVG+ +TP I + + NP W I Sbjct: 202 AGSS-DEQYVYVNIPEYQLRYVKVGDVKLQNNVIVGKPSWETPAFSDEIEKFVVNPEWRI 260 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEK---GKEVFVEEVDWNSPEPPNF--IFRQD 301 P SI +++ + +DP YL NNI + + V +DW+S +P F + Sbjct: 261 PISIATREIAPKVAEDPDYLVKNNIEIRKNSYIDSQTVNPNNIDWDSIKPYQFDHFLVKR 320 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 G+ N + K F + Y+HDTP F+ R + GC+R+ + L ++K Sbjct: 321 AGEKNPLGEVKYLFPNPEAIYVHDTPAKQRFSQTRRALSHGCIRIEDPFSLAQEIIKHQG 380 Query: 362 TWSRYHIEEVVKTR---KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 Y +E+V R T L +P+H VY +AW ++ ++ FRDDIY D Sbjct: 381 --EEYALEQVNDARSENSTQTFYLDEPLPIHLVYWTAWVDENKLVNFRDDIYKRD 433 >gi|332558206|ref|ZP_08412528.1| peptidoglycan binding domain-containing protein [Rhodobacter sphaeroides WS8N] gi|332275918|gb|EGJ21233.1| peptidoglycan binding domain-containing protein [Rhodobacter sphaeroides WS8N] Length = 536 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 110/347 (31%), Positives = 180/347 (51%), Gaps = 16/347 (4%) Query: 86 QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + ++ GGW +P L G + LR+RL+ G L + + ++DA V +AV+ Sbjct: 190 EATVAAGGWGAAVPAGKLKPGATGPGFLALRDRLMAMGYL--GRSTAASYDAEVAAAVRS 247 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL P G+ T+ A+NV + R++ + V L R ++ L G R++ VN+ S Sbjct: 248 FQTDHGLSPDGVAGEGTIAALNVAPEARLKSILVALER-ERWLSIDRGERHIWVNLADFS 306 Query: 205 LEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 ++NGKV + ++G+ D++TP + ++ NP W +PRSI K+ + LL+++ Sbjct: 307 TRLIDNGKVTFETRSVIGKDSPDQRTPEFSDEMEYMVINPSWHVPRSITTKEYLPLLQRN 366 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 P ++ +ID +G+EV V++N+ NF F RQ P NA+ K F ++ N Sbjct: 367 PN--AAGHLKLIDSRGREVSRGAVNFNAYNARNFPFSMRQPPSDGNALGLVKFMFPNQWN 424 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP LF+ VR + GC+R+ D LL + + + + + V Sbjct: 425 IYLHDTPSKSLFDREVRAFSHGCIRLGRPFDFAYALLAAQTEDPEGLFQSHLSSGRESVV 484 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV------HVGIIP 421 +L VPVH VY +AW+ + +RDDIYG D V G++P Sbjct: 485 RLEKPVPVHLVYFTAWAGPTGQMNYRDDIYGRDGVIFDALSEAGVVP 531 >gi|126666378|ref|ZP_01737357.1| hypothetical protein MELB17_12356 [Marinobacter sp. ELB17] gi|126629179|gb|EAZ99797.1| hypothetical protein MELB17_12356 [Marinobacter sp. ELB17] Length = 566 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 115/347 (33%), Positives = 182/347 (52%), Gaps = 20/347 (5%) Query: 81 AIAFYQDILSRGGWPELPIRPLHL--GNSSVSVQRLRERLIISGDLDPSKGLS------- 131 +A+Y++I GGW +LP RP L G+ V LR+RL + G L +S Sbjct: 184 GLAYYRNIQLEGGWQQLPQRPQSLRPGDVDADVPLLRQRLAMIGGLGLQNAMSAVQPEEQ 243 Query: 132 ----VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 + +D + AV+LFQ H L+ G+V T A NV VD RI Q++ NL R + LL Sbjct: 244 TATLLEYDEAMVGAVRLFQRHHLLEADGIVGQQTRNAFNVSVDERINQIRANLERARWLL 303 Query: 188 EQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + ++LV+I + NG++ RS ++VG+ R TP L S I + NP W + Sbjct: 304 HGEASA-FILVDIAGYRISYFRPNGEI-WRSRIVVGQPYRSTPSLRSEITHLTVNPTWTV 361 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P +I ++D + +R D YL N+ ++D +G+ + +++DW +P + + RQ PG +N Sbjct: 362 PPTIYREDSLPKIRDDIGYLYRQNMSVLDLRGQRLDPQQIDWWNPG--SIMLRQGPGPMN 419 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 A+ + F + + Y+HDTP LF R +SGC+RV+ I +L L DT T + Sbjct: 420 ALGQLVLRFPNNHLVYLHDTPAQALFGRQQRAFSSGCIRVQGITELAQLLFDDTDTAA-- 477 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 ++ ++ T T +KL +PV Y + +D + FR DIY D Sbjct: 478 DVKALIATGDTRNIKLRRTMPVILHYWTVHPGEDGELVFRPDIYQQD 524 >gi|146299527|ref|YP_001194118.1| peptidoglycan binding domain-containing protein [Flavobacterium johnsoniae UW101] gi|146153945|gb|ABQ04799.1| Peptidoglycan-binding domain 1 protein [Flavobacterium johnsoniae UW101] Length = 526 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 101/316 (31%), Positives = 177/316 (56%), Gaps = 4/316 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ + L +++ ++ ++++L+ D+ L+ +D AVK FQ RHGL G++ Sbjct: 207 VKKITLKDTNNALINIKKKLLFWKDMSGKDSLTDKYDEKTFEAVKKFQARHGLADDGVIG 266 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 T+ A+N + R +Q+ NL R + ++ Y ++NIP SL VEN L Sbjct: 267 IGTISALNYSKERRKQQIIANLERWR-WYPTELAENYFIINIPDYSLHVVENQDTTLVRN 325 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 ++VG R+TPI+ S + ++FNP W +P +I+++D++ ++++ YL NI + D G Sbjct: 326 IVVGTSSRKTPIITSVLKTVVFNPTWTVPPTILKEDVVPAMKRNRNYLAKKNITIYDTSG 385 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 K VE WN +P N+ + Q PG N++ KI F + ++ Y+HDT F R Sbjct: 386 K--VVEPSAWNENKPNNYRYVQSPGYNNSLGLMKILFPNHHSVYLHDTNHRNYFVRNNRS 443 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 +SGCVRV N ++L +L D+ +S+ I+ ++ ++KT K+ + ++ Y +AWS Sbjct: 444 LSSGCVRVENPLELAEHILNDSIRFSKVKIDTIIASKKTMSFKITKKYALYQWYWTAWSK 503 Query: 399 KDSIIQFRDDIYGLDN 414 K+ +I FR DIY LD+ Sbjct: 504 KNQLI-FRADIYNLDS 518 >gi|77463328|ref|YP_352832.1| hypothetical protein RSP_2774 [Rhodobacter sphaeroides 2.4.1] gi|126462184|ref|YP_001043298.1| peptidoglycan binding domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|77387746|gb|ABA78931.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1] gi|126103848|gb|ABN76526.1| Peptidoglycan-binding domain 1 protein [Rhodobacter sphaeroides ATCC 17029] Length = 546 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 110/347 (31%), Positives = 180/347 (51%), Gaps = 16/347 (4%) Query: 86 QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + ++ GGW +P L G + LR+RL+ G L + + ++DA V +AV+ Sbjct: 200 EATVAAGGWGAAVPAGKLKPGATGPGFLALRDRLMAMGYL--GRSTAASYDAEVAAAVRS 257 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL P G+ T+ A+NV + R++ + V L R ++ L G R++ VN+ S Sbjct: 258 FQTDHGLSPDGVAGEGTIAALNVAPEARLKSILVALER-ERWLSIDRGERHIWVNLADFS 316 Query: 205 LEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 ++NGKV + ++G+ D++TP + ++ NP W +PRSI K+ + LL+++ Sbjct: 317 TRLIDNGKVTFETRSVIGKDSPDQRTPEFSDEMEYMVINPSWHVPRSITTKEYLPLLQRN 376 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 P ++ +ID +G+EV V++N+ NF F RQ P NA+ K F ++ N Sbjct: 377 PN--AAGHLKLIDSRGREVSRGAVNFNAYNARNFPFSMRQPPSDGNALGLVKFMFPNQWN 434 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP LF+ VR + GC+R+ D LL + + + + + V Sbjct: 435 IYLHDTPSKSLFDREVRAFSHGCIRLGRPFDFAYALLAAQTDDPEGLFQSHLSSGRESVV 494 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV------HVGIIP 421 +L VPVH VY +AW+ + +RDDIYG D V G++P Sbjct: 495 RLEKPVPVHLVYFTAWAGPTGQMNYRDDIYGRDGVIFDALSEAGVVP 541 >gi|221639179|ref|YP_002525441.1| peptidoglycan-binding domain 1 protein [Rhodobacter sphaeroides KD131] gi|221159960|gb|ACM00940.1| Peptidoglycan-binding domain 1 protein precursor [Rhodobacter sphaeroides KD131] Length = 518 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 110/347 (31%), Positives = 180/347 (51%), Gaps = 16/347 (4%) Query: 86 QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + ++ GGW +P L G + LR+RL+ G L + + ++DA V +AV+ Sbjct: 172 EATVAAGGWGAAVPAGKLKPGATGPGFLALRDRLMAMGYL--GRSTAASYDAEVAAAVRS 229 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL P G+ T+ A+NV + R++ + V L R ++ L G R++ VN+ S Sbjct: 230 FQTDHGLSPDGVAGEGTIAALNVAPEARLKSILVALER-ERWLSIDRGERHIWVNLADFS 288 Query: 205 LEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 ++NGKV + ++G+ D++TP + ++ NP W +PRSI K+ + LL+++ Sbjct: 289 TRLIDNGKVTFETRSVIGKDSPDQRTPEFSDEMEYMVINPSWHVPRSITTKEYLPLLQRN 348 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 P ++ +ID +G+EV V++N+ NF F RQ P NA+ K F ++ N Sbjct: 349 PN--AAGHLKLIDSRGREVSRGAVNFNAYNARNFPFSMRQPPSDGNALGLVKFMFPNQWN 406 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP LF+ VR + GC+R+ D LL + + + + + V Sbjct: 407 IYLHDTPSKSLFDREVRAFSHGCIRLGRPFDFAYALLAAQTDDPEGLFQSHLSSGRESVV 466 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV------HVGIIP 421 +L VPVH VY +AW+ + +RDDIYG D V G++P Sbjct: 467 RLEKPVPVHLVYFTAWAGPTGQMNYRDDIYGRDGVIFDALSEAGVVP 513 >gi|51244920|ref|YP_064804.1| hypothetical protein DP1068 [Desulfotalea psychrophila LSv54] gi|50875957|emb|CAG35797.1| hypothetical protein DP1068 [Desulfotalea psychrophila LSv54] Length = 561 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 110/342 (32%), Positives = 181/342 (52%), Gaps = 11/342 (3%) Query: 79 EKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDL--DPSKGLSVAFD 135 + A+A+Y++ G WP++ + LH G+ + +R+RL +G P +D Sbjct: 209 KTALAYYRNFAKNGDWPKVAMGVNLHPGDREKRIISIRKRLQFAGPFLEAPRDSDLSQYD 268 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 +E AV FQ HGL G++ +T++A+N+ + +I +++N+MR + +G RY Sbjct: 269 LILEEAVLSFQQLHGLQTDGIIGRNTVDALNISIAEKIEIIRLNMMRWR-WQAHDLGKRY 327 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 +LVNI + +L+A + V L +IVG + +TP+ + I I FNP+W IP SI + +M Sbjct: 328 LLVNIASFNLKAFRDQDVVLDMPIIVGTEENETPVFSAWIKYIDFNPFWNIPTSIARNEM 387 Query: 256 MALLRQDPQYLKDNNIHMI---DEKGKEVFVEEVDWNSPEPPN---FIFRQDPGKINAMA 309 + LR++ YL D I + + E+ +DW + P + RQDPG +NA+ Sbjct: 388 LPALRKNNYYLIDQRISLFSNWQQSAVELDSTAIDWEAITPSEISAYKLRQDPGPLNALG 447 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD-TPTWSRYHI 368 K F + + YMHDTP LF+ R + GC+RV + + L ++LL++ T W I Sbjct: 448 RIKFIFPNSYSVYMHDTPGRHLFSLSKRSFSHGCIRVSDPLSLAIFLLENQTDGWDTEKI 507 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 +E+ + + + L V VH Y +AW K I F DIY Sbjct: 508 KEIYEQEERKVIILTLSVAVHITYGTAWVDKGGEIHFSRDIY 549 >gi|254487232|ref|ZP_05100437.1| peptidoglycan-binding domain 1 [Roseobacter sp. GAI101] gi|214044101|gb|EEB84739.1| peptidoglycan-binding domain 1 [Roseobacter sp. GAI101] Length = 516 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 113/333 (33%), Positives = 178/333 (53%), Gaps = 10/333 (3%) Query: 86 QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + +L+ GGW P + L G +V LR RLI G L + G+S +DA +E+AV+ Sbjct: 170 EKLLATGGWGPVVSASTLKPGAQGAAVVSLRNRLIRMGYLKRTNGIS--YDATMEAAVRE 227 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL+ G+ S T+ +N V+ R++ + V + R ++ L ++ G R+VLVNIPA + Sbjct: 228 FQKDHGLNTDGVAGSGTITELNKSVETRLKSVIVAMER-ERWLNKERGARHVLVNIPAFT 286 Query: 205 LEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 ++NG+V + +VG R TP + I+ NP W +PRSI+ K+ + ++ + Sbjct: 287 AAIIDNGRVTFETKSVVGATKDGRYTPEFSDTMEYIVINPTWNVPRSIVTKEYLPSMKNN 346 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 P +I +ID G+ V V+++S F F RQ PG+ NA+ K F ++ N Sbjct: 347 PN--AAGHIDLIDRSGRIVPRGAVNFSSYTEQTFPFSMRQRPGRSNALGLVKFIFPNKYN 404 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP LF +R + GCVR+ + D LL + + + T + T V Sbjct: 405 IYLHDTPSKSLFARDMRAFSHGCVRLADPFDFAYTLLAAQTSDPVGFFKSKLATGRETFV 464 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L E+PVH +Y +A++ Q+R DIYG D Sbjct: 465 HLDNELPVHLIYRTAFTTPRGHTQYRADIYGRD 497 >gi|91792858|ref|YP_562509.1| peptidoglycan binding domain-containing protein [Shewanella denitrificans OS217] gi|91714860|gb|ABE54786.1| Peptidoglycan-binding domain 1 [Shewanella denitrificans OS217] Length = 498 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 107/325 (32%), Positives = 173/325 (53%), Gaps = 15/325 (4%) Query: 94 WPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 WP + P L + S+ + RL + GD + V A +ES +K FQ RHGL Sbjct: 168 WPVIDPQGLLRRNDGHASIPAIAARLSLLGDFHGAHQGYVLTPA-LESGLKAFQRRHGLK 226 Query: 153 PSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 G++ TL +N +P++ R R L VN + + + ++ Y+LVNIPA + V+ G Sbjct: 227 DDGVIGPKTLSWLNQLPIE-RARLLAVNFVEQSRY-QAQLDDSYLLVNIPAFEMVLVDKG 284 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 ++ L S VIVG+ RQTPI+ I+ ++ NP W +PR ++++D++ +R+D +YL + Sbjct: 285 QIVLHSRVIVGKSYRQTPIMSGAISNLVINPTWTVPRRLLRQDVLPHVRKDGRYLAEKQF 344 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + + +G++ + +W S F ++ Q PG+ N++ K F + N Y+HDTP P Sbjct: 345 DVFNYQGQKQLLTAEEWQSLAYTRFPYKLVQRPGEHNSLGRYKFHFNNDKNIYLHDTPTP 404 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWL----LKDTPTWSRYHIEEVVKTRKTTPVKLATE 385 LF N R +SGC+R+ + +L W + D TW R + KT L Sbjct: 405 ELFANAERALSSGCIRIEKVAELANWFAVHRVNDKRTWRRLQSSK----HKTQWFSLTHS 460 Query: 386 VPVHFVYISAWSPKDSIIQFRDDIY 410 +PVH VY +AW + + Q+R DIY Sbjct: 461 LPVHLVYWTAWVDEHHLAQYRSDIY 485 >gi|117920334|ref|YP_869526.1| peptidoglycan binding domain-containing protein [Shewanella sp. ANA-3] gi|117612666|gb|ABK48120.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. ANA-3] Length = 558 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 104/297 (35%), Positives = 159/297 (53%), Gaps = 11/297 (3%) Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 S+ +D + A+K FQ +HGL G++ TL +N R + L N +R ++L + Sbjct: 260 SMPYDDELVRAIKNFQTQHGLQADGVIGKQTLYWLNQSPYARAKLLAKNTLR-QQLFTRT 318 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 + Y+++NIPA L+ VE GKV L S VIVG+ R TP+L S I+ ++ NP W +PR+I Sbjct: 319 LPASYLVINIPAFELQFVEAGKVILNSKVIVGKASRPTPLLSSHISSVVLNPQWRVPRTI 378 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAM 308 +++D+M +RQD YL+D + D G V +W +F +R Q PG NA+ Sbjct: 379 VRRDIMPHIRQDGHYLQDRGFDVYDYDGARVEHSPQEWQELASSHFPYRLVQRPGAKNAL 438 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTPTWS 364 K F + + Y+H T EP LF R +SGC+RV + +L W L+KDT W Sbjct: 439 GRYKFHFDNSFSVYLHGTSEPSLFKKTDRALSSGCIRVEKVEELARWFQTHLVKDTRLWD 498 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 + T ++ L+ +PV+ VY +AW IQ+R+DIY L+ +P Sbjct: 499 KL----TPNTTQSQWFALSDTMPVYTVYWTAWLDDAGQIQYRNDIYHLEVEFTQAVP 551 >gi|24373669|ref|NP_717712.1| hypothetical protein SO_2109 [Shewanella oneidensis MR-1] gi|24348019|gb|AAN55156.1|AE015652_5 conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 502 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 106/322 (32%), Positives = 175/322 (54%), Gaps = 21/322 (6%) Query: 105 GNSSVSVQRLRERLIISGDL------DPSKGL----SVAFDAYVESAVKLFQMRHGLDPS 154 G S + + RL+I G L +PS G+ + + + +A+KLFQ +HGL Sbjct: 168 GQQSPLISPIARRLLILGFLPNELRMEPSVGVEANNGMLYGDELVTAIKLFQQQHGLLAD 227 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G++ TL +N R + L N++R + + ++ RY+LVNIPA L+ +E+G+V Sbjct: 228 GVIGKQTLFWLNQSPRARAKLLARNVLR-QSIFTAQLPARYLLVNIPAFELKLIEDGQVA 286 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 LRS VIVG+ R TP+L S+I+ ++ NP W +PR+II++D++ +RQD YL + + Sbjct: 287 LRSKVIVGKASRPTPLLASQISSVVMNPEWRVPRTIIKRDILPHIRQDGHYLTEREFDVY 346 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 G++ +W + +F ++ Q PG NA+ K F + + Y+H T EP LF Sbjct: 347 AYDGQQAEHSADEWQALASSHFPYQLVQRPGPKNALGRYKFHFDNSFSVYLHGTSEPSLF 406 Query: 333 NNVVRFETSGCVRVRNIIDLDVW----LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 R +SGC+RV + +L +W L+KD W + H + T ++ L+ ++PV Sbjct: 407 KRTNRALSSGCIRVEKVEELALWFKTHLVKDQRLWDKLHTD----TTQSQWFALSDKLPV 462 Query: 389 HFVYISAWSPKDSIIQFRDDIY 410 VY + W +Q+R+DIY Sbjct: 463 FVVYWTVWLDDAGQVQYRNDIY 484 >gi|294677410|ref|YP_003578025.1| peptidoglycan-binding domain 1 protein [Rhodobacter capsulatus SB 1003] gi|294476230|gb|ADE85618.1| peptidoglycan-binding domain 1 protein [Rhodobacter capsulatus SB 1003] Length = 540 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 113/350 (32%), Positives = 181/350 (51%), Gaps = 17/350 (4%) Query: 86 QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 Q ++ GGW PE+ + L G+S V LR+RLI G L + +S +D + AV+ Sbjct: 193 QAEIATGGWGPEVAAKRLGPGDSGPGVIALRDRLIRMGYL--RRSVSATYDGDLHRAVQT 250 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 +Q+ G+ G+ TL +N + R++ + V L R++ + +G R++ VN+P + Sbjct: 251 YQLDQGIKADGVAGEGTLARINRTPEERMKSILVALERLRWMNGLDLGKRHIWVNLPDFT 310 Query: 205 LEAVENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 V++GK+ + +VG + DR+TP + ++ NP W +PRSI K+ + +++++ Sbjct: 311 ARIVDDGKMSFETVTVVGMNQGDRRTPEFSDVMEMMVINPSWSVPRSITVKEYLPMMQRN 370 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 P +I ++D +G+ V E V++ + NF F RQ P NA+ K F + N Sbjct: 371 PG--AAGHIQLVDSRGRAVARESVNFAAYNARNFPFAMRQPPSNGNALGLVKFLFPNPYN 428 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP LF VR + GC+RV DL LL + + V+KT T V Sbjct: 429 IYLHDTPSKSLFQKDVRAFSHGCIRVGRPFDLAYALLAAQEADPEGYFKSVLKTGAETTV 488 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYG--------LDNVHVGIIPL 422 KL VPVH VY +A+ I++RDD+YG LD V + PL Sbjct: 489 KLRDPVPVHLVYFTAFPNAQGRIEYRDDVYGRDAALFAALDKAGVALAPL 538 >gi|114332479|ref|YP_748701.1| peptidoglycan binding domain-containing protein [Nitrosomonas eutropha C91] gi|114309493|gb|ABI60736.1| Peptidoglycan-binding domain 1 protein [Nitrosomonas eutropha C91] Length = 561 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 110/332 (33%), Positives = 181/332 (54%), Gaps = 16/332 (4%) Query: 94 WPELP-----IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA----FDAYVESAVKL 144 W +P IRP H ++S+ R R + P G+ V+ +D +E AVK Sbjct: 225 WTRIPEETSLIRP-HTRHTSIPQVRQRIQEAYHIFEKPEYGIVVSDSEFYDDQLEIAVKA 283 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ +HGL+ G++ +T AMN+ ++QL++ L R++ L +K+G RY+LVNI + Sbjct: 284 FQRQHGLNADGIIGKNTRRAMNITPGEHVQQLRITLERLR-WLPRKLGDRYILVNIAGFN 342 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L AV+ L ++VGR R TP +S+I ++ NPYW +P SI +KD++ R +P Sbjct: 343 LVAVQENVRVLDMKIVVGRDYRSTPSFNSKITHLVLNPYWNVPASIARKDLLPKQRYNPD 402 Query: 265 YLKDNNIHMIDEKG--KEVFVEEVDWNSPEPP-NFIFRQDPGKINAMASTKIEFYSRNNT 321 Y I + + E+ + +DW+S +I RQDPG+ NA+ + K F + + Sbjct: 403 YFASEGIRVFSDYKYESELNPDFIDWHSTSRSLPYILRQDPGRRNALGTIKFMFPNPFSI 462 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK 381 Y+HDTP LF +R +SGC+R+ + L ++L ++ + I E + + KT V Sbjct: 463 YLHDTPSKYLFQKDIRTFSSGCIRLEKPLQLAEFVLGQ--SFEQADIAEKISSGKTQTVH 520 Query: 382 LATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L ++PV+ +Y++AWS + + F D+YG D Sbjct: 521 LPEKIPVYLLYLTAWSDEQGEVYFSSDVYGRD 552 >gi|119774749|ref|YP_927489.1| peptidoglycan binding domain-containing protein [Shewanella amazonensis SB2B] gi|119767249|gb|ABL99819.1| peptidoglycan-binding domain 1 [Shewanella amazonensis SB2B] Length = 472 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 109/326 (33%), Positives = 174/326 (53%), Gaps = 10/326 (3%) Query: 96 ELPIRPLHL------GNSSVSVQRLRERLIISGDLDPSKGLSVA-FDAYVESAVKLFQMR 148 E P +P+ L G+S V + +RL + GD++ G +++ +D V VK FQ R Sbjct: 138 EQPWQPIVLNGLLRPGDSHTEVVAIAKRLWLLGDMETEPGYALSRYDDEVAQGVKAFQHR 197 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL ++ TL +N+ D R +L + + ++ Q + YVLVNIPA LE V Sbjct: 198 HGLKQDAVIGPKTLYWLNLAPDTRAARLARDYL-LQSRERQTLPSTYVLVNIPAFDLELV 256 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 ++G+ + S VIVG+ R+TP + S I+ ++ NP W +PR +++ D++ +R+D YL Sbjct: 257 DDGEALMHSRVIVGKPSRKTPFIQSEISAVVVNPSWRVPRRLMRLDVLPKVRKDGSYLSR 316 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNF--IFRQDPGKINAMASTKIEFYSRNNTYMHDT 326 + +G+EV + + S F + Q PG NA+ K+ F + +N Y+HDT Sbjct: 317 KGFIVWSREGEEVKETDDFFQSAAAGKFPYLLEQRPGPDNALGRFKLHFANEDNVYLHDT 376 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P+ LF+ +R +SGCVRV I +L WL R + + + T L + Sbjct: 377 PDKHLFDEPMRALSSGCVRVEKINELSAWLANGRLADPRRWQQTLQTPQTTRWFTLKERL 436 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGL 412 PVHFVY ++W + QFR+DIYG+ Sbjct: 437 PVHFVYWTSWVDAEGKAQFREDIYGI 462 >gi|146277082|ref|YP_001167241.1| peptidoglycan binding domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555323|gb|ABP69936.1| Peptidoglycan-binding domain 1 protein [Rhodobacter sphaeroides ATCC 17025] Length = 544 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 114/344 (33%), Positives = 179/344 (52%), Gaps = 16/344 (4%) Query: 89 LSRGGWP-ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 ++ GGW ++P L G + V LR RL++ G L + ++DA +E+AV+ FQ+ Sbjct: 201 IAAGGWGLQVPAGKLRPGATGEGVLALRNRLMVMGYL--GRSTVASYDASIEAAVRAFQI 258 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 HGL P G+V TL AMNV + R+ + V L R ++ L G R++ VN+ S Sbjct: 259 DHGLTPDGVVGEGTLAAMNVSPETRLESVLVALER-ERWLAIDRGERHIWVNLTDFSARI 317 Query: 208 VENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 VE GKV + ++G+ D+++P + ++ NP W +PRSI K+ + LL+++P Sbjct: 318 VEGGKVTFETRSVIGKDSPDQRSPEFSDEMEYMVINPSWHVPRSITTKEYLPLLQRNPNA 377 Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYM 323 ++ +ID +G+ V V++N+ NF + RQ P NA+ K F + N Y+ Sbjct: 378 AA--HLKLIDSRGQVVNRGSVNFNAYNARNFPYSMRQPPSDGNALGLVKFMFPNPWNIYL 435 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 HDTP LF+ VR + GC+R+ D LL + ++T K T V+L Sbjct: 436 HDTPSKSLFDREVRAFSHGCIRLAQPFDFAYALLARQSDDPEGLFQSHLRTGKETVVRLE 495 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV------HVGIIP 421 VPVH VY +AW+ + +R DIYG D V G++P Sbjct: 496 EPVPVHLVYSTAWAGPTGRMSYRQDIYGRDGVILEALRAAGVVP 539 >gi|188591281|ref|YP_001795881.1| hypothetical protein RALTA_A0493 [Cupriavidus taiwanensis LMG 19424] gi|170938175|emb|CAP63161.1| conserved hypothetical protein, COG2989; putative exported protein [Cupriavidus taiwanensis LMG 19424] Length = 529 Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 111/346 (32%), Positives = 175/346 (50%), Gaps = 12/346 (3%) Query: 80 KAIAFYQDILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 +A+A Y+DI + W P LP L G L RL+ GDL ++ Sbjct: 161 QALARYRDIARQPVWQQPLPPLPASKLTPGQPWAGAAALTARLVALGDLPAGTQPPARYE 220 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 + VK FQ RHGL G++ ++TL +N+P+ R+RQ+++ + R++ G R Sbjct: 221 GALVDGVKAFQSRHGLQADGVIGAATLAQLNLPIADRVRQIELTMERLR--WTPLDGPRM 278 Query: 196 VLVNIPAASLEAVE--NGK--VGLRSTVIVGR-VDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VN+P L A E +GK + L VIVG+ +D +TP+ + I F+PYW IP SI Sbjct: 279 IVVNVPEFMLRAYEIRDGKLDIKLEMKVIVGKALDTRTPLFEEDMRYIEFSPYWNIPPSI 338 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF-VEEVDWNSPEPPNFIFRQDPGKINAMA 309 +++ + LR+DP Y + + GK V + E + ++ + RQ PG +NA+ Sbjct: 339 ARRETVPRLRRDPGYFSRQGLEFVGGDGKAVTTLSEENLDAVLNGSLRIRQRPGPLNALG 398 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F + N Y+H TP P LF R + GC+RV + L ++L D P W+ I Sbjct: 399 DIKFVFPNNENIYLHHTPSPQLFKRDRRDFSHGCIRVEAPVALAQFVLHDMPDWNEARIR 458 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 E + K+ V+L +PV Y + + D + F+ DIYG D + Sbjct: 459 EAMARGKSNTVRLQQPLPVVLAYGTVIARADGRVSFQPDIYGHDKL 504 >gi|332532859|ref|ZP_08408732.1| hypothetical protein PH505_aj00520 [Pseudoalteromonas haloplanktis ANT/505] gi|332037705|gb|EGI74156.1| hypothetical protein PH505_aj00520 [Pseudoalteromonas haloplanktis ANT/505] Length = 441 Score = 179 bits (453), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 115/352 (32%), Positives = 177/352 (50%), Gaps = 10/352 (2%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPS-- 127 S + I +TEKAI +YQ+I+++GG+ L L LG+++ V L +RL DL + Sbjct: 71 SAQLIERTEKAINWYQEIVNKGGFTHLYNDELLELGSNNKQVSLLAQRLYQERDLKTNVC 130 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 FD +E AVK FQ RHGL G V T ++NVP ++ +L++N RI Sbjct: 131 DEAICTFDKDIEQAVKQFQSRHGLKVDGRVGKRTFASLNVPAQQKLDKLKLNFYRITNFA 190 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 +YV VNIP SL V+ G V L++ VIVG+ +TP I + + NP W IP Sbjct: 191 GAS-DEQYVYVNIPEYSLRFVKAGDVKLKNNVIVGKPSWETPAFSDEIEKFVVNPEWRIP 249 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEK---GKEVFVEEVDWNSPEPPNF--IFRQDP 302 SI K++ + +DP YL NNI + + V +DW+S +P F + Sbjct: 250 TSIATKEIAPKVAEDPDYLVKNNIEIRKNSYLDSQTVNPSNIDWDSIKPYQFDHFLVKRA 309 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK-DTP 361 G+ N + K F + Y+HDTP F+ R + GC+R+ L ++K + Sbjct: 310 GEENPLGEVKYLFPNAEAIYVHDTPAKHRFSQANRALSHGCIRIEKPFSLAREIIKYEGE 369 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + +++ + T L +P+H VY +AW ++ ++ FRDDIY D Sbjct: 370 AQTLNNMDTALAQNSTQTFYLDEPLPIHLVYWTAWVDENKLVNFRDDIYQRD 421 >gi|320355292|ref|YP_004196631.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfobulbus propionicus DSM 2032] gi|320123794|gb|ADW19340.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfobulbus propionicus DSM 2032] Length = 636 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 110/341 (32%), Positives = 187/341 (54%), Gaps = 8/341 (2%) Query: 79 EKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA-FDA 136 ++A+ Y+ I S+GGWP++P+ P L G V +R RL I+ + G + +D+ Sbjct: 241 KEALIRYKQIASKGGWPQVPMGPSLRPGAHDDRVPAIRRRLAITDHYHATGGGNAKQYDS 300 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 ++ +AVK FQ RH L+P G+V ST+ AMNV V RI+QL+VNL R + ++ M + Sbjct: 301 HLVAAVKAFQARHHLEPDGVVGKSTVMAMNVTVAERIKQLRVNLERTRWVI-HDMPSSNL 359 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +V+I L+ + S V+VG+ QTPI S I I+ NP W I I++ + + Sbjct: 360 IVDIAGFMLQYYHDNAPVWTSKVMVGQPFHQTPIFRSAITYIVLNPTWTITPDIVKNETV 419 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIE 314 + +DP YL + ++D G V + W + F + RQD G+ N++ K Sbjct: 420 PSIIKDPGYLAKQRLRVLDRNGNAVDPNTIPWTQYQGRYFPYTLRQDAGRDNSLGLIKFL 479 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT--WSRYHIEEVV 372 F + + Y+HDTP LF R + GC+RV+N ++L +L + P + +++++ Sbjct: 480 FPNPYHVYLHDTPSKSLFGRTRRAFSHGCIRVQNPLELGRMILANDPGNPTTPAKMDQIL 539 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + KTT V L +P++ +Y++A + +D+ + F+ D+Y D Sbjct: 540 ASGKTTTVILKQPLPIYLMYLTA-NVQDNKVMFKPDLYSRD 579 >gi|113970169|ref|YP_733962.1| peptidoglycan binding domain-containing protein [Shewanella sp. MR-4] gi|113884853|gb|ABI38905.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. MR-4] Length = 542 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 156/288 (54%), Gaps = 11/288 (3%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 +A+K+FQ +HGL G++ TL +N R + L N +R +++ + + Y+++N Sbjct: 253 AAIKVFQTQHGLQADGVIGKQTLYWLNQSPYARAQLLAKNTLR-QQIFTRTLPASYLVIN 311 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 +PA L+ VE GKV L S VIVG+ R TP+L S I+ ++ NP W +PR+I+++D++ + Sbjct: 312 VPAFELQFVEAGKVILNSKVIVGKASRPTPLLSSHISSVVVNPQWRVPRTIVRRDILPHI 371 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYS 317 RQD YL+D + D G V +W +F +R Q PG NA+ K F + Sbjct: 372 RQDGHYLQDRGFDVYDYDGARVEHSPQEWQELASSHFPYRLVQRPGAKNALGRYKFHFDN 431 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTPTWSRYHIEEVVK 373 + Y+H T EP LF R +SGC+RV + +L W L+KDT W + Sbjct: 432 SFSVYLHGTSEPSLFKKTDRALSSGCIRVEKVEELARWFQTHLVKDTRLWDKL----TPN 487 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 T ++ L+ +PV+ VY +AW IQ+R+DIY L+ +P Sbjct: 488 TTQSQWFALSDTMPVYTVYWTAWLDDAGQIQYRNDIYHLEAEFTQAVP 535 >gi|30250492|ref|NP_842562.1| putative periplasmic protein [Nitrosomonas europaea ATCC 19718] gi|30139333|emb|CAD86485.1| putative periplasmic protein [Nitrosomonas europaea ATCC 19718] Length = 578 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 101/307 (32%), Positives = 172/307 (56%), Gaps = 8/307 (2%) Query: 112 QRLRERLII--SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 QR+RE + + D + S +D +E+A+K FQ ++GL+ G+V +T AMN+ Sbjct: 255 QRIREAYSVFEKPEYDIASDDSELYDDQLETAIKAFQYQYGLNTDGVVGKNTRRAMNMTA 314 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 I+QL++ L R++ L ++ RY+LVNI +L A+ N L ++VGR R TP Sbjct: 315 VEHIQQLRITLERLR-WLPREFSNRYILVNIAGFNLAAIRNNVRVLNMRIVVGRDYRSTP 373 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV--EEVD 287 +SRI+ ++ NPYW +P SI KD++ + +P Y I + + E+ + + +D Sbjct: 374 SFNSRISHLVLNPYWNVPASIASKDLLPKQKHNPDYFASEGIRVFSDYHYELELDPDAID 433 Query: 288 WNS-PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 W++ ++ RQDPGK NA+ + K F + + Y+HDTP LF +R +SGC+R+ Sbjct: 434 WHAFSRSFPYVLRQDPGKRNALGTIKFMFPNPFSIYLHDTPSKSLFQRDIRTFSSGCIRL 493 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 + L ++L P++ + +I E + + KT V L +PV+ +Y++AW+ + F Sbjct: 494 EKPMQLAEFVLG--PSFEKANILEKIDSGKTQTVHLPEPIPVYLLYLTAWNDGQGEVHFS 551 Query: 407 DDIYGLD 413 D+YG D Sbjct: 552 ADVYGRD 558 >gi|114047641|ref|YP_738191.1| peptidoglycan binding domain-containing protein [Shewanella sp. MR-7] gi|113889083|gb|ABI43134.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. MR-7] Length = 558 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 101/294 (34%), Positives = 157/294 (53%), Gaps = 11/294 (3%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + A+K FQ +HGL G++ TL +N R + L N +R++ + + + Sbjct: 263 YDDELVRAIKNFQTQHGLQADGVIGKQTLYWLNQSPYARAKLLAKNTLRLQ-IFTRTLPA 321 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 Y+++NIPA L+ VE GKV L S VIVG+ R TP+L S I+ ++ NP W +PR+I+++ Sbjct: 322 SYLVINIPAFELQFVEAGKVILNSKVIVGKASRPTPLLSSHISSVVVNPQWRVPRTIVRR 381 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMAST 311 D++ +RQD YL+D + D G V +W +F +R Q PG NA+ Sbjct: 382 DILPHIRQDGHYLQDRGFDVYDYDGARVEHSPQEWQELASSHFPYRLVQRPGAKNALGRY 441 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTPTWSRYH 367 K F + + Y+H T EP LF R +SGC+RV + +L W L+KDT W + Sbjct: 442 KFHFDNSFSVYLHGTSEPSLFKKTDRALSSGCIRVEKVEELARWFQTHLVKDTRLWDKL- 500 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 T ++ L+ +PV+ VY +AW IQ+R+DIY L+ +P Sbjct: 501 ---TPNTTQSQWFALSDTMPVYTVYWTAWLDDAGQIQYRNDIYHLEAEFSQAVP 551 >gi|163746379|ref|ZP_02153737.1| peptidoglycan binding domain protein, putative [Oceanibulbus indolifex HEL-45] gi|161380264|gb|EDQ04675.1| peptidoglycan binding domain protein, putative [Oceanibulbus indolifex HEL-45] Length = 583 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 107/333 (32%), Positives = 179/333 (53%), Gaps = 10/333 (3%) Query: 86 QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + +LS+GGW P +P L G++ V LR RLI G L+ S +V +DA + AV+ Sbjct: 237 EKLLSQGGWGPSVPAGKLEPGDTGNDVIALRNRLIAMGYLERSN--AVGYDATLTDAVRQ 294 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL+ G+ +T++ +N+ V+ R++ + V L R ++ G R++LVNIP S Sbjct: 295 FQEAHGLNTDGVAGPATMKQINIGVEQRLQSVMVALER-ERWFNTDRGKRHILVNIPDFS 353 Query: 205 LEAVENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + +++GK ++ +VG R DR TP + ++ NP W +PRSI+ + + L+Q+ Sbjct: 354 AKIIDDGKTTFQTRSVVGAAREDRPTPEFSDVMEHMVVNPSWYVPRSIVTGEYLPQLKQN 413 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 + ++I + D G++V V+++ F F RQ P NA+ K F ++ N Sbjct: 414 RNAV--SHIEITDRSGRKVNRGAVNFSKYTARTFPFSMRQPPSNTNALGLVKFMFPNKYN 471 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP LF+ VR + GCVR+ + LL + V+++ + T + Sbjct: 472 IYLHDTPAKSLFDRDVRAFSHGCVRLAEPFEFAYALLAPQSADPEGDFQAVLRSGRETRI 531 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L +VPVH +Y +A + ++RDD+YG D Sbjct: 532 VLEEQVPVHLIYRTAVTNARGHTEYRDDVYGRD 564 >gi|254503422|ref|ZP_05115573.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] gi|222439493|gb|EEE46172.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] Length = 562 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 110/344 (31%), Positives = 176/344 (51%), Gaps = 12/344 (3%) Query: 76 AQTEKAIAFYQDILSRGGWPELP----IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 A+ ++ +A Y++ + G + +P ++P G S V LR+RLI ++ Sbjct: 210 ARLKRRLAQYREKAATGPFTSVPDGDVLKP---GMSDTRVAALRQRLIEEDIPGAAEHSG 266 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 +D + AV FQ HGL G++ TL +N+P++ ++ Q+++N+ R ++ + + Sbjct: 267 DVYDGVLVEAVTTFQDHHGLANDGVIGKETLARLNIPLEEKLVQMELNMER-RRWMRDDL 325 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G YV VN+ L+ V+ GK + V+VG+ TP+ ++ + NP+W +P SI Sbjct: 326 GSFYVFVNLADQELKVVKEGKTIHTAPVVVGKPYHATPVFSDTLDYVEINPFWNVPYSIA 385 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMA 309 + + L+Q+P L NI + + G E+ ++ WNS NF F RQDPG NA+ Sbjct: 386 TSEYLPKLKQNPSALSSKNIRVFRD-GTEIAPTQIAWNSYARGNFPFRLRQDPGNSNALG 444 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F + N Y+HDTP LF+ R + GC+RV + L LL + H E Sbjct: 445 RIKFMFPNEFNIYIHDTPSKSLFSRAERAFSHGCIRVSDPFALADVLLAHK-NANEGHWE 503 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +V T K T VK + + VH Y++AW KD FR DIY D Sbjct: 504 KVRDTEKRTVVKPSVPIEVHLTYLTAWMNKDGSTHFRKDIYRRD 547 >gi|307545799|ref|YP_003898278.1| hypothetical protein HELO_3209 [Halomonas elongata DSM 2581] gi|307217823|emb|CBV43093.1| hypothetical protein HELO_3209 [Halomonas elongata DSM 2581] Length = 546 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 115/361 (31%), Positives = 182/361 (50%), Gaps = 26/361 (7%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPEL-----PIRPLHLGNSSVSVQRLRERLIISGDLD-- 125 E Q + +A Y++I +GGWP L P+RP G++ V LRERL G+ Sbjct: 183 EPYEQLREGLAHYREIKRQGGWPALMNVEDPLRP---GDTGTEVTALRERLAAIGNDQLV 239 Query: 126 -------PSKGLSV----AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 P+ L +D + AV+ FQ H L G+V TL+A+N+ V+ RI Sbjct: 240 AADEGYYPTIELQAPEPRVYDEALVEAVRRFQRHHLLADDGVVGPRTLKALNMSVERRID 299 Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 Q++ N+ R + LL + +VLV+I L R+ ++VG+ R+TP L S Sbjct: 300 QIRANMERARWLL-HGLPESFVLVDIAGYDLRYFRPNGDTWRARIVVGQPYRRTPSLRSE 358 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 I + NP W +P +I+++D++ +R+DP YL N+ ++ GK++ VDW++P Sbjct: 359 ITHLTINPTWTVPPTIMREDVLPKVRRDPGYLATKNLSVLSPSGKQLDPASVDWSNPG-- 416 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 + RQ G N + + F + + Y+HDTP LF+ R +SGC+RV +++L Sbjct: 417 GVMLRQQAGPNNPLGQLVVRFPNDHLVYLHDTPSRGLFSRSQRALSSGCIRVEGVLELAQ 476 Query: 355 WLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 L DT T + ++ ++ KT V LA VPV Y + D + FR DIY D+ Sbjct: 477 LLFDDTGT--QANVRRLIADGKTRNVLLARHVPVVLHYWTVQPEPDGELAFRPDIYDRDD 534 Query: 415 V 415 Sbjct: 535 A 535 >gi|149915292|ref|ZP_01903820.1| peptidoglycan binding domain protein, putative [Roseobacter sp. AzwK-3b] gi|149811013|gb|EDM70852.1| peptidoglycan binding domain protein, putative [Roseobacter sp. AzwK-3b] Length = 536 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 103/332 (31%), Positives = 177/332 (53%), Gaps = 10/332 (3%) Query: 88 ILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 + RGGW P + + G S +V LR+RL+ G LD S + +D + AV+ FQ Sbjct: 192 LADRGGWGPTVSAESVKPGQSGAAVTALRDRLVAMGFLDRSA--TQLYDETMLHAVQRFQ 249 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 + HGL P G+ TL +NVPV R++ L V + R ++ + +G R++LVN+ Sbjct: 250 LAHGLTPDGVAGPGTLAEINVPVQERLKSLIVAMER-ERWINMALGERHILVNLTDFHAR 308 Query: 207 AVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 +++G V + V++G+ DR++P ++ ++ NP W +PRSI + + ++++P Sbjct: 309 IIDDGAVSFETRVVIGKNTGDRRSPEFSDEMDHMVINPTWHVPRSIAVGEYLPKMKRNPN 368 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTY 322 + +++ + + +G++V V++ + NF F +Q P + NA+ K F ++ N Y Sbjct: 369 AV--SHLKLYNNRGQQVSRGAVNFAAYNASNFPFSIKQPPSQSNALGLVKFMFPNKYNIY 426 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL 382 +HDTP LF VR + GCVRV+ +L LL T + ++ T + V L Sbjct: 427 LHDTPAKDLFGREVRAYSHGCVRVQKPFELAYELLSKQETDPKRTFHSILDTGREKRVNL 486 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 VPVH +Y +A++ +Q+R DIYG D Sbjct: 487 EQVVPVHIIYRTAFTQAKGPVQYRRDIYGRDG 518 >gi|120434782|ref|YP_860468.1| peptidoglycan binding domain-containing protein [Gramella forsetii KT0803] gi|117576932|emb|CAL65401.1| protein containing peptidoglycan binding-like domain [Gramella forsetii KT0803] Length = 543 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 104/316 (32%), Positives = 170/316 (53%), Gaps = 6/316 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDP-SKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 IRP G++S + + +RL G + S + ++ ++ AVK FQ+ H L ++ Sbjct: 222 IRP---GDNSDRMPSIAKRLSELGYFNGISDSTNTIYNEDIQKAVKEFQLDHDLQEDALL 278 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 S+T+ +N+ R Q+ VNL R + + +G Y++VNIP L ++ Sbjct: 279 GSTTISNLNLTRRDRYHQILVNLERWR-WYPKNLGKHYIIVNIPDYELSVIKEEDTIRTH 337 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 ++VG R+TPI I I++NP W IP +I + D++ ++D Y + NI + D + Sbjct: 338 KIMVGTEVRKTPIFSDEIGYIIYNPTWTIPPTIKKNDVIPGAKKDIGYFQKKNIKIYDSE 397 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 G +V VDWNS + + +RQ G N + KI + + Y+HDTP LF R Sbjct: 398 GTDVDPASVDWNSSKARGYTYRQPAGPTNPLGIVKIIYPNEYLIYLHDTPSRSLFEKNAR 457 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 ++SGCVRV++ + L +LL D ++ IEE++K+ KTT + + +V VH Y + + Sbjct: 458 AQSSGCVRVQDALGLAKYLLSDQDSYDDEKIEEILKSGKTTQITVKQKVKVHHFYWTVYQ 517 Query: 398 PKDSIIQFRDDIYGLD 413 KD+ I+F DDIY LD Sbjct: 518 KKDA-IKFIDDIYNLD 532 >gi|120598924|ref|YP_963498.1| peptidoglycan binding domain-containing protein [Shewanella sp. W3-18-1] gi|120559017|gb|ABM24944.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. W3-18-1] Length = 484 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 107/333 (32%), Positives = 172/333 (51%), Gaps = 16/333 (4%) Query: 90 SRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 S+ W L + L +G + V + +RL + GD+ + + + +K FQ+R Sbjct: 144 SQFSWETLMLENKLTVGQTHPIVNTIAKRLWLLGDMPKEVDVEQVYTDELMLGIKRFQLR 203 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL G++ TL +N R L N +R +++ +K+ RY+L+N+PA ++ V Sbjct: 204 HGLQTDGVIGKQTLYWLNQSPRQRAVLLARNELR-QRIFSRKLTPRYLLINVPAFEMKLV 262 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 E + L S VIVG+ RQTPIL S+I+ I+ NP W +P SI+++D++ +R+D YL+D Sbjct: 263 EQEQTVLTSKVIVGKSSRQTPILDSQISSIVLNPSWRVPSSILRRDILPHIRKDGYYLQD 322 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDT 326 + D G+ +F +W F ++ Q PG NA+ K F + + Y+H T Sbjct: 323 REFDVYDYSGQLIFHTTEEWQELASSRFPYQLVQRPGPKNALGKYKFHFDNSFSVYLHGT 382 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTPTWSRYHIEEVVKTRKTTP--V 380 EP LF R +SGC+R+ + +L W L+KD W R + T P Sbjct: 383 SEPALFKRENRALSSGCIRIEKVNELAQWFKRNLVKDKGLWDR------LAPNVTDPQWF 436 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L+ ++PVH VY +AW +R+DIY L+ Sbjct: 437 ALSEKLPVHLVYWTAWLDDKGQDHYRNDIYHLE 469 >gi|325981933|ref|YP_004294335.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas sp. AL212] gi|325531452|gb|ADZ26173.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas sp. AL212] Length = 543 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 107/350 (30%), Positives = 191/350 (54%), Gaps = 21/350 (6%) Query: 79 EKAIAFYQDILSRG-GWPELPIRP-LHLGNSSVSVQRLRERL--------IISGDLDPSK 128 ++ +A YQ +L W +P P L G++ S+ +R+R+ ++ +L P+ Sbjct: 191 KRTLAHYQILLKNTPEWIRIPSSPSLRPGDTYPSIPLIRQRIAQAYAADGLLEFNLIPNA 250 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 + +D + +A+K FQ +HGL+ G++ +T+ A+N+P++ +IRQL++N+ R++ L Sbjct: 251 --NQLYDTELVAAIKAFQAQHGLNTDGIIGKNTINALNIPLEWKIRQLRINMERLR-WLP 307 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + +G R++LVN L A+EN + L +IVGR R TP + ++ ++ NPYW +P Sbjct: 308 RNLGQRHLLVNTAGFYLTAIENDEPVLNMRIIVGRDYRSTPSFNGTLSHMVLNPYWNVPA 367 Query: 249 SIIQKDMMALLRQDPQYLKDNN--IHMIDEKGKEVF-VEEVDWNSPEP--PNFIFRQDPG 303 SI +KD++ +QDP Y ++ E+G + +DW+ + P F+ RQDPG Sbjct: 368 SIARKDLLPKQQQDPTYFTTAGFKVYPAQERGAQAIDPGMIDWHELKQRFPYFL-RQDPG 426 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 NA+ K F + + Y+HDTP LF +R +SGC+R+ +L + L Sbjct: 427 THNALGKIKFMFSNPFSIYLHDTPSKSLFRKDIRTFSSGCIRLEKPFELAAFALNQPSLP 486 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 ++ + +++ KT L +P++ VYI+AW+ + + F DIY D Sbjct: 487 EKFSAD--LESDKTITTHLPKPLPIYLVYITAWADEHHKVYFYPDIYDRD 534 >gi|16125758|ref|NP_420322.1| peptidoglycan binding domain-containing protein [Caulobacter crescentus CB15] gi|221234516|ref|YP_002516952.1| cell wall degradation protein [Caulobacter crescentus NA1000] gi|13422888|gb|AAK23490.1| peptidoglycan binding domain protein [Caulobacter crescentus CB15] gi|220963688|gb|ACL95044.1| cell wall degradation protein [Caulobacter crescentus NA1000] Length = 502 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 107/336 (31%), Positives = 171/336 (50%), Gaps = 22/336 (6%) Query: 81 AIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAY 137 +A Y+DI ++GGW + P L G + V L RL DP+ + A FDA Sbjct: 176 GLATYRDIAAKGGWLPIAAGPELKEGVTGARVVALEARLAAE---DPTVAVDAAPVFDAA 232 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + AV+ Q R GL+P+G+VD +TL A+N+PV+ RI Q+ N+ R + L Q + + Sbjct: 233 LTQAVQRAQKRFGLNPNGIVDRATLAALNIPVERRIDQIVANMERWR-WLPQTLPAERIQ 291 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VN+ AA L + L + GR +TP+L S I+ I+ NP W +P+SI K++ Sbjct: 292 VNVAAAILSVFHHDTPTLTMRAVTGRPGDETPMLSSMIHSIVLNPPWNVPQSIASKEIWP 351 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 R P YL N+ +I +G ++ Q G + A+ K +F + Sbjct: 352 KERASPGYLARNDFIVIPIEGGGTRLQ---------------QKAGPLAALGKVKFDFNN 396 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 Y+HDTP F++ R + GCVR++ I+L +++D PTW+ + E + + +T Sbjct: 397 PYGVYLHDTPSRSRFDSFSRLASHGCVRLQKPIELVNEVMRDDPTWTPEKVNETLASGET 456 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 KL ++ V+ +Y +A+ D + FR D YG D Sbjct: 457 VRAKLPQQIAVYLLYWTAYVTPDGQVNFRQDPYGWD 492 >gi|146292990|ref|YP_001183414.1| peptidoglycan binding domain-containing protein [Shewanella putrefaciens CN-32] gi|145564680|gb|ABP75615.1| Peptidoglycan-binding domain 1 protein [Shewanella putrefaciens CN-32] Length = 484 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 107/333 (32%), Positives = 172/333 (51%), Gaps = 16/333 (4%) Query: 90 SRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 S+ W L + L +G + V + +RL + GD+ + + + +K FQ+R Sbjct: 144 SQFSWETLMLENKLTVGQTHPIVNTIAKRLWLLGDMPKEVDVEQVYTDELMLGIKRFQLR 203 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL G++ TL +N R L N +R +++ +K+ RY+L+N+PA ++ V Sbjct: 204 HGLQTDGVIGKQTLYWLNQSPRQRAVLLARNELR-QRIFSRKLTPRYLLINVPAFEMKLV 262 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 E + L S VIVG+ RQTPIL S+I+ I+ NP W +P SI+++D++ +R+D YL+D Sbjct: 263 EQEQTVLTSKVIVGKSSRQTPILDSQISSIVLNPSWRVPSSILRRDILPHIRKDGYYLQD 322 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDT 326 + D G+ +F +W F ++ Q PG NA+ K F + + Y+H T Sbjct: 323 REFDVYDYSGQLIFHTPEEWQELASSRFPYQLVQRPGPKNALGKYKFHFDNSFSVYLHGT 382 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTPTWSRYHIEEVVKTRKTTP--V 380 EP LF R +SGC+R+ + +L W L+KD W R + T P Sbjct: 383 SEPALFKRENRALSSGCIRIEKVNELAQWFKRNLVKDKGLWDR------LAPNVTDPQWF 436 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L+ ++PVH VY +AW +R+DIY L+ Sbjct: 437 ALSEKLPVHLVYWTAWLDDKGQDHYRNDIYHLE 469 >gi|319426480|gb|ADV54554.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella putrefaciens 200] Length = 484 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 107/333 (32%), Positives = 172/333 (51%), Gaps = 16/333 (4%) Query: 90 SRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 S+ W L + L +G + V + +RL + GD+ + + + +K FQ+R Sbjct: 144 SQFSWETLMLENKLTVGQTHPIVNTIAKRLWLLGDMPKEVDVEQVYTDELMLGIKRFQLR 203 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL G++ TL +N R L N +R +++ +K+ RY+L+N+PA ++ V Sbjct: 204 HGLQTDGVIGKQTLYWLNQSPRQRAVLLARNELR-QRIFSRKLTPRYLLINVPAFEMKLV 262 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 E + L S VIVG+ RQTPIL S+I+ I+ NP W +P SI+++D++ +R+D YL+D Sbjct: 263 EQEQTVLTSKVIVGKSSRQTPILDSQISSIVLNPSWRVPSSILRRDILPHIRKDGYYLQD 322 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDT 326 + D G+ +F +W F ++ Q PG NA+ K F + + Y+H T Sbjct: 323 REFDVYDYSGQLIFHTPEEWQELASSRFPYQLVQRPGPKNALGKYKFHFDNSFSVYLHGT 382 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTPTWSRYHIEEVVKTRKTTP--V 380 EP LF R +SGC+R+ + +L W L+KD W R + T P Sbjct: 383 SEPALFKRENRALSSGCIRIEKVNELAQWFKRNLVKDKGLWDR------LAPNVTDPQWF 436 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L+ ++PVH VY +AW +R+DIY L+ Sbjct: 437 ALSEKLPVHLVYWTAWLDDKGQDHYRNDIYHLE 469 >gi|70729780|ref|YP_259519.1| hypothetical protein PFL_2412 [Pseudomonas fluorescens Pf-5] gi|68344079|gb|AAY91685.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5] Length = 523 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 97/283 (34%), Positives = 151/283 (53%), Gaps = 6/283 (2%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 A+ + SAVK FQ+ H L G+V + TL+ MN+ R QL++NL R++ L Q Sbjct: 238 AYSGELVSAVKNFQLGHSLQADGVVGAGTLKEMNISPAERREQLRINLERLR-WLAQDYE 296 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 VLVN+ AA L ++ V ++ VGR +RQTP+L S++ R+ NP W +P +I++ Sbjct: 297 PNLVLVNVAAAQLTFYQHDAVVWQTRTQVGRAERQTPLLKSQVTRLTLNPTWTVPPTILK 356 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 +D + +R+D +L N+ ++D G+ + E++DW+ P N + RQ G N + Sbjct: 357 EDKLPEIRRDQGFLNRQNLQVLDANGQPLAAEDIDWDRPG--NILLRQGAGPRNPLGRIA 414 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 I F + + Y+HDTP LF+ R +SGCVRV + L WLL R E++ Sbjct: 415 IRFPNPFSVYLHDTPSQALFSKGPRAFSSGCVRVEQALQLRDWLLSPA---ERLRTNELL 471 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 T T +LA VP+ Y + + + + DIYG D V Sbjct: 472 ATGLTHEFRLAKPVPILLSYWTVQADSHGQLLYAPDIYGHDQV 514 >gi|218461005|ref|ZP_03501096.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli Kim 5] Length = 245 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 93/211 (44%), Positives = 137/211 (64%), Gaps = 4/211 (1%) Query: 34 SVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 S LD ++N +D+FD A R I S+ PI+ +++A ++AI YQ I + G Sbjct: 36 SALDGLLNAPRRGNWDDQFDAKAASRTATAIVSNTPILGPQSVASAQQAIMQYQQIAAAG 95 Query: 93 GWPEL--PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GWPE+ + L LG S +VQ LR+RL I+GDL GLS AFD+YV+ AVK FQ RHG Sbjct: 96 GWPEVNPGDQRLQLGVSHPAVQALRQRLAITGDLPREAGLSSAFDSYVDGAVKRFQARHG 155 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L G++ TL+AMN+P D+R++QL N++R++ E +G R+++VNIPAA +EAVE+ Sbjct: 156 LPADGVLGEFTLKAMNIPADVRLQQLNTNIVRLQTFPE-DLGRRHLMVNIPAAYVEAVED 214 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 G V R T +VGR+ R T +++S+I ++ N Sbjct: 215 GSVATRHTAVVGRLSRPTHLVNSKIYEVILN 245 >gi|254476277|ref|ZP_05089663.1| peptidoglycan-binding domain 1 [Ruegeria sp. R11] gi|214030520|gb|EEB71355.1| peptidoglycan-binding domain 1 [Ruegeria sp. R11] Length = 539 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 101/333 (30%), Positives = 178/333 (53%), Gaps = 10/333 (3%) Query: 86 QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + + + GGW P + + L G+ +V LR RLI G L+ S S+ +D +E AV+ Sbjct: 193 EALQAAGGWGPTVSAKKLERGDQGGAVIALRNRLIEMGYLERSA--SLRYDTALEGAVQK 250 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL+ G+ + T+ +N PV R++ + V + R ++ L G R++LVN + Sbjct: 251 FQAAHGLEADGVAGAGTISEINKPVSARLKSVLVAMER-ERWLTPDRGERHILVNQTDFT 309 Query: 205 LEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + ++NG+V ++ ++G+ DR++P + ++ NP W +PRSII K+ + L+ + Sbjct: 310 AKIIDNGEVTFQTRSVIGKDHSDRRSPEFSDVMEHMVINPSWYVPRSIITKEYLPKLKAN 369 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 P + +I + D +G++V D++ NF + RQ P + NA+ K F ++ N Sbjct: 370 PNAV--GHIEITDSRGRKVNRSTADFSQYTARNFPYAMRQPPSRKNALGLVKFMFPNKYN 427 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP+ LF VR + GC+R+ + LL + + ++ + K T V Sbjct: 428 IYLHDTPQKSLFQREVRAFSHGCIRLAQPFEFAYALLAKQTENPKQFFDRILSSGKETKV 487 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L +VPVH +Y +A+ + ++R D+YG D Sbjct: 488 DLEQQVPVHLIYRTAFVTPEGRAEYRRDVYGRD 520 >gi|126174124|ref|YP_001050273.1| peptidoglycan binding domain-containing protein [Shewanella baltica OS155] gi|125997329|gb|ABN61404.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS155] Length = 521 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 105/326 (32%), Positives = 168/326 (51%), Gaps = 11/326 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G S V + +RL + GDL ++ + + VK FQ RHGL G++ T Sbjct: 194 LTVGMSHPFVDTIAKRLWLLGDLAIEPTTNLVYSEELVVGVKRFQQRHGLKQDGVIGKQT 253 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 L +N R L N +R +++ E+K+ Y+L+N+PA + V+NG L S VIV Sbjct: 254 LYWLNQSPKARAVLLAKNTIR-QRVFERKLEPSYLLINVPAFEMILVDNGTTVLNSKVIV 312 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 G+ RQTP+L S+I+ ++ NP W +P SI+++D++ +R++ YL + + D G+ V Sbjct: 313 GKSSRQTPLLDSQISSVVLNPSWRVPSSILRRDILPQIRRNGHYLNERQFDVYDYNGQLV 372 Query: 282 FVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 +W +F ++ Q PG NA+ K F + + Y+H T EP LFN R Sbjct: 373 QHMPEEWQDLASTSFPYQLVQRPGAKNALGKYKFHFDNSFSVYLHGTSEPSLFNKDDRAL 432 Query: 340 TSGCVRVRNIIDLDVW----LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 +SGC+R+ + +L W L+KD W + V + L+ ++PVH VY +A Sbjct: 433 SSGCIRIEKVTELAQWFKEHLVKDKRLWDKL----VPDVTEPQWFSLSQKLPVHLVYWTA 488 Query: 396 WSPKDSIIQFRDDIYGLDNVHVGIIP 421 W Q+R DIY L+ +P Sbjct: 489 WLDDSGQEQYRSDIYHLEAELTNAVP 514 >gi|256419987|ref|YP_003120640.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] gi|256034895|gb|ACU58439.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] Length = 549 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 102/305 (33%), Positives = 156/305 (51%), Gaps = 4/305 (1%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V +++RL + GDL + S F ++SA++ FQ R GL G + + L A+NV Sbjct: 236 VTSVKQRLHLLGDLALAD-TSQLFTPALDSAIRNFQDRTGLKTDGTIQAPLLNALNVTPR 294 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 RIRQ+ +N+ RI+ + + Y+LVNIPA L N K+ V+VG+ T I Sbjct: 295 QRIRQILINMERIRWVPAEPPA-EYLLVNIPAFKLYVYNNNKLDWTCNVVVGKPGANTVI 353 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 + + ++F PYW +P I+ +++ ++++ YL N+ ++ G V ++W Sbjct: 354 FSNEVKYVVFAPYWNVPPGILVNEVLPAMKRNTGYLARQNMEVVTGSGSPVNAGSLNWAR 413 Query: 291 PEPPNF--IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 NF I RQ PG NA+ K F + N Y+HDTP LF R + GC+RV Sbjct: 414 YSGGNFPYIIRQKPGGHNALGKVKFLFPNEYNIYLHDTPSKGLFGENKRTFSHGCIRVSE 473 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 L WLL+ TW++ I E + K V L VPV+ Y +A+ D + FRDD Sbjct: 474 PQHLAEWLLRKDSTWTQKKIVEAMNGSKEKFVTLKERVPVYIGYFTAFVDSDGRLNFRDD 533 Query: 409 IYGLD 413 +YG D Sbjct: 534 VYGHD 538 >gi|149278087|ref|ZP_01884226.1| cell wall degradation protein [Pedobacter sp. BAL39] gi|149231285|gb|EDM36665.1| cell wall degradation protein [Pedobacter sp. BAL39] Length = 532 Score = 173 bits (439), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 98/338 (28%), Positives = 183/338 (54%), Gaps = 20/338 (5%) Query: 79 EKAIAFYQDILSRGGWPELP---IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 +K + Y + G + ++ ++ +G+S+++V+++R RLI GD K S FD Sbjct: 201 KKRLTSYYQLQQEGKFEDISSGKLKVYRIGDSALTVRQVRLRLIQFGD-STLKDSSSVFD 259 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 + + ++VK Q ++G+ +G ++ + ++A+NVP++ RI+Q+ +N+ R++ + + G RY Sbjct: 260 STLRASVKRAQGQYGMGQNGNINKALIKALNVPLEQRIKQILINMERMRWMPQMPDG-RY 318 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 +L NIP L E+ K L ++VG+ +T I +++ I+F+PYW IP SI++ ++ Sbjct: 319 LLANIPEYRLHVFEDHKTVLNMGIVVGKAANKTVIFSNKMRNIVFSPYWNIPASIVRAEV 378 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + ++++ YL N+ E+ +++ P RQ PG N++ K F Sbjct: 379 LPAMKRNRNYLASKNM------------EQTGFSNGLPE---VRQKPGDNNSLGRVKFLF 423 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 + + Y HDTP LF R + GC+R+ L +LL W++ I + + + Sbjct: 424 PNSYDIYFHDTPAKSLFAQEKRAFSHGCIRLSQPAALAEYLLDGKSGWTKEKIAKAMSGK 483 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 K V L++ VPV Y + W +D ++ FRDD+YG D Sbjct: 484 KEVWVALSSPVPVFITYFTCWVDEDGLLNFRDDVYGHD 521 >gi|90022535|ref|YP_528362.1| hypothetical protein Sde_2893 [Saccharophagus degradans 2-40] gi|89952135|gb|ABD82150.1| Peptidoglycan-binding domain 1 [Saccharophagus degradans 2-40] Length = 563 Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 113/335 (33%), Positives = 175/335 (52%), Gaps = 9/335 (2%) Query: 94 WPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 W L + P + G + + + ERL GDL S+ ++ + AV FQ RHGL+ Sbjct: 231 WEPLALSPAIKKGMADTRLSPIAERLRFWGDLSESEETFTHYEGELMEAVTRFQRRHGLE 290 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 P G+V +TL A+NV R + VNL R + L+Q MG +++VNI L ++ + Sbjct: 291 PDGVVGKNTLLALNVSPVQRANDVVVNLERWR-WLDQNMGDYFIVVNIANFDLRVYKSNE 349 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 + ++ VIVGR R+TP+ +I ++FNP W +P+ + +D + +++D YL+ Sbjct: 350 LVMQKPVIVGRNYRKTPVFSDKIRFLVFNPTWTVPQKLAVQDKLPEIKKDISYLEKYGFT 409 Query: 273 MIDEKGKEVFVE--EVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 + G+ V +V+W+ F +R Q PG +NA+ K F + + Y+HDTP Sbjct: 410 LY-ALGENTVVNPADVEWDKLH-KRFPYRMVQAPGPLNALGQVKFMFPNAYDVYLHDTPS 467 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF+ R +SGC+RV + I+L LL+ I EV+ + KTT V L T VPV Sbjct: 468 RELFSKTERAFSSGCIRVSDPIELASKLLEPNGM-GIDQINEVLSSAKTTTVNLKTPVPV 526 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 H Y +AW +QFR+DIY D + LP Sbjct: 527 HIEYWTAWVDSSGKLQFRNDIYERDKPLFSALTLP 561 >gi|255035938|ref|YP_003086559.1| ErfK/YbiS/YcfS/YnhG family protein [Dyadobacter fermentans DSM 18053] gi|254948694|gb|ACT93394.1| ErfK/YbiS/YcfS/YnhG family protein [Dyadobacter fermentans DSM 18053] Length = 540 Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 101/311 (32%), Positives = 159/311 (51%), Gaps = 24/311 (7%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + L+ RL + GDL P + FD + +AVK FQ R G +G+ + + Sbjct: 231 GDRDTLITALKTRLHLLGDL-PEPDSTPVFDTTLTAAVKHFQQRVGQKQTGVTGPAFFKE 289 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 +NVPV RIRQ+ +N+ RI+ + Y+LVNIP +L A E+GK+ V+VG Sbjct: 290 LNVPVTARIRQMLINMERIR-WMPAAPPTDYILVNIPEFTLHAYEDGKLSFDMVVVVGSE 348 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 T I +N+++F+PYW +P SI++K+++ ++++P YL +N+ Sbjct: 349 ANSTVIFSGTLNQVVFSPYWNVPTSILKKEVLPGIKKNPNYLARHNM------------- 395 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 +WN RQ PGK N++ K F + + Y HDTP LF R + GC+ Sbjct: 396 --EWNGGS-----VRQKPGKSNSLGLVKFLFPNSYSIYFHDTPSKSLFKESQRAFSHGCI 448 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL--ATEVPVHFVYISAWSPKDSI 402 R+ + WLL+ TW+ I + + K V+L EVPV Y ++W + Sbjct: 449 RLAEPKKMAEWLLRRDSTWTSEKITAAMNSGKEKYVRLRGKNEVPVFIGYFTSWVDQHGN 508 Query: 403 IQFRDDIYGLD 413 +QFR D+YG D Sbjct: 509 LQFRKDVYGHD 519 >gi|114570411|ref|YP_757091.1| peptidoglycan binding domain-containing protein [Maricaulis maris MCS10] gi|114340873|gb|ABI66153.1| Peptidoglycan-binding domain 1 protein [Maricaulis maris MCS10] Length = 539 Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 106/324 (32%), Positives = 166/324 (51%), Gaps = 6/324 (1%) Query: 94 WPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 WP + P L G+ V +LR RL G LD +D +E+AV+ +Q R L Sbjct: 186 WPGVQSGPSLSAGDVGGRVDQLRTRLTAEGLLDGDWQEGDHYDIRLETAVRRYQGRTNLA 245 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 PSG +D +TL +N+P D RI QL NL + ++ + +G R++ VN+ LEA E+G+ Sbjct: 246 PSGRMDQATLRQLNLPPDRRIGQLMANLEQ-RRWRTRDLGRRHIWVNLADFRLEAWEDGQ 304 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 + V+VGR TP + I+ NP+W +P + + R++P ++ Sbjct: 305 LAREHEVMVGRQASSTPEFSEDMQYIVLNPWWGLPNGSARPRFQSF-RRNPSLARELGFR 363 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 + + G+ + V E+DW S ++ +R Q PG N M K F +RNN Y+HDT E Sbjct: 364 IYNRSGEAISVYEIDW-SRWGGDWPYRMSQPPGATNPMGEVKFIFPNRNNIYIHDTTERD 422 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 F R ++GC+RV++ + L W+L WSR I+EVV T V L +PVH Sbjct: 423 QFVRTRRDFSAGCIRVQDPLALAQWVLDGQDGWSRARIDEVVAGSSPTVVWLDDRIPVHI 482 Query: 391 VYISAWSPKDSIIQFRDDIYGLDN 414 Y + D +++ +D+Y D+ Sbjct: 483 AYWTVVGDPDGRVRYLNDLYRRDS 506 >gi|89068811|ref|ZP_01156194.1| hypothetical protein OG2516_03630 [Oceanicola granulosus HTCC2516] gi|89045581|gb|EAR51644.1| hypothetical protein OG2516_03630 [Oceanicola granulosus HTCC2516] Length = 550 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 111/336 (33%), Positives = 178/336 (52%), Gaps = 14/336 (4%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 Q L+ GG+ L G + V LR+RL G L PS +S+ FDA +E+AV+ F Sbjct: 204 QRQLNAGGYGPTVSASLERGATGEQVVALRDRLTAMGFLAPS--VSMEFDAALEAAVRRF 261 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 Q+ GL G+V +TL+A+NVP++ R+R + V + R + + + G R++ VN+ + Sbjct: 262 QVSVGLTADGVVGGATLDAINVPLEERLRMVLVAMERERWMNNLERGQRHIWVNLVDYTA 321 Query: 206 EAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 V+ G V R+ ++G DRQTP ++ ++ NP W +PRSI + + LR++ Sbjct: 322 AVVDEGHVTFRTKSVIGAGDADRQTPEFSDVMDHMVINPSWYVPRSITVNEYLPSLRRNR 381 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNT 321 + +++ +ID G+ V V+++ F + RQ PG NA+ K F +R N Sbjct: 382 NAV--SHLQVIDRNGRVVNRNSVNFSQYNARTFPYSMRQPPGSSNALGQVKFMFPNRYNI 439 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL---KDTPTWSRYHIEEVVKTRKTT 378 Y+HDTP LF+ VR + GC+R+ + + LL +D P + + + T Sbjct: 440 YLHDTPSQHLFSETVRTFSHGCIRLDDPYEFAHALLAAQEDDPVG---FFQTRLDSGNET 496 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 V L T VPVH VY +A++ D ++ FR D YG D Sbjct: 497 RVNLETPVPVHLVYRTAFTTADGVVNFRPDAYGRDG 532 >gi|146300086|ref|YP_001194677.1| hypothetical protein Fjoh_2331 [Flavobacterium johnsoniae UW101] gi|146154504|gb|ABQ05358.1| Uncharacterized protein [Flavobacterium johnsoniae UW101] Length = 519 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 99/334 (29%), Positives = 177/334 (52%), Gaps = 26/334 (7%) Query: 85 YQDILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 Y+ + W E P + L S ++ ++R RL + GDL S +D + Sbjct: 195 YKKLEKSSKWKPIVAETPYKDLRPDAVSPTIAQVRTRLYLLGDL-KQDSKSDFYDRELMD 253 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL-RYVLVN 199 V +++R+G P+ ++ ++ MN+PV +++ L +N+ RI+ + + + YVLVN Sbjct: 254 GVMKYKVRNGFKPNYILAEEHIKEMNIPVSDKVKTLMLNMERIRAISPELVNNDEYVLVN 313 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 +P+ L V+NGK+ L S+V VG +T I + +I+RI+F+PYW +P+SI+Q ++ + + Sbjct: 314 VPSYELIYVKNGKIELTSSVFVGSPLTKTTIFNGQIDRIVFSPYWTVPQSIVQNELRSKI 373 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 DP YL + N+ M+ N RQ PG N++ K F + + Sbjct: 374 AADPNYLAEKNMEMV--------------------NGQVRQKPGPDNSLGLVKFMFPNSD 413 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 + YMHDTP LF+ R + GC+ V+ +L V +LKD P W++ I++ ++ + + Sbjct: 414 DIYMHDTPSKTLFDFEKRTFSHGCINVKMAKELAVAMLKDYPEWTQAKIDKAMEGKVESS 473 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 KL+ +VP++ Y ++ ++ I F D+Y D Sbjct: 474 FKLSKKVPIYITYFTSLVNENGQIGFFQDVYEKD 507 >gi|126726524|ref|ZP_01742365.1| peptidoglycan binding protein, putative [Rhodobacterales bacterium HTCC2150] gi|126704387|gb|EBA03479.1| peptidoglycan binding protein, putative [Rhodobacterales bacterium HTCC2150] Length = 535 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 103/326 (31%), Positives = 171/326 (52%), Gaps = 10/326 (3%) Query: 93 GW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 GW P + + L G S V LR R+I G L K S +D + A++LFQ +GL Sbjct: 196 GWGPTVRAKSLKPGQSGAEVVALRNRMIRMGYL--RKSASQKYDTNLTKAIQLFQQDNGL 253 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 P G+ + T++ +NV + R++Q+ V + R ++ L +G R+V VN+ + NG Sbjct: 254 LPDGVSGADTIKVVNVSANTRLQQVIVAMER-RRWLNIDLGKRHVFVNLADFRASIINNG 312 Query: 212 KVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 KV + +VG+ DR+TP + ++ NP W +PRSI K+ + +L+++P + + Sbjct: 313 KVEFSTRAVVGKNISDRRTPEFSDVMTHMIINPTWHVPRSIAVKEYLPMLKKNPGAV--S 370 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTP 327 ++ M+D G+ V VD+ + +F F +Q P NA+ K F +++N Y+HDTP Sbjct: 371 HLRMVDASGRTVSRTNVDFTAYTTKSFPFNLKQPPSNGNALGRVKFMFPNKHNIYLHDTP 430 Query: 328 EPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVP 387 LF VR + GC+R+ + D LL + + + + +KT+ T L + + Sbjct: 431 AKSLFARNVRAYSHGCIRLADPFDFAYALLSKEMSNGKDYFQRTLKTKVETQYTLKSSLK 490 Query: 388 VHFVYISAWSPKDSIIQFRDDIYGLD 413 VH Y +AW P + +R DIYG D Sbjct: 491 VHIDYRTAWVPAKGRVNYRRDIYGRD 516 >gi|311747884|ref|ZP_07721669.1| putative peptidoglycan binding protein [Algoriphagus sp. PR1] gi|126575878|gb|EAZ80188.1| putative peptidoglycan binding protein [Algoriphagus sp. PR1] Length = 548 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 100/323 (30%), Positives = 172/323 (53%), Gaps = 3/323 (0%) Query: 93 GWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDP-SKGLSVAFDAYVESAVKLFQMRHG 150 W ++ I + +H+G+S+ + RLRERLI L+ + +D+ + +K FQ HG Sbjct: 218 NWKKVKISKSIHVGDSNSDIPRLRERLIYWELLEEYAVQDEKVYDSIMMDGIKDFQGTHG 277 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 LD G++ T +A N R+ + +VN+ R++ L + ++LVN+ L+ ++N Sbjct: 278 LDIDGVIGPQTAQAFNDSPKDRLNKARVNMERLRWLPDTVKNAEFILVNLANFQLDYLKN 337 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 + VIVGR ++PI + ++ I+F+PYW IP SI +++ +R++P Y+ N Sbjct: 338 LDTLISERVIVGRKYHESPIFMAEMSYIVFSPYWNIPYSITHSEIIPSVRKNPNYIAAKN 397 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 + ++ GK + ++WNS P ++ RQ PG N++ K F +++N Y+HDT Sbjct: 398 MEVVTSSGKVLDPSTINWNSKSFP-YMVRQKPGPGNSLGLVKFMFPNKHNVYIHDTNARS 456 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 LF R + GC+R++N D LL P W+ I+E + V+L +PV Sbjct: 457 LFALDDRARSHGCIRIQNPQDFAKELLSYDPYWTSEKIDEAMHQTHEKVVQLDRHIPVVL 516 Query: 391 VYISAWSPKDSIIQFRDDIYGLD 413 VY++ W+ FR+DIY D Sbjct: 517 VYLTFWADSKGEAHFREDIYERD 539 >gi|53804877|ref|YP_113480.1| hypothetical protein MCA1003 [Methylococcus capsulatus str. Bath] gi|53758638|gb|AAU92929.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath] Length = 554 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 122/368 (33%), Positives = 188/368 (51%), Gaps = 23/368 (6%) Query: 62 GIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLII 120 G++S +P+ + A+ Y+ + L + P L G+ V LR+RL Sbjct: 183 GLESKLPLYR-----NLKAALPRYRGLAENNDVSALALPPKLSPGDRHGEVPALRKRLAA 237 Query: 121 SGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 G L SK V VE AV FQ RHGL P G++ TL A+NVP R+RQ++ Sbjct: 238 LGFLWQESSSKEPEVYAGDLVE-AVARFQERHGLAPDGVIGKGTLAALNVPPAARLRQIR 296 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAV----ENGKVGLRSTVIVGRVD--RQTPIL 231 + L R++ L E+ G ++LVNIP+ L E +V + V+VGR TP+ Sbjct: 297 LGLERLRWLPERFEG-PFILVNIPSFRLYGYGQDPERPEVSM--NVVVGRSSGGHNTPVF 353 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP 291 HS + ++F PYW +PR+I K+M+ + +DP YL +N+ ++ G V E S Sbjct: 354 HSDMTYVVFRPYWNLPRAITVKEMLPGILRDPGYLARHNLELVPSFGNGSQVYEPSLESL 413 Query: 292 E---PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 E + RQ PG NA+ K F + +N Y+H TP LF R + GC+RV++ Sbjct: 414 EMLSAGSLKLRQRPGPKNALGLVKFAFPNNDNIYLHGTPSVNLFQRARRDFSHGCIRVQD 473 Query: 349 IIDLDVWLLK-DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 + L ++LK + TW++ IEE + ++ V L +PV+ Y + + D ++F + Sbjct: 474 PVGLAEFVLKREGETWTQERIEEAMNGAQSRTVTLKQPLPVYIYYSTVLAEPDGTVRFFE 533 Query: 408 DIYGLDNV 415 DIYGLD V Sbjct: 534 DIYGLDRV 541 >gi|304411335|ref|ZP_07392949.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS183] gi|307305343|ref|ZP_07585091.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica BA175] gi|304350190|gb|EFM14594.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS183] gi|306911646|gb|EFN42071.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica BA175] Length = 521 Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 105/328 (32%), Positives = 169/328 (51%), Gaps = 15/328 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G S + + +RL + GDL + + + VK FQ RHGL G++ T Sbjct: 194 LTVGMSHPLLDTIAKRLWLLGDLAIEPKTNFVYSEELVVGVKRFQQRHGLKQDGVIGKQT 253 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 L +N R L N +R +++ E+K+ Y+L+N+PA + V+NG L S VIV Sbjct: 254 LYWLNQSPKARAVLLAKNTIR-QRVFERKLEPSYLLINVPAFEMILVDNGTTVLNSKVIV 312 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 G+ RQTP+L S+I+ ++ NP W +P SI+++D++ +R++ YL + + D G+ V Sbjct: 313 GKSSRQTPLLDSQISSVVLNPSWRVPSSILRRDILPQIRRNGHYLNERQFDVYDYNGQLV 372 Query: 282 FVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 +W +F ++ Q PG NA+ K F + + Y+H T EP LFN R Sbjct: 373 QHMPEEWQDLASTSFPYQLVQRPGAKNALGKYKFHFDNSFSVYLHGTSEPSLFNKDDRAL 432 Query: 340 TSGCVRVRNIIDLDVW----LLKDTPTWSRYHIEEVVKTRKTTP--VKLATEVPVHFVYI 393 +SGC+R+ + +L W L+KD W + + T P L+ ++PVH VY+ Sbjct: 433 SSGCIRIEKVTELAQWFKEHLVKDKRLWDK------LAPDVTEPQWFSLSQKLPVHLVYL 486 Query: 394 SAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 +AW Q+R DIY L+ +P Sbjct: 487 TAWLDDSGQEQYRSDIYHLEAELTNAVP 514 >gi|167624266|ref|YP_001674560.1| peptidoglycan-binding domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167354288|gb|ABZ76901.1| Peptidoglycan-binding domain 1 protein [Shewanella halifaxensis HAW-EB4] Length = 464 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 103/316 (32%), Positives = 161/316 (50%), Gaps = 15/316 (4%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 S+ + +RL + GD + S S D + SA+K FQ RHGL P ++ T++ +NV Sbjct: 144 SIPTIAKRLWLLGDAERSATTSTLLDEKLSSALKRFQRRHGLQPDAIIGPETMKWLNVQP 203 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 R R L N + + + Q+ G +++++NIPA + G+V L S VIVG+ R TP Sbjct: 204 IERARMLANNFVLKAEFMAQR-GDQFLVINIPAFEMALFSKGRVELESRVIVGKPYRPTP 262 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 +L I+ ++ NP W +P+ I+ D++ +R+D Y+ + N + D V W+ Sbjct: 263 LLSGAISNVVINPSWRVPKKILYNDLLPHVRKDGNYIAEGNFDVFDRSNNLVVRTAQQWS 322 Query: 290 ----SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 P P F+ Q PG N + K F + + ++HDT P LF R +SGC+R Sbjct: 323 DLARGPFPYRFV--QRPGYNNTLGRYKFYFPNDFSIFLHDTSNPKLFERSNRALSSGCIR 380 Query: 346 VRNIIDLDVW----LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 V N+ L W L+KD TW H E +T L + + VH VY +AW + + Sbjct: 381 VENVEGLANWMAANLVKDKQTWVDRHAERT----RTQWFALNSTLNVHLVYWTAWIDEHN 436 Query: 402 IIQFRDDIYGLDNVHV 417 QFR+DIY L ++ Sbjct: 437 QAQFRNDIYQLQTLNT 452 >gi|269139502|ref|YP_003296203.1| hypothetical protein ETAE_2157 [Edwardsiella tarda EIB202] gi|267985163|gb|ACY84992.1| hypothetical protein ETAE_2157 [Edwardsiella tarda EIB202] gi|304559391|gb|ADM42055.1| L,D-transpeptidase YcbB [Edwardsiella tarda FL6-60] Length = 544 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 109/329 (33%), Positives = 170/329 (51%), Gaps = 10/329 (3%) Query: 94 WPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRHGL 151 WP++P P L G+SS ++ LR L+ SG L ++ G + + +AVK FQ GL Sbjct: 202 WPQMPSGPTLRSGDSSPAIATLRAILLRSGALSTAEAGDGDVYTPALVAAVKRFQSGQGL 261 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 P G++ T +NV +R L +N+ R++ LL + ++VNIP S+ +G Sbjct: 262 TPDGVIGPRTYAWLNVTPSMRAALLALNIQRLR-LLPASVHTG-IMVNIPNYSMTYYRDG 319 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 K L S VIVGR R+TP+++S +N ++ NP W +P ++++D++ +DP Y + + Sbjct: 320 KDVLSSRVIVGRPARKTPLMNSELNNVVVNPPWNVPTKLVREDIVPKAMRDPGYFERHGY 379 Query: 272 HMIDEKGKEVFVEE---VDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDT 326 ++ +V V +DWNS NF + RQ PG N++ K S++ Y+HDT Sbjct: 380 TLLSGWSGDVQVINPYMIDWNSVSARNFPYRVRQAPGASNSLGRFKFNMPSQDAIYLHDT 439 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P LFN +R +SGCVR+ L LL D WS + ++ T V + + Sbjct: 440 PNHALFNQDIRALSSGCVRINKASTLADMLLADA-GWSPERVASALQAGNTQYVPIRQRI 498 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 PV Y +AW QFR DIY D + Sbjct: 499 PVRLYYQTAWVSDGGEPQFRTDIYNYDQL 527 >gi|157961780|ref|YP_001501814.1| peptidoglycan-binding domain-containing protein [Shewanella pealeana ATCC 700345] gi|157846780|gb|ABV87279.1| Peptidoglycan-binding domain 1 protein [Shewanella pealeana ATCC 700345] Length = 451 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 105/320 (32%), Positives = 166/320 (51%), Gaps = 14/320 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 IRP G S+ + + RL + GD + S + + A+K FQ+RHGL ++ Sbjct: 136 IRP---GESNPIIPDVVRRLWLLGDASSAATGSNELNLPIVDALKRFQLRHGLKADAIIG 192 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 TL+ +NVP + R L N ++ + + Q+ R++++NIPA +E ++G++ L S Sbjct: 193 PETLKWLNVPPEQRASILAKNFIQRAEFMAQRDD-RFLVINIPAFEMELFDHGELELASR 251 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 VIVG+ R TPIL S I+ ++ NP W +P+ I+ D++ +R+D Y+ N + D Sbjct: 252 VIVGKPYRPTPILSSSISNVVINPSWRVPKKIMYNDLLPQVRKDGNYISQRNFDVFDRNN 311 Query: 279 KEVFVEEVDWN--SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 V W+ + P F F Q PG N + K F + + Y+HDT +P LF Sbjct: 312 NLVMRTAEQWSDLAKGPFPFRFVQRPGTNNTLGRYKFYFPNDFSVYLHDTSDPKLFQRSN 371 Query: 337 RFETSGCVRVRNIIDLDVW----LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 R +SGC+R+ N+ L W L+KD TW H + ++T L + + VH VY Sbjct: 372 RALSSGCIRIENVQGLANWMAANLVKDKQTWVDRHADR----KRTQWFALKSSLNVHLVY 427 Query: 393 ISAWSPKDSIIQFRDDIYGL 412 +AW + Q+RDDIY L Sbjct: 428 WTAWIDGSNQAQYRDDIYQL 447 >gi|260753690|ref|YP_003226583.1| ErfK/YbiS/YcfS/YnhG family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553053|gb|ACV75999.1| ErfK/YbiS/YcfS/YnhG family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 502 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 104/341 (30%), Positives = 170/341 (49%), Gaps = 18/341 (5%) Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A + + +Y+ I +GGWP +P L +G+ + V+ LR RL I P G S F Sbjct: 160 AGLKNGLIYYRAIAEKGGWPVVPTGADLTVGSDNPRVKTLRRRLAIEDKELPDNG-SSHF 218 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 DA +++AVK Q R+GL+P+G+V TL+A+N PV RI Q+ N+ R + L + + Sbjct: 219 DAALKAAVKRAQQRYGLNPTGVVSGQTLQALNQPVKSRIHQIMANMERWR-WLPRNLPEN 277 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 + VN+ AA L E + + + GR +TP+L S I ++ NP W +P SI +K+ Sbjct: 278 RIQVNVAAAVLTLFEKNQPVMSMKSVTGRPGNETPMLRSTIYSLVINPPWNVPDSIAKKE 337 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + P YL+ +I E G+ ++ Q PG N++ K + Sbjct: 338 LWPKEKAHPGYLQAAGFKIIGESGQGQRLQ---------------QKPGPRNSLGQLKFD 382 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 F + + Y+HDTP F+ R E+ GC+R+ + + L LL P W+ + + Sbjct: 383 FPNSYSVYLHDTPGRGAFSRYGRLESHGCIRLEHPVALGERLLAADPAWTGDRLRSEIDK 442 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 +T V+L V V Y +A+ ++ + FR D Y D + Sbjct: 443 NETERVRLKQPVAVFLFYWTAFGNGENALSFRSDPYKWDEL 483 >gi|224369240|ref|YP_002603404.1| hypothetical protein HRM2_21420 [Desulfobacterium autotrophicum HRM2] gi|223691957|gb|ACN15240.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 549 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 110/353 (31%), Positives = 175/353 (49%), Gaps = 28/353 (7%) Query: 80 KAIAFYQDILSRGGWPELP----IRPLHLGNSSVSVQRLRERLI--------ISGDLDPS 127 K + Y + G W +L IRP G+ + +R+R+ IS +PS Sbjct: 196 KGLLHYGLLKYSGKWKDLSGTESIRP---GDEDERIVEIRKRIALLENDNKEISKSAEPS 252 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 +D + V LFQ HGL G++ +T++ +N + R+ Q+++N+ R + Sbjct: 253 -----VYDHELLKKVVLFQQTHGLVQDGIIGRNTIQELNKSPEDRVDQIKINMARWR-WQ 306 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + +G +Y+LVNI SL A + G++ VIVG+ QTP+ +I + NPYW +P Sbjct: 307 DHGLGDKYILVNIANYSLYACKTGELKFSMPVIVGKFQHQTPVFSDKIKYLELNPYWNVP 366 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMI---DEKGKEVFVEEVDWNSPEPPN---FIFRQD 301 SI + + LR++P YL + NI + + G E+ ++W P F RQD Sbjct: 367 SSIAVNEDLPGLRKNPSYLVEKNIRLFSNWQKDGVEIDSTAINWKRVTPSEMARFKLRQD 426 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL-KDT 360 PG NA+ K F + + Y+HD+P LF+ R + GC+RV L V+LL ++ Sbjct: 427 PGPTNALGRVKFVFPNHYSVYLHDSPAKRLFSEQKRSFSHGCIRVSEPEKLAVFLLDEEG 486 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I +++ K +K+ VPVH Y +AW KD I F D+YG D Sbjct: 487 SEWNIEQIHDLISQGKRKVLKIRLPVPVHITYQTAWVDKDDEILFNGDVYGRD 539 >gi|284007574|emb|CBA73124.1| conserved hypothetical protein [Arsenophonus nasoniae] Length = 563 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 108/335 (32%), Positives = 175/335 (52%), Gaps = 11/335 (3%) Query: 94 WPEL-PIRPLHLGNSSVSVQRLRERLIISGDL--DPSKGLSVAFDAYVESAVKLFQMRHG 150 WP++ + L G +S + L E L +G L D + + + AVK FQ +G Sbjct: 220 WPKINTVSLLKPGQTSNDLVSLSEILTRNGLLTQDADTDNTRHYGGLLVDAVKQFQRMYG 279 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L+P G++ ++TL+ +N R L +N+ R++ + + G +LVNIPA +L N Sbjct: 280 LEPDGIIGNATLKWLNTSPTDRAGLLAINIQRLRIIPNE--GGSGILVNIPAYTLHFYLN 337 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 ++ + S VIVGR DR+TPI+ S +N ++ NP W +P S+++KD++ R+DP Y Sbjct: 338 NQLIIDSKVIVGRPDRKTPIMSSELNSVVINPPWNVPTSMVRKDILPQARRDPGYFARRG 397 Query: 271 IHMIDEKGKEVF---VEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHD 325 ++ + + ++WN+ +F + RQ PG NA+ K S + Y+HD Sbjct: 398 FTVLSGWERNAYPIDPYSINWNAISSSSFPYRVRQAPGPSNALGRYKFNMPSSDAIYLHD 457 Query: 326 TPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATE 385 TP LFN R +SGCVRV L LL +W + I+ ++ +T + + Sbjct: 458 TPNHSLFNRQNRSISSGCVRVNKASVLASILLARA-SWDQKRIDGALQLGETRYINIPGR 516 Query: 386 VPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 +P++ Y +AW +I FRDDIYG DNV G + Sbjct: 517 IPIYLYYQTAWVDNKNIANFRDDIYGYDNVIYGAM 551 >gi|159044168|ref|YP_001532962.1| hypothetical protein Dshi_1619 [Dinoroseobacter shibae DFL 12] gi|157911928|gb|ABV93361.1| hypothetical protein Dshi_1619 [Dinoroseobacter shibae DFL 12] Length = 536 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 112/343 (32%), Positives = 174/343 (50%), Gaps = 10/343 (2%) Query: 76 AQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A+ KA + + GGW P++ L G S V LR+RLI G L + +S + Sbjct: 180 ARLMKAKLEMEKTIGAGGWGPKVTAAALKPGQSGPQVVALRDRLIRMGYL--KRTVSATY 237 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 DA ++ AV+ FQ HGL G+ TL +N R++ + V L R ++ + ++G R Sbjct: 238 DAALQVAVQRFQQDHGLAADGVAAKITLREINTEPTERLKSIIVGLER-ERWMNFELGPR 296 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +++VNIP +ENGK + V+VG+ DR+TP ++ ++ NP W +PRSI Sbjct: 297 HIMVNIPDFHARVMENGKEVFATRVVVGKNTSDRRTPEFSDEMDHMVINPTWNVPRSIAT 356 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAS 310 K+ + L+++P + + ++D G+ V EVD+ +F F +Q P NA+ Sbjct: 357 KEYLPKLQENPN--AHSYMRLVDASGRTVNRAEVDFTQFNARSFPFDIKQPPSNRNALGL 414 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F +++N Y+HDTP LF R + GCVRV + D LL + Sbjct: 415 VKFMFPNKHNIYLHDTPAKSLFGRESRAYSHGCVRVADPFDFAYELLSKQERDPEGFFKT 474 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + K T V L VPVH VY +A++P Q+R D+YG D Sbjct: 475 TLAKGKETWVYLDKPVPVHLVYQTAFAPAKGNTQYRRDVYGRD 517 >gi|254490473|ref|ZP_05103659.1| Putative peptidoglycan binding domain protein [Methylophaga thiooxidans DMS010] gi|224464217|gb|EEF80480.1| Putative peptidoglycan binding domain protein [Methylophaga thiooxydans DMS010] Length = 501 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 115/353 (32%), Positives = 181/353 (51%), Gaps = 22/353 (6%) Query: 77 QTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGL----- 130 Q ++ Y+ RGGW +P PL G+S V LR RLI +PS L Sbjct: 152 QLTHFLSQYRGYQLRGGWQTVPTMPLLRPGDSHQHVPSLRARLITE---NPSLNLIEVEQ 208 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + +D + VK FQ RHGL G+V S T A+N VD I +++VNL R + L Sbjct: 209 TTIYDRQLVETVKQFQARHGLKIDGIVGSETRAALNQSVDDLITKIRVNLERFR-WLPDD 267 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +G RY+LVN+ + L AVE+G++ L VIVG+ R TP +S + ++ NPYW +P + Sbjct: 268 LGKRYLLVNLGSHQLSAVEDGQIKLNMKVIVGKSQRATPSFNSAMTHLVINPYWNVPHKL 327 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGK--------EVFVEEVDWNSPEPPNFIFRQDP 302 ++D++ + +P Y N ++ + + +EV S E P + +Q P Sbjct: 328 ARRDLLPKQQANPDYFFLNEFNLFLRNAEVHTPVDPYRINWDEVSALSSEFP-YRLQQRP 386 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G++NA+ K F + N Y+HDTP+ LF+ R +SGC+RV + + L + L + Sbjct: 387 GELNALGRLKFMFPNPWNIYLHDTPDKALFSENQRNFSSGCIRVEDPLALGQFSLNENNA 446 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 S ++ + + + KL T +PV+ VY + W P ++F D YG D+ Sbjct: 447 QS--WLQSQIDSGQNRGRKLETPLPVYAVYFTIW-PDQGEVRFSPDPYGRDST 496 >gi|160875046|ref|YP_001554362.1| peptidoglycan-binding domain-containing protein [Shewanella baltica OS195] gi|160860568|gb|ABX49102.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS195] gi|315267278|gb|ADT94131.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS678] Length = 521 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 105/328 (32%), Positives = 169/328 (51%), Gaps = 15/328 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G S + + +RL + GDL ++ + + VK FQ RHGL G++ T Sbjct: 194 LTVGMSHPLLDTIAKRLWLLGDLAIEPMTNLVYSEELVVGVKRFQHRHGLKQDGVIGKQT 253 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 L +N R L N +R +++ E+K+ Y+L+N+PA + V+NG L S VIV Sbjct: 254 LYWLNQSPKARAVLLAKNTIR-QRVFERKLEPSYLLINVPAFEMILVDNGTTVLNSKVIV 312 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 G+ RQTP+L S+I+ ++ NP W +P SI+++D++ +R++ YL + + D G+ V Sbjct: 313 GKSSRQTPLLDSQISSVVLNPSWRVPSSILRRDILPQIRRNGHYLNERQFDVYDYNGQLV 372 Query: 282 FVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 +W +F ++ Q PG NA+ K F + + Y+H T EP LFN R Sbjct: 373 QHMPEEWQGLASTSFPYQLVQRPGAKNALGKYKFHFDNSFSVYLHGTSEPSLFNKDDRAL 432 Query: 340 TSGCVRVRNIIDLDVW----LLKDTPTWSRYHIEEVVKTRKTTP--VKLATEVPVHFVYI 393 +SGC+R+ + +L W L+KD W + + T P L+ ++PVH VY Sbjct: 433 SSGCIRIEKVTELAQWFKEHLVKDKRLWDK------LAPDVTEPQWFSLSQKLPVHLVYW 486 Query: 394 SAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 +AW Q+R DIY L+ +P Sbjct: 487 TAWLDDSGQEQYRSDIYHLEAELTNAVP 514 >gi|114047885|ref|YP_738435.1| peptidoglycan binding domain-containing protein [Shewanella sp. MR-7] gi|113889327|gb|ABI43378.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. MR-7] Length = 560 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 107/361 (29%), Positives = 193/361 (53%), Gaps = 20/361 (5%) Query: 77 QTEKAIAFYQDILSRGGWPELP----IRPLHLGNSSVSVQRLRERLIISGDL------DP 126 Q ++ +A Y+D+ +R + +P I+P G++S SVQ + RL G L D Sbjct: 190 QLKQYLAQYKDLAARYPFSPIPYTEVIKP---GSTSPSVQGIATRLTELGYLAASAPADN 246 Query: 127 SKGLS--VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 S +S + +D+ +E+AV+ FQ H L G++ + T+ A+NVP R+ Q+++NL R Sbjct: 247 SAAVSQPLTYDSTLEAAVRQFQTDHSLKADGVIGAGTMAALNVPYSQRVEQIRINLER-A 305 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + L + Y++VN+ L ++ + R+ +I+G+++ +TP+ S++ ++ NP W Sbjct: 306 RWLSANLRANYLIVNLAGYELLLFKDNSLSWRTDIIIGKINAKTPLFKSKLKYVVVNPTW 365 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF--IFRQDP 302 +PRSI +++ LR+DP YL+ + +++ G V +DW+S NF F Q+P Sbjct: 366 TVPRSI-STEIINHLRKDPDYLQKKHFKVVEGSGTPVDASGIDWHSMTRKNFPYWFVQEP 424 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G+ N++ K F ++ + Y+HDTP LF R + GC+RV++ + L LL Sbjct: 425 GEDNSLGVVKFIFPNQYSIYLHDTPAKSLFEQTDRAFSHGCIRVKDPLVLADKLLSANAN 484 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 WS + + KT + L + + +Y + + KD I+F +D+Y D V + + Sbjct: 485 WSSNTLSSKLSEGKTENLFLDEPLDILIMYWTV-TLKDGKIKFYNDVYKRDPVLIEALNR 543 Query: 423 P 423 P Sbjct: 544 P 544 >gi|241762099|ref|ZP_04760182.1| Peptidoglycan-binding domain 1 protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373349|gb|EER62949.1| Peptidoglycan-binding domain 1 protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 502 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 103/341 (30%), Positives = 170/341 (49%), Gaps = 18/341 (5%) Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A + + +Y+ I +GGWP +P L +G+ + V+ LR R+ I P G S F Sbjct: 160 AGLKNGLIYYRAIAEKGGWPVVPTGADLTVGSDNPRVKTLRRRIAIEDKELPDNG-SSHF 218 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 DA +++AVK Q R+GL+P+G+V TL+A+N PV RI Q+ N+ R + L + + Sbjct: 219 DAALKAAVKRAQQRYGLNPTGVVSGQTLQALNQPVKSRIHQIMANMERWR-WLPRNLPEN 277 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 + VN+ AA L E + + + GR +TP+L S I ++ NP W +P SI +K+ Sbjct: 278 RIQVNVAAAVLTLFEKNQPVMSMKSVTGRPGNETPMLRSTIYSLVINPPWNVPDSIAKKE 337 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + P YL+ +I E G+ ++ Q PG N++ K + Sbjct: 338 LWPKEKAHPGYLQAAGFKIIGESGQGQRLQ---------------QKPGPRNSLGQLKFD 382 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 F + + Y+HDTP F+ R E+ GC+R+ + + L LL P W+ + + Sbjct: 383 FPNSYSVYLHDTPGRGAFSRYGRLESHGCIRLEHPVALGERLLAADPAWTGDRLRSEIDK 442 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 +T V+L V V Y +A+ ++ + FR D Y D + Sbjct: 443 NETERVRLKQPVAVFLFYWTAFGNGENALSFRSDPYKWDEL 483 >gi|46202780|ref|ZP_00052619.2| COG2989: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 465 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 100/278 (35%), Positives = 147/278 (52%), Gaps = 9/278 (3%) Query: 79 EKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 EKA A I + GGWP +P L G++ V LR RLI SGDL +DA Sbjct: 170 EKARA----IAAAGGWPSIPDGAKLVPGDTDDRVPVLRRRLIASGDLGDGLAEGRTYDAP 225 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + AVK FQ+RHGL+P + TL +NVP D R RQ+ VN+ R + + G ++ Sbjct: 226 LAEAVKRFQLRHGLEPDATIGGKTLAHLNVPADARARQIAVNMERWR-WMPHSFGRHHIA 284 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VNI A +E VE+G V + V+VG V TP + + ++ ++ NP W +P SI K+++ Sbjct: 285 VNIAAQQMEVVEDGAVAMSMRVVVGDVKHPTPSMSTTMSSVVLNPAWRVPTSIANKEILP 344 Query: 258 LLRQDPQYLKDNNIHMID--EKGKEVFVEEVDWNS-PEPPNFIFRQDPGKINAMASTKIE 314 LR+DP YL + + ++D E E + VDWN+ + + RQ PG NA+ K Sbjct: 345 KLRKDPNYLTSSKLQIVDYPEGSPESAGDGVDWNAIGKKFPYRLRQPPGPDNALGQLKFN 404 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 ++ YMHDT + R + GCVR+ ++L Sbjct: 405 LTDSDDIYMHDTNNRRVXGRSYRALSHGCVRLERPVEL 442 >gi|291326407|ref|ZP_06124362.2| putative peptidoglycan binding domain protein [Providencia rettgeri DSM 1131] gi|291314414|gb|EFE54867.1| putative peptidoglycan binding domain protein [Providencia rettgeri DSM 1131] Length = 583 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 103/294 (35%), Positives = 154/294 (52%), Gaps = 8/294 (2%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ +S +D + AVK FQ+++GL+ G+V T +N+ + + +N+ R++ Sbjct: 276 PASTVSKVYDQELVDAVKKFQLQYGLEADGVVGKGTRVWLNMQPKQKAGLMALNIQRLR- 334 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 ++ G +LVNIP SL+ N +V L S VIVGR DR+TPI+ S +N ++ NP W Sbjct: 335 IIPASSGTG-ILVNIPGYSLDFYLNDEVILDSKVIVGRADRKTPIMSSALNNVVINPPWS 393 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEPPNFIF--RQ 300 +P S+ +KD+ +QDP Y + G E+ +DW++ P NF + RQ Sbjct: 394 VPTSMARKDIAPKGKQDPSYFSRKGYTVYSGWGADSYEINPYAIDWDNITPANFPYRIRQ 453 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S + Y+HDTP LFN R +SGCVRV +L LL D Sbjct: 454 APGPTNSLGRYKFNMPSSDAIYLHDTPNHSLFNRNARAISSGCVRVNKASELASILLGDA 513 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 W + I+ +K T V + +PV Y +AW KD Q+R DIY DN Sbjct: 514 -GWEQKRIDGALKEGSTRYVNIPDRIPVFLYYQTAWVDKDQQPQYRADIYQYDN 566 >gi|183598377|ref|ZP_02959870.1| hypothetical protein PROSTU_01769 [Providencia stuartii ATCC 25827] gi|188020553|gb|EDU58593.1| hypothetical protein PROSTU_01769 [Providencia stuartii ATCC 25827] Length = 575 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 116/339 (34%), Positives = 164/339 (48%), Gaps = 28/339 (8%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE-------------------S 140 + L G SS V LRE L G LD + ++ DA Sbjct: 224 KTLKPGQSSDDVIALREILYRQGLLDET-AINTELDAAAPDAEIAKATAQARLYSDELVE 282 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ R+GL+ GMV T +N+ + + +N+ R++ + E +LVNI Sbjct: 283 AVKKFQQRYGLEADGMVGKGTKVWLNMKPQQKAGLMALNIQRLRIIPENNG--TGILVNI 340 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PA SL N +V L S VIVGR DR+TPI+ S +N ++ NP W +P S+ +KD+ + Sbjct: 341 PAFSLNFFLNDEVILDSKVIVGRPDRKTPIMSSALNNVVINPPWSVPTSMARKDIAPRGK 400 Query: 261 QDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF--RQDPGKINAMASTKIEF 315 QDP Y + G++ F ++W+ P NF + RQ PG N++ K Sbjct: 401 QDPSYFSRKGYTVYSGWGEDSFEIDPYSINWDVITPANFPYRIRQAPGPTNSLGRYKFNM 460 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 S + Y+HDTP LFN R +SGCVRV +L LL D W + I+ VK Sbjct: 461 PSSDAIYLHDTPNHSLFNRSARAISSGCVRVNKASELASILLGDA-GWEQKRIDGAVKAG 519 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 T V + +PV+ Y +AW K+ Q+R DIY DN Sbjct: 520 STRYVNIPDRIPVYLYYQTAWVDKEQQPQYRADIYQYDN 558 >gi|114562617|ref|YP_750130.1| peptidoglycan binding domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114333910|gb|ABI71292.1| Peptidoglycan-binding domain 1 protein [Shewanella frigidimarina NCIMB 400] Length = 473 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 104/326 (31%), Positives = 166/326 (50%), Gaps = 12/326 (3%) Query: 94 WPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 WP + + L G+ S++++ +RL + GD + + + +VK FQ RHGL Sbjct: 133 WPAITLEGLLRPGDRHPSIKQINQRLWLLGDAYEYLEDEIDYQPALVQSVKRFQSRHGLK 192 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 ++ TL +N R L + + L Q + Y+L+NIPA + V+ + Sbjct: 193 TDAVIGPKTLFWLNQTPQQRASLLAKSFVEKTVYLSQ-LPQPYLLINIPAFQMVLVDQNQ 251 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V L S VIVG+ RQTP++ +I+ I+ NP W +PR +++KD++ +R + Y D + Sbjct: 252 VVLASKVIVGKSYRQTPVMTGQISNIVINPTWTVPRQLLRKDILPQVRSNGAYFADRHFD 311 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 + D +G V W F +R Q PG NA+ K F + + Y+HDTP P Sbjct: 312 VFDYEGHRVDKTPQQWQQAATGKFPYRVVQRPGSGNALGRYKFHFNNDQSVYLHDTPTPE 371 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVW----LLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 +F +V R +SGCVR+ + L W L+ D TW+ H++ +T L++ + Sbjct: 372 MFAHVERDISSGCVRIEKVQQLADWFANHLVIDKRTWA--HLQS--NHTQTQWFALSSSL 427 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGL 412 PVH VY AW + + Q+RDDIY L Sbjct: 428 PVHMVYWRAWVDEQHVAQYRDDIYQL 453 >gi|300722551|ref|YP_003711841.1| putative carboxypeptidase [Xenorhabdus nematophila ATCC 19061] gi|297629058|emb|CBJ89643.1| putative carboxypeptidasewith PGDB-like domain [Xenorhabdus nematophila ATCC 19061] Length = 572 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 110/329 (33%), Positives = 167/329 (50%), Gaps = 13/329 (3%) Query: 94 WPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS--VAFDAYVESAVKLFQMRHG 150 W E ++ L LG S+ ++ L + L+ SG LDPS S ++ + +AVK FQ HG Sbjct: 228 WTEFLLKSTLRLGQSNENMAALEKILVRSGVLDPSVTNSDNKVYNKALVAAVKRFQTLHG 287 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKMGLRYVLVNIPAASLEAVE 209 L G++ ST +N +R R + +N+ R++ + + G + VNIP SL+ Sbjct: 288 LAADGVIGQSTKTWLNTAPQIRARIMALNIQRLRIIPGDIPTG---IFVNIPNYSLDYYL 344 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 NGK L S V+VGR R+TPI+ S +N ++ NP W +P S+ +KD+ +DP Y + Sbjct: 345 NGKEVLNSKVVVGRPSRKTPIMSSELNNVVINPPWNVPTSMTRKDIAPRAMRDPGYFRTR 404 Query: 270 NIHMIDEKGKEVFV---EEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMH 324 + + V ++W P NF + RQ PG N++ K + + Y+H Sbjct: 405 GYTVFSSWSNDAKVIDSSSINWGVVTPGNFPYRIRQAPGPTNSLGRFKFNMPNSDAIYLH 464 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP FN +R +SGCVRV +L LL D W + + +KT T V + Sbjct: 465 DTPNQTAFNREMRAISSGCVRVNKAPELADMLLGDA-GWDKSKVNNSLKTWATKYVSIPK 523 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 ++PV Y +AW K I Q+R DIY D Sbjct: 524 KIPVFLYYQTAWVDKKGIPQYRADIYDYD 552 >gi|283856545|ref|YP_163499.2| ErfK/YbiS/YcfS/YnhG family protein [Zymomonas mobilis subsp. mobilis ZM4] gi|283775552|gb|AAV90388.2| ErfK/YbiS/YcfS/YnhG family protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 483 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 103/341 (30%), Positives = 170/341 (49%), Gaps = 18/341 (5%) Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A + + +Y+ I +GGWP +P L +G+ + V+ LR R+ I P G S F Sbjct: 141 AGLKNGLIYYRAIAEKGGWPVVPTGADLTVGSDNPRVKTLRRRIAIEDKELPDNG-SSHF 199 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 DA +++AVK Q R+GL+P+G+V TL+A+N PV RI Q+ N+ R + L + + Sbjct: 200 DAALKAAVKRAQQRYGLNPTGVVSGQTLQALNQPVKSRIHQIMANMERWR-WLPRNLPEN 258 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 + VN+ AA L E + + + GR +TP+L S I ++ NP W +P SI +K+ Sbjct: 259 RIQVNVAAAVLTLFEKNQPVMSMKSVTGRPGNETPMLRSTIYSLVINPPWNVPDSIAKKE 318 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + P YL+ +I E G+ ++ Q PG N++ K + Sbjct: 319 LWPKEKAHPGYLQAAGFKIIGESGQGQRLQ---------------QKPGPRNSLGQLKFD 363 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 F + + Y+HDTP F+ R E+ GC+R+ + + L LL P W+ + + Sbjct: 364 FPNSYSVYLHDTPGRGAFSRYGRLESHGCIRLEHPVALGERLLAADPAWTGDRLRSEIDK 423 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 +T V+L V V Y +A+ ++ + FR D Y D + Sbjct: 424 NETERVRLKQPVAVFLFYWTAFGNGENALSFRSDPYKWDEL 464 >gi|113866566|ref|YP_725055.1| hypothetical protein H16_A0537 [Ralstonia eutropha H16] gi|113525342|emb|CAJ91687.1| Uncharacterized protein conserved in bacteria [Ralstonia eutropha H16] Length = 530 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 110/346 (31%), Positives = 174/346 (50%), Gaps = 12/346 (3%) Query: 80 KAIAFYQDILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 +A+A Y++I + W P LP L G L RL+ GDL + ++ Sbjct: 162 EALARYREIAKQPAWGQPLPPLPASKLTPGQPWAGAAALAARLVALGDLPAGTQVPARYE 221 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 + VK FQ RHGL+ G++ ++TL +N+P+ R+RQ+++ + R++ G R Sbjct: 222 GTLVDGVKAFQSRHGLEADGVIGAATLAQLNLPIASRVRQIELTMERLR--WTPLDGPRM 279 Query: 196 VLVNIPAASLEAVE--NGK--VGLRSTVIVGR-VDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VN+P L A E +GK + L VIVG+ +D +TP+ + I F+PYW IP SI Sbjct: 280 IVVNVPEFMLRAYEIRDGKLDIKLEMKVIVGKALDTRTPLFEEDMRYIEFSPYWNIPPSI 339 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF-VEEVDWNSPEPPNFIFRQDPGKINAMA 309 +++ + LR+DP Y + + GK V + E + + RQ PG +NA+ Sbjct: 340 ARRETVPHLRRDPAYFNRQGLEFVTGDGKAVTTLSEENLEAVLNGRMRIRQRPGPLNALG 399 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F + N Y+H TP P LF R + GC+RV + L ++L D P W+ I Sbjct: 400 DIKFVFPNNENIYLHHTPSPQLFKRGRRDFSHGCIRVEAPVALAQFVLHDMPDWNETRIR 459 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 E + K+ V+L +PV Y + + D + F DIYG D + Sbjct: 460 EAMTRGKSNTVRLQQPLPVVLAYGTVIARADGRVSFLPDIYGHDKL 505 >gi|294636885|ref|ZP_06715215.1| cell wall degradation protein [Edwardsiella tarda ATCC 23685] gi|291089915|gb|EFE22476.1| cell wall degradation protein [Edwardsiella tarda ATCC 23685] Length = 550 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 112/330 (33%), Positives = 168/330 (50%), Gaps = 12/330 (3%) Query: 94 WPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKG-LSVAFDAYVESAVKLFQMRHGL 151 WP+LP P + G+SS ++ LRE L SG L ++ + + +AVK FQ GL Sbjct: 208 WPKLPSGPTIRPGDSSPALPILREILRRSGVLSANQADEGEVYTPALVAAVKRFQRDQGL 267 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKMGLRYVLVNIPAASLEAVEN 210 P G++ T +NV LR L +N+ R++ L + G ++VNIP SL + Sbjct: 268 TPDGVIGPRTYAWLNVTPQLRAALLALNIQRLRILPAAMQTG---IMVNIPNYSLIYYRD 324 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 GK L S VIVGR R+TP+++S +N ++ NP W +P ++++D++ +DP Y + Sbjct: 325 GKDVLASRVIVGRPSRKTPLMNSELNNVVVNPPWNVPTKLVREDIVPKAMRDPGYFDRHG 384 Query: 271 IHMIDEKGKEVFVEE---VDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHD 325 ++ + V +DWNS NF + RQ PG N++ K S++ Y+HD Sbjct: 385 YTLLSGWSSDAQVINPYMIDWNSVSARNFPYRVRQAPGASNSLGRFKFNMPSQDAIYLHD 444 Query: 326 TPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATE 385 TP LFN +R +SGCVRV L LL D WS + ++ T V + Sbjct: 445 TPNHALFNQDIRALSSGCVRVNKASTLADMLLADA-GWSDQRVAAALQAGNTQYVPIRQR 503 Query: 386 VPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 +PV Y +AW D QFR DIY D + Sbjct: 504 IPVRLYYQTAWVDGDGAPQFRTDIYNYDQL 533 >gi|163743284|ref|ZP_02150665.1| peptidoglycan binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161383472|gb|EDQ07860.1| peptidoglycan binding protein, putative [Phaeobacter gallaeciensis 2.10] Length = 544 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 10/327 (3%) Query: 92 GGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GGW P++ + L G+S +V LR RLI G L S +D +E AV+ FQ HG Sbjct: 204 GGWGPQVAAKKLESGDSGPAVIALRNRLIAMGYLPRSAARR--YDGALERAVQAFQSDHG 261 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L G+ TL +N PV R++ + V + R ++ L + G R+VLVN + + ++N Sbjct: 262 LTADGVAGGGTLAEINKPVSARLKSVLVAMER-ERWLTPERGTRHVLVNQTDFTAKIIDN 320 Query: 211 GKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 G+V + ++G+ DR++P + ++ NP W +PRSI+ K+ + LR +P + Sbjct: 321 GEVTFVTRSVIGKDNADRRSPEFSDEMEHMVINPSWYVPRSIVTKEYLPKLRNNPNAV-- 378 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDT 326 +I + D +G++V D++ F F RQ P + NA+ K F ++ N Y+HDT Sbjct: 379 GHIEITDSRGRKVNRATADFSKYTARTFPFAMRQPPSRKNALGLVKFMFPNKYNIYLHDT 438 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P+ LF VR + GC+R+ + LL + ++ + K T V L +V Sbjct: 439 PQKSLFQREVRAFSHGCIRLAQPFEFAYALLARQTENPKDFFHRILNSGKETKVVLDQKV 498 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLD 413 PVH +Y +A+ ++R DIYG D Sbjct: 499 PVHIIYRTAFVTPKGQPEYRRDIYGRD 525 >gi|163736471|ref|ZP_02143890.1| Peptidoglycan-binding domain 1 [Phaeobacter gallaeciensis BS107] gi|161390341|gb|EDQ14691.1| Peptidoglycan-binding domain 1 [Phaeobacter gallaeciensis BS107] Length = 544 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 10/327 (3%) Query: 92 GGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GGW P++ + L G+S +V LR RLI G L S +D +E AV+ FQ HG Sbjct: 204 GGWGPQVAAKKLESGDSGPAVIALRNRLIAMGYLPRSAARR--YDGALERAVQAFQSDHG 261 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L G+ TL +N PV R++ + V + R ++ L + G R+VLVN + + ++N Sbjct: 262 LTADGVAGGGTLAEINKPVSARLKSVLVAMER-ERWLTPERGTRHVLVNQTDFTAKIIDN 320 Query: 211 GKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 G+V + ++G+ DR++P + ++ NP W +PRSI+ K+ + LR +P + Sbjct: 321 GEVTFVTRSVIGKDNADRRSPEFSDEMEHMVINPSWYVPRSIVTKEYLPKLRNNPNAV-- 378 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDT 326 +I + D +G++V D++ F F RQ P + NA+ K F ++ N Y+HDT Sbjct: 379 GHIEITDSRGRKVNRATADFSKYTARTFPFAMRQPPSRKNALGLVKFMFPNKYNIYLHDT 438 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P+ LF VR + GC+R+ + LL + ++ + K T V L +V Sbjct: 439 PQKSLFQREVRAFSHGCIRLAQPFEFAYALLARQTENPKDFFHRILNSGKETKVVLDQKV 498 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLD 413 PVH +Y +A+ ++R DIYG D Sbjct: 499 PVHIIYRTAFVTPKGQPEYRRDIYGRD 525 >gi|126737821|ref|ZP_01753551.1| peptidoglycan binding protein, putative [Roseobacter sp. SK209-2-6] gi|126721214|gb|EBA17918.1| peptidoglycan binding protein, putative [Roseobacter sp. SK209-2-6] Length = 537 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 105/333 (31%), Positives = 171/333 (51%), Gaps = 10/333 (3%) Query: 86 QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + ++ GGW +P L G+ +V LR RLI G L S S +D +E AV+ Sbjct: 191 EQLVEAGGWGTSVPASKLEPGDQGAAVVSLRNRLIKMGFLQRSA--SATYDRNMERAVER 248 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL+ G+ + TL+ +N PV R++ + V + R ++ L + G R+VLVN + Sbjct: 249 FQSEHGLEVDGVAGTGTLKEINRPVQDRLKSVIVAMER-ERWLAPERGERHVLVNQTDFT 307 Query: 205 LEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 V+NG V + ++G+ DR++P + ++ NP W +PRSII K+ + LR + Sbjct: 308 ARIVDNGDVTFETRSVIGKNTHDRRSPEFSDTMEHMVINPSWYVPRSIITKEYLPKLRNN 367 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 P + +I + D +G+ V D++ NF + +Q P NA+ K F ++ N Sbjct: 368 PNAV--GHIQITDSRGRVVNRSTADFSQFTARNFPYAMKQPPSSRNALGLVKFMFPNKYN 425 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP+ LF VR + GC+R+ + LL + ++ + K T V Sbjct: 426 IYLHDTPQKSLFQREVRAFSHGCIRLAQPFEFAYALLARQTEDPKAFFHRILSSGKETKV 485 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +L +VPVH +Y +A+ +FR D+YG D Sbjct: 486 ELEQQVPVHIIYRTAYVSNKGRAEFRRDVYGRD 518 >gi|229591001|ref|YP_002873120.1| hypothetical protein PFLU3558 [Pseudomonas fluorescens SBW25] gi|229362867|emb|CAY49777.1| putative exported protein [Pseudomonas fluorescens SBW25] Length = 532 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 107/317 (33%), Positives = 165/317 (52%), Gaps = 13/317 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G V L RLI G L + D V+ AVK FQ+ H L G++ + T Sbjct: 217 LRPGMEDPRVPELARRLISGGYLATASSGKQYHDELVK-AVKAFQLSHSLQADGVIGAGT 275 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 + +N+ +R QL++NL R + L Q + VLVN+ AA L ++G ++ + V Sbjct: 276 VAELNISPAIRREQLRINLERFR-WLAQDLEPEGVLVNVAAAQLSVYQSGIPVWQTRLQV 334 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 GR +RQTP+L SRI R+ NP W IP +I+++D + +R +P+YL+ N+ ++D +G + Sbjct: 335 GRAERQTPLLKSRITRLTLNPTWTIPPTIMREDKLPAIRLNPEYLRQQNLQVLDAEGHPL 394 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 E++DW P N + RQ+ G N + + F + + Y+HDTP LF R +S Sbjct: 395 APEQIDWARPG--NILLRQEAGPRNPLGKIVMRFPNPYSVYLHDTPSQPLFTKGPRAFSS 452 Query: 342 GCVRVRNIIDLDVWLLKD---TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 GCVRV + LL+D +P R +E++ T T +LAT VPV Y + Sbjct: 453 GCVRVEQPL-----LLRDLLVSPA-ERARTDELLATGVTHEFRLATPVPVLLGYWTVEVD 506 Query: 399 KDSIIQFRDDIYGLDNV 415 + + + DIY D V Sbjct: 507 RQGGLVYAPDIYARDLV 523 >gi|113970655|ref|YP_734448.1| peptidoglycan binding domain-containing protein [Shewanella sp. MR-4] gi|113885339|gb|ABI39391.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. MR-4] Length = 560 Score = 169 bits (429), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 106/361 (29%), Positives = 194/361 (53%), Gaps = 20/361 (5%) Query: 77 QTEKAIAFYQDILSRGGWPELP----IRPLHLGNSSVSVQRLRERLIISGDL------DP 126 Q ++ +A Y+D+++R + +P I+P G++S SVQ + RL G L D Sbjct: 190 QLKQYLAQYKDLVTRYPFSPIPYTEVIKP---GSTSPSVQGIATRLTELGYLAASAPADN 246 Query: 127 SKGLS--VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 S ++ + +D+ +E+AV+ FQ H L G++ + T+ A+NVP R+ Q+++NL R Sbjct: 247 SAAVNQPLTYDSTLEAAVRQFQTDHSLKADGVIGAGTMAALNVPYSQRVEQIRINLER-A 305 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + L + Y++VN+ L ++ + R+ +I+G+++ +TP+ S++ ++ NP W Sbjct: 306 RWLSANLPANYLIVNLAGYELLLFKDNSLSWRTDIIIGKINAKTPLFKSKLKYVVVNPTW 365 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF--IFRQDP 302 +PRSI +++ LR+DP YL+ + +++ G V +DW+S NF F Q+P Sbjct: 366 TVPRSI-STEIINHLRKDPDYLQKKHFKVVEGSGTPVDASGIDWHSMTRKNFPYWFVQEP 424 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G+ N++ K F ++ + Y+HDTP LF R + GC+RV++ + L LL Sbjct: 425 GEDNSLGVVKFIFPNQYSIYLHDTPAKSLFEQTDRAFSHGCIRVKDPLVLADKLLSANAN 484 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 WS + + KT + L + + +Y + + KD I+F +D+Y D V + + Sbjct: 485 WSSNTLSSKLSEGKTENLFLDEPLDILIMYWTV-TLKDGKIKFYNDVYKRDPVLIEALNR 543 Query: 423 P 423 P Sbjct: 544 P 544 >gi|304320160|ref|YP_003853803.1| hypothetical protein PB2503_02927 [Parvularcula bermudensis HTCC2503] gi|303299063|gb|ADM08662.1| hypothetical protein PB2503_02927 [Parvularcula bermudensis HTCC2503] Length = 572 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 114/393 (29%), Positives = 194/393 (49%), Gaps = 20/393 (5%) Query: 22 MGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 M S ++P+H+ ++ + D +++ I IP S + ++ Sbjct: 164 MASSATDRPVHSQLVKSV------------RDAGQGKIERSISPFIP--SNPQYERLQET 209 Query: 82 IAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVE 139 + Y+ I GGW L + P+ G+ + LR RL G LD S D + Sbjct: 210 LKTYRQIEEDGGWEALDVGPIVKPGDRHAVISPLRTRLAKEGFLDRQHDNGSPLLDRPLR 269 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 SA+ Q +HG+D G+ T A+N PV+ +I +L +L R ++L + +G +YV N Sbjct: 270 SALIAAQAQHGIDEDGVFGPETARALNEPVESKIARLADSLYRWRELGD--LGDKYVWAN 327 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IP+ E +N + + I+G+ DR TP +++ I+ NP W +P SI+Q+D + L Sbjct: 328 IPSFRAEGWKNRRKEISMRAIMGQPDRPTPTFSDKVDYIVANPKWYVPSSIMQRDKLPKL 387 Query: 260 RQDPQYLKDNNIHMIDEK-GKEVFVEEVDWNSPE-PPNFIFRQDPGKINAMASTKIEFYS 317 ++DP Y +ID+ G+ V EVDW + + + Q GK NA+ KI F + Sbjct: 388 QRDPGYAARGEYTVIDKTTGEAVSPYEVDWFADDVTARYRLVQGAGKGNALGRIKIIFPN 447 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 + + Y+HDTP LF++ R +SGCVR+ + ++ W+ + IE ++ ++T Sbjct: 448 QYSVYLHDTPTKSLFDHATRAFSSGCVRLEHPQEMAEWIARTNGQEKVDQIEMALRDKET 507 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 V+L+ E+PVH Y++ + F DIY Sbjct: 508 ERVELSAELPVHITYMTVTVDEAGTPTFWRDIY 540 >gi|332187614|ref|ZP_08389350.1| putative peptidoglycan binding domain protein [Sphingomonas sp. S17] gi|332012362|gb|EGI54431.1| putative peptidoglycan binding domain protein [Sphingomonas sp. S17] Length = 510 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 108/335 (32%), Positives = 166/335 (49%), Gaps = 22/335 (6%) Query: 81 AIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA-FDAYV 138 +A Y+ + GGW LP + G+S V +LR+RL + DP+ + A FD + Sbjct: 177 GLARYRAMAEAGGWTALPANASIPYGSSGPLVAQLRKRLAME---DPAVSQTGATFDEPL 233 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 +AV+ Q R+GL+P G V S T+ A+NVPV RIRQ+ N+ R + L Q++ + V V Sbjct: 234 LAAVRRAQRRYGLNPVGTVGSQTIAALNVPVSQRIRQIMANMERWR-WLPQQLEAKRVQV 292 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 NI AA L E L + GR +TP+L S I+ ++ NP W +P SI K++ Sbjct: 293 NIAAAVLTVFEGDNPVLSMKAVTGRPGNETPMLVSSIHSVVLNPPWNVPSSIANKELWPK 352 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR 318 R +P YLK N +ID +++ S A+ K +F + Sbjct: 353 ERANPGYLKRNGFRVIDNGDGSKRLQQSSEKS----------------ALGRFKFDFPND 396 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 Y+HDTP F+ R + GCVR+ +L +LK TP W ++ + + KT Sbjct: 397 FAVYLHDTPAQSGFSKFDRLASHGCVRLEKPAELAGLVLKTTPEWQPAAVDATLASGKTV 456 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + V V+ +Y +A++ D + FR+D YG D Sbjct: 457 RASMDEPVAVYLLYWTAFANSDGQVSFREDPYGWD 491 >gi|254462001|ref|ZP_05075417.1| peptidoglycan-binding domain 1 [Rhodobacterales bacterium HTCC2083] gi|206678590|gb|EDZ43077.1| peptidoglycan-binding domain 1 [Rhodobacteraceae bacterium HTCC2083] Length = 536 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 100/330 (30%), Positives = 174/330 (52%), Gaps = 10/330 (3%) Query: 89 LSRGGWPE-LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 L++GGW + +P + L G + +V LR RL + G L S S +DA ++SA++ FQ+ Sbjct: 193 LAKGGWGQKVPQKSLKPGQTGNAVVILRNRLQVMGYLKRSS--SQTYDAAMQSAMQQFQL 250 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 GL+P G+ T+ +N P++ ++ + V + R ++ + + G R++ VN+ S Sbjct: 251 SRGLNPDGIAGPGTMAEINRPIESHLQAIMVAMER-ERWMNRPRGKRHIWVNLTDFSATI 309 Query: 208 VENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 ++NGK RS ++G+ DR++P + ++ NP W +PRSI K+ + LL+++P Sbjct: 310 IDNGKESFRSRSVIGKNQRDRRSPEFSDVMEFLVVNPTWNVPRSIATKEYLPLLKKNPNA 369 Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYM 323 + ++ ++D +G+ V ++ F F +Q P NA+ K F +R+N Y+ Sbjct: 370 V--GHLRIVDSRGRTVSRSAANFGEYSAKTFPFSIKQPPSNSNALGLVKFMFPNRHNIYL 427 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 HDTP LF+ VR + GC+R+ + LL + + + + T T V L Sbjct: 428 HDTPAKNLFSREVRAYSHGCIRLHQPFEFAYALLAKQTSDPKGFFQSKLSTGTETQVNLN 487 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 VPVH VY +A+ + +R DIYG D Sbjct: 488 APVPVHIVYRTAFVTANGTANYRRDIYGRD 517 >gi|146280663|ref|YP_001170816.1| putative periplasmic protein [Pseudomonas stutzeri A1501] gi|145568868|gb|ABP77974.1| putative periplasmic protein [Pseudomonas stutzeri A1501] Length = 495 Score = 169 bits (427), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 104/319 (32%), Positives = 171/319 (53%), Gaps = 9/319 (2%) Query: 93 GWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W LP P L G LRE L+ P+ L + +D + AV+ FQ++HGL Sbjct: 171 AWRPLPSGPTLRPGMRDERSPLLRELLLAGAGSTPA--LDLRYDDELVEAVRGFQLQHGL 228 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + G+V ++TL A+NV R+ QL++NL R++ + + + + +LV+I A L + Sbjct: 229 EADGVVGAATLVALNVSPASRLDQLRINLERLR-WISRDLEPQSLLVDIAGARLIYFRDS 287 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 ++ VGR RQTP+L SRI+R+ NP W +P +I+++D + L+R+D YL + + Sbjct: 288 CPFWQTRTQVGREARQTPLLKSRISRLTLNPTWTVPPTILKQDKLPLIREDIAYLARHQM 347 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 +ID +G V VDW +P + RQD G N + I F + + Y+HDTP L Sbjct: 348 RVIDAQGNAVDPYAVDWANPR--GILLRQDAGPANPLGQVAIRFANPFSVYLHDTPSKPL 405 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 F R +SGCVRV + + L LL++ R + ++++ +T +LA + P+ Sbjct: 406 FERAARAVSSGCVRVESALQLVDLLLEED---ERDTVARLLQSGETHEYRLARQTPILMA 462 Query: 392 YISAWSPKDSIIQFRDDIY 410 Y +A + + ++R DIY Sbjct: 463 YWTADADDSGLPRYRPDIY 481 >gi|226330682|ref|ZP_03806200.1| hypothetical protein PROPEN_04602 [Proteus penneri ATCC 35198] gi|225201477|gb|EEG83831.1| hypothetical protein PROPEN_04602 [Proteus penneri ATCC 35198] Length = 575 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 106/331 (32%), Positives = 169/331 (51%), Gaps = 14/331 (4%) Query: 94 WPELP-IRPLHLGNSSVSVQRLRE-----RLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 WPE+ L SS V LR+ +LI ++ + + +DA + +AVKLFQ Sbjct: 231 WPEMKGTTSLKPNQSSQEVVPLRQILRNLKLIPELAVNEQEIATTVYDASLVAAVKLFQT 290 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 HGL+P G++ T +N+ R + +N+ R++ L +G + VNIP SL Sbjct: 291 AHGLEPDGIIGRQTRTWLNITPAQRASIMALNIQRLR--LTPAIGDTGIWVNIPDFSLYF 348 Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 N ++ L S VIVGR DR+TPI+ S +N ++ NP W +P S+ +KD++ + DP Y Sbjct: 349 YANNELILDSKVIVGRPDRKTPIMSSALNNVVVNPPWNVPTSMTRKDIVPRGKADPSYFS 408 Query: 268 DNNIHMIDEKGKEVF---VEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTY 322 + G + + ++DW + NF +R Q PG N++ K + + Y Sbjct: 409 RKGYTIYSGWGNDAYPINPYDIDWQNVSANNFPYRIWQAPGPTNSLGRYKFNMPNSDAIY 468 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL 382 +HDTP LF+ +R +SGC+RV +L LL D W + I+ +K T + Sbjct: 469 LHDTPNHSLFSKNMRAISSGCIRVNKASELASILLGDA-GWKQDRIDAALKRGSTQYAPI 527 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +PV+ Y +AW +++ Q+R DIYG D Sbjct: 528 PERIPVYLYYQTAWVAQENAPQYRADIYGYD 558 >gi|146302694|ref|YP_001197285.1| hypothetical protein Fjoh_4967 [Flavobacterium johnsoniae UW101] gi|146157112|gb|ABQ07966.1| hypothetical lipoprotein [Flavobacterium johnsoniae UW101] Length = 523 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 103/340 (30%), Positives = 173/340 (50%), Gaps = 30/340 (8%) Query: 81 AIAFYQDILSRGGWPELPI----RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 A+ Y++I GGW + I + L LG+SS V ++RERL I+ D+ +V D+ Sbjct: 197 ALKRYREIEKNGGWKTIEIDDAYKSLKLGDSSPIVSQIRERLFITQDIKEDNKSAVC-DS 255 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL---LEQKMGL 193 + +K +++ HG P + + +N+PV RI+ + VN+ R + + LE+ G Sbjct: 256 TLIKGLKSYELHHGFAPKNTILPEHITDLNIPVSDRIKTIIVNMERCRWIDPKLEK--GQ 313 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +Y+ VNIP L + + ++ S V+VG+ +T I ++ I+F+PYW +P SII K Sbjct: 314 QYIEVNIPEFKLYLIRDRQIAFTSPVVVGKAMTKTVIFSGTMSNIVFSPYWNVPPSIIAK 373 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 ++ + ++ YL N+ +WN N RQ PGK N++ K Sbjct: 374 EIKPGMAKNKNYLAQKNL---------------EWN-----NGAVRQLPGKNNSLGLVKF 413 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 F + +N Y+HDTP LF R + GCVRV +L + +LK+ P W+ I++ + Sbjct: 414 LFPNSSNIYLHDTPSKSLFERESRAFSHGCVRVAKPRELAIEILKEDPKWTEARIDKAMH 473 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 K + + + PV+ Y +AW ++ + F DIY D Sbjct: 474 AGKESWYTIKKKFPVYIGYFTAWVDREGNLNFYKDIYQRD 513 >gi|86138266|ref|ZP_01056840.1| peptidoglycan binding protein, putative [Roseobacter sp. MED193] gi|85824791|gb|EAQ44992.1| peptidoglycan binding protein, putative [Roseobacter sp. MED193] Length = 541 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 105/333 (31%), Positives = 176/333 (52%), Gaps = 10/333 (3%) Query: 86 QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + + + GGW P +P L G++ +V LR RLI G ++ S + ++D +E AV+ Sbjct: 195 EQLQAAGGWGPTVPGNKLEPGDTGTNVVALRNRLIALGYMERSA--TASYDRDMERAVES 252 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL+ G+ TL+ +N PV R++ + + + R ++ L G R+VLVN + Sbjct: 253 FQADHGLEVDGVAGGGTLKEINRPVRDRLKSVIIAMER-ERWLTPDRGERHVLVNQTDFT 311 Query: 205 LEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + ++NG V + ++G+ DR++P + ++ NP W +PRSII K+ + LR + Sbjct: 312 AKIIDNGDVTFETRSVIGKNQSDRRSPEFSDVMEHLVINPSWHVPRSIITKEYLPQLRNN 371 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 P + ++I + D +G+ V VD++ +F F RQ P NA+ K F +++N Sbjct: 372 PNAV--SHIQITDSRGRVVNRGSVDFSQYTARSFPFAMRQPPSTRNALGLVKFIFPNKHN 429 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP+ LF VR + GC+R+ + LL ++K+ K T V Sbjct: 430 IYLHDTPQKSLFKREVRAFSHGCIRLAQPFEFAYALLAKQTEDPIDFFHRILKSGKETKV 489 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L +VPVH +Y +A+ +FR D+YG D Sbjct: 490 DLEQQVPVHIIYRTAYVSNKGRAEFRRDVYGRD 522 >gi|4378168|gb|AAD19413.1| unknown [Zymomonas mobilis subsp. mobilis ZM4] Length = 473 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 102/341 (29%), Positives = 170/341 (49%), Gaps = 18/341 (5%) Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A + + +Y+ I +GGWP +P L +G+ + V+ LR R+ I P G S F Sbjct: 131 AGLKNGLIYYRAIAEKGGWPVVPTGADLTVGSDNPRVKTLRRRIAIEDKELPDNG-SSHF 189 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 DA +++AVK Q R+GL+P+G+V TL+A+N PV RI Q+ N+ R + L + + Sbjct: 190 DAALKAAVKRAQQRYGLNPTGVVSGQTLQALNQPVKSRIHQIMANMERWR-WLPRNLPEN 248 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 + VN+ AA L E + + + GR +TP+L S I ++ NP W +P SI +K+ Sbjct: 249 RIQVNVAAAVLTLFEKNQPVMSMKSVTGRPGNETPMLRSTIYSLVINPPWNVPDSIAKKE 308 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + P YL+ +I E G+ ++ Q PG N++ K + Sbjct: 309 LWPKEKAHPGYLQAAGFKIIGESGQGQRLQ---------------QKPGPRNSLGQLKFD 353 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 F + + Y+HDTP F+ R E+ GC+R+ + + L LL P W+ + + Sbjct: 354 FPNSYSVYLHDTPGRGAFSRYGRLESHGCIRLEHPVALGERLLAADPAWTGDRLRSEIDK 413 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 +T V+L V V Y +A+ ++ + FR + Y D + Sbjct: 414 NETERVRLKQPVAVFLFYWTAFGNGENALSFRSEPYKWDEL 454 >gi|238920326|ref|YP_002933841.1| peptidoglycan-binding domain 1 protein [Edwardsiella ictaluri 93-146] gi|238869895|gb|ACR69606.1| peptidoglycan-binding domain 1 protein [Edwardsiella ictaluri 93-146] Length = 544 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 109/329 (33%), Positives = 169/329 (51%), Gaps = 10/329 (3%) Query: 94 WPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS-KGLSVAFDAYVESAVKLFQMRHGL 151 WP++P P L G+SS +V LRE L+ SG L + +G + + +AVK FQ GL Sbjct: 202 WPQMPGGPTLRPGDSSPAVAPLREILLRSGALPATDEGDGNVYTPALVAAVKRFQSGQGL 261 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 P G++ T +NV +R L +N+ R++ LL + ++VNIP S+ G Sbjct: 262 TPDGVIGPRTYAWLNVTPSMRASLLALNIQRLR-LLPASV-YTGIMVNIPNYSMTYFREG 319 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 K L S VIVGR R+TP+++S +N ++ NP W +P ++++D++ +DP Y + + Sbjct: 320 KDVLSSRVIVGRPARKTPLMNSELNNVVVNPPWNVPTKLVREDIVPKAMRDPGYFERHGY 379 Query: 272 HMIDEKGKEVFVEE---VDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDT 326 ++ +V V +DW+S NF + RQ PG N++ K S++ Y+HDT Sbjct: 380 TLLSGWSGDVQVINPYMLDWSSVSARNFPYRVRQAPGAGNSLGRFKFNMPSQDAIYLHDT 439 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P LFN +R +SGCVR+ L LL D WS + ++ T V + + Sbjct: 440 PNHALFNQDIRALSSGCVRINKASTLADMLLADA-GWSPERVASALQAGNTQYVPIRQRI 498 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 PV Y + W QFR DIY D + Sbjct: 499 PVRLYYQTVWVSDGGEPQFRTDIYNYDQL 527 >gi|307825667|ref|ZP_07655884.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] gi|307733244|gb|EFO04104.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] Length = 574 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 131/438 (29%), Positives = 220/438 (50%), Gaps = 41/438 (9%) Query: 24 LSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT----- 78 L+L + + S+L +++ ++ VN + NF ++ D+P++ K+++AQ Sbjct: 123 LALYDTALSISLL-RFLHDLHYGRVNPQGINFNLKLREKKLIDLPLLIKDSLAQNNLAQL 181 Query: 79 --------------EKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGD 123 ++A+A Y+ + + +L ++ LH G S + LR L GD Sbjct: 182 PLSLEPQFKQYQKLKQALANYRQLAAIAVPFKLDVKETLHPGESHPQIAELRRFLTTVGD 241 Query: 124 LDPSKGL------SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 L K + S+ DA V + VK FQ RHGL G + ++ A+NVP++ R+ QL+ Sbjct: 242 LPDDKTVISAEKSSLYTDAIV-TGVKAFQKRHGLTADGNIGKGSVAALNVPLNYRVTQLE 300 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN------GKVGLRSTVIVGR-VDRQTPI 230 + + R++ L E +G ++VNIPA L A ++ V +R V+VG + QTP+ Sbjct: 301 LAMERLRWLPELNVGAS-IIVNIPAFQLWAFDSIDQPDANIVNMR--VVVGNALKTQTPV 357 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVD 287 L + ++ I F PYW +P SII+ +++ L Q+ YL N+ M+ + K + + Sbjct: 358 LMAEMHFIDFMPYWNVPYSIIKNEILPKLIQNSNYLDKENMEMVSVFRDGEKPTALNQET 417 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 N + RQ PG NA+ K F ++++ Y+HDTP LF+ R + GCVRV Sbjct: 418 MNLLKEGKLRIRQRPGGKNALGKVKFIFPNKDDVYLHDTPANALFSKSRRDFSHGCVRVA 477 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 N L + LK+ W+ I+ + T K V L +PV F Y +A+ + ++F Sbjct: 478 NPQKLAEFALKNQDNWNAETIQLAMNTPKMQRVILKKPIPVLFFYTTAFFDQYDNLEFYP 537 Query: 408 DIYGLDNVHVGIIPLPED 425 DIYG D V +G + P+D Sbjct: 538 DIYGHDAVLLGALSKPDD 555 >gi|153000449|ref|YP_001366130.1| peptidoglycan-binding domain-containing protein [Shewanella baltica OS185] gi|151365067|gb|ABS08067.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS185] Length = 521 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 104/328 (31%), Positives = 168/328 (51%), Gaps = 15/328 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G S + + +RL + GDL ++ + + VK FQ RHGL G++ T Sbjct: 194 LTVGMSHPLLDTIAKRLWLLGDLAIEPMTNLVYSEELVVGVKRFQHRHGLKQDGVIGKQT 253 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 L +N R L N +R +++ E K+ Y+L+N+PA + V+NG L S VIV Sbjct: 254 LYWLNQSPKARAVLLAKNTIR-QRVFESKLEPSYLLINVPAFEMILVDNGTTVLNSKVIV 312 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 G+ RQTP+L S+I+ ++ NP W +P SI+++D++ +R++ YL + + D G+ V Sbjct: 313 GKSSRQTPLLDSQISSVVLNPSWRVPSSILRRDILPQIRRNGHYLNERQFDVYDYNGQLV 372 Query: 282 FVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 +W +F ++ Q PG NA+ K F + + Y+H T EP LF+ R Sbjct: 373 QHMPEEWQGLASTSFPYQLVQRPGAKNALGKYKFHFDNSFSVYLHGTSEPSLFSKDDRAL 432 Query: 340 TSGCVRVRNIIDLDVW----LLKDTPTWSRYHIEEVVKTRKTTP--VKLATEVPVHFVYI 393 +SGC+R+ + +L W L+KD W + + T P L+ ++PVH VY Sbjct: 433 SSGCIRIEKVTELAQWFKEHLVKDKRLWDK------LAPDVTEPQWFSLSQKLPVHLVYW 486 Query: 394 SAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 +AW Q+R DIY L+ +P Sbjct: 487 TAWLDDSEQEQYRSDIYHLEAELTNAVP 514 >gi|157375588|ref|YP_001474188.1| peptidoglycan binding domain-containing protein [Shewanella sediminis HAW-EB3] gi|157317962|gb|ABV37060.1| peptidoglycan-binding domain 1 protein [Shewanella sediminis HAW-EB3] Length = 465 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 103/326 (31%), Positives = 166/326 (50%), Gaps = 18/326 (5%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 GGW L G+ S+ + RL + GDLD + + + +++ FQ RHGL Sbjct: 139 GGW-------LKEGDYHKSIPEISFRLNMLGDLDSYDRNNKQLNRTLATSLLRFQRRHGL 191 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 ++ TL +N R R L N ++ L + R++L+NIPA + V++ Sbjct: 192 KQDAIIGPETLRWLNASPKNRARLLANNFLKKSSYLA-SLDSRFLLINIPAFEMVLVDHD 250 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 ++ L+S VIVG+ RQTP+L S+I+ ++ NP W +PR ++ +D++ +R++ Y+ N Sbjct: 251 EIQLKSRVIVGKPYRQTPMLSSQISNVVLNPSWRVPRRLLWRDLLPKVRENGSYITQRNF 310 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + D KG + +W F +R Q PG+ N + K F + N Y+HDT + Sbjct: 311 DVFDAKGVIIEKSPDEWQELAQGRFPYRLVQRPGEENTLGRYKFYFANDYNVYLHDTVDK 370 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTPTWSRYHIEEVVKTRKTTPVKLATE 385 LF R +SGC+RV N+ L W L++D TW ++ V+ +KT L Sbjct: 371 SLFEESNRALSSGCIRVENVESLANWMASNLVRDKQTW----VDMQVERQKTQWFSLDDS 426 Query: 386 VPVHFVYISAWSPKDSIIQFRDDIYG 411 + VH VY +AW + QFR+DIY Sbjct: 427 LAVHLVYWTAWIDSEGDSQFRNDIYN 452 >gi|269102898|ref|ZP_06155595.1| L,D-transpeptidase YcbB [Photobacterium damselae subsp. damselae CIP 102761] gi|268162796|gb|EEZ41292.1| L,D-transpeptidase YcbB [Photobacterium damselae subsp. damselae CIP 102761] Length = 582 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 111/338 (32%), Positives = 173/338 (51%), Gaps = 14/338 (4%) Query: 89 LSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVES---A 141 LS WP + + LGN + + L L + GDL + L+ D + A Sbjct: 232 LSHKRWPIFHVANKVSLGNPLPNAKNLITILEMLGDLPSYQAEQMLTENLDYLSPTLIEA 291 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 VK FQ RHGL P G++ +TL ++ R+R + +N +R+ +++ ++VNIP Sbjct: 292 VKSFQQRHGLSPDGVIGPNTLYWLSKSPQERLRVVALNTLRLSLWPDEQPNQ--IVVNIP 349 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 A L A N + + S VIVGR R TP++ S I ++FNPYW +P SI++KD++ +++ Sbjct: 350 AYELTARLNNQSVMTSKVIVGRPSRNTPMMDSTITSVVFNPYWNVPTSIMRKDILPKVKR 409 Query: 262 DPQYLKDNNIHMIDEKGK--EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYS 317 +P YL N ++ + V ++W P F + RQ PG NA+ K + Sbjct: 410 NPSYLTRNRYEILSSWSNPARISVNAINWRGVNPKTFPYRLRQKPGNKNALGRFKFNIPN 469 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 Y+HDT LFN R +SGCVRV L LL+ + + I+ +TR Sbjct: 470 DYAIYLHDTSSKRLFNKSDRALSSGCVRVEYAKGLAQLLLEYSGVSDKRFIQYSSRTRTK 529 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 T V L ++PVH +Y +AW+ + +I +RDDIY D + Sbjct: 530 T-VVLKNKIPVHLIYQTAWAEGNGLIYYRDDIYHYDKM 566 >gi|327478928|gb|AEA82238.1| putative periplasmic protein [Pseudomonas stutzeri DSM 4166] Length = 526 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 105/320 (32%), Positives = 170/320 (53%), Gaps = 11/320 (3%) Query: 93 GWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W LP P L G LRE L+ P+ L + +D + AV+ FQ++HGL Sbjct: 202 AWRPLPSGPTLRPGMRDERSPLLRELLLAGAGSAPA--LDLRYDDELVEAVRGFQLQHGL 259 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + G+V ++TL A+NV R+ QL++NL R++ + + + + +LV+I A L + Sbjct: 260 EADGVVGAATLAALNVSPASRLDQLRINLERLR-WISRDLEPQSLLVDIAGARLIYFRDS 318 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 ++ VGR RQTP L SRI+R+ NP W +P +I+++D + L+R+D YL + + Sbjct: 319 CPFWQTRTQVGREARQTPPLKSRISRLTLNPTWTVPPTILKQDKLPLIREDIAYLARHQM 378 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 +ID +G V VDW +P + RQD G N + I F + + Y+HDTP L Sbjct: 379 RVIDAQGNAVDPYAVDWANPR--GILLRQDAGPANPLGQVAIRFANPFSVYLHDTPSKPL 436 Query: 332 FNNVVRFETSGCVRVRNIIDL-DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 F R +SGCVRV + + L D+ L D R + ++++ +T +LA + P+ Sbjct: 437 FERAARAVSSGCVRVESALQLVDLLLEAD----ERDTVARLLQSGETHEYRLARQTPILM 492 Query: 391 VYISAWSPKDSIIQFRDDIY 410 Y +A + + ++R DIY Sbjct: 493 AYWTADADDSGLPRYRPDIY 512 >gi|126663199|ref|ZP_01734197.1| hypothetical protein FBBAL38_07595 [Flavobacteria bacterium BAL38] gi|126624857|gb|EAZ95547.1| hypothetical protein FBBAL38_07595 [Flavobacteria bacterium BAL38] Length = 529 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 106/361 (29%), Positives = 182/361 (50%), Gaps = 21/361 (5%) Query: 70 ISKETIAQTEKAI--------AFYQDILSRGGWPELPIRPLHLGNSSV------SVQRLR 115 I ++TIA T A+ + + +L P + + + + N + + +++ Sbjct: 162 IKEKTIASTFNALKPNHIVYKSLKKSLLEINKLPNISFQKIEIKNKIILNDTLPEMVKIK 221 Query: 116 ERLIISGDLDPSKGL-SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 +RL D L + +D AVK FQ RHGL G++ T++A+N + RI Sbjct: 222 KRLAYWKDYKNKDSLITWVYDTITYKAVKRFQARHGLAQDGVIGIGTIKALNTTKNERIE 281 Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 Q+ NL R K +G Y++ NIP L V N + ++VG R+TPIL S+ Sbjct: 282 QIFANLERWK-WYPFDLGEEYLIANIPEYMLNYVTNNDTVAKYRIVVGTKKRKTPILTSK 340 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 ++ +FNP W IP +II++D+ ++ Y ++ + + KG EV EE WN + Sbjct: 341 LSNFVFNPTWTIPPTIIKEDLTPAASKNRNYFPSRSLTIYNNKGTEVSPEE--WNPAKAN 398 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL-- 352 ++ + Q PG N++ K+ F +R++ Y+HDT F+ R +SGCVRV + L Sbjct: 399 SYRYVQKPGYNNSLGLVKLNFLNRHSVYLHDTNHRDYFSKTYRSLSSGCVRVETPLVLVK 458 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 + + + WS I+ ++K KT V + V ++ Y ++W +++ +QFR+DIY L Sbjct: 459 QILVKSNQEKWSGSEIDSIIKLEKTKTVSIKDTVNIYIFYWTSWF-ENNKLQFREDIYDL 517 Query: 413 D 413 D Sbjct: 518 D 518 >gi|56696802|ref|YP_167164.1| peptidoglycan binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56678539|gb|AAV95205.1| peptidoglycan binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 537 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 105/333 (31%), Positives = 173/333 (51%), Gaps = 10/333 (3%) Query: 86 QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + L+ GGW P + L G+ V LR RLI G +D S ++D ++ AV+ Sbjct: 191 EQALATGGWGPTVAGGKLAPGDGGPRVVALRNRLIAMGFMDRSA--VASYDGTLQKAVQA 248 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ+ HGL+ G+ TL+ +N V R++ + V L R ++ L + G R++LVN + Sbjct: 249 FQLAHGLEADGVAGDGTLDEINKSVADRLKSVIVALER-ERWLPRDRGERHILVNQTDFT 307 Query: 205 LEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + V++G+V + ++G+ DR++P + ++ NP W +PRSII K+ + LR + Sbjct: 308 AKIVDHGRVTFETRSVIGKNVSDRRSPEFSDEMEHMVINPSWYVPRSIITKEYLPKLRAN 367 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 P ++ ++ + D +G++V VD++ +F F RQ PGK NA+ K F ++ N Sbjct: 368 PNAVR--HLEITDSRGRQVNRGAVDFSQFSSRSFPFAMRQPPGKSNALGLVKFMFPNKYN 425 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP+ LF VR + GC+R+ + LL + V+ T + T V Sbjct: 426 IYLHDTPQKDLFAREVRAYSHGCIRLAQPFEFAYALLALQEADPKSFFHNVLNTGRETKV 485 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L VPVH +Y +A +R D+YG D Sbjct: 486 DLERHVPVHIIYRTAVVDDRGQAGYRRDVYGRD 518 >gi|85702799|ref|ZP_01033903.1| peptidoglycan binding protein, putative [Roseovarius sp. 217] gi|85671727|gb|EAQ26584.1| peptidoglycan binding protein, putative [Roseovarius sp. 217] Length = 541 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 99/332 (29%), Positives = 177/332 (53%), Gaps = 10/332 (3%) Query: 88 ILSRGGWP-ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 +++ GGW +P L G++ SV LR RLI G + ++ S +DA ++ AV+ FQ Sbjct: 197 LIALGGWGGAVPAETLRPGDTGQSVVALRNRLIAMGYV--TRSASQTYDARLQQAVQAFQ 254 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 HGLD G+ +T+ A+N R++ + V + R + L E + G R++LVN+ S Sbjct: 255 TDHGLDADGVAGGATMAALNTSASERLKSVIVAMERERWLTEDR-GTRHILVNLTDFSAR 313 Query: 207 AVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 ++N +V + ++G+ D R++P + ++ NP W +P SI + + ++++P Sbjct: 314 ILDNDQVTFATRAVIGKNDAGRRSPEFSDEMEHMVVNPTWHVPYSIAVNEYLPQMQRNPG 373 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTY 322 +++ + + G+EV V++ + NF F +Q P + NA+ K F ++ N Y Sbjct: 374 --AASHLKLYNRNGREVSRGAVNFGAYNARNFPFAIKQPPSERNALGLVKFMFPNKYNIY 431 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL 382 +HDTP+ LF+ R + GC+R+ D LL + + + + V+ TR+ T V+L Sbjct: 432 LHDTPQKALFDLEKRDFSHGCIRLHQPFDFAYALLAKQESDPQAYFKSVLDTRRETYVQL 491 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 VPVH +Y +A++ Q+R D+YG D Sbjct: 492 EQHVPVHIIYRTAFTQAQGRPQYRGDVYGRDG 523 >gi|300716096|ref|YP_003740899.1| conserved uncharacterized protein [Erwinia billingiae Eb661] gi|299061932|emb|CAX59048.1| conserved uncharacterized protein [Erwinia billingiae Eb661] Length = 616 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 150/285 (52%), Gaps = 8/285 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + A + AVK FQ GL+P G + T E +NV LR L +N+ R++ LL M Sbjct: 317 YSAELVEAVKRFQRWQGLEPDGAIGPRTREWLNVSPQLRASLLALNIQRLR-LLPDDMH- 374 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VNIP SL NG L S VIVGR DR+TP++ S +N ++ NP W +P +++++ Sbjct: 375 NGIMVNIPNYSLIYYLNGSQILASRVIVGRPDRKTPLMRSALNNVVLNPPWNVPTTLVRQ 434 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF--RQDPGKINAM 308 D++ ++QDP YL +N ++ + V +DW +F + RQ PG N++ Sbjct: 435 DIVPKVKQDPAYLYKHNYTLLSGWSNDAEVIDPSMIDWRMVSAASFPYRIRQAPGATNSL 494 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K S + Y+HDTP LF +R +SGCVRV DL LL+D W+ I Sbjct: 495 GRYKFNMPSSDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASDLANLLLQDA-GWNDTRI 553 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +K T V + +PV+ Y++AW D Q+R DIY D Sbjct: 554 SSTLKEGDTRYVPIRHRIPVNLYYLTAWVADDGKAQYRTDIYNYD 598 >gi|238749753|ref|ZP_04611258.1| Peptidoglycan-binding domain 1 protein [Yersinia rohdei ATCC 43380] gi|238712408|gb|EEQ04621.1| Peptidoglycan-binding domain 1 protein [Yersinia rohdei ATCC 43380] Length = 622 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 116/357 (32%), Positives = 177/357 (49%), Gaps = 16/357 (4%) Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS 127 P+ + ETI + IA D LS E H S S + + I + P+ Sbjct: 253 PVKTAETIPEDNPTIAAVNDDLSVDE--EKSRSQAHSLVVSPSAAPVADEPIAGEAIAPA 310 Query: 128 KGLSVA------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 S A + + AVK FQ+ HGL G++ + T E +NV R L +N+ Sbjct: 311 APTSTATVTDNVYTPELVEAVKRFQLWHGLSDDGIIGARTREWLNVSPQTRATLLALNIQ 370 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R++ +L ++ ++VNIP SL +NG+ L S VIVGR R+TP++ S +N ++ N Sbjct: 371 RLR-ILPGRVD-NGIMVNIPNYSLNYYKNGEQVLSSRVIVGRPSRKTPLMSSALNNVVVN 428 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF 298 P W +P S+I++D++ R D Y + + ++ + V E +DW+ P +F + Sbjct: 429 PPWNVPTSLIRQDILPKARYDSSYFQRHGYTVLSGWNNDAEVVDPEMIDWSMISPNHFPY 488 Query: 299 --RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 RQ+PG N++ K S + Y+HDTP LF +R +SGCVRV DL L Sbjct: 489 RLRQEPGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANML 548 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L+D W+ + +K TT V + VPV Y++AW +D QFR DIY D Sbjct: 549 LQDV-GWNDARVSSTLKQGSTTYVNIRERVPVQLYYLTAWVAEDGKPQFRTDIYNYD 604 >gi|192359326|ref|YP_001983485.1| cell wall degradation protein [Cellvibrio japonicus Ueda107] gi|190685491|gb|ACE83169.1| cell wall degradation protein [Cellvibrio japonicus Ueda107] Length = 746 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 100/288 (34%), Positives = 149/288 (51%), Gaps = 4/288 (1%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 FD Y+ AVK FQ L+ G + +T A+NV R+ Q++VNL R + LL + Sbjct: 458 FDEYLVEAVKTFQREQYLEVDGAIGPATRAALNVSAKTRLEQIRVNLDRARWLL-HSIPP 516 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 VLV+I + + + RS V VG R +P+ S +N I NP W +P +I++K Sbjct: 517 EMVLVDIAGFKVTYFKASQPIWRSRVQVGMAYRTSPLFRSEVNYITLNPTWTVPPTILRK 576 Query: 254 DMMALLRQ-DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 D++ LR+ D YL+DN I +++ +G+E+ +DW P RQD G A+ Sbjct: 577 DILPKLRKGDLSYLRDNRIRVLNRQGQELDPASIDWQRPG--AITLRQDAGPKAALGKAV 634 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 I F + + Y+HDTP LF R +SGC+RV ++L LL DTP W IE+ + Sbjct: 635 IRFPNSHAVYLHDTPHQRLFEKSQRAFSSGCIRVERALELVQLLLSDTPGWDAAAIEKAL 694 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 T T V LA VP+ Y +A + + F+ DIY D V + + Sbjct: 695 ATGNTRNVILARRVPILLAYWTADVIDEHKVVFKPDIYARDPVLLAAL 742 >gi|312887097|ref|ZP_07746701.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] gi|311300409|gb|EFQ77474.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] Length = 550 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 102/332 (30%), Positives = 174/332 (52%), Gaps = 19/332 (5%) Query: 85 YQDILSRGGWPELPIRPLHL--GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 Y+ + + W + + ++L G++S +++ ++ RL+ D + ++DA + AV Sbjct: 220 YRSLDAADEWKPVDTKSVNLKPGDTSAAIKEIKIRLLRLQDFQ-GDTFNESYDADLIIAV 278 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 K FQ R+GLD SG ++ T+ AMNVP+ +RI+Q+ VN+ R + L + ++ VNIP Sbjct: 279 KQFQYRNGLDTSGRLNKETIMAMNVPLKIRIKQILVNMER-ARWLPVSLNADFLAVNIPE 337 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 +L + V+VG+ QT I + I ++F+PYW IP+SI++ +++ L++ Sbjct: 338 FTLHVYHADSLLWSCPVVVGQKVHQTSIFYGEIKYVVFSPYWNIPQSIVRAEVVPGLKKS 397 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY 322 P YL + + + K P I RQ PG N++ K F + N Y Sbjct: 398 PDYLLRHQMEITGYKE----------GLP-----IVRQKPGPENSLGLVKFLFPNSYNIY 442 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL 382 +HDTP+ LF R + GC+R+ L +LLK+ WS I+ + + K V L Sbjct: 443 LHDTPKKSLFGETTRDFSHGCIRIMEPAKLAAFLLKNHNKWSGIKIKRAMNSGKEQYVSL 502 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +VPV Y +A++ + ++ FR DIY LD+ Sbjct: 503 EHKVPVFITYFTAFTDRRGLLNFRKDIYSLDD 534 >gi|261344276|ref|ZP_05971920.1| putative peptidoglycan binding domain protein [Providencia rustigianii DSM 4541] gi|282567879|gb|EFB73414.1| putative peptidoglycan binding domain protein [Providencia rustigianii DSM 4541] Length = 575 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 110/338 (32%), Positives = 171/338 (50%), Gaps = 26/338 (7%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLD-------------PSKGLSVAFDAYVES-----A 141 + L G +S V LRE L+ G LD P + V +A V + A Sbjct: 224 KALKPGQASDDVITLREILVRDGLLDASVIGEAIDASAPPEEIAKVTANARVYNDELVEA 283 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 VK FQ+++GL+ G++ T +N+ + + +N+ R++ ++ + G +LVNIP Sbjct: 284 VKKFQLQYGLEADGVIGRGTRVWLNMQPKQKAGLMALNIQRLR-IVPESSGTG-ILVNIP 341 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 A +L+ N ++ L S VIVGR DR+TPI+ S +N ++ NP W +P S+ +KD+ + Sbjct: 342 AYTLDFYLNNEIILDSKVIVGRADRKTPIMSSALNNVVINPPWSVPTSLARKDIAPKGKV 401 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEE---VDWNSPEPPNFIF--RQDPGKINAMASTKIEFY 316 DP Y + G++ + + +DW + P NF + RQ PG N++ K Sbjct: 402 DPSYFSRKGYTVYSGWGQDAYEVDPYSIDWENMSPANFPYRIRQAPGPTNSLGRYKFNMP 461 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 S + Y+HDTP LFN R +SGCVRV +L LL D W++ I+ +K Sbjct: 462 SSDAIYLHDTPNHSLFNKNARAISSGCVRVNKASELATILLGDA-GWAQTRIDGALKDGS 520 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 T V + +PV+ Y +AW KD Q+R DIY D Sbjct: 521 TRYVNIPDRIPVYLYYQTAWVDKDQQPQYRADIYQYDG 558 >gi|121606474|ref|YP_983803.1| peptidoglycan-binding domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120595443|gb|ABM38882.1| Peptidoglycan-binding domain 1 protein [Polaromonas naphthalenivorans CJ2] Length = 525 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 114/360 (31%), Positives = 182/360 (50%), Gaps = 29/360 (8%) Query: 76 AQTEKAIAFYQDILSRGGW----PELP---IRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 AQ +A+A Y++ ++ W P LP L G S + L ERL GD+ P Sbjct: 155 AQLREALARYRERVNHPAWRQPLPRLPGGKAGKLAPGQSYAGLALLAERLTALGDMAPGL 214 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK--KL 186 L ++ + A K FQ RHGL G++ +TL + V R+RQ+++ L R++ L Sbjct: 215 PLPARYEGPLVDAAKAFQQRHGLAADGVIGKTTLAQLQVMPAARVRQIELALERLRWTPL 274 Query: 187 LEQKMGLRYVLVNIPAASLEA--VENGKVGLRS--TVIVGR-VDRQTPILHSRINRIMFN 241 L+ G R ++VNIP L A V++G++ ++ ++VG+ +D +TP+ + I F+ Sbjct: 275 LQ---GPRMIVVNIPEFVLRAYEVQDGQIHVQQEMKIVVGKALDTRTPLFDEDMRFIEFS 331 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK------EVFVEEVDWNSPEPPN 295 PYW +P SI + +++ LR+DP YL N+ + G+ +E V Sbjct: 332 PYWNVPPSIARAEIVPRLRRDPGYLARENMEFVSAGGRVDKTVSAGLLEAVLAGQSR--- 388 Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 RQ PG NA+ K F + +N Y+H TP LF R + GC+RV + + L + Sbjct: 389 --IRQRPGPKNALGDIKFVFPNSDNIYLHHTPATQLFERARRDFSHGCIRVEHPVALAKF 446 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 +LK+ P W+ I+ + ++ ++LA VPV Y + KD F DDIYGLD + Sbjct: 447 VLKNMPEWTPERIQNAMSRGESATLRLAEPVPVLIAYGTTLV-KDGRTFFFDDIYGLDRL 505 >gi|126736346|ref|ZP_01752088.1| peptidoglycan binding domain protein, putative [Roseobacter sp. CCS2] gi|126714167|gb|EBA11036.1| peptidoglycan binding domain protein, putative [Roseobacter sp. CCS2] Length = 536 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 108/334 (32%), Positives = 167/334 (50%), Gaps = 10/334 (2%) Query: 86 QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + ++ +GGW P +P R G+S V LR RLI G L + + +D + A+ Sbjct: 190 ERLIGQGGWGPTVPGRKYERGDSGAGVVALRNRLIAMGYLPRTN--TQTYDDAIYGAITR 247 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL G + TL+ +NV + R+R + V + R ++ + + G R+V VNI + Sbjct: 248 FQQAHGLAIDGTAGAGTLDEINVQPEARLRSIIVAMER-ERWINRPRGERHVWVNITDFT 306 Query: 205 LEAVENGKVGLRSTVIVGRVDRQ--TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + +NG + +VG DR TP + ++ NP W +PRSII K+ + L+ + Sbjct: 307 AKIYDNGVETFSTRSVVGARDRDRVTPEFSDVMEFMVINPSWYVPRSIITKEFLPQLQAN 366 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF--IFRQDPGKINAMASTKIEFYSRNN 320 P ++ N+ + D G+ V D++ P NF FR+ P + NA+ K F +R N Sbjct: 367 PNAVR--NLVITDRNGRVVDRSTADFSQYTPTNFPYSFREPPSQGNALGLVKFMFPNRYN 424 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP LF R + GCVR+ + D LL + +++ + V Sbjct: 425 IYLHDTPSKSLFGRETRAYSHGCVRLADPFDFAYALLARQVGNPEEVFQGHLRSGRERRV 484 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 L T VPVH VY +A P D +QFR D+YG D Sbjct: 485 DLETPVPVHLVYRTAIVPADGKVQFRRDVYGRDG 518 >gi|110637821|ref|YP_678028.1| hypothetical protein CHU_1417 [Cytophaga hutchinsonii ATCC 33406] gi|110280502|gb|ABG58688.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406] Length = 568 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 112/352 (31%), Positives = 187/352 (53%), Gaps = 29/352 (8%) Query: 82 IAFYQ---------DILSRGGW--PELPI--RPLHLGNSSVSVQRLRERLIISGDLDPSK 128 IAFY D L G+ E+P + L G++S + +++RL + + ++ Sbjct: 217 IAFYASLQTALINADSLEANGFTSKEIPYIGKKLVKGDTSFVILEVKKRLQATTEYSFNE 276 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKKLL 187 L+ FD + +VK+FQ GL +G++D +TL +N P +R ++ N+ R + Sbjct: 277 -LNNVFDEQLFQSVKIFQEHVGLHGTGVIDKTTLAKLNYTPAQIR-NTIRANMERCR-WF 333 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 ++ Y+LVNIP +L +NGKV TVIVG+ QTP+ + I+ + FNPYW +P Sbjct: 334 SNELPNEYILVNIPDYTLSHFKNGKVIYNETVIVGKQLNQTPVFQATISNVEFNPYWTVP 393 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV-----FVEEVDWNSPEPPNFIFRQDP 302 RSI K+++ L++DPQYL+ +N+ ++ E KE+ F D P F ++ P Sbjct: 394 RSIAVKEILPSLKKDPQYLEKHNMFLM-EGDKEIASPPSFAGYSDSYFP----FTIKEKP 448 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ K F + + YMHDTP LF+N VR + GC+R+ N + LL Sbjct: 449 GPKNSLGQVKFSFPNPYSIYMHDTPAKYLFDNDVRSYSHGCIRLHNPLKFADHLLSQQGV 508 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK-DSIIQFRDDIYGLD 413 + I+E+V++ K + L T++P+ Y + ++ K D+ + F D+Y D Sbjct: 509 TEK-RIDEIVQSEKNYVMALETKMPIMISYFTCYTKKGDNRLYFFYDVYDSD 559 >gi|317047572|ref|YP_004115220.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. At-9b] gi|316949189|gb|ADU68664.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. At-9b] Length = 602 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 100/295 (33%), Positives = 154/295 (52%), Gaps = 8/295 (2%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 +P + + +D + VK FQ GL G + T E +NV +R L +N+ R++ Sbjct: 294 NPVQSANNVYDNALVEGVKRFQHWQGLADDGAIGPRTREWLNVSPQMRAALLALNIQRLR 353 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL M ++VNIP SL NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 354 -LLPDDMH-NGIMVNIPNYSLTYYNNGATILSSRVIVGRPDRKTPLMRSALNNVVLNPPW 411 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF--R 299 +P S++++D++ ++QDP YL + ++ + V +DWN +F + R Sbjct: 412 NVPTSLVRQDIVPKVKQDPGYLYKHGYTLLSGWSADAQVIDPSSLDWNMVSAASFPYRIR 471 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG +N++ K S + Y+HDTP LF +R +SGCVRV +L LL+D Sbjct: 472 QAPGAMNSLGRYKFNMPSSDAIYLHDTPNHNLFQRDIRALSSGCVRVNKASELADLLLQD 531 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 W+ I + +K T V + +PV+ Y++AW D Q+R DIY DN Sbjct: 532 A-GWNDSRISDTLKEGNTRYVPIRHRIPVNLYYLTAWVADDGQPQYRTDIYNYDN 585 >gi|238785818|ref|ZP_04629788.1| Peptidoglycan-binding domain 1 protein [Yersinia bercovieri ATCC 43970] gi|238713271|gb|EEQ05313.1| Peptidoglycan-binding domain 1 protein [Yersinia bercovieri ATCC 43970] Length = 606 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 147/279 (52%), Gaps = 8/279 (2%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 +AVK FQ+ HGL G++ + T E +NV R L +N+ R++ L Q ++VN Sbjct: 313 AAVKRFQLWHGLSDDGVIGARTREWLNVSPQTRATLLALNIQRLRILPGQVDN--GIMVN 370 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IP SL +NG L S VIVGR R+TP++ S +N ++ NP W +P S++++D++ Sbjct: 371 IPNYSLNYYKNGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSLVRQDIVPKA 430 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEE---VDWNSPEPPNFIF--RQDPGKINAMASTKIE 314 R D Y + + ++ E V + +DW+ P NF + RQ PG N++ K Sbjct: 431 RYDAGYFQRHGYTVLSGWSNEAEVVDPSMIDWSMISPNNFPYRLRQAPGASNSLGRFKFN 490 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 S + Y+HDTP LF +R +SGCVRV DL LL+D W+ + +K Sbjct: 491 MPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWNDARVSSTLKQ 549 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 TT V + VPV Y++AW D QFR DIY D Sbjct: 550 GDTTYVNIRQRVPVQLYYLTAWVADDGKPQFRTDIYNYD 588 >gi|328544358|ref|YP_004304467.1| peptidoglycan binding domain protein [polymorphum gilvum SL003B-26A1] gi|326414100|gb|ADZ71163.1| Putative peptidoglycan binding domain protein [Polymorphum gilvum SL003B-26A1] Length = 543 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 108/327 (33%), Positives = 156/327 (47%), Gaps = 6/327 (1%) Query: 92 GGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GG+ +P L G S + LR R+ L P +D + AVK FQ HG Sbjct: 207 GGFTPVPDGAVLKPGMSDPRLDVLRRRMEQQDYLAPGAHAGDVYDGALVEAVKTFQDYHG 266 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L G+V TL MNVP+ R+ Q+++N+ R ++ + +G YV VN+ +L+ V + Sbjct: 267 LAVDGVVGKDTLAEMNVPIGRRLIQMELNMER-RRWMPDDLGEAYVFVNLADQNLKVVRD 325 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 GK + V+VG+ TP+ + + NPYW +P SI + + L +P+ L N Sbjct: 326 GKTVHTARVVVGKPYHATPVFSKDMTYVEVNPYWNVPPSIATNEYLPKLISNPRALDGQN 385 Query: 271 IHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 I + EV ++ W S P F RQDPG NA+ K F + N Y+HDTP Sbjct: 386 IRVFSGDA-EVSPHQIAWASYSGGPFPFKLRQDPGDGNALGRIKFMFPNEFNIYIHDTPS 444 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R + GC+RV + L LL D R ++ + + L +PV Sbjct: 445 RALFERAQRSFSHGCIRVSDPFALAEVLLADQ-GLDRAALDRAKASGDRQVITLRRPIPV 503 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDNV 415 H Y++AW KD FR DIYG D V Sbjct: 504 HLTYLTAWMNKDGSTHFRKDIYGRDEV 530 >gi|238753519|ref|ZP_04614882.1| Peptidoglycan-binding domain 1 protein [Yersinia ruckeri ATCC 29473] gi|238708472|gb|EEQ00827.1| Peptidoglycan-binding domain 1 protein [Yersinia ruckeri ATCC 29473] Length = 620 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 103/292 (35%), Positives = 151/292 (51%), Gaps = 11/292 (3%) Query: 130 LSVAFDAYVE---SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 LSV + Y E +AVK FQ GL G++ T E +NV +R L +N+ R++ L Sbjct: 314 LSVTDNQYGEELVAAVKRFQQWQGLTDDGVIGPRTREWLNVSPQMRASLLALNIQRLRIL 373 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 Q ++VNIP SL NG L S VIVGR R+TP++ S +N ++ NP W + Sbjct: 374 PGQVT--TGIMVNIPNYSLSYYLNGTEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNV 431 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF--RQD 301 P S+I++D+M R D Y + + ++ G + +DW+ P +F + RQ+ Sbjct: 432 PISLIRQDIMPKARNDASYFQRHGYTVLSGWGNDAEAINPSMIDWSLISPNHFPYRLRQE 491 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 492 PGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLASMLLQDA- 550 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ + +K TT V + +PV Y++AW +D QFR DIY D Sbjct: 551 GWNNERVSSTLKQGNTTYVNIRQRIPVQLYYLTAWVAEDGKPQFRTDIYNYD 602 >gi|238795867|ref|ZP_04639380.1| Peptidoglycan-binding domain 1 protein [Yersinia mollaretii ATCC 43969] gi|238720330|gb|EEQ12133.1| Peptidoglycan-binding domain 1 protein [Yersinia mollaretii ATCC 43969] Length = 574 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 100/278 (35%), Positives = 148/278 (53%), Gaps = 8/278 (2%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ+ HGL G++ + T E +N+ R L +N+ R++ +L K+ ++VNI Sbjct: 282 AVKRFQLWHGLSDDGVIGARTREWLNISPQTRATLLALNIQRLR-ILPGKVD-NGIMVNI 339 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P SL +NG L S VIVGR R+TP++ S +N ++ NP W +P S++++D++ R Sbjct: 340 PNYSLNYYKNGTEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSLVRQDIVPKAR 399 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEE---VDWNSPEPPNFIF--RQDPGKINAMASTKIEF 315 D Y + + ++ E V + +DW+ P NF + RQ PG N++ K Sbjct: 400 YDAGYFQRHGYTVLSGWSNEAEVVDPSMIDWSMISPNNFPYRLRQAPGASNSLGRFKFNM 459 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 S + Y+HDTP LF +R +SGCVRV DL LL+D W+ + VK Sbjct: 460 PSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWNDARVSSTVKQG 518 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 TT V + VPV Y++AW D QFR DIY D Sbjct: 519 DTTYVNIRQRVPVQLYYLTAWVADDGRPQFRTDIYNYD 556 >gi|146299088|ref|YP_001193679.1| hypothetical protein Fjoh_1328 [Flavobacterium johnsoniae UW101] gi|146153506|gb|ABQ04360.1| Uncharacterized protein [Flavobacterium johnsoniae UW101] Length = 539 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 106/335 (31%), Positives = 166/335 (49%), Gaps = 27/335 (8%) Query: 85 YQDILSRGGWPELPI-----RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 Y++I G W ++ I + L +S VQ++RERL + GDL S +D + Sbjct: 211 YRNIEKNGLWKKIEIDEANYKELKPLDSGKVVQQIRERLFVVGDLKEDSK-SQYYDQEMM 269 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKMGLRYVLV 198 AV ++ R+GL + ++ MN P+ RIR + +N+ R + + + YV+V Sbjct: 270 DAVLKYKKRYGLKLNYTFTKEQIDQMNEPISNRIRTIMLNMERCRWIPTKLAKADEYVMV 329 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 NIP+ L V++GK L S V VG +T I I+RI+F+PYW +P SII+ ++ Sbjct: 330 NIPSFRLIYVKDGKYDLVSDVFVGTRMTETVIFSGNIDRIVFSPYWYVPASIIKNELKLK 389 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR 318 + +D YL D+N+ +WN RQ PG N++ K F + Sbjct: 390 MAEDKNYLADHNM---------------EWNGGS-----VRQKPGPNNSLGLVKFMFPNP 429 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 N+ Y+HDTP LF+ R + GC+ VR+ L + +LKD P W I + + K T Sbjct: 430 NDIYLHDTPAKSLFDFEKRTFSHGCINVRDAKKLALEILKDNPDWPVDKINDAMSGEKET 489 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L ++P++ Y +AW D I F D+Y D Sbjct: 490 TCMLKNKIPIYIGYFTAWVTDDGEIGFYPDVYDRD 524 >gi|146311101|ref|YP_001176175.1| hypothetical protein Ent638_1444 [Enterobacter sp. 638] gi|145317977|gb|ABP60124.1| Peptidoglycan-binding domain 1 protein [Enterobacter sp. 638] Length = 607 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 102/289 (35%), Positives = 156/289 (53%), Gaps = 7/289 (2%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 G A+D + +AVK FQM GL G++ ST + +NV R L +N+ R++ LL Sbjct: 304 GKPAAYDRELVAAVKTFQMTQGLGADGVIGPSTRDWLNVSPAQRAGVLALNIQRLR-LLP 362 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P Sbjct: 363 GTLSTG-IMVNIPAYSLVYYQNGSEVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPP 421 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGK 304 ++ +KD++ L DP YL+ + ++ ++ +VDW + P N F F+Q PG+ Sbjct: 422 TLARKDILPKLWDDPGYLERHGYTVMRGWNSSQAIDPYQVDWATITPSNLPFRFQQAPGE 481 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 N++ K S + Y+HDTP LF R +SGCVRV +L LL D W+ Sbjct: 482 RNSLGRYKFNMPSSDAIYLHDTPNHNLFQKDARALSSGCVRVNKASELANMLLGDA-GWN 540 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ +D Q+R DIY D Sbjct: 541 DTRISDTLKEGNTRYVNIRHNIPVNLYYLTAFVGEDGRTQYRTDIYNYD 589 >gi|24373464|ref|NP_717507.1| hypothetical protein SO_1899 [Shewanella oneidensis MR-1] gi|24347755|gb|AAN54951.1|AE015633_3 conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 571 Score = 166 bits (419), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 102/362 (28%), Positives = 188/362 (51%), Gaps = 21/362 (5%) Query: 77 QTEKAIAFYQDILSRGGWPELP----IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 Q ++ +A Y+D+ +R + +P I+P G +S S++ + RL G LD + + Sbjct: 200 QLKQYLAHYKDLAARYPFTTIPYTEVIKP---GTTSPSIKGIAARLKEQGYLDANATVQD 256 Query: 133 A---------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 A +D +E+A++ FQ H L G++ + T+ A+NVP R+ Q+++NL R Sbjct: 257 ATLVANAPLLYDNILEAAIRQFQADHSLKADGVIGAGTMAALNVPYAQRVEQIRINLER- 315 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + Y++VN+ L ++ + R+ +I+G++D +TP+ S++ ++ NP Sbjct: 316 ARWLSANLSANYLIVNLAGYELLLFKDNNLSWRTDIIIGKIDSKTPLFKSKLKYVVVNPT 375 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF--IFRQD 301 W +P SI +++ R+DP YL + +++ G V +DW+S NF F Q+ Sbjct: 376 WTVPNSI-STEIINHQRKDPDYLHKKHFKVVESSGTPVDASGIDWHSMTRKNFPYWFVQE 434 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG N++ K F ++ + Y+HDTP LF+ R + GC+RV++ + L LL Sbjct: 435 PGADNSLGLVKFIFPNQYSIYLHDTPSKNLFDKTDRAFSHGCIRVKDPLVLADKLLSANA 494 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 WS + + KT + L + + +Y +A + K+ I+F +D+Y D V + + Sbjct: 495 NWSSETLNNKLAEGKTENLFLDEPLDILIMYWTA-TIKNGKIKFYNDVYTRDPVLIEALN 553 Query: 422 LP 423 P Sbjct: 554 RP 555 >gi|254464823|ref|ZP_05078234.1| peptidoglycan-binding domain 1 [Rhodobacterales bacterium Y4I] gi|206685731|gb|EDZ46213.1| peptidoglycan-binding domain 1 [Rhodobacterales bacterium Y4I] Length = 542 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 103/333 (30%), Positives = 170/333 (51%), Gaps = 10/333 (3%) Query: 86 QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + +L+ GGW P + + L G +V LR RL+ G L S S +DA + AV+ Sbjct: 196 EQVLAAGGWGPAVQAKTLEPGEQGPAVIALRNRLMAMGYLPRSAARS--YDAAMVQAVQS 253 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL+ G+ + TL +N PV R++ + + + R ++ L G R++LVN + Sbjct: 254 FQSDHGLETDGVAGAGTLAEVNKPVSDRLKSVIIAMER-ERWLSPDRGERHILVNQTDFT 312 Query: 205 LEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + V+NG V + ++G+ DR++P + ++ NP W +PRSII K+ + LR + Sbjct: 313 AKIVDNGDVTFETRSVIGKNTDDRRSPEFSDEMEHMVINPSWYVPRSIITKEYLPKLRNN 372 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 P + +I + D +G+ V D++ NF + RQ P NA+ K F ++ N Sbjct: 373 PNAV--GHIQITDRRGRVVNRSAADFSQYNARNFPYSMRQPPSSSNALGLVKFMFPNKYN 430 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP+ LF VR + GC+R+ + LL + ++ + + T V Sbjct: 431 IYLHDTPQKSLFAREVRAFSHGCIRLAQPFEFAYALLARQTEDPKAFFHRILNSGQETKV 490 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +L +VPVH +Y +A +FR D+YG D Sbjct: 491 ELEQKVPVHIIYRTAVVSSKGRAEFRRDVYGRD 523 >gi|312961568|ref|ZP_07776069.1| hypothetical protein PFWH6_3485 [Pseudomonas fluorescens WH6] gi|311284247|gb|EFQ62827.1| hypothetical protein PFWH6_3485 [Pseudomonas fluorescens WH6] Length = 533 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 105/318 (33%), Positives = 164/318 (51%), Gaps = 13/318 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G V L RL G L + G + + SAVK FQ+ H L G++ + Sbjct: 216 LRPGMEDPRVPELARRLHSGGYLPAERQGNGKQYSPELVSAVKAFQLSHSLQSDGVIGAG 275 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T+ +N+ +R QL++NL R + L + + VLVN+ AA L ++G ++ + Sbjct: 276 TVAELNISPAMRREQLRINLERFR-WLAKDLEPEGVLVNVAAAQLSVYQSGIPVWQTRLQ 334 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VGR +RQTP+L SRI R+ NP W IP +I+++D + +R +P+YL+ N+ ++D +G Sbjct: 335 VGRAERQTPLLKSRITRLTLNPTWTIPPTIMREDKLPAIRLNPEYLRQQNLQVLDAEGHA 394 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 + E +DW P N + RQ+ G N + + F + + Y+HDTP LF R + Sbjct: 395 LAPELIDWARPG--NILLRQEAGPRNPLGKIVMRFPNPYSVYLHDTPSQPLFTKGPRAFS 452 Query: 341 SGCVRVRNIIDLDVWLLKD---TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 SGCVRV + LL+D +P R +E++ T T +LAT VPV Y + Sbjct: 453 SGCVRVEQPL-----LLRDLLVSPA-ERARTDELLATGVTHEFRLATPVPVLLGYWTVEV 506 Query: 398 PKDSIIQFRDDIYGLDNV 415 + + + DIY D V Sbjct: 507 DRQGGLVYAPDIYARDLV 524 >gi|212709809|ref|ZP_03317937.1| hypothetical protein PROVALCAL_00857 [Providencia alcalifaciens DSM 30120] gi|212687620|gb|EEB47148.1| hypothetical protein PROVALCAL_00857 [Providencia alcalifaciens DSM 30120] Length = 575 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 110/338 (32%), Positives = 170/338 (50%), Gaps = 26/338 (7%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLD-------------PSKGLSVAFDAYVES-----A 141 + L G +S V LRE L+ G L+ P + V +A V S A Sbjct: 224 KTLKPGQASDDVITLREILVRDGLLEASAVSETVDASAPPEEINKVTANARVYSDDLVEA 283 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 VK FQ+++GL+ G++ T +N+ + + +N+ R++ ++ + G +LVNIP Sbjct: 284 VKKFQLQYGLEADGVIGKGTRVWLNMQPKQKAGLMALNIQRLR-IVPESSGTG-ILVNIP 341 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 A +L+ N + L S VIVGR DR+TPI+ S +N ++ NP W +P S+ +KD+ + Sbjct: 342 AYTLDFYLNNDIILDSKVIVGRADRKTPIMSSALNNVVINPPWSVPTSLARKDIAPKGKM 401 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEE---VDWNSPEPPNFIF--RQDPGKINAMASTKIEFY 316 DP Y + G++ + + +DW + P NF + RQ PG N++ K Sbjct: 402 DPSYFSRKGYTVYSGWGQDAYEIDPYTIDWENITPANFPYHIRQAPGSSNSLGRYKFNMP 461 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 S + Y+HDTP LFN R +SGCVRV +L LL D W++ I+ +K Sbjct: 462 SSDAIYLHDTPNHSLFNKNARAISSGCVRVNKASELATILLGDA-GWAQTRIDGALKEGS 520 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 T V + +PV+ Y +AW KD Q+R DIY D Sbjct: 521 TRYVNIPDRIPVYLYYQTAWVDKDQQPQYRADIYQYDG 558 >gi|311280161|ref|YP_003942392.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] gi|308749356|gb|ADO49108.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] Length = 602 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 116/350 (33%), Positives = 173/350 (49%), Gaps = 33/350 (9%) Query: 94 WPELPIR-PLHLGNSSVSVQRLRERLIISGDLD-------------------PSKGLSVA 133 WP++ L+ G S V LRE L +G LD P K + A Sbjct: 238 WPQMASSGKLNPGQWSKDVPALREILQRTGMLDNTPNIALPGDSGAVSPSAAPVKKVKAA 297 Query: 134 ------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 +D + AVK FQ GL G++ ST +A+NV R L +N+ R++ LL Sbjct: 298 SSAPAVYDRQLVEAVKRFQASQGLGADGVIGQSTRDALNVSSAQRAGVLALNIQRLR-LL 356 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 K+ ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P Sbjct: 357 PGKLSTG-IMVNIPAYSLVYYQNGSQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVP 415 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPG 303 ++ +KD++ + DP YL+ + ++ + + VDW++ P N F F+Q PG Sbjct: 416 PTLARKDILPKVWNDPGYLERHGYTVLRGWNSKETINPYHVDWSTITPSNLPFRFQQAPG 475 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ K S Y+HDTP LF R +SGCVRV +L LL+D W Sbjct: 476 AKNSLGRYKFNMPSSEAIYLHDTPNHNLFQKDTRALSSGCVRVNKAPELASMLLQDA-GW 534 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 535 NDTRISDALKQGDTRYVNIRQNIPVNLYYLTAFVGPDGRTQYRTDIYNYD 584 >gi|319955785|ref|YP_004167048.1| erfk/ybis/ycfs/ynhg family protein [Nitratifractor salsuginis DSM 16511] gi|319418189|gb|ADV45299.1| ErfK/YbiS/YcfS/YnhG family protein [Nitratifractor salsuginis DSM 16511] Length = 575 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 110/351 (31%), Positives = 179/351 (50%), Gaps = 10/351 (2%) Query: 76 AQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGL-SVA 133 A+ +KA+ Y +I RGGW LP + + G S ++ +R+ L I GDL S L S Sbjct: 199 AKLKKALERYLEIADRGGWKPLPAFKAIKPGQSHPAIPLIRQHLRIEGDLPASASLDSDI 258 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D ++ A++ +++RHGL + ++D+ T +N V +I L++NL RIK + Q+ + Sbjct: 259 YDETLQKAMRRYKLRHGLPGTPVIDAQTRRWLNTSVQYKIAMLRLNLDRIKWIWRQEAPV 318 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R + +NIPA L E + V+ G+ D TP+ H+ + I+ NPYW IP SI++ Sbjct: 319 R-IELNIPAFRLYVYEGQHLVDTMRVVTGKPDHPTPVFHNTMKYIVVNPYWKIPESIVRS 377 Query: 254 DMMALLRQDPQYLKDNN--IHM-IDEKGKEVFVEEVDWNSPEPPN----FIFRQDPGKIN 306 +M+ L +DP Y + +H DE + ++W+ N + F Q PG N Sbjct: 378 EMLKHLVKDPYYYERRGKVLHAGWDEDSPRIDPGTINWSQYVGNNKTIPYRFMQVPGTRN 437 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 A+ K F ++ + Y+HDTP LF R + GC+R++ +L L Sbjct: 438 ALGKIKFLFPNKYSVYIHDTPSKKLFFRSTRAFSHGCMRIQKPRELLKVLALYNSNIDVE 497 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 I E + TR+ + L E+PV VY++A+ + FR DIY D + Sbjct: 498 GIMEQLGTREKETISLLHEIPVDIVYLTAFVDDYGNLNFRKDIYHYDKYQM 548 >gi|291616920|ref|YP_003519662.1| YcbB [Pantoea ananatis LMG 20103] gi|291151950|gb|ADD76534.1| YcbB [Pantoea ananatis LMG 20103] Length = 620 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 149/281 (53%), Gaps = 8/281 (2%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 +AVK FQ GLD G + T E +NV R L +N+ R++ LL M ++VN Sbjct: 327 AAVKRFQQWQGLDADGAIGLRTREWLNVSPQQRAALLALNIQRLR-LLPDDMH-NGIMVN 384 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IP SL NG L S VIVGR DR+TP++ S +N ++ NP W +P +++++D++ + Sbjct: 385 IPNYSLNYYNNGTKVLSSRVIVGRPDRKTPLMRSALNNVVLNPPWNVPTNLVRQDIIPKV 444 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF--RQDPGKINAMASTKIE 314 +QDP YL + ++ + V +DW+ +F + RQ PG+ N++ K Sbjct: 445 KQDPTYLYKHGYTLLSGWSADSEVIDPSMIDWSMVSASSFPYRIRQAPGQTNSLGRYKFN 504 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 S + Y+HDTP LF +R +SGCVRV +L LL+D W+ I + +K Sbjct: 505 MPSSDAIYLHDTPNHNLFQRDIRALSSGCVRVNKASELAGILLQDV-GWNDARISDTLKQ 563 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 T V + +PV+ Y++AW D QFR DIY DN Sbjct: 564 GDTRYVPIRHRIPVNLYYLTAWVADDGKTQFRTDIYNYDNT 604 >gi|90579750|ref|ZP_01235559.1| hypothetical amidase [Vibrio angustum S14] gi|90439324|gb|EAS64506.1| hypothetical amidase [Vibrio angustum S14] Length = 587 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 108/351 (30%), Positives = 179/351 (50%), Gaps = 18/351 (5%) Query: 78 TEKAIAFYQDI----LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK--GLS 131 T AIA YQD+ L+ + ++ + L N L + L GD+D + LS Sbjct: 222 TMDAIAKYQDLPAHTLTSSNFKQVYRKGATLPNG----HELIKVLYTLGDMDQADYDRLS 277 Query: 132 VAFD----AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 V + V ++K FQ RHGL G++ ++T++ + +P D R+L +N +R+ L Sbjct: 278 VVHNITNTGAVFESLKAFQKRHGLASDGIIGAATVQQLVMPYDDIARRLALNTLRVATLN 337 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + G ++ VNIP LE + G V S VIVGR R T + S I ++ NPYW +P Sbjct: 338 KHAEGRPHIWVNIPNYKLEVFDKGNVVFESKVIVGRDSRPTNLFSSAITTMVVNPYWNVP 397 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV--EEVDWNSPEPPNF--IFRQDPG 303 +I Q D++ ++ + YLK +N+ +++ + +DW + P F F+Q PG Sbjct: 398 ITIKQHDVIPKVKHNIDYLKQHNMQILNSWRDRTVISPSSIDWATVNPKTFPHEFQQGPG 457 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ K + ++HDTP LF+ R +SGCVRV DL ++++ Sbjct: 458 PRNSLGRVKFLMPNDYAIFLHDTPSRGLFSKTKRDLSSGCVRVERAYDLANYVIEYQNRG 517 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + ++++ +K V L+ + V FVY++AW D +Q R+DIYG D+ Sbjct: 518 NIPEFKQMLDAQKQKTVSLSKRIDVDFVYLTAWVDNDGKVQMREDIYGYDS 568 >gi|217973562|ref|YP_002358313.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS223] gi|217498697|gb|ACK46890.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS223] Length = 525 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 103/328 (31%), Positives = 166/328 (50%), Gaps = 15/328 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G S + + +RL GDL + + + VK FQ +HGL G++ T Sbjct: 198 LTVGMSHPLLDTIAKRLWRLGDLAIEPMTNFVYSEELVVGVKRFQQKHGLKQDGVIGKQT 257 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 L +N L N +R +++ E+K+ Y+L+N+PA + V+NG L S VIV Sbjct: 258 LYWLNQSPKASAVLLAKNTIR-QRVFERKLEPSYLLINVPAFEMFLVDNGTTVLNSKVIV 316 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 G+ RQTP+L S+I+ ++ NP W +P SI+++D++ +R++ YL + + D G+ V Sbjct: 317 GKSSRQTPLLDSQISSVVLNPSWRVPSSILRRDILPQIRRNGHYLNERQFDVYDYNGQLV 376 Query: 282 FVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 +W +F ++ Q PG NA+ K F + + Y+H T EP LFN R Sbjct: 377 QHMPEEWQDLASTSFPYQLVQRPGAKNALGKYKFHFDNSFSVYLHGTSEPSLFNKDDRAL 436 Query: 340 TSGCVRVRNIIDLDVW----LLKDTPTWSRYHIEEVVKTRKTTP--VKLATEVPVHFVYI 393 +SGC+R+ + +L W L+KD W + + T P L+ ++PVH VY Sbjct: 437 SSGCIRIEKVTELAQWFKEHLVKDKRLWDK------LAPDVTEPQWFSLSQKLPVHLVYW 490 Query: 394 SAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 +AW Q+R DIY L+ +P Sbjct: 491 TAWLDDSGQEQYRSDIYHLEAELTNTVP 518 >gi|327393347|dbj|BAK10769.1| cell wall degradation amidase protein YcbB [Pantoea ananatis AJ13355] Length = 610 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 149/281 (53%), Gaps = 8/281 (2%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 +AVK FQ GLD G + T E +NV R L +N+ R++ LL M ++VN Sbjct: 317 AAVKRFQQWQGLDADGAIGLRTREWLNVSPQQRAALLALNIQRLR-LLPDDMH-NGIMVN 374 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IP SL NG L S VIVGR DR+TP++ S +N ++ NP W +P +++++D++ + Sbjct: 375 IPNYSLNYYNNGTKVLSSRVIVGRPDRKTPLMRSALNNVVLNPPWNVPTNLVRQDIIPKV 434 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF--RQDPGKINAMASTKIE 314 +QDP YL + ++ + V +DW+ +F + RQ PG+ N++ K Sbjct: 435 KQDPTYLYKHGYTLLSGWSADSEVIDPSMIDWSMVSASSFPYRIRQAPGQTNSLGRYKFN 494 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 S + Y+HDTP LF +R +SGCVRV +L LL+D W+ I + +K Sbjct: 495 MPSSDAIYLHDTPNHNLFQRDIRALSSGCVRVNKASELAGILLQDV-GWNDARISDTLKQ 553 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 T V + +PV+ Y++AW D QFR DIY DN Sbjct: 554 GDTRYVPIRHRIPVNLYYLTAWVADDGKTQFRTDIYNYDNT 594 >gi|170726506|ref|YP_001760532.1| peptidoglycan-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|169811853|gb|ACA86437.1| Peptidoglycan-binding domain 1 protein [Shewanella woodyi ATCC 51908] Length = 461 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/318 (33%), Positives = 160/318 (50%), Gaps = 17/318 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+ + +V+ + RL GDL DP SV V + FQ RHGL G++ Sbjct: 139 LKEGDINPAVKVISRRLNWLGDLNFLDPDN--SVMTSELVRGVLN-FQRRHGLKQDGVIG 195 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 TL +N+ R L N + L +G R++LVNIPA + V+ G+V L S Sbjct: 196 PETLRWINLTPKKRAALLAENFISKSSYLS-TIGPRFLLVNIPAFEMVLVDKGQVQLESR 254 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 VIVG+ RQTP L S I+ ++ NP W +PR+++++D++ +R+D Y+ ++N + + G Sbjct: 255 VIVGKPYRQTPRLSSYISNMVLNPSWRVPRTLLRRDLLPKVRKDGAYISEHNFDVFNSAG 314 Query: 279 KEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 E+ +W + F +R Q PGK N + K F + N Y+HDT + LF Sbjct: 315 DEIVKSPEEWQTLAGGRFPYRLVQKPGKDNTLGRYKFYFKNEYNVYLHDTYDKALFEESN 374 Query: 337 RFETSGCVRVRNIIDLDVW----LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 R +SGC+RV + L W L+ D TW E KT + VH VY Sbjct: 375 RALSSGCIRVEKVESLANWLASNLVSDKQTWVDLQTER----DKTQWFAFDNFLAVHLVY 430 Query: 393 ISAWSPKDSIIQFRDDIY 410 +AW + + QFR+DIY Sbjct: 431 WTAWVDESGLAQFRNDIY 448 >gi|281178056|dbj|BAI54386.1| putative amidase [Escherichia coli SE15] Length = 615 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 105/315 (33%), Positives = 164/315 (52%), Gaps = 12/315 (3%) Query: 107 SSVSVQRLRERLI---ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 S+V+V+ +L+ + P+ + A+D + AVK FQ GL G + +T + Sbjct: 287 SAVTVETAETKLMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRD 346 Query: 164 AMNVPVDLRIRQLQVNLMRIKKL-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 +NV R L +N+ R++ L E G ++VNIPA SL +NG L S VIVG Sbjct: 347 WLNVTPAQRAGVLALNIQRLRLLPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVG 403 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 R DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + ++ Sbjct: 404 RPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREA 463 Query: 283 VE--EVDWNSPEPPN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 ++ +VDW++ N F F+Q PG N++ K S Y+HDTP LF R Sbjct: 464 IDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRA 523 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 +SGCVRV DL LL+D W+ I + +K T V + +PV+ Y++A+ Sbjct: 524 LSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVG 582 Query: 399 KDSIIQFRDDIYGLD 413 D Q+R DIY D Sbjct: 583 ADGRTQYRTDIYNYD 597 >gi|91210027|ref|YP_540013.1| hypothetical protein UTI89_C0997 [Escherichia coli UTI89] gi|117623143|ref|YP_852056.1| hypothetical protein APECO1_37 [Escherichia coli APEC O1] gi|218557830|ref|YP_002390743.1| hypothetical protein ECS88_0953 [Escherichia coli S88] gi|237707087|ref|ZP_04537568.1| YcbB [Escherichia sp. 3_2_53FAA] gi|91071601|gb|ABE06482.1| hypothetical protein YcbB [Escherichia coli UTI89] gi|115512267|gb|ABJ00342.1| YcbB [Escherichia coli APEC O1] gi|218364599|emb|CAR02285.1| putative exported enzyme [Escherichia coli S88] gi|226898297|gb|EEH84556.1| YcbB [Escherichia sp. 3_2_53FAA] gi|294493685|gb|ADE92441.1| putative peptidoglycan binding domain protein [Escherichia coli IHE3034] gi|307627648|gb|ADN71952.1| hypothetical protein UM146_12925 [Escherichia coli UM146] gi|315287548|gb|EFU46954.1| conserved hypothetical protein [Escherichia coli MS 110-3] gi|323953367|gb|EGB49233.1| ykud domain-containing protein [Escherichia coli H252] gi|323958230|gb|EGB53939.1| ykud domain-containing protein [Escherichia coli H263] Length = 615 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 105/315 (33%), Positives = 164/315 (52%), Gaps = 12/315 (3%) Query: 107 SSVSVQRLRERLI---ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 S+V+V+ +L+ + P+ + A+D + AVK FQ GL G + +T + Sbjct: 287 SAVTVETAETKLMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRD 346 Query: 164 AMNVPVDLRIRQLQVNLMRIKKL-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 +NV R L +N+ R++ L E G ++VNIPA SL +NG L S VIVG Sbjct: 347 WLNVTPAQRAGVLALNIQRLRLLPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVG 403 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 R DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + ++ Sbjct: 404 RPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREA 463 Query: 283 VE--EVDWNSPEPPN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 ++ +VDW++ N F F+Q PG N++ K S Y+HDTP LF R Sbjct: 464 IDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRA 523 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 +SGCVRV DL LL+D W+ I + +K T V + +PV+ Y++A+ Sbjct: 524 LSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVG 582 Query: 399 KDSIIQFRDDIYGLD 413 D Q+R DIY D Sbjct: 583 ADGRTQYRTDIYNYD 597 >gi|283784752|ref|YP_003364617.1| hypothetical protein ROD_09941 [Citrobacter rodentium ICC168] gi|282948206|emb|CBG87773.1| putative exported protein [Citrobacter rodentium ICC168] Length = 624 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 101/287 (35%), Positives = 154/287 (53%), Gaps = 9/287 (3%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQK 190 A+D + +AVK FQ GL G + +T MNV R L +N+ R++ L E Sbjct: 324 AAYDRELVAAVKQFQAWQGLGADGAIGPATRYWMNVTPAQRAGGLALNIQRLRLLPAELS 383 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 384 TG---IMVNIPAYSLVYYQNGSQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 440 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKIN 306 +KD++ L DP YL+ + ++ + ++ +VDW++ P N F F+Q PG N Sbjct: 441 ARKDILPKLWNDPGYLERHGYTVMRGWNSKDAIDPWQVDWSTITPSNLPFRFQQAPGAHN 500 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 ++ K S + Y+HDTP LF+ R +SGCVRV +L LL+D W+ Sbjct: 501 SLGRYKFNMPSSDAIYLHDTPNHTLFSKDARALSSGCVRVNKASELANMLLQDA-GWNDT 559 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 560 RISDALKQGNTRYVTIRQTIPVNLYYLTAFVGADGRTQYRTDIYNYD 606 >gi|83859233|ref|ZP_00952754.1| hypothetical protein OA2633_12550 [Oceanicaulis alexandrii HTCC2633] gi|83852680|gb|EAP90533.1| hypothetical protein OA2633_12550 [Oceanicaulis alexandrii HTCC2633] Length = 506 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/318 (33%), Positives = 153/318 (48%), Gaps = 7/318 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G+ V LR RL G L FD +ESAV FQ RH L G Sbjct: 159 PGEALSRGDQGPRVDALRARLAQLGLLAGPVAAGAPFDGRLESAVMRFQTRHNLAADGEA 218 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 STL +N RI Q++ NL R + L ++G R++ VNI LEA ENG V Sbjct: 219 GPSTLSELNAGDARRINQIRANLERWR-WLPAELGERHIRVNIADYRLEAWENGVVARTH 277 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-E 276 ++G+ +TP+ ++ I NPYW+ P + Q+ + R +P Y ++D + Sbjct: 278 ETMIGQRYSRTPVFSEDMSIIEINPYWLTPSGLGQR-WLRTFRTNPAYALSQGYRLVDLD 336 Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 G V + DW S + Q PG NAM K F + +N Y+HDTP LF N Sbjct: 337 TGARVDPYQADWASR---RYRVIQAPGPNNAMGRVKFLFPNVHNVYIHDTPHRELFANAQ 393 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R ++SGCVRV + +L +W+L WS + E + T ++L VPVH +Y +A Sbjct: 394 RDDSSGCVRVEHPEELAIWILS-AEGWSAQAVREAFDSGDTRRIRLRHVVPVHILYFTAV 452 Query: 397 SPKDSIIQFRDDIYGLDN 414 S + ++F D+Y D Sbjct: 453 SDEMGRVRFIHDVYDRDE 470 >gi|188534256|ref|YP_001908053.1| hypothetical protein ETA_21290 [Erwinia tasmaniensis Et1/99] gi|188029298|emb|CAO97175.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99] Length = 612 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 106/307 (34%), Positives = 158/307 (51%), Gaps = 17/307 (5%) Query: 121 SGDLDPSKGLSV------AFDAYVES---AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 SG+ + G++V A + Y A+K FQ GL+ G + T E +NV Sbjct: 291 SGNATAANGVNVQAALGNAANTYTPQLVEALKRFQRWQGLEADGAIGQRTREWLNVSPQQ 350 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 R L +N+ R++ LL M ++VNIP SL NG+ L S VIVGR DR+TP++ Sbjct: 351 RATLLALNIQRLR-LLPDDMH-NGIMVNIPNYSLAYYVNGREILASRVIVGRPDRKTPLM 408 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE---VDW 288 S +N ++ NP W +P ++I+KD++ ++QDP YL + ++ E V + +DW Sbjct: 409 RSALNNVVLNPPWNVPTTLIRKDIVPKVKQDPAYLYKHGYTLLSGWSSEAQVVDPSMIDW 468 Query: 289 NSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + +F + RQ PG N++ K S + Y+HDTP LF +R +SGCVRV Sbjct: 469 SMVSAASFPYRIRQAPGPTNSLGRYKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRV 528 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 DL LL+D W+ I +K T V + +PV+ Y++AW D QFR Sbjct: 529 NRASDLANLLLRDV-GWNDTRISSTLKEGDTRFVSIRHRIPVNLYYLTAWVADDGQPQFR 587 Query: 407 DDIYGLD 413 DIY D Sbjct: 588 TDIYNYD 594 >gi|296103072|ref|YP_003613218.1| hypothetical protein ECL_02728 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057531|gb|ADF62269.1| hypothetical protein ECL_02728 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 607 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 156/286 (54%), Gaps = 7/286 (2%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 A+D + +AVK FQ GL G++ ST + +NV R L +N+ R++ LL + Sbjct: 307 AAYDRELVAAVKQFQAAQGLGADGVIGPSTRDWLNVSPAQRAGVLALNIQRLR-LLPGTL 365 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 366 STG-IMVNIPAYSLVYYQNGSEVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 424 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ +N +I + ++ VDW++ P N F F+Q PG N+ Sbjct: 425 RKDILPKVWNDPGYLERHNYTVIRGWNSKETIDPWMVDWSTITPSNLPFRFQQAPGAHNS 484 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 485 LGRYKFNMPSSDAIYLHDTPNHNLFQKDARALSSGCVRVNKASELANMLLQDA-GWNDTR 543 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ +D Q+R DIY D Sbjct: 544 ISDALKQGDTRYVNIRHNIPVNLYYLTAFVGEDGRTQYRTDIYNYD 589 >gi|218700556|ref|YP_002408185.1| hypothetical protein ECIAI39_2222 [Escherichia coli IAI39] gi|218370542|emb|CAR18349.1| putative exported enzyme [Escherichia coli IAI39] Length = 615 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNNREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTCYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|24112334|ref|NP_706844.1| hypothetical protein SF0922 [Shigella flexneri 2a str. 301] gi|24051196|gb|AAN42551.1| putative amidase [Shigella flexneri 2a str. 301] gi|332759013|gb|EGJ89323.1| putative peptidoglycan binding domain protein [Shigella flexneri 4343-70] gi|332760103|gb|EGJ90401.1| putative peptidoglycan binding domain protein [Shigella flexneri 2747-71] gi|332767712|gb|EGJ97903.1| L,D-transpeptidase YcbB [Shigella flexneri 2930-71] gi|333006182|gb|EGK25691.1| putative peptidoglycan binding domain protein [Shigella flexneri K-218] Length = 615 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 102/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLLYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ EVDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWEVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADDRTQYRTDIYNYD 597 >gi|330809814|ref|YP_004354276.1| hypothetical protein PSEBR_a2969 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377922|gb|AEA69272.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 520 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 101/322 (31%), Positives = 162/322 (50%), Gaps = 8/322 (2%) Query: 94 WPELPIRPL-HLGNSSVSVQRLRERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGL 151 W +P PL V L +RL G L P + + A+K FQ++H L Sbjct: 194 WQPVPGGPLLQPDKQDARVPALAQRLFNEGYLSTPPLVTDEHYSPTLVEAMKSFQLQHSL 253 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 G+V T+ +N+ +R QL++NL R++ L Q + VLVN+ AA L G Sbjct: 254 QADGVVGPWTVTELNISPAMRREQLRINLERMR-WLAQDVENDSVLVNVAAAQLTVYRGG 312 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 + ++ VGR RQTP+L S + R+ NP W IP +I+++D + +R+DP++L +N+ Sbjct: 313 EPIWQTRTQVGRAQRQTPLLKSHVTRLTLNPTWTIPPTIMREDKLPEIRRDPEFLARHNL 372 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 ++D +G + E++DW P N + RQDPG N + I F + + Y+HDTP L Sbjct: 373 RILDSEGLPLMAEDIDWEHPG--NLMLRQDPGPKNPLGKMAIRFPNPFSVYLHDTPSQAL 430 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 F+ R +SGCVR+ ++ L L+ R + ++ + T +LA VP+ Sbjct: 431 FSKGPRAFSSGCVRIEQVMHLRDLLVSPA---ERARTDTLLASETTHEFRLARPVPILLG 487 Query: 392 YISAWSPKDSIIQFRDDIYGLD 413 Y +A + + DIY D Sbjct: 488 YWTAQADSQGQPLYIPDIYARD 509 >gi|30062460|ref|NP_836631.1| hypothetical protein S0986 [Shigella flexneri 2a str. 2457T] gi|30040706|gb|AAP16437.1| putative amidase [Shigella flexneri 2a str. 2457T] gi|281600285|gb|ADA73269.1| putative amidase [Shigella flexneri 2002017] gi|332762697|gb|EGJ92960.1| putative peptidoglycan binding domain protein [Shigella flexneri K-671] gi|333020100|gb|EGK39371.1| putative peptidoglycan binding domain protein [Shigella flexneri K-304] Length = 615 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 102/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLLYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ EVDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWEVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADDRTQYRTDIYNYD 597 >gi|313650833|gb|EFS15234.1| putative peptidoglycan binding domain protein [Shigella flexneri 2a str. 2457T] Length = 611 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 102/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 305 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 364 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 365 LPTELSTG---IMVNIPAYSLLYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 421 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ EVDW++ N F F+Q Sbjct: 422 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWEVDWSTITASNLPFRFQQ 481 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 482 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 541 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 542 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADDRTQYRTDIYNYD 593 >gi|312971055|ref|ZP_07785234.1| cell wall degradation protein [Escherichia coli 1827-70] gi|310336816|gb|EFQ01983.1| cell wall degradation protein [Escherichia coli 1827-70] gi|323165398|gb|EFZ51185.1| cell wall degradation protein [Shigella sonnei 53G] Length = 317 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 11 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 70 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 71 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 127 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 128 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 187 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 188 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 247 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 248 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 299 >gi|238789300|ref|ZP_04633087.1| Peptidoglycan-binding domain 1 protein [Yersinia frederiksenii ATCC 33641] gi|238722632|gb|EEQ14285.1| Peptidoglycan-binding domain 1 protein [Yersinia frederiksenii ATCC 33641] Length = 625 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 98/278 (35%), Positives = 148/278 (53%), Gaps = 8/278 (2%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ HGL G++ T E +NV R L +N+ R++ +L ++ ++VNI Sbjct: 333 AVKRFQQWHGLSDDGVIGIRTREWLNVTPQTRATLLALNIQRLR-ILPGRVD-NGIMVNI 390 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P SL +NG L S VIVGR R+TP++ S +N ++ NP W +P S+I++D++ R Sbjct: 391 PNYSLNYYKNGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSLIRQDIVPKAR 450 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEE---VDWNSPEPPNFIF--RQDPGKINAMASTKIEF 315 D Y + + ++ + V + ++WN P NF + RQ+PG N++ K Sbjct: 451 YDSSYFQRHGYTVLSGWSNDAEVVDPSMINWNMISPNNFPYRLRQEPGASNSLGRFKFNM 510 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 S + Y+HDTP LF +R +SGCVRV DL LL+D W+ + +K Sbjct: 511 PSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWNDARVSSTLKQG 569 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 TT V + +PV Y++AW +D QFR DIY D Sbjct: 570 NTTYVNIRQRIPVQLYYLTAWVAEDGKPQFRTDIYNYD 607 >gi|73537776|ref|YP_298143.1| hypothetical protein Reut_B3942 [Ralstonia eutropha JMP134] gi|72121113|gb|AAZ63299.1| conserved hypothetical protein [Ralstonia eutropha JMP134] Length = 557 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 102/346 (29%), Positives = 166/346 (47%), Gaps = 14/346 (4%) Query: 81 AIAFYQDILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 A+A Y+ + ++ GW P LP L G + + + RL GD+ + Sbjct: 172 ALAHYRTLAAQPGWDRTLPALPGGKLTSGQAYSGLAEMARRLQALGDMPADAPAPKRYSG 231 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK--KLLEQKMGLR 194 V VK FQ RHGL+ G++ + TL +N R+RQ+++ + R++ L + R Sbjct: 232 AVVDGVKAFQARHGLEADGVIGAGTLAQLNTTPAARVRQIELTMERLRWTPLTDSP---R 288 Query: 195 YVLVNIPAASLEAVE--NGK--VGLRSTVIVGR-VDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIP L A + GK + L VIVG+ +D +TP+ + I F+PYW +P S Sbjct: 289 MIVVNIPEFMLRAYDYNGGKLDIKLEMKVIVGKALDTRTPLFKEDMRYIEFSPYWNVPPS 348 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I + + + LR+DP Y + + + + ++ RQ PG +NA+ Sbjct: 349 IARSETIPRLRRDPAYFTQQGFEFVSNGKAVTTLSDANLDAVLNGRMRIRQRPGPMNALG 408 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F + N Y+H TP P LF R + GC+RV + L ++L+D P W+ I Sbjct: 409 DIKFVFPNNQNIYLHHTPTPQLFKRDRRDFSHGCIRVEEPVALAKFVLQDMPGWTEERIR 468 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + + ++ V L +PV Y +A + D + F DIYG D + Sbjct: 469 QAMTKGQSNTVALQQPLPVVLAYGTAIARADGRVYFLPDIYGQDKL 514 >gi|209694858|ref|YP_002262786.1| hypothetical protein VSAL_I1327 [Aliivibrio salmonicida LFI1238] gi|208008809|emb|CAQ79012.1| putative exported protein [Aliivibrio salmonicida LFI1238] Length = 512 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 106/333 (31%), Positives = 177/333 (53%), Gaps = 21/333 (6%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAY---VESAVKLFQMR 148 P+L L N + + L RL ISG+L+ + LS D Y + + VK FQ R Sbjct: 180 PKLYSSRLLKPNQDIPYKSLVYRLQISGELNEEQIHYFLSQEGDKYNNELVNVVKSFQKR 239 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL G+V TL +N+ + R+R + +N+ R++ L + R+VLVNIP+ + Sbjct: 240 HGLVVDGIVGKRTLYWLNMSANERVRIMALNIQRLR--LWENKNARFVLVNIPSYEMGYW 297 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 G++ +S VIVG+ +R+TP+ +R++ I+FNP W +P I+++D++ ++ YL Sbjct: 298 LKGELVFKSKVIVGKPERKTPLFTTRLDSIVFNPNWKVPTKIMKEDILPKALENQDYLLT 357 Query: 269 NNIHMIDEKGKEVFV--EEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMH 324 +N ++ + + E ++W + NF + RQ G NA+ K +RN Y+H Sbjct: 358 HNYEVLPSWLSDEVIPFESIEWETMTVDNFPYKLRQKSGNANALGRYKFNTPNRNAIYLH 417 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT----PTWSRYHIEEVVKTRKTTPV 380 DTP LFN R +SGC+RV + L+K++ ++ YH + KT V Sbjct: 418 DTPSRSLFNKQHRAYSSGCIRVEKASEFAQLLMKESHFTAKDYAGYH-----RLPKTNTV 472 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L+ ++ V+ +Y +AW + IQFR+D+Y D Sbjct: 473 GLSQKIAVYTIYQTAWVDEADTIQFRNDVYRYD 505 >gi|238763355|ref|ZP_04624319.1| Peptidoglycan-binding domain 1 protein [Yersinia kristensenii ATCC 33638] gi|238698454|gb|EEP91207.1| Peptidoglycan-binding domain 1 protein [Yersinia kristensenii ATCC 33638] Length = 624 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 148/278 (53%), Gaps = 8/278 (2%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ HGL G++ + T E +NV R L +N+ R++ +L ++ ++VNI Sbjct: 332 AVKRFQQWHGLSEDGVIGARTREWLNVSPQTRATLLALNIQRLR-ILPGRVD-NGIMVNI 389 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P SL +NG L S VIVGR R+TP++ S +N ++ NP W +P S++++D++ R Sbjct: 390 PNYSLNYYKNGSEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSLVRQDIVPKAR 449 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEE---VDWNSPEPPNFIF--RQDPGKINAMASTKIEF 315 D Y + + ++ + V + +DW+ P NF + RQ PG N++ K Sbjct: 450 YDSSYFQRHGYTVLSGWSNDAQVVDPSMIDWSMISPNNFPYRLRQAPGASNSLGRFKFNM 509 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 S + Y+HDTP LF +R +SGCVRV DL LL+D W+ + +K Sbjct: 510 PSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWNDARVSSTLKQG 568 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 TT V + +PV Y++AW +D QFR DIY D Sbjct: 569 DTTYVNIRQRIPVQLYYLTAWVAEDGKPQFRTDIYNYD 606 >gi|310767192|gb|ADP12142.1| hypothetical protein EJP617_24610 [Erwinia sp. Ejp617] Length = 615 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 151/280 (53%), Gaps = 8/280 (2%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 A+K FQ GL+ G + + T E +NV R L +N+ R++ LL M ++VNI Sbjct: 323 ALKRFQRWQGLEADGAIGTRTREWLNVSPQQRATLLALNIQRLR-LLPDDMQ-NGIMVNI 380 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P SL NG+ L S VIVGR DR+TP++ S +N ++ NP W +P ++++KD++ ++ Sbjct: 381 PNYSLAYYVNGREILSSRVIVGRPDRKTPLMRSALNNVVLNPPWNVPTTLVRKDIVPKVK 440 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEE---VDWNSPEPPNFIF--RQDPGKINAMASTKIEF 315 +DP YL + ++ E V + ++W++ +F + RQ PG N++ K Sbjct: 441 RDPMYLYKHGYTLLAGWSNEAEVVDPSMINWSTVSAASFPYRIRQAPGATNSLGRYKFNM 500 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 S + Y+HDTP LF +R +SGCVRV DL LL+D W+ I +K Sbjct: 501 PSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNRASDLANLLLRDV-GWNDARISGTLKEG 559 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 T V + +PV+ Y++AW +D Q+R DIY DN Sbjct: 560 NTRFVPIRQRIPVNLYYLTAWVAEDGQPQYRTDIYNYDNT 599 >gi|157146384|ref|YP_001453703.1| hypothetical protein CKO_02143 [Citrobacter koseri ATCC BAA-895] gi|157083589|gb|ABV13267.1| hypothetical protein CKO_02143 [Citrobacter koseri ATCC BAA-895] Length = 620 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 104/292 (35%), Positives = 155/292 (53%), Gaps = 7/292 (2%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G V +T E +NV R L +N+ R++ Sbjct: 314 PAPAVRAAYDRELVDAVKRFQTWQGLGADGAVGPATREWLNVTPAQRAGVLALNIQRLR- 372 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 LL ++ ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 373 LLPGELSTG-IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWN 431 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIH-MIDEKGKEVFVE-EVDWNSPEPPN--FIFRQD 301 +P ++ +KD++ + DP YL+ + M KE +VDW++ P N F F+Q Sbjct: 432 VPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKETINPWQVDWSTITPSNLPFRFQQA 491 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG N++ K S + Y+HDTP LF R +SGCVRV +L LL+D Sbjct: 492 PGAHNSLGRYKFNMPSSDAIYLHDTPNHNLFQKDTRALSSGCVRVNKASELANMLLQDA- 550 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 551 GWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRTQYRTDIYNYD 602 >gi|258546017|ref|ZP_05706251.1| peptidoglycan binding protein [Cardiobacterium hominis ATCC 15826] gi|258518746|gb|EEV87605.1| peptidoglycan binding protein [Cardiobacterium hominis ATCC 15826] Length = 599 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 103/324 (31%), Positives = 160/324 (49%), Gaps = 13/324 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 LP L G + +V LRE+L + G S FD + AV +Q HGL G+ Sbjct: 274 LPKVTLKQGMNHEAVAILREKLGAPA----TDGDSTYFDGALAEAVTAYQQSHGLKADGI 329 Query: 157 VDSSTLEAMN-----VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 V T +N + + +L +N+ R++ + Q MG YVLVNIP+ ++ Sbjct: 330 VSGKTRNLLNGNKASSGGNASVDRLMINMERLR-WMPQDMGESYVLVNIPSYYVKMYRGS 388 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 + S +VG+ DRQTP ++ I+ +P W +P +I++KD + LR +P D + Sbjct: 389 EEIYASKAVVGQRDRQTPAFTDKLRHIVMSPTWTVPPTIMKKDKINKLRSNPGAF-DGSF 447 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 + G+ V VDW++P + RQ PG NA+ K F +++ Y+HDTP L Sbjct: 448 EAV-VGGRVVRPSAVDWSAPGATGYRLRQKPGARNALGRVKFLFPNKHAIYLHDTPSKSL 506 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 F R +SGCVR++ + LL++T WS I++ + K V + P++ V Sbjct: 507 FGRNDRALSSGCVRLQKPEEFANILLQNT-NWSAERIKKAMNQEKEQWVNTPEQTPIYLV 565 Query: 392 YISAWSPKDSIIQFRDDIYGLDNV 415 Y + WS D IQ +DIYG D Sbjct: 566 YWTTWSDPDGKIQTANDIYGKDGA 589 >gi|187731093|ref|YP_001880874.1| hypothetical protein SbBS512_E2393 [Shigella boydii CDC 3083-94] gi|187428085|gb|ACD07359.1| putative peptidoglycan binding domain [Shigella boydii CDC 3083-94] Length = 615 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|300937730|ref|ZP_07152531.1| conserved hypothetical protein [Escherichia coli MS 21-1] gi|300457237|gb|EFK20730.1| conserved hypothetical protein [Escherichia coli MS 21-1] Length = 615 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNNREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|74311483|ref|YP_309902.1| hypothetical protein SSON_0928 [Shigella sonnei Ss046] gi|73854960|gb|AAZ87667.1| putative amidase [Shigella sonnei Ss046] Length = 615 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|309795089|ref|ZP_07689509.1| conserved hypothetical protein [Escherichia coli MS 145-7] gi|308121393|gb|EFO58655.1| conserved hypothetical protein [Escherichia coli MS 145-7] Length = 615 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|291281926|ref|YP_003498744.1| putative peptidoglycan binding domain protein [Escherichia coli O55:H7 str. CB9615] gi|209774748|gb|ACI85686.1| putative amidase [Escherichia coli] gi|209774754|gb|ACI85689.1| putative amidase [Escherichia coli] gi|290761799|gb|ADD55760.1| Putative peptidoglycan binding domain protein [Escherichia coli O55:H7 str. CB9615] gi|320642918|gb|EFX12119.1| murein L,D-transpeptidase [Escherichia coli O157:H- str. 493-89] gi|320648375|gb|EFX17030.1| murein L,D-transpeptidase [Escherichia coli O157:H- str. H 2687] gi|320653691|gb|EFX21765.1| murein L,D-transpeptidase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659836|gb|EFX27392.1| murein L,D-transpeptidase [Escherichia coli O55:H7 str. USDA 5905] gi|320664305|gb|EFX31456.1| murein L,D-transpeptidase [Escherichia coli O157:H7 str. LSU-61] Length = 615 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|82544667|ref|YP_408614.1| hypothetical protein SBO_2216 [Shigella boydii Sb227] gi|191166981|ref|ZP_03028804.1| putative peptidoglycan binding domain [Escherichia coli B7A] gi|193064628|ref|ZP_03045707.1| putative peptidoglycan binding domain [Escherichia coli E22] gi|193070734|ref|ZP_03051669.1| putative peptidoglycan binding domain [Escherichia coli E110019] gi|194428336|ref|ZP_03060877.1| putative peptidoglycan binding domain protein [Escherichia coli B171] gi|209918175|ref|YP_002292259.1| hypothetical protein ECSE_0984 [Escherichia coli SE11] gi|218553512|ref|YP_002386425.1| hypothetical protein ECIAI1_0966 [Escherichia coli IAI1] gi|218694399|ref|YP_002402066.1| hypothetical protein EC55989_0971 [Escherichia coli 55989] gi|260843174|ref|YP_003220952.1| putative carboxypeptidase [Escherichia coli O103:H2 str. 12009] gi|260854216|ref|YP_003228107.1| putative carboxypeptidase [Escherichia coli O26:H11 str. 11368] gi|293433222|ref|ZP_06661650.1| hypothetical protein ECCG_01347 [Escherichia coli B088] gi|300816970|ref|ZP_07097189.1| conserved hypothetical protein [Escherichia coli MS 107-1] gi|300823665|ref|ZP_07103792.1| conserved hypothetical protein [Escherichia coli MS 119-7] gi|300902916|ref|ZP_07120861.1| hypothetical protein HMPREF9536_01061 [Escherichia coli MS 84-1] gi|300921037|ref|ZP_07137424.1| conserved hypothetical protein [Escherichia coli MS 115-1] gi|301302465|ref|ZP_07208596.1| hypothetical protein HMPREF9347_01042 [Escherichia coli MS 124-1] gi|307311688|ref|ZP_07591328.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli W] gi|331667303|ref|ZP_08368168.1| putative amidase [Escherichia coli TA271] gi|331676713|ref|ZP_08377409.1| putative amidase [Escherichia coli H591] gi|81246078|gb|ABB66786.1| putative amidase [Shigella boydii Sb227] gi|190902975|gb|EDV62701.1| putative peptidoglycan binding domain [Escherichia coli B7A] gi|192927685|gb|EDV82300.1| putative peptidoglycan binding domain [Escherichia coli E22] gi|192955927|gb|EDV86395.1| putative peptidoglycan binding domain [Escherichia coli E110019] gi|194413551|gb|EDX29832.1| putative peptidoglycan binding domain protein [Escherichia coli B171] gi|209911434|dbj|BAG76508.1| putative amidase [Escherichia coli SE11] gi|218351131|emb|CAU96835.1| putative exported enzyme [Escherichia coli 55989] gi|218360280|emb|CAQ97830.1| putative exported enzyme [Escherichia coli IAI1] gi|257752865|dbj|BAI24367.1| predicted carboxypeptidase [Escherichia coli O26:H11 str. 11368] gi|257758321|dbj|BAI29818.1| predicted carboxypeptidase [Escherichia coli O103:H2 str. 12009] gi|291324041|gb|EFE63463.1| hypothetical protein ECCG_01347 [Escherichia coli B088] gi|300405058|gb|EFJ88596.1| hypothetical protein HMPREF9536_01061 [Escherichia coli MS 84-1] gi|300412028|gb|EFJ95338.1| conserved hypothetical protein [Escherichia coli MS 115-1] gi|300523865|gb|EFK44934.1| conserved hypothetical protein [Escherichia coli MS 119-7] gi|300530322|gb|EFK51384.1| conserved hypothetical protein [Escherichia coli MS 107-1] gi|300842304|gb|EFK70064.1| hypothetical protein HMPREF9347_01042 [Escherichia coli MS 124-1] gi|306908243|gb|EFN38742.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli W] gi|315060210|gb|ADT74537.1| murein L,D-transpeptidase [Escherichia coli W] gi|315257966|gb|EFU37934.1| putative amidase [Escherichia coli MS 85-1] gi|320183824|gb|EFW58657.1| L,D-transpeptidase YcbB [Shigella flexneri CDC 796-83] gi|323157188|gb|EFZ43311.1| putative peptidoglycan binding domain protein [Escherichia coli EPECa14] gi|323159552|gb|EFZ45532.1| putative peptidoglycan binding domain protein [Escherichia coli E128010] gi|323379230|gb|ADX51498.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli KO11] gi|323947286|gb|EGB43294.1| ykud domain-containing protein [Escherichia coli H120] gi|324117210|gb|EGC11118.1| ykud domain-containing protein [Escherichia coli E1167] gi|331065659|gb|EGI37552.1| putative amidase [Escherichia coli TA271] gi|331075402|gb|EGI46700.1| putative amidase [Escherichia coli H591] gi|332093526|gb|EGI98584.1| putative peptidoglycan binding domain protein [Shigella boydii 3594-74] Length = 615 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|157160446|ref|YP_001457764.1| hypothetical protein EcHS_A1032 [Escherichia coli HS] gi|170020673|ref|YP_001725627.1| hypothetical protein EcolC_2671 [Escherichia coli ATCC 8739] gi|188494298|ref|ZP_03001568.1| putative peptidoglycan binding domain [Escherichia coli 53638] gi|194438718|ref|ZP_03070805.1| putative peptidoglycan binding domain protein [Escherichia coli 101-1] gi|253774046|ref|YP_003036877.1| hypothetical protein ECBD_2670 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161039|ref|YP_003044147.1| hypothetical protein ECB_00929 [Escherichia coli B str. REL606] gi|256023374|ref|ZP_05437239.1| hypothetical protein E4_08369 [Escherichia sp. 4_1_40B] gi|297521034|ref|ZP_06939420.1| hypothetical protein EcolOP_25597 [Escherichia coli OP50] gi|300929620|ref|ZP_07145082.1| conserved hypothetical protein [Escherichia coli MS 187-1] gi|300949712|ref|ZP_07163691.1| conserved hypothetical protein [Escherichia coli MS 116-1] gi|300955427|ref|ZP_07167801.1| hypothetical protein HMPREF9547_01312 [Escherichia coli MS 175-1] gi|301022419|ref|ZP_07186302.1| conserved hypothetical protein [Escherichia coli MS 196-1] gi|301643445|ref|ZP_07243493.1| conserved hypothetical protein [Escherichia coli MS 146-1] gi|307137554|ref|ZP_07496910.1| hypothetical protein EcolH7_05406 [Escherichia coli H736] gi|331641451|ref|ZP_08342586.1| putative amidase [Escherichia coli H736] gi|157066126|gb|ABV05381.1| putative peptidoglycan binding domain [Escherichia coli HS] gi|169755601|gb|ACA78300.1| Peptidoglycan-binding domain 1 protein [Escherichia coli ATCC 8739] gi|188489497|gb|EDU64600.1| putative peptidoglycan binding domain [Escherichia coli 53638] gi|194422350|gb|EDX38350.1| putative peptidoglycan binding domain protein [Escherichia coli 101-1] gi|242376740|emb|CAQ31453.1| L,D-transpeptidase YcbB [Escherichia coli BL21(DE3)] gi|253325090|gb|ACT29692.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972940|gb|ACT38611.1| predicted carboxypeptidase [Escherichia coli B str. REL606] gi|253977154|gb|ACT42824.1| predicted carboxypeptidase [Escherichia coli BL21(DE3)] gi|299881260|gb|EFI89471.1| conserved hypothetical protein [Escherichia coli MS 196-1] gi|300317650|gb|EFJ67434.1| hypothetical protein HMPREF9547_01312 [Escherichia coli MS 175-1] gi|300450893|gb|EFK14513.1| conserved hypothetical protein [Escherichia coli MS 116-1] gi|300462457|gb|EFK25950.1| conserved hypothetical protein [Escherichia coli MS 187-1] gi|301078159|gb|EFK92965.1| conserved hypothetical protein [Escherichia coli MS 146-1] gi|315619119|gb|EFU99699.1| putative peptidoglycan binding domain protein [Escherichia coli 3431] gi|323938031|gb|EGB34293.1| ykud domain-containing protein [Escherichia coli E1520] gi|323942841|gb|EGB39006.1| ykud domain-containing protein [Escherichia coli E482] gi|323962917|gb|EGB58491.1| ykud domain-containing protein [Escherichia coli H489] gi|331038249|gb|EGI10469.1| putative amidase [Escherichia coli H736] gi|332342367|gb|AEE55701.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 615 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|170683737|ref|YP_001744245.1| hypothetical protein EcSMS35_2195 [Escherichia coli SMS-3-5] gi|170521455|gb|ACB19633.1| putative peptidoglycan binding domain [Escherichia coli SMS-3-5] Length = 615 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|157157051|ref|YP_001462144.1| hypothetical protein EcE24377A_1024 [Escherichia coli E24377A] gi|256020947|ref|ZP_05434812.1| hypothetical protein ShiD9_18662 [Shigella sp. D9] gi|301326639|ref|ZP_07219969.1| conserved hypothetical protein [Escherichia coli MS 78-1] gi|332282170|ref|ZP_08394583.1| conserved hypothetical protein [Shigella sp. D9] gi|157079081|gb|ABV18789.1| putative peptidoglycan binding domain [Escherichia coli E24377A] gi|300846684|gb|EFK74444.1| conserved hypothetical protein [Escherichia coli MS 78-1] gi|332104522|gb|EGJ07868.1| conserved hypothetical protein [Shigella sp. D9] Length = 615 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|320202321|gb|EFW76892.1| L,D-transpeptidase YcbB [Escherichia coli EC4100B] Length = 615 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|301023047|ref|ZP_07186856.1| conserved hypothetical protein [Escherichia coli MS 69-1] gi|300397253|gb|EFJ80791.1| conserved hypothetical protein [Escherichia coli MS 69-1] Length = 615 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|218704353|ref|YP_002411872.1| hypothetical protein ECUMN_1119 [Escherichia coli UMN026] gi|293404229|ref|ZP_06648223.1| hypothetical protein ECGG_02618 [Escherichia coli FVEC1412] gi|298380010|ref|ZP_06989615.1| hypothetical protein ECFG_02813 [Escherichia coli FVEC1302] gi|300901645|ref|ZP_07119705.1| conserved hypothetical protein [Escherichia coli MS 198-1] gi|218431450|emb|CAR12328.1| putative exported enzyme [Escherichia coli UMN026] gi|291428815|gb|EFF01840.1| hypothetical protein ECGG_02618 [Escherichia coli FVEC1412] gi|298279708|gb|EFI21216.1| hypothetical protein ECFG_02813 [Escherichia coli FVEC1302] gi|300354938|gb|EFJ70808.1| conserved hypothetical protein [Escherichia coli MS 198-1] Length = 615 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|15800786|ref|NP_286800.1| hypothetical protein Z1272 [Escherichia coli O157:H7 EDL933] gi|15830262|ref|NP_309035.1| hypothetical protein ECs1008 [Escherichia coli O157:H7 str. Sakai] gi|168751189|ref|ZP_02776211.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4113] gi|168757018|ref|ZP_02782025.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4401] gi|168762937|ref|ZP_02787944.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4501] gi|168769921|ref|ZP_02794928.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4486] gi|168787355|ref|ZP_02812362.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC869] gi|195939660|ref|ZP_03085042.1| hypothetical protein EscherichcoliO157_25185 [Escherichia coli O157:H7 str. EC4024] gi|208822650|ref|ZP_03262969.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4042] gi|217326231|ref|ZP_03442315.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. TW14588] gi|254792124|ref|YP_003076961.1| hypothetical protein ECSP_1029 [Escherichia coli O157:H7 str. TW14359] gi|261227428|ref|ZP_05941709.1| predicted carboxypeptidase [Escherichia coli O157:H7 str. FRIK2000] gi|261256149|ref|ZP_05948682.1| predicted carboxypeptidase [Escherichia coli O157:H7 str. FRIK966] gi|12514097|gb|AAG55410.1|AE005282_5 putative amidase [Escherichia coli O157:H7 str. EDL933] gi|13360467|dbj|BAB34431.1| putative amidase [Escherichia coli O157:H7 str. Sakai] gi|188014739|gb|EDU52861.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4113] gi|189355931|gb|EDU74350.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4401] gi|189361134|gb|EDU79553.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4486] gi|189366781|gb|EDU85197.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4501] gi|189372669|gb|EDU91085.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC869] gi|208738135|gb|EDZ85818.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4042] gi|209774750|gb|ACI85687.1| putative amidase [Escherichia coli] gi|209774752|gb|ACI85688.1| putative amidase [Escherichia coli] gi|209774756|gb|ACI85690.1| putative amidase [Escherichia coli] gi|217322452|gb|EEC30876.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. TW14588] gi|254591524|gb|ACT70885.1| predicted carboxypeptidase [Escherichia coli O157:H7 str. TW14359] gi|320637793|gb|EFX07585.1| murein L,D-transpeptidase [Escherichia coli O157:H7 str. G5101] gi|326338180|gb|EGD62009.1| L,D-transpeptidase YcbB [Escherichia coli O157:H7 str. 1125] Length = 615 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|16128892|ref|NP_415445.1| murein L,D-transpeptidase [Escherichia coli str. K-12 substr. MG1655] gi|89107775|ref|AP_001555.1| predicted carboxypeptidase [Escherichia coli str. K-12 substr. W3110] gi|170080583|ref|YP_001729903.1| carboxypeptidase [Escherichia coli str. K-12 substr. DH10B] gi|238900183|ref|YP_002925979.1| putative carboxypeptidase [Escherichia coli BW2952] gi|2506630|sp|P22525|YCBB_ECOLI RecName: Full=Probable L,D-transpeptidase YcbB gi|1787155|gb|AAC74011.1| murein L,D-transpeptidase [Escherichia coli str. K-12 substr. MG1655] gi|4062492|dbj|BAA35671.1| predicted carboxypeptidase [Escherichia coli str. K12 substr. W3110] gi|169888418|gb|ACB02125.1| predicted carboxypeptidase [Escherichia coli str. K-12 substr. DH10B] gi|238862186|gb|ACR64184.1| predicted carboxypeptidase [Escherichia coli BW2952] gi|260449929|gb|ACX40351.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli DH1] gi|315135573|dbj|BAJ42732.1| hypothetical protein ECDH1ME8569_0876 [Escherichia coli DH1] Length = 615 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|187776221|ref|ZP_02801228.2| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4196] gi|208809460|ref|ZP_03251797.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4206] gi|208815467|ref|ZP_03256646.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4045] gi|209399966|ref|YP_002269597.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4115] gi|187768375|gb|EDU32219.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4196] gi|208729261|gb|EDZ78862.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4206] gi|208732115|gb|EDZ80803.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4045] gi|209161366|gb|ACI38799.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4115] gi|320192589|gb|EFW67230.1| L,D-transpeptidase YcbB [Escherichia coli O157:H7 str. EC1212] gi|326346157|gb|EGD69895.1| L,D-transpeptidase YcbB [Escherichia coli O157:H7 str. 1044] Length = 611 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 305 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 364 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 365 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 421 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 422 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 481 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 482 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 541 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 542 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 593 >gi|331662339|ref|ZP_08363262.1| putative amidase [Escherichia coli TA143] gi|331060761|gb|EGI32725.1| putative amidase [Escherichia coli TA143] Length = 615 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|307131496|ref|YP_003883512.1| putative carboxypeptidase [Dickeya dadantii 3937] gi|306529025|gb|ADM98955.1| predicted carboxypeptidase [Dickeya dadantii 3937] Length = 562 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 112/352 (31%), Positives = 183/352 (51%), Gaps = 29/352 (8%) Query: 94 WPEL----PIRPLHLGNSSVSVQRLRERLIISGDLD------------PSKGLS-VAFDA 136 WP+L +RP G+ S ++ L+E L+ +G L+ S +S + ++ Sbjct: 209 WPKLILADSLRP---GDESSALPVLKEILLRTGMLNQDGAAMPLFNEASSGNVSPLRYEG 265 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 V AVK FQ GL G++ T + +NV +R L +N+ R++ L+ K+ + Sbjct: 266 EVVEAVKRFQHSQGLQDDGVIGKRTRDWLNVSSQMRATLLALNIQRLR-LVPDKVS-SGI 323 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VNIP SL +NG L S VIVG+ R+TP+++S ++ ++ NP W +P ++ ++D++ Sbjct: 324 VVNIPNYSLSYYQNGAEILSSRVIVGQPKRKTPLMNSSLSNVVMNPPWNVPTTLTRQDII 383 Query: 257 ALLRQDPQYLKDNNIHMID---EKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAST 311 + QDP YL+ + ++ E + + +DW NF + RQ PG N++ Sbjct: 384 PKVIQDPGYLQRHGYTVLSDWTESAQPIDPSMIDWPMVSAGNFPYRLRQAPGDSNSLGRY 443 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K + + Y+HDTP LF +R +SGCVRV +L LL+D W+ I Sbjct: 444 KFNMPNTDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASELAALLLQDA-GWNNARISST 502 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-VHVGIIPL 422 ++ TT V + VPV+F Y++AW D QFR DIY D+ V +G + L Sbjct: 503 LEQGNTTYVAVRQRVPVNFYYLTAWVADDGKPQFRTDIYNYDDTVKIGALAL 554 >gi|323973200|gb|EGB68392.1| ykud domain-containing protein [Escherichia coli TA007] Length = 615 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|293414205|ref|ZP_06656854.1| hypothetical protein ECDG_00758 [Escherichia coli B185] gi|331651945|ref|ZP_08352964.1| putative amidase [Escherichia coli M718] gi|291434263|gb|EFF07236.1| hypothetical protein ECDG_00758 [Escherichia coli B185] gi|331050223|gb|EGI22281.1| putative amidase [Escherichia coli M718] Length = 615 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|269102554|ref|ZP_06155251.1| hypothetical amidase [Photobacterium damselae subsp. damselae CIP 102761] gi|268162452|gb|EEZ40948.1| hypothetical amidase [Photobacterium damselae subsp. damselae CIP 102761] Length = 588 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 100/302 (33%), Positives = 157/302 (51%), Gaps = 10/302 (3%) Query: 122 GDLDPSK------GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 GDLD + S++ + A+K FQ R+GL G++ ST + + +P R+ Sbjct: 266 GDLDQANYDKLMAAKSISNTGVMNDAIKHFQKRYGLSADGIIGKSTAQQLAIPYGELARR 325 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 L +N+ R + ++LVNIP L+ ENGKV S VIVGR R T + S I Sbjct: 326 LALNMQRANVIAPFAKDKAHILVNIPDYMLKVYENGKVVFDSKVIVGRESRPTNLFSSSI 385 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE--KGKEVFVEEVDWNSPEP 293 N ++ NPYW +P +I QKD++ +++P YL +NI +I+ E+ V ++W++ P Sbjct: 386 NTMVVNPYWNVPITIKQKDVIPKAKRNPGYLAAHNIKVINSWRDRTEIPVSSINWSAVNP 445 Query: 294 PNF--IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 +F F+Q PG N++ K + ++HDTP LF+ R +SGCVRV D Sbjct: 446 KSFPHEFQQGPGPHNSLGMVKFLMPNDYAIFLHDTPARGLFSKTKRDLSSGCVRVARAHD 505 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L ++L S + + K + V L+ + V FVY++ W +D +Q R+DIY Sbjct: 506 LADFVLDYQNRPSMRTFDSMRKDKGQDTVSLSRRIGVDFVYLTGWVNQDGQVQMREDIYN 565 Query: 412 LD 413 D Sbjct: 566 YD 567 >gi|331672461|ref|ZP_08373251.1| putative amidase [Escherichia coli TA280] gi|284920776|emb|CBG33839.1| putative exported protein [Escherichia coli 042] gi|331070367|gb|EGI41732.1| putative amidase [Escherichia coli TA280] Length = 615 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|304393662|ref|ZP_07375590.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] gi|303294669|gb|EFL89041.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] Length = 527 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 103/349 (29%), Positives = 177/349 (50%), Gaps = 13/349 (3%) Query: 76 AQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVA 133 Q + +A Y+ +++RGGW P L G + V +R+ L G D+ +G+ A Sbjct: 177 GQLRQMLAGYRSLMARGGWQPITEGITLKPGMTDARVNEMRQNLAARGYDV---RGVEFA 233 Query: 134 --FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 +D + AVK FQ RHGL G+ ++ A++V R+ Q+ +NL R + L + + Sbjct: 234 DLYDEGLVDAVKHFQKRHGLASDGVAGPASFRALSVTAAQRVDQIAINLERWR-WLPRDL 292 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G +VLVN + + ++ + VIVG+ Q+P+ S I+ FNP W +P SI Sbjct: 293 GKAHVLVNQAGFEMFTMNGTEIYDKRRVIVGKPFHQSPMFSSSISYAEFNPTWTVPLSIA 352 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPNFIFR--QDPGKIN 306 K+M+ +R +P YL + N + G +++ VDW++ F +R Q+PG N Sbjct: 353 GKEMLPKIRNNPAYLVEKNYSLYSGWGNNSQKLNPYAVDWSAVSAKRFPYRIVQEPGPRN 412 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 A+ K F ++ + Y+HDTP LF+ R + GC+RV +D L + + Sbjct: 413 ALGQVKFIFPNKFSVYLHDTPSRNLFSRTGRAFSHGCIRVDKPLDFARKLYELQGGMNPS 472 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + +++++K V ++PVH Y +AW +D + F +D+Y D + Sbjct: 473 QVTPIIESKKRKRVNFKRKMPVHLAYFTAWINEDGVPLFYEDVYKRDKL 521 >gi|304310214|ref|YP_003809812.1| hypothetical protein HDN1F_05650 [gamma proteobacterium HdN1] gi|301795947|emb|CBL44148.1| conserved hypothetical protein [gamma proteobacterium HdN1] Length = 560 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 111/351 (31%), Positives = 177/351 (50%), Gaps = 24/351 (6%) Query: 79 EKAIAFYQDILS-RGG--WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + A+A Y+++ + R G P LP + L G++ + L + L GD + + + Sbjct: 201 KNALAHYRELAAHRKGISLPSLP-KSLKPGDTWSGIPALADGLRYLGDFTGAPPKNNRYT 259 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 + + VK FQ HGL G++ ST A++VP +R+RQ+++++ R++ L EQ R Sbjct: 260 HDLVAGVKHFQGGHGLGVDGIIGQSTWSALSVPFSVRVRQIELSMERMRWLSEQMADERA 319 Query: 196 VLVNIPAASLEAVENGKV---GLRSTVIVGR-VDRQTPILHSRINRIMFNPYWVIPRSII 251 ++VNIP L A GK L V+VG+ V TPIL + + ++FNPYW +P SI Sbjct: 320 IVVNIPQFQLWAFP-GKTQASSLSMNVVVGKSVGNSTPILLNDVKSVVFNPYWNVPSSIT 378 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--------FIFRQDPG 303 +K+M+ LR++P+YL N+ M+ EV +P P + RQ PG Sbjct: 379 RKEMLPKLRENPEYLVSQNLEMVGNG-------EVIATAPTPEQIEAISKGIYRLRQRPG 431 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 NA+ K EF + + YMHDTP F+ R + GC+R+ + + +LL P W Sbjct: 432 PGNALGRVKFEFPNSDAIYMHDTPNRGAFSRSRRDFSHGCIRLSDPEKMADFLLTGQPGW 491 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + E +K+ + V L VPV Y +A +DIYG D+ Sbjct: 492 DKKRVSEAMKSDERRTVTLRNPVPVLIFYTTAMVDSTGRTVLLEDIYGYDS 542 >gi|320177116|gb|EFW52131.1| L,D-transpeptidase YcbB [Shigella dysenteriae CDC 74-1112] Length = 611 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 305 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 364 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 365 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 421 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 422 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 481 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 482 APGPRNSLGRYKFNMPSSEAIYLHDTPTHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 541 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 542 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 593 >gi|323190745|gb|EFZ76014.1| putative peptidoglycan binding domain protein [Escherichia coli RN587/1] Length = 615 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 155/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPVVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP+YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPRYLESHGYTLMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|260867097|ref|YP_003233499.1| putative carboxypeptidase [Escherichia coli O111:H- str. 11128] gi|257763453|dbj|BAI34948.1| predicted carboxypeptidase [Escherichia coli O111:H- str. 11128] gi|323175452|gb|EFZ61047.1| putative peptidoglycan binding domain protein [Escherichia coli 1180] Length = 615 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYKNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|333001241|gb|EGK20809.1| putative peptidoglycan binding domain protein [Shigella flexneri VA-6] Length = 615 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLLYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADDRTQYRTDIYNYD 597 >gi|332095888|gb|EGJ00895.1| putative peptidoglycan binding domain protein [Shigella dysenteriae 155-74] Length = 611 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 305 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 364 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 365 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 421 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 422 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 481 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 482 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 541 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 542 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYTYD 593 >gi|324019066|gb|EGB88285.1| hypothetical protein HMPREF9542_02261 [Escherichia coli MS 117-3] Length = 615 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSSG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|242239070|ref|YP_002987251.1| hypothetical protein Dd703_1632 [Dickeya dadantii Ech703] gi|242131127|gb|ACS85429.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech703] Length = 564 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 107/342 (31%), Positives = 173/342 (50%), Gaps = 24/342 (7%) Query: 94 WPELPI-RPLHLGNSSVSVQRLRERLIISGDLD-------------PSKGLSVAFDAYVE 139 WP L + L G+ S ++ LR+ L+ +G L+ PS ++ +D + Sbjct: 211 WPRLVLGETLRPGDESPALPVLRDILLRTGALNQGNVSMPLFNEAQPSGPEALRYDGELV 270 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLV 198 AVK FQ GL G + T + +NV R L +N+ R++ + + G ++V Sbjct: 271 EAVKRFQRLQGLQDDGSIGKRTRDWLNVSSQTRATLLALNIQRLRLVPDNVNTG---IMV 327 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 NIP SL NG V L S VIVG+ R+TP++ S ++ ++ NP W +P ++ ++D++ Sbjct: 328 NIPNYSLSYYLNGSVILSSRVIVGQPKRKTPLMSSSLSNVVMNPPWNVPTTLTRQDIIPK 387 Query: 259 LRQDPQYLKDNNIHMI---DEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKI 313 + QDP YL+ + ++ E +++ +DW NF + RQ PG N++ K Sbjct: 388 VIQDPAYLQKHGYVLLSGWSEDAQQIDPAMIDWPMVSANNFPYRLRQAPGDNNSLGRYKF 447 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + + Y+HDTP LF +R +SGCVRV +L LL+D W+ I ++ Sbjct: 448 NMPNTDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASELAALLLQDA-GWNNARISSTLE 506 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 TT V + +PV+F Y++AW D QFR DIY D+ Sbjct: 507 QGNTTYVSIRQRIPVNFYYLTAWVADDGKPQFRTDIYNYDDT 548 >gi|238792383|ref|ZP_04636017.1| Peptidoglycan-binding domain 1 protein [Yersinia intermedia ATCC 29909] gi|238728309|gb|EEQ19829.1| Peptidoglycan-binding domain 1 protein [Yersinia intermedia ATCC 29909] Length = 603 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 99/278 (35%), Positives = 146/278 (52%), Gaps = 8/278 (2%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ HGL G++ T E +NV R L +N+ R++ +L ++ ++VNI Sbjct: 311 AVKRFQQWHGLSDDGVIGVRTREWLNVSPQTRATLLALNIQRLR-ILPGRVD-NGIMVNI 368 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P SL +NG L S VIVGR R+TP++ S +N ++ NP W +P S++++D++ R Sbjct: 369 PNYSLNYYKNGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSLVRQDIVPKAR 428 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEE---VDWNSPEPPNFIF--RQDPGKINAMASTKIEF 315 D Y + + ++ E V + +DW+ P NF + RQ PG N++ K Sbjct: 429 YDAGYFQRHGYTVLSGWSNEAEVVDPSMIDWSMISPNNFPYRLRQAPGASNSLGRFKFNM 488 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 S + Y+HDTP LF +R +SGCVRV DL LL+D W+ + +K Sbjct: 489 PSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWNDARVSSTLKQG 547 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 TT V + VPV Y++AW D QFR DIY D Sbjct: 548 DTTYVNIRQRVPVQLYYLTAWVADDGKPQFRTDIYNYD 585 >gi|293409302|ref|ZP_06652878.1| hypothetical protein ECEG_00235 [Escherichia coli B354] gi|291469770|gb|EFF12254.1| hypothetical protein ECEG_00235 [Escherichia coli B354] Length = 615 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITDSNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|194434397|ref|ZP_03066660.1| putative peptidoglycan binding domain protein [Shigella dysenteriae 1012] gi|194417381|gb|EDX33487.1| putative peptidoglycan binding domain protein [Shigella dysenteriae 1012] gi|320182006|gb|EFW56911.1| L,D-transpeptidase YcbB [Shigella boydii ATCC 9905] Length = 615 Score = 162 bits (411), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYTYD 597 >gi|150026170|ref|YP_001296996.1| hypothetical protein FP2133 [Flavobacterium psychrophilum JIP02/86] gi|149772711|emb|CAL44194.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 566 Score = 162 bits (411), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 99/355 (27%), Positives = 175/355 (49%), Gaps = 43/355 (12%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + L S+ +V+ ++ RL+ D+ + ++ +D + AVK FQ RHGL P G++ Sbjct: 207 PKDKIALNKSNKAVKIIKSRLMYWHDMKQANTITNIYDKETQDAVKTFQSRHGLTPDGLI 266 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 T+ A+N + RI Q+ NL R + G Y+L+NIP SL A++N + Sbjct: 267 GKGTILALNFTKNQRIEQVISNLERWR-WFASDFGQNYLLINIPDYSLLAIKNNDTMQKQ 325 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 ++VG+ RQTPIL S+++ I NP W +P +I+++D+ +D K + ++D K Sbjct: 326 RIVVGKDTRQTPILESKVSNINLNPNWTVPPTILKEDIYPDAIKDKGAFKKKGLVILDHK 385 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 KE + W + + + Q+PGK +++ KI F ++ + Y+HDT F R Sbjct: 386 NKE--INPWSWTIEDAKKYKYVQNPGKNSSLGLMKINFPNKYSVYLHDTNHRDFFGLNYR 443 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV------------------------- 372 +SGCVR+ +++ +L+ + W+ I++ Sbjct: 444 SLSSGCVRLEKPLEMAEYLINNPEKWNLKTIQDTTDINHYNKLQKEKEKKIAIKNAKLLA 503 Query: 373 --------------KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + KT V++A ++ +H +Y +AW K++ +QFR+DIY LD Sbjct: 504 KNPLLVIPEKTYPKQELKTIVVRIADDIFIHQLYWTAWLQKET-LQFREDIYCLD 557 >gi|237730888|ref|ZP_04561369.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226906427|gb|EEH92345.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 622 Score = 162 bits (411), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 131/435 (30%), Positives = 206/435 (47%), Gaps = 53/435 (12%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K N+ LY Y +L PI +IN+ ++ N + Sbjct: 201 MMGYLHFIANIPVKGNRWLYSDKPY-------ALTTPPI------SVINQWQVALDNGQL 247 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGG----WPEL-PIRPLHLGNS 107 +F+A + Q + A ++ +L G WP+L L G Sbjct: 248 TSFVASL---------------APQHPQYAAMHESLLKLVGDTRPWPQLTSTATLRPGEW 292 Query: 108 SVSVQRLRERLIISGDLDPSKGLSV-----AFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 S + LRE L +G L+P+ S +D + AVK FQ GL G + +T Sbjct: 293 SNDIPALREILRRTGMLEPAVSTSGKEGRGTYDRELVDAVKRFQTWQGLGADGAIGPATR 352 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 + +NV R L +N+ R++ LL ++ ++VNIPA SL +NG L S VIVG Sbjct: 353 DWLNVTPAQRAGVLALNIQRLR-LLPSELSTG-IMVNIPAYSLVYYQNGNQVLASRVIVG 410 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 R DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + ++ + Sbjct: 411 RPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKET 470 Query: 283 VE--EVDWNSPEPPN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 ++ +VDW + N F F+Q PG N++ K S + Y+HDTP LF R Sbjct: 471 IDPWQVDWATITASNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPNHNLFQKDTRA 530 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 +SGCVRV +L LL+D W+ I + +K T V + +PV+ Y++A+ Sbjct: 531 LSSGCVRVNKASELANMLLQDA-GWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTAFVG 589 Query: 399 KDSIIQFRDDIYGLD 413 D Q+R DIY D Sbjct: 590 PDGRTQYRTDIYNYD 604 >gi|332162190|ref|YP_004298767.1| hypothetical protein YE105_C2568 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606244|emb|CBY27742.1| L,D-transpeptidase YcbB [Yersinia enterocolitica subsp. palearctica Y11] gi|325666420|gb|ADZ43064.1| hypothetical protein YE105_C2568 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 623 Score = 162 bits (411), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 103/306 (33%), Positives = 156/306 (50%), Gaps = 14/306 (4%) Query: 119 IISGDLDPSKGLSVA------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 + SG + PS A + + AVK FQ HGL G++ + T E +NV R Sbjct: 303 VTSGVVAPSSAPVTATVTDNVYTPELMEAVKRFQRWHGLSDDGVIGARTREWLNVSPQTR 362 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 L +N+ R++ +L ++ ++VNIP SL +NG L S VIVGR R+TP++ Sbjct: 363 ATLLALNIQRLR-ILPGRVD-NGIMVNIPNYSLNYYKNGTQVLSSRVIVGRPSRKTPLMS 420 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE---VDWN 289 S +N ++ NP W +P S++++D++ R D Y + + ++ + V + +DW+ Sbjct: 421 SALNNVVVNPPWNVPTSLVRQDIVPKARYDSSYFQRHGYTVLSGWSNDAEVVDPSMIDWS 480 Query: 290 SPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 P NF + RQ PG N++ K S + Y+HDTP LF +R +SGCVRV Sbjct: 481 MISPNNFPYRLRQAPGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVN 540 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 DL LL+D W+ + +K TT V + VPV Y++AW D QFR Sbjct: 541 KASDLANMLLQDA-GWNDARVSSTLKQGDTTYVNIRQRVPVQLYYLTAWVADDGKPQFRT 599 Query: 408 DIYGLD 413 DIY D Sbjct: 600 DIYNYD 605 >gi|257095730|ref|YP_003169371.1| peptidoglycan-binding domain 1 protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048254|gb|ACV37442.1| Peptidoglycan-binding domain 1 protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 542 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 105/346 (30%), Positives = 166/346 (47%), Gaps = 12/346 (3%) Query: 80 KAIAFYQDILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 +A+A Y+ + W P LP L G + V RL RLI+ DL ++ Sbjct: 171 QALAAYRAVAGHPAWQQELPPLPSGKLAPGQAYSGVSRLTARLIVLADLPVGTLPPPRYE 230 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 + +K FQ RHGL P G++ T E + V R+ QL++ L R++ Q+ G R Sbjct: 231 GSLVDGIKSFQERHGLTPDGVIGKETFEQLKVSPGARVGQLELALERLRWTPLQRQG-RI 289 Query: 196 VLVNIPAASLEAVE----NGKVGLRSTVIVGRVDR-QTPILHSRINRIMFNPYWVIPRSI 250 ++VN+P L + G VIVG + +TP+ + + + F+PYW +P SI Sbjct: 290 IVVNVPEFMLHTYQMNDKGSDPGPVMRVIVGNARKTRTPLFDAEMRFVEFSPYWNVPPSI 349 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF-VEEVDWNSPEPPNFIFRQDPGKINAMA 309 + + + LR DP Y + ++ G+ + + E ++ RQ PG NA+ Sbjct: 350 SRGETLPRLRSDPGYFERQGFELVTSDGRVLGSLPEGGLDALAQGRMRIRQKPGARNALG 409 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F + +N Y+H TP LF R + GC+RV DL ++L P W+R I Sbjct: 410 DIKFVFPNTDNIYLHHTPTAQLFKRDRRDFSHGCIRVEAPADLAEFVLAGEPEWTRQRII 469 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + +K K+ ++L E+PV Y +A + +D + F DIYGLD Sbjct: 470 QAMKRGKSATLRLKEEIPVVIAYRTA-TVRDGRVHFFPDIYGLDRA 514 >gi|123441868|ref|YP_001005851.1| hypothetical protein YE1557 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088829|emb|CAL11635.1| putative exported protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 623 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 103/306 (33%), Positives = 156/306 (50%), Gaps = 14/306 (4%) Query: 119 IISGDLDPSKGLSVA------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 + SG + PS A + + AVK FQ HGL G++ + T E +NV R Sbjct: 303 VTSGVVAPSSAPVTATVTDNVYTPELMEAVKRFQRWHGLSDDGVIGARTREWLNVSPQTR 362 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 L +N+ R++ +L ++ ++VNIP SL +NG L S VIVGR R+TP++ Sbjct: 363 ATLLALNIQRLR-ILPGRVD-NGIMVNIPNYSLNYYKNGTQVLSSRVIVGRPSRKTPLMS 420 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE---VDWN 289 S +N ++ NP W +P S++++D++ R D Y + + ++ + V + +DW+ Sbjct: 421 SALNNVVVNPPWNVPTSLVRQDIVPKARYDSSYFQRHGYTVLSGWSNDAEVVDPSMIDWS 480 Query: 290 SPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 P NF + RQ PG N++ K S + Y+HDTP LF +R +SGCVRV Sbjct: 481 MISPNNFPYRLRQAPGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVN 540 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 DL LL+D W+ + +K TT V + VPV Y++AW D QFR Sbjct: 541 KASDLANMLLQDA-GWNDARVSSTLKQGDTTYVNIRQRVPVQLYYLTAWVADDGKPQFRT 599 Query: 408 DIYGLD 413 DIY D Sbjct: 600 DIYNYD 605 >gi|261253179|ref|ZP_05945752.1| hypothetical protein VIA_003204 [Vibrio orientalis CIP 102891] gi|260936570|gb|EEX92559.1| hypothetical protein VIA_003204 [Vibrio orientalis CIP 102891] Length = 517 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 99/316 (31%), Positives = 172/316 (54%), Gaps = 12/316 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 L N V +QRL I+ DL + FD ++ AVK FQ HGL P G++ T++ Sbjct: 205 LENRDVLIQRLS---IVDVDLIDVRKDIRWFDQTLKVAVKQFQNLHGLKPDGIIGPETIK 261 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 +N+P++ R+ L +N RI+ Q+ + ++VN+P+ + +G+ S V+VG+ Sbjct: 262 WINLPIEKRLSTLAINAERIRYWPSQRDTI--IVVNVPSFQMTYWSSGEEVFESKVVVGK 319 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 ++R TP++ R++ ++ NP W +P I+ +D++ ++ D YL NI +I + G + + Sbjct: 320 IERPTPLMQIRLDSLILNPTWNVPWKIMVEDIIPKVQHDRAYLTKQNIKIIPKWGSDEII 379 Query: 284 --EEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 E +DW++ P +F +R Q+ G NA+ K +R ++HDTP LF+ R Sbjct: 380 NPETIDWDNLNPSSFPYRMTQESGNSNALGLYKFNTPNRRAIFLHDTPSKSLFSRQQRAF 439 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 +SGC+RV N L++ R ++E ++ P+K + VPVH +Y +AW + Sbjct: 440 SSGCIRVENADVFAKRLIEAQGVSRRAKLDEPPGPNQSIPLK--SRVPVHIIYQTAWYEE 497 Query: 400 DSIIQFRDDIYGLDNV 415 S + +R+DIY LD Sbjct: 498 GS-VHYREDIYRLDKA 512 >gi|84684826|ref|ZP_01012726.1| peptidoglycan binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84667161|gb|EAQ13631.1| peptidoglycan binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 539 Score = 162 bits (410), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 102/331 (30%), Positives = 170/331 (51%), Gaps = 11/331 (3%) Query: 88 ILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 + + GGW P + L G+ +V +LR RL+ G +D S + +D ++ AV+ FQ Sbjct: 196 VRAEGGWGPTVQAGSLRPGDQGQAVIQLRNRLVTMGYMDRSA--TQTYDENIQRAVQRFQ 253 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 HGL G+ T++A+N PV+ R+ ++ V + R ++ + + G RYV VN+ + Sbjct: 254 TNHGLTADGVAGGDTVKAINTPVEDRLERIIVAMER-ERWMNIERGDRYVWVNLTTFTAR 312 Query: 207 AVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 V+ GKV + +VG+ +TP + ++ NP W +PRSII + + LR + Sbjct: 313 VVDGGKVTFETRSVVGQNLSTHRTPEFSDMMEHMVINPSWYVPRSIIVNEYLPALRANSG 372 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTY 322 ++ + D +G+ V D++ NF F RQ PG NA+ K F ++ N Y Sbjct: 373 --AAGHLLITDARGRTV-SRATDFSQYSARNFPFDMRQPPGPGNALGYVKFMFPNQYNIY 429 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL 382 +HDTP LF VR + GCVR++ D +L + +++T + T V+L Sbjct: 430 LHDTPSKSLFGREVRTFSHGCVRLQQPFDFAYTMLAPQEADPEGFFQSILRTGQETKVEL 489 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 VPVH VY +A++ + +R+D+YG D Sbjct: 490 DEPVPVHLVYRTAFTDTRGEMNYRNDMYGRD 520 >gi|300925397|ref|ZP_07141282.1| hypothetical protein HMPREF9548_03475 [Escherichia coli MS 182-1] gi|300418467|gb|EFK01778.1| hypothetical protein HMPREF9548_03475 [Escherichia coli MS 182-1] Length = 615 Score = 162 bits (410), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVENPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|326797793|ref|YP_004315612.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobacterium sp. 21] gi|326548557|gb|ADZ76942.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobacterium sp. 21] Length = 548 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 99/334 (29%), Positives = 168/334 (50%), Gaps = 23/334 (6%) Query: 85 YQDILSRGGWPELPI----RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 Y+++ ++ W PI + +G+SS +++++ RL + GD L+ +D+ + S Sbjct: 223 YRELAAKHKWN--PIIADKKSYKIGDSSTVLRQIKTRLFLLGDYQ-GDTLTNLYDSTLFS 279 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 V+ FQ RHGL P G + S T+ +NV R++Q+ VN+ R + L + Y+ VNI Sbjct: 280 GVRSFQSRHGLRPDGAIGSGTINELNVLPAARLKQIAVNMER-SRWLPVSLKTDYLAVNI 338 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P L + V+VG+ +T I H + ++F+PYW +P SI++ +++ +R Sbjct: 339 PEFKLHVYHADSLLWSCNVVVGKAMHKTVIFHGDVKYVVFSPYWNVPPSIVKNEILPGMR 398 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +D Y+ +N+ + + G PN RQ PG N++ K F + N Sbjct: 399 RDRNYIAKHNMEITGKSGG-------------LPNV--RQKPGPKNSLGLVKFLFPNSYN 443 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HD+P L+N R + GC+RV L +LL+ TW++ I + + K V Sbjct: 444 IYLHDSPAKSLYNESSRAFSHGCIRVSEPEKLANFLLRSDSTWNKESIYKAMHAGKEKYV 503 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 L VPV Y +A+ ++ I FR DIY D+ Sbjct: 504 TLKKTVPVFIAYFTAFIDREGKINFRKDIYDRDD 537 >gi|215486050|ref|YP_002328481.1| hypothetical protein E2348C_0918 [Escherichia coli O127:H6 str. E2348/69] gi|215264122|emb|CAS08466.1| predicted carboxypeptidase [Escherichia coli O127:H6 str. E2348/69] Length = 615 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPVVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTLMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|82777551|ref|YP_403900.1| hypothetical protein SDY_2332 [Shigella dysenteriae Sd197] gi|81241699|gb|ABB62409.1| putative amidase [Shigella dysenteriae Sd197] Length = 615 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 KVPPTLARKDILPKVRNDPGYLEIHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|149203870|ref|ZP_01880839.1| peptidoglycan binding protein, putative [Roseovarius sp. TM1035] gi|149142987|gb|EDM31029.1| peptidoglycan binding protein, putative [Roseovarius sp. TM1035] Length = 522 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 100/333 (30%), Positives = 175/333 (52%), Gaps = 10/333 (3%) Query: 86 QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + +++ GGW + L G+S +V LR RLI G LD S + +D ++ AV+ Sbjct: 176 EQLVAEGGWGAAVSAEKLRPGDSGPAVIALRNRLIAMGYLDRSAAQT--YDMRLQQAVQA 233 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL+ G+ S+TL A+N P R++ + V + R + L E++ G R++LVN+ S Sbjct: 234 FQGDHGLETDGIAGSTTLAAVNTPATERLKSVIVAMERERWLSEER-GQRHILVNLTDFS 292 Query: 205 LEAVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 ++N V + ++G+ D R++P + ++ NP W +P SI + + ++++ Sbjct: 293 ARILDNDSVTFATRAVIGKNDQNRRSPEFSDEMEYMVINPTWHVPYSIAVNEYLPQMQRN 352 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 P +++ + + G+EV V++ + NF F +Q P + NA+ K F ++ N Sbjct: 353 PG--AASHLKLYNRNGREVSRGAVNFGAYNARNFPFAIKQPPSERNALGLVKFMFPNKYN 410 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP+ LF+ R + GC+R+ D LL + + V+ T + T V Sbjct: 411 IYLHDTPQKALFDLEKRDFSHGCIRLHQPFDFAYALLGRQESDPKAFFHSVLGTGRETYV 470 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +L VPVH +Y +A++ Q+R D+YG D Sbjct: 471 QLEQHVPVHIIYRTAFTQAQGRPQYRGDVYGRD 503 >gi|170769178|ref|ZP_02903631.1| putative peptidoglycan binding domain [Escherichia albertii TW07627] gi|170121830|gb|EDS90761.1| putative peptidoglycan binding domain [Escherichia albertii TW07627] Length = 615 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 157/293 (53%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+++ + +AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYNSELVNAVKRFQAWQGLGADGTIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPAELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ + ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSKEAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV +L LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASELANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|330445733|ref|ZP_08309385.1| putative peptidoglycan binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489924|dbj|GAA03882.1| putative peptidoglycan binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 579 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 122/394 (30%), Positives = 190/394 (48%), Gaps = 34/394 (8%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK----ETIAQTEKAIAFYQDILSRG 92 D I E H+ R F++R+ D I +++ I + ++ I Sbjct: 188 DTFIEELLHNHEQQRLRYFISRLKPHDDEYIELVAALDELNEIKDMRWPVFLFKGI---- 243 Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA------FDAYVESAVKLFQ 146 IRP N+ V + E L GD+ PS+ + V A+K FQ Sbjct: 244 ------IRPGQYVNNMDGVVTVLETL---GDMTPSEARKIRTQKRKRLSGSVVIAIKRFQ 294 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKMGLRYVLVNIPAASL 205 RHGL G++ T + + + + RIR L +N R++ + K G V+VNIP+ + Sbjct: 295 ERHGLKSDGVIGPQTQQWLALSLKQRIRLLALNAQRLRLWSVTPKTG---VVVNIPSYYM 351 Query: 206 EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 NG+ L S VIVGR RQTP++ S I ++FNPYW +P SI++KD+M +R++ Y Sbjct: 352 NLWLNGEKVLGSKVIVGRPSRQTPMMGSDIQSVVFNPYWNVPNSIMKKDIMPKVRRNRSY 411 Query: 266 LKDNNIHMIDEKG--KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNT 321 L NN +I G +++ + + ++ P F + RQ PGK NA+ K F + Sbjct: 412 LSRNNYEVIKGWGSAQKISINSIPYHLLSPNRFPYRLRQKPGKRNALGLFKFNFPNSQAI 471 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK 381 Y+HDT LFN R +SGC+RV L LL+ + + S + ++RKT + Sbjct: 472 YLHDTSSRSLFNKHERALSSGCIRVEQAKSLAKVLLEYSGS-SEQRFNNLSRSRKTRTIV 530 Query: 382 L--ATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L VPV +Y +AW + ++ +R DIY D Sbjct: 531 LGDGKSVPVDLIYQTAWVDELGLVNYRSDIYKYD 564 >gi|312969009|ref|ZP_07783216.1| putative peptidoglycan binding domain protein [Escherichia coli 2362-75] gi|312286411|gb|EFR14324.1| putative peptidoglycan binding domain protein [Escherichia coli 2362-75] Length = 611 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 305 PAPVVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 364 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 365 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 421 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 422 NVPPTLARKDILPKVRNDPGYLESHGYTLMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 481 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 482 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 541 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 542 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 593 >gi|259908907|ref|YP_002649263.1| hypothetical protein EpC_22600 [Erwinia pyrifoliae Ep1/96] gi|224964529|emb|CAX56039.1| Peptidoglycan-binding domain 1 protein [Erwinia pyrifoliae Ep1/96] gi|283478902|emb|CAY74818.1| Uncharacterized protein ycbB [Erwinia pyrifoliae DSM 12163] Length = 615 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 150/280 (53%), Gaps = 8/280 (2%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 A+K FQ GL+ G + T E +NV R L +N+ R++ LL M ++VNI Sbjct: 323 ALKRFQRWQGLEADGAIGMRTREWLNVSPQQRATLLALNIQRLR-LLPDDMQ-NGIMVNI 380 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P SL NG+ L S VIVGR DR+TP++ S +N ++ NP W +P ++++KD++ ++ Sbjct: 381 PNYSLAYYVNGREILSSRVIVGRPDRKTPLMRSALNNVVLNPPWNVPTTLVRKDIVPKVK 440 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEE---VDWNSPEPPNFIF--RQDPGKINAMASTKIEF 315 +DP YL + ++ E V + ++W++ +F + RQ PG N++ K Sbjct: 441 RDPMYLYKHGYTLLAGWSNEAEVVDPSMINWSTVSAASFPYRIRQAPGATNSLGRYKFNM 500 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 S + Y+HDTP LF +R +SGCVRV DL LL+D W+ I +K Sbjct: 501 PSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNRASDLANLLLRDV-GWNDARISGTLKEG 559 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 T V + +PV+ Y++AW +D Q+R DIY DN Sbjct: 560 NTRFVPIRQRIPVNLYYLTAWVAEDGQPQYRTDIYNYDNT 599 >gi|156934583|ref|YP_001438499.1| hypothetical protein ESA_02417 [Cronobacter sakazakii ATCC BAA-894] gi|156532837|gb|ABU77663.1| hypothetical protein ESA_02417 [Cronobacter sakazakii ATCC BAA-894] Length = 664 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 100/287 (34%), Positives = 155/287 (54%), Gaps = 8/287 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + +AVK FQ GL G++ ST + +NV R L +N+ R++ LL K+ Sbjct: 365 YDKDLVAAVKRFQKWQGLGADGVIGESTRDWLNVTPAQRAALLALNIQRLR-LLPGKLST 423 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VNIP SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ +K Sbjct: 424 G-IMVNIPEYSLVYYQNGNQVLASRVIVGRPDRKTPLMSSALNNVVVNPPWNVPPTLARK 482 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE---VDWNSPEPPN--FIFRQDPGKINAM 308 D++ + DP YL+ + +++ G V + VDW + P N F F+Q PG N++ Sbjct: 483 DILPKVWNDPGYLESHGYTVLNGWGSNADVVDPWMVDWATITPSNLPFRFQQAPGAHNSL 542 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K S + Y+HDTP LF R +SGCVRV +L LL+D W+ I Sbjct: 543 GRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDSRI 601 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + +K T V + +PV+ Y++A+ +D Q+R DIY D+ Sbjct: 602 SQTLKEGNTRYVNIPQTIPVNLYYLTAFIGEDGRPQYRTDIYNYDHT 648 >gi|309787798|ref|ZP_07682408.1| putative peptidoglycan binding domain protein [Shigella dysenteriae 1617] gi|308924197|gb|EFP69694.1| putative peptidoglycan binding domain protein [Shigella dysenteriae 1617] Length = 610 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 304 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 363 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 364 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 420 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 421 KVPPTLARKDILPKVRNDPGYLEIHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 480 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 481 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 540 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 541 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 592 >gi|323185369|gb|EFZ70733.1| putative peptidoglycan binding domain protein [Escherichia coli 1357] Length = 615 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 100/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + ++D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRASYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|331646190|ref|ZP_08347293.1| putative amidase [Escherichia coli M605] gi|330910705|gb|EGH39215.1| l,D-transpeptidase YcbB [Escherichia coli AA86] gi|331044942|gb|EGI17069.1| putative amidase [Escherichia coli M605] Length = 615 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 105/315 (33%), Positives = 164/315 (52%), Gaps = 12/315 (3%) Query: 107 SSVSVQRLRERLI---ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 S+V+V+ + + I+ P+ + A+D + AVK FQ GL G + +T + Sbjct: 287 SAVTVETAETKPMDKQITSRSKPAPVVRAAYDNELVEAVKRFQTWQGLGADGAIGPATRD 346 Query: 164 AMNVPVDLRIRQLQVNLMRIKKL-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 +NV R L +N+ R++ L E G ++VNIPA SL +NG L S VIVG Sbjct: 347 WLNVTPAQRAGVLALNIQRLRLLPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVG 403 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 R DR+TP++ S +N ++ NP W +P ++ +KD++ +R DP YL+ + ++ Sbjct: 404 RPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREA 463 Query: 283 VE--EVDWNSPEPPN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 ++ +VDW++ N F F+Q PG N++ K S Y+HDTP LF R Sbjct: 464 IDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRA 523 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 +SGCVRV DL LL+D W+ I + +K T V + +PV+ Y++A+ Sbjct: 524 LSSGCVRVNKASDLANMLLQDA-GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVG 582 Query: 399 KDSIIQFRDDIYGLD 413 D Q+R DIY D Sbjct: 583 ADGRTQYRTDIYNYD 597 >gi|110679848|ref|YP_682855.1| peptidoglycan binding domain-containing protein [Roseobacter denitrificans OCh 114] gi|109455964|gb|ABG32169.1| peptidoglycan binding domain protein, putative [Roseobacter denitrificans OCh 114] Length = 537 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 107/366 (29%), Positives = 182/366 (49%), Gaps = 11/366 (3%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQ 112 NF G +P + E A ++ + + ++++GGW P + + L G+ SV Sbjct: 160 NFAKSSPKGFFKALPPQTGEYNALMKQKLVL-EGLVAKGGWGPTVKAKKLEPGDQGASVV 218 Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 LR+RLI G L S + +DA + +AV FQ HGL G+V TL +N V R Sbjct: 219 ALRDRLIRMGYLKRSA--ASTYDAAMTAAVVRFQADHGLAQDGIVGRGTLAEINTSVRKR 276 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTPI 230 ++ + V + R ++ + ++ G R++ VN+ + + ++ GKV + ++G D RQ+P Sbjct: 277 LQAVIVAMER-ERWVNKERGTRHIEVNLTDFTAKIIDKGKVTFSTRSVIGARDAKRQSPE 335 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 + ++ NP W +PRSI + + L+QDP + N++ + D G+++ VD+ Sbjct: 336 FSDVMEFMVINPSWFVPRSIATGEYLPELQQDPNAV--NHLIITDRSGRQIDRANVDFTK 393 Query: 291 PEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 F + RQ P + NA+ K F ++ N Y+HDTP LF R + GC+R+ + Sbjct: 394 YTERTFPYAMRQPPSRSNALGLVKFMFPNKYNIYLHDTPAKNLFGRETRAYSHGCIRLAD 453 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 + LL ++ + T K T + L VPVH +Y +A + IQ+R D Sbjct: 454 PFEFAYALLAKQSGDPEGLFQKTLATGKETQLNLKKPVPVHIIYRTAVADSKGRIQYRRD 513 Query: 409 IYGLDN 414 +YG D Sbjct: 514 VYGRDG 519 >gi|83952122|ref|ZP_00960854.1| peptidoglycan binding protein, putative [Roseovarius nubinhibens ISM] gi|83837128|gb|EAP76425.1| peptidoglycan binding protein, putative [Roseovarius nubinhibens ISM] Length = 523 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 98/330 (29%), Positives = 174/330 (52%), Gaps = 9/330 (2%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 +L G PE+P + L G S +V +R RL+I G + + S +DA + AV+ FQ Sbjct: 180 MLQGGFGPEVPAKSLKRGQSGPAVVAMRNRLVIMGFM--PRSASQEYDAKLAEAVQAFQA 237 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 HGL G ++T+ +N V+ R++ + V + R ++ + Q G R+VLVN+ S Sbjct: 238 AHGLVADGDAGAATVAEINTSVETRLKSILVAMER-ERWINQPRGDRHVLVNLTDFSARI 296 Query: 208 VENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 V++ +V ++ ++G DR++P + + NP W +PRSI K+ + ++++P Sbjct: 297 VDHDEVTFQTRAVIGLNDSDRRSPEFSDVMEYMEINPTWNVPRSITVKEYLPQMQRNPN- 355 Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYM 323 ++ + + +G++V V++N+ F F +Q P NA+ K F ++ N Y+ Sbjct: 356 -AAGHLKLYNSRGQQVSRANVNFNAYTARTFPFALKQPPSNRNALGLVKFMFPNKYNIYL 414 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 HDTP LF R + GC+R+++ D LL + V+ T + T V+L Sbjct: 415 HDTPAKSLFQRNKRDFSHGCIRLQDPFDFAYALLARQEEDPKGFFHRVLNTGQQTQVRLK 474 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +VPVH +Y +A++ +Q+R+D+YG D Sbjct: 475 KQVPVHIIYRTAFTQAKGPMQYRNDVYGRD 504 >gi|315296218|gb|EFU55525.1| conserved hypothetical protein [Escherichia coli MS 16-3] Length = 615 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 153/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PVPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|323967172|gb|EGB62596.1| ykud domain-containing protein [Escherichia coli M863] gi|327253715|gb|EGE65344.1| putative peptidoglycan binding domain protein [Escherichia coli STEC_7v] Length = 615 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPVVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLFYLTAFVGADGRTQYRTDIYNYD 597 >gi|205352202|ref|YP_002226003.1| hypothetical protein SG0937 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856386|ref|YP_002243037.1| hypothetical protein SEN0899 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205271983|emb|CAR36827.1| putative exported protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708189|emb|CAR32482.1| putative exported protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326627246|gb|EGE33589.1| putative peptidoglycan binding domain-containing protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 616 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 155/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ Sbjct: 310 PAPAVRAAYDNELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRL 369 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 370 LPAELSTG---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPW 426 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q Sbjct: 427 NVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWTTITPSNLPFRFQQ 486 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S + Y+HDTP LF R +SGCVRV +L LL+D Sbjct: 487 APGAHNSLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA 546 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 547 -GWNDARISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 598 >gi|323976688|gb|EGB71776.1| ykud domain-containing protein [Escherichia coli TW10509] Length = 615 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 100/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A++ + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYNNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|331682434|ref|ZP_08383053.1| putative amidase [Escherichia coli H299] gi|331080065|gb|EGI51244.1| putative amidase [Escherichia coli H299] Length = 615 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPVVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|198244692|ref|YP_002214919.1| hypothetical protein SeD_A1060 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939208|gb|ACH76541.1| YcbB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326622672|gb|EGE29017.1| YcbB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 616 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 155/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ Sbjct: 310 PAPAVRAAYDNELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRL 369 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 370 LPAELSTG---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPW 426 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q Sbjct: 427 NVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWTTITPSNLPFRFQQ 486 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S + Y+HDTP LF R +SGCVRV +L LL+D Sbjct: 487 APGAHNSLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA 546 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 547 -GWNDARISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 598 >gi|26246952|ref|NP_752992.1| hypothetical protein c1067 [Escherichia coli CFT073] gi|227884110|ref|ZP_04001915.1| peptidoglycan binding domain protein [Escherichia coli 83972] gi|300978416|ref|ZP_07174264.1| conserved hypothetical protein [Escherichia coli MS 45-1] gi|301047814|ref|ZP_07194866.1| conserved hypothetical protein [Escherichia coli MS 185-1] gi|331656996|ref|ZP_08357958.1| putative amidase [Escherichia coli TA206] gi|26107352|gb|AAN79535.1|AE016758_139 Hypothetical protein ycbB [Escherichia coli CFT073] gi|227838862|gb|EEJ49328.1| peptidoglycan binding domain protein [Escherichia coli 83972] gi|300300306|gb|EFJ56691.1| conserved hypothetical protein [Escherichia coli MS 185-1] gi|300409658|gb|EFJ93196.1| conserved hypothetical protein [Escherichia coli MS 45-1] gi|307552764|gb|ADN45539.1| putative peptidoglycan binding domain protein [Escherichia coli ABU 83972] gi|315291223|gb|EFU50583.1| conserved hypothetical protein [Escherichia coli MS 153-1] gi|331055244|gb|EGI27253.1| putative amidase [Escherichia coli TA206] Length = 615 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPVVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNNREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|256422945|ref|YP_003123598.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] gi|256037853|gb|ACU61397.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] Length = 534 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 98/349 (28%), Positives = 171/349 (48%), Gaps = 20/349 (5%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPI---RPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 ++ A K++ Y DI + W + I + G+S+ + +++RL +G+ K Sbjct: 196 QSYAALHKSLQRYVDIAEKNSWDTIRIEKKKRYKKGDSTAVIAWVKKRLQATGEY-SDKD 254 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 S F+ +E+AV F+ HG P G++ + L MN+P ++++ +NL R+ Sbjct: 255 TSTVFNDALETAVTAFEATHGHTPKGVITDTLLREMNMPAIKLVQRILINLERMHWAPAN 314 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 G R +LVNIP L K V+VG+ + T + ++++I+F+PYW +P S Sbjct: 315 PEG-RLILVNIPEFGLHVWNGSKKEFDMPVVVGKEGKSTTMFSGKLDQIVFSPYWNLPNS 373 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I++++++ L ++ Y+ N+ + E+ P I RQ PGK N + Sbjct: 374 IVKEEILPALARNKNYISSKNMEITGERN----------GLP-----IVRQKPGKDNPLG 418 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F + N Y HDT + LF+ R + GC+R+ + + + +LL D WS I+ Sbjct: 419 QVKFLFPNSFNIYFHDTNQKYLFDRDQRAFSHGCIRLGDPVKMANYLLADNQNWSAERID 478 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 + + K V++ VPV Y +AW + +QFR+DIY D G Sbjct: 479 SAMNSGKEKYVRVKDPVPVLITYYTAWVDEAGKLQFREDIYDHDTYMAG 527 >gi|222032656|emb|CAP75395.1| Uncharacterized protein ycbB [Escherichia coli LF82] gi|312945445|gb|ADR26272.1| hypothetical protein NRG857_04220 [Escherichia coli O83:H1 str. NRG 857C] Length = 615 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPVVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|306812622|ref|ZP_07446815.1| hypothetical protein ECNC101_11937 [Escherichia coli NC101] gi|305853385|gb|EFM53824.1| hypothetical protein ECNC101_11937 [Escherichia coli NC101] Length = 615 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPVVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNNREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|117920121|ref|YP_869313.1| peptidoglycan binding domain-containing protein [Shewanella sp. ANA-3] gi|117612453|gb|ABK47907.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. ANA-3] Length = 560 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 106/365 (29%), Positives = 193/365 (52%), Gaps = 20/365 (5%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELP----IRPLHLGNSSVSVQRLRERLIISGDL---- 124 E Q ++ +A Y+D+ +R + +P I+P G++S SVQ + RL G L Sbjct: 186 EPYHQLKQYLAQYKDLAARYPFSPIPYTEVIKP---GSTSPSVQGIATRLTELGYLAASA 242 Query: 125 --DPSKGLS--VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 D S ++ + +D+ +E+AV+ FQ H L G++ + T+ A+NVP + Q+++NL Sbjct: 243 PADNSAAVNQPLTYDSTLEAAVRQFQTDHSLKADGVIGAGTMAALNVPYSQLVDQIRINL 302 Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 R + L + Y++VN+ L ++ + R+ +I+G+++ +TP+ S++ ++ Sbjct: 303 ER-ARWLSANLPTNYLIVNLAGYELLLFKDNSLSWRTDIIIGKINAKTPLFKSKLKYVVV 361 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF--IF 298 NP W +PRSI +++ LR++P YL+ + +++ G V +DW+S NF F Sbjct: 362 NPTWTVPRSI-STEIINHLRKEPDYLQKKHFKVVEGSGTPVDASGIDWHSMTRKNFPYWF 420 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 QDPG+ N++ K F ++ + Y+HDTP LF R + GC+RV++ + L LL Sbjct: 421 VQDPGEDNSLGLVKFIFPNQYSIYLHDTPAKSLFEQTDRAFSHGCIRVKDPLVLADKLLS 480 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 WS + + KT + L + + +Y + + KD I+F +D+Y D V + Sbjct: 481 ANANWSSSTLSSKLSEGKTENLFLDEPLDILIMYWTV-TLKDGKIKFYNDVYKRDPVLIE 539 Query: 419 IIPLP 423 + P Sbjct: 540 ALNRP 544 >gi|157375514|ref|YP_001474114.1| hypothetical protein Ssed_2377 [Shewanella sediminis HAW-EB3] gi|157317888|gb|ABV36986.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3] Length = 483 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 108/329 (32%), Positives = 169/329 (51%), Gaps = 13/329 (3%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS---KGLSVAFDAYVESAVKLFQMRHG 150 WP + LG SS V++LR L GDL+ S + +D V +K FQ+RHG Sbjct: 156 WPTMSQYEFRLGQSSNEVKQLRWMLTQLGDLEHSELTRYREAIYDPMVIDGIKSFQLRHG 215 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L+ +G +D T+EA+NV R+ Q+Q NL R L + V +NIP L E Sbjct: 216 LNVNGNLDKYTVEAINVTPLQRVEQMQRNLWRWITL-STPNAEKLVWINIPGYQLSIFEQ 274 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL--KD 268 G V L+ VI+G+ TPIL + + ++ NP W P SII+ +++ L +P YL K Sbjct: 275 GSVTLQMKVIIGKPSSPTPILSTYLTKLTINPSWRPPASIIKSELLPLNAAEPGYLNHKQ 334 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR----QDPGKINAMASTKIEFYSRNNTYMH 324 +H + K V ++ D +S + P + + Q PG+ NA+ + +R++ Y+H Sbjct: 335 FELHGVGLNKKHV-IKLGDVDSKQLPTLLRQYRLVQAPGEDNALGKMRFTIVNRHSIYLH 393 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP LF VR + GC+R+ I L +L+ +T +R +++ V T L++ Sbjct: 394 DTPAKQLFKRNVRALSHGCIRLEKPIALSSYLV-ETDERAR-ELQKAVGGSGTRHFSLSS 451 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +PV+ Y ++W +Q R DIY LD Sbjct: 452 PIPVYITYHTSWVDAAGKLQVRPDIYNLD 480 >gi|197266013|ref|ZP_03166087.1| YcbB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197244268|gb|EDY26888.1| YcbB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 614 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 155/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ Sbjct: 308 PAPAVRAAYDNELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRL 367 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 368 LPAELSTG---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPW 424 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q Sbjct: 425 NVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQ 484 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S + Y+HDTP LF R +SGCVRV +L LL+D Sbjct: 485 APGAHNSLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA 544 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 545 -GWNDARISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 596 >gi|260597325|ref|YP_003209896.1| murein L,D-transpeptidase [Cronobacter turicensis z3032] gi|260216502|emb|CBA29674.1| Uncharacterized protein ycbB [Cronobacter turicensis z3032] Length = 521 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 100/287 (34%), Positives = 155/287 (54%), Gaps = 8/287 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + +AVK FQ GL G++ ST + +NV R L +N+ R++ LL K+ Sbjct: 222 YDKDLVAAVKRFQKWQGLGADGVIGQSTRDWLNVTPAQRAALLALNIQRLR-LLPGKLST 280 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VNIP SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ +K Sbjct: 281 G-IMVNIPEYSLVYYQNGSPVLASRVIVGRPDRKTPLMSSALNNVVVNPPWNVPPTLARK 339 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE---VDWNSPEPPN--FIFRQDPGKINAM 308 D++ + DP YL+ + +++ G V + VDW + P N F F+Q PG N++ Sbjct: 340 DILPKVWNDPGYLESHGYTVLNGWGSNADVVDPWMVDWATITPSNLPFRFQQAPGAHNSL 399 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K S + Y+HDTP LF R +SGCVRV +L LL+D W+ I Sbjct: 400 GRYKFNMPSSDAIYLHDTPNHNLFQRDSRALSSGCVRVNKASELANMLLQDA-GWNDSRI 458 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + +K T V + +PV+ Y++A+ +D Q+R DIY D+ Sbjct: 459 SQTLKEGNTRYVNIPQTIPVNLYYLTAFIGEDGRPQYRTDIYNYDHT 505 >gi|205360811|ref|ZP_02686636.2| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205346897|gb|EDZ33528.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 640 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 155/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ Sbjct: 334 PAPAVRAAYDNELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRL 393 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 394 LPAELSTG---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPW 450 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q Sbjct: 451 NVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQ 510 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S + Y+HDTP LF R +SGCVRV +L LL+D Sbjct: 511 APGAHNSLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA 570 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 571 -GWNDARISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 622 >gi|320540487|ref|ZP_08040137.1| putative murein L,D-transpeptidase [Serratia symbiotica str. Tucson] gi|320029418|gb|EFW11447.1| putative murein L,D-transpeptidase [Serratia symbiotica str. Tucson] Length = 541 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 149/281 (53%), Gaps = 8/281 (2%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 + VK FQ GL+ G++ + T E +NV R+ L +N+ R++ L ++VN Sbjct: 249 AGVKRFQKWQGLNTDGVIGARTREWLNVSPQTRVALLALNIQRLRILPGYISS--GIMVN 306 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IP S+ +NG+ L S VIVGR R+TP+++S ++ ++ NP W +P S+++ D++ Sbjct: 307 IPNYSMTYYQNGREVLSSHVIVGRPSRKTPLMNSGLSNVVLNPPWNVPTSLVRADIVPKA 366 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEE---VDWNSPEPPNFIF--RQDPGKINAMASTKIE 314 +D Y + + ++ + K+ V + +DWNS NF + RQ PG N++ K Sbjct: 367 MRDGSYFQQHGYTLLSDWSKDAKVIDPAMIDWNSVSARNFPYRVRQAPGASNSLGRFKFN 426 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 S + Y+HDTP LF +R +SGCVRV DL LL D WS + ++ Sbjct: 427 MPSSDAIYLHDTPNHNLFQKDMRALSSGCVRVNKADDLANMLLHDA-GWSNDRVASTLQE 485 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 TT V + +PV Y++AW D +QFR DIY D+ Sbjct: 486 GNTTYVNIRQRIPVKLYYLTAWVSDDGQMQFRTDIYNYDHA 526 >gi|308186271|ref|YP_003930402.1| hypothetical protein Pvag_0751 [Pantoea vagans C9-1] gi|308056781|gb|ADO08953.1| Uncharacterized protein ycbB [Pantoea vagans C9-1] Length = 603 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 149/287 (51%), Gaps = 8/287 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + + VK FQ GLD G + + T + +NV +R L +N+ R++ LL M Sbjct: 304 YDETLVAGVKRFQQWQGLDGDGAIGTRTRQWLNVSPQMRASLLALNIQRLR-LLPDDMH- 361 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VNI SL NG L S VIVGR DR+TP++ S +N ++ NP W +P ++++K Sbjct: 362 NGIMVNIANYSLIYYNNGNKILSSRVIVGRPDRKTPLMRSALNNVVLNPPWNVPTTLVRK 421 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIFR--QDPGKINAM 308 D++ ++QDP YL + ++ + V +DW +F +R Q PG NA+ Sbjct: 422 DIIPKVKQDPTYLYKHGYTLLSGWSADAEVIDPSMIDWRMVSAASFPYRMIQAPGVANAL 481 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K S + Y+HDTP LF +R +SGCVRV +L LL+D W+ I Sbjct: 482 GRYKFNMPSSDAIYLHDTPNHNLFQRDIRALSSGCVRVNKASELAGLLLQDA-GWNDSRI 540 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 +K T V + +PV+ Y++AW D QFR DIY D+ Sbjct: 541 SSTLKEGDTRYVPIRHRIPVNLYYLTAWVADDGKPQFRTDIYNYDDT 587 >gi|168466590|ref|ZP_02700452.1| YcbB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631019|gb|EDX49605.1| YcbB [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 614 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 155/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ Sbjct: 308 PAPSVRAAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRL 367 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 368 LPAELSTG---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPW 424 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q Sbjct: 425 NVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQ 484 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S + Y+HDTP LF R +SGCVRV +L LL+D Sbjct: 485 APGAHNSLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA 544 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 545 -GWNDARISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 596 >gi|332092543|gb|EGI97616.1| putative peptidoglycan binding domain protein [Shigella boydii 5216-82] Length = 611 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 100/293 (34%), Positives = 153/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + VK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 305 PAPAVRAAYDNELVEVVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 364 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 365 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 421 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 422 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 481 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 482 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 541 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 542 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYTYD 593 >gi|163752572|ref|ZP_02159755.1| hypothetical protein KT99_11874 [Shewanella benthica KT99] gi|161327545|gb|EDP98746.1| hypothetical protein KT99_11874 [Shewanella benthica KT99] Length = 371 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 97/289 (33%), Positives = 159/289 (55%), Gaps = 5/289 (1%) Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSK 128 ISK+ +A T I + + + W EL L G++ V + RL GDL Sbjct: 85 ISKDYLA-TSNNIRYLLWLDQKMDWNELVSNSWLKQGDNHSLVPEISRRLNGLGDLGEYD 143 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 +S FDA V++AV+ FQ RHGL G++ T+ +N+ R L +N + + L Sbjct: 144 SVSTLFDANVKNAVRHFQQRHGLKIDGIIGPETIRWINITPVKRAELLAINFINKTRYLA 203 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + ++++NIPA LE ++NG+V L+S VIVG+ RQTP+L SRI+ ++ NP W +PR Sbjct: 204 SIEPI-FLIINIPAFELELIDNGQVALQSRVIVGKPYRQTPLLISRISNLVINPSWRVPR 262 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKIN 306 S++ +D++ +R+D Y++ N ++ D +G+ V +W F +R Q PG+ N Sbjct: 263 SLLIRDLLPKVREDGGYIQAGNFNVFDNQGQMVSKTAQEWQDLAHGRFPYRLVQQPGEGN 322 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 + K F ++ + Y+HDT + LF+ R +SGC+R+ N+ L W Sbjct: 323 TLGRYKFYFENKYSVYLHDTADKELFDESNRALSSGCIRIENVEGLANW 371 >gi|295096375|emb|CBK85465.1| Uncharacterized protein conserved in bacteria [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 607 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 99/286 (34%), Positives = 155/286 (54%), Gaps = 7/286 (2%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 A+D + +AVK FQ GL G++ ST + +NV R L +N+ R++ LL + Sbjct: 307 AAYDRELVAAVKQFQAAQGLGADGVIGPSTRDWLNVSPAQRAGVLALNIQRLR-LLPGTL 365 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 ++VNIPA SL ++G L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 366 STG-IMVNIPAYSLVYYQDGSEVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 424 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ +N ++ + ++ VDW++ P N F F+Q PG N+ Sbjct: 425 RKDILPKVWNDPGYLERHNYTVMRGWNSKEAIDPWMVDWSTITPSNLPFRFQQAPGAHNS 484 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 485 LGRYKFNMPSSDAIYLHDTPNHNLFQKDARALSSGCVRVNKASELANMLLQDA-GWNDTR 543 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 544 ISDALKQGDTRYVNIRHNIPVNLYYLTAFVGADGRTQYRTDIYNYD 589 >gi|110641122|ref|YP_668852.1| hypothetical protein ECP_0936 [Escherichia coli 536] gi|191172097|ref|ZP_03033641.1| putative peptidoglycan binding domain [Escherichia coli F11] gi|300983088|ref|ZP_07176432.1| hypothetical protein HMPREF9553_02391 [Escherichia coli MS 200-1] gi|110342714|gb|ABG68951.1| hypothetical protein YcbB [Escherichia coli 536] gi|190907624|gb|EDV67219.1| putative peptidoglycan binding domain [Escherichia coli F11] gi|300306992|gb|EFJ61512.1| hypothetical protein HMPREF9553_02391 [Escherichia coli MS 200-1] gi|324009854|gb|EGB79073.1| hypothetical protein HMPREF9532_00405 [Escherichia coli MS 57-2] gi|324012952|gb|EGB82171.1| hypothetical protein HMPREF9533_03020 [Escherichia coli MS 60-1] Length = 615 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 100/287 (34%), Positives = 151/287 (52%), Gaps = 9/287 (3%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQK 190 A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L E Sbjct: 315 AAYDNELVEAVKRFQTWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTELS 374 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 375 TG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 431 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKIN 306 +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q PG N Sbjct: 432 ARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRN 491 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 ++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 492 SLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDK 550 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 551 RISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|161503876|ref|YP_001570988.1| hypothetical protein SARI_01965 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865223|gb|ABX21846.1| hypothetical protein SARI_01965 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 644 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 99/293 (33%), Positives = 155/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ Sbjct: 338 PAPAVRAAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRL 397 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 398 LPAELSTG---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPW 454 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q Sbjct: 455 NVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQ 514 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S + Y+HDTP LF R +SGCVRV +L LL+D Sbjct: 515 APGARNSLGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKAPELANMLLQDA 574 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 575 -GWNDARISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 626 >gi|323174974|gb|EFZ60589.1| putative peptidoglycan binding domain protein [Escherichia coli LT-68] Length = 615 Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 100/293 (34%), Positives = 153/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 G N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 ASGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|309701201|emb|CBJ00501.1| putative exported protein [Escherichia coli ETEC H10407] Length = 615 Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 100/293 (34%), Positives = 153/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 G N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 ASGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|295688991|ref|YP_003592684.1| ErfK/YbiS/YcfS/YnhG family protein [Caulobacter segnis ATCC 21756] gi|295430894|gb|ADG10066.1| ErfK/YbiS/YcfS/YnhG family protein [Caulobacter segnis ATCC 21756] Length = 468 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 102/337 (30%), Positives = 166/337 (49%), Gaps = 22/337 (6%) Query: 81 AIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAY 137 + Y+ + ++GGW +P P L G V+ LR RL + DP+ L+ + +DA Sbjct: 142 GLTTYRGLAAKGGWRVVPAGPSLTEGLVDPRVKALRARLAVE---DPTVALTGSDVYDAA 198 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + AV+ Q R GL+P G+V TL A+NVPV+ R+ Q++ N+ R + L Q + + Sbjct: 199 LVQAVQRAQKRFGLNPDGVVGPGTLNALNVPVERRVDQIEANMERWR-WLPQTLPADRIQ 257 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VNI AA + + L + GR +TP+L S I+ I+ NP W +P+SI K++ Sbjct: 258 VNIAAAVMSVFQQDTPTLTMRAVTGRPGDETPMLSSMIHSIVLNPPWNVPQSIATKELWP 317 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 + +P YL N+ + + D S +Q G A+ K +F + Sbjct: 318 KEKANPGYLARNDF---------IVIPTGDGGS------RLQQKAGPKAALGQVKFDFNN 362 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 Y+HDTP F++ R + GCVR++ I+L ++ P W+ I+ + + T Sbjct: 363 PYGVYLHDTPSRSKFDSFSRLASHGCVRLQKPIELIKLMMAGDPVWTPEKIDATLASGDT 422 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 KL ++ V +Y +A+ D + FRDD YG D Sbjct: 423 VRAKLPQQMAVFLLYWTAYVTPDGQVNFRDDPYGWDK 459 >gi|251789271|ref|YP_003003992.1| hypothetical protein Dd1591_1660 [Dickeya zeae Ech1591] gi|247537892|gb|ACT06513.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya zeae Ech1591] Length = 563 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 110/350 (31%), Positives = 180/350 (51%), Gaps = 24/350 (6%) Query: 94 WPELPIR-PLHLGNSSVSVQRLRERLIISGDLD------------PSKGLSVA--FDAYV 138 WP+L + L G+ S ++ L+E L+ +G L + G + A +D + Sbjct: 209 WPKLVLADSLRPGDESNALPVLQEILLRTGMLSQDSAAMPLFNDATAAGNTAALRYDGEM 268 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 AVK FQ GL G++ T + +NV +R L +N+ R++ L+ K+ ++V Sbjct: 269 VEAVKRFQHSQGLLDDGVIGKRTRDWLNVSSQMRAALLALNIQRLR-LVPDKVS-SGIVV 326 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 NIP SL +NG L S VIVG+ R+TP++ S ++ ++ NP W +P ++ ++D++ Sbjct: 327 NIPNYSLSYYQNGAEILSSRVIVGQPKRKTPLMSSSLSNVVMNPPWNVPTTLTRQDIIPK 386 Query: 259 LRQDPQYLKDNNIHMID---EKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKI 313 + QDP YL+ + ++ + + + +DW NF + RQ PG N++ K Sbjct: 387 VIQDPGYLQRHGYTVLSGWTDSAQPIDPSMIDWPMMSAGNFPYRLRQAPGDSNSLGRYKF 446 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + ++ Y+HDTP LF +R +SGCVRV +L LL+D W+ I ++ Sbjct: 447 NMPNTDSIYLHDTPNHNLFQKDIRALSSGCVRVNKASELAALLLQDA-GWNNARISSTLE 505 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-VHVGIIPL 422 TT V + VPV+F Y++AW D QFR DIY D+ V G + L Sbjct: 506 QGNTTYVAVRQRVPVNFYYLTAWVADDGKPQFRTDIYNYDDTVKTGTLAL 555 >gi|325106518|ref|YP_004276172.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter saltans DSM 12145] gi|324975366|gb|ADY54350.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter saltans DSM 12145] Length = 548 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 98/316 (31%), Positives = 160/316 (50%), Gaps = 16/316 (5%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + +G+SS ++ ++R+RL GD S LS +DA ++ AV FQ RHGL G++ + Sbjct: 242 KSYKIGDSSDNIVKIRKRLHFLGDYKESDTLSALYDANLKEAVSNFQERHGLTNDGVIGA 301 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 T++ MNVP+ R++ + VN+ R + + + Y+ VNIP L + V Sbjct: 302 GTIKEMNVPLRDRVKTIIVNMERFR-WVPAGLNKEYLGVNIPEYKLHVYNADSLLWSCNV 360 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 +VG+ +T + + I+F+PYW +P SI++ +++ + ++ YLK +N+ Sbjct: 361 VVGKELHKTVVFQGDLKYIVFSPYWNVPPSIVRNEILPAMNRNAGYLKQHNM-------- 412 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 E+ + P + RQ PGK N++ K F + N Y+HDTP LF+ R Sbjct: 413 -----EITGHENGLP--VIRQLPGKDNSLGLVKFLFPNNFNIYLHDTPAKSLFSMEDRAF 465 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 + GC+RV L +LLKD W I++ + K V L VPV Y +A+ + Sbjct: 466 SHGCIRVSEPKKLAEFLLKDDKAWDSISIDKAMHQTKEKWVTLKNPVPVFISYFTAFVDR 525 Query: 400 DSIIQFRDDIYGLDNV 415 I FR DIY D+ Sbjct: 526 KGQINFRKDIYDRDSA 541 >gi|320196581|gb|EFW71204.1| L,D-transpeptidase YcbB [Escherichia coli WV_060327] Length = 611 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 100/293 (34%), Positives = 154/293 (52%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A++ + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 305 PAPVVRAAYENELVEAVKRFQTWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 364 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 365 LPTELSTG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 421 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 422 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 481 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 482 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 541 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 542 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 593 >gi|329298736|ref|ZP_08256072.1| murein L,D-transpeptidase [Plautia stali symbiont] Length = 590 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 106/323 (32%), Positives = 168/323 (52%), Gaps = 13/323 (4%) Query: 101 PLHLGNSSVSVQRLRERL-IISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 P+ + S+ SV L ++ SG++ PS +V +D+ + VK FQ L G Sbjct: 255 PVAVSPSATSVSDLPAQVPQASGNISTVTPSASNNV-YDSTLVEGVKRFQHWQELADDGA 313 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 + T E +NV +R L +N+ R++ LL M ++VNIP SL NG L Sbjct: 314 IGPRTREWLNVSPQMRAALLALNIQRLR-LLPDDMH-NGIMVNIPNYSLTYYNNGNTILS 371 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 S VIVGR DR+TP++ S +N ++ NP W +P +++++D++ ++QDP YL + ++ Sbjct: 372 SRVIVGRPDRKTPLMRSALNNVVLNPPWNVPTTLVRQDIVPKVKQDPSYLYKHGYTLLSG 431 Query: 277 KGKEVFVEE---VDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 + V + +DW+ +F + RQ PG N++ K S + Y+HDTP L Sbjct: 432 WSADAEVIDPSVIDWHMVSAASFPYRIRQAPGASNSLGRYKFNMPSSDAIYLHDTPNHGL 491 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 F +R +SGCVRV +L LL+D W+ I + +K T V + +PV+ Sbjct: 492 FQRDIRALSSGCVRVNKASELADLLLQDA-GWNDSRISDTLKQGDTRYVPIRHRIPVNLY 550 Query: 392 YISAWSPKDSIIQFRDDIYGLDN 414 Y++AW D Q+R DIY DN Sbjct: 551 YLTAWVADDGQPQYRTDIYNYDN 573 >gi|197334392|ref|YP_002155958.1| cell wall degradation protein [Vibrio fischeri MJ11] gi|197315882|gb|ACH65329.1| cell wall degradation protein [Vibrio fischeri MJ11] Length = 512 Score = 159 bits (403), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 104/329 (31%), Positives = 175/329 (53%), Gaps = 25/329 (7%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV------AFDAYVESAVKLFQMRHGLD 152 IRP N V + RL +SG+++ + + +D+ + +K FQ RHGL Sbjct: 188 IRP----NQFTDVNAIIYRLQVSGEINHQEAEMLLRQSNGHYDSSLVLIIKEFQKRHGLK 243 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G++ TL +N+ R+R + +N+ R++ L E K +VLVNIP+ + + G+ Sbjct: 244 QDGIIGPKTLHWLNMTAKERVRIMALNIQRLR-LWENKNS-HFVLVNIPSYEMAYWQEGE 301 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 + S VIVG+ +R+TPI +R+N I+FNP W +P I+++D++ + +L+ N Sbjct: 302 LVFTSKVIVGKPERRTPIFTTRLNAIVFNPEWKVPTKIMREDILPKALSNKDFLQSQNFE 361 Query: 273 MIDEK-GKEVF-VEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 +I KEV ++++DW F + +Q G NA+ K +RN Y+HDTP Sbjct: 362 IIPTWLSKEVISIDDIDWEQVNVETFPYKLKQKSGNTNALGRYKFNTPNRNAIYLHDTPS 421 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKD----TPTWSRYHIEEVVKTRKTTPVKLAT 384 LF+ R +SGC+RV + L+K+ T + YH E+ +T K T L Sbjct: 422 RSLFSKQHRAYSSGCIRVEKASEFAQLLMKESHFSTQDYKDYH--ELPETSKVT---LDQ 476 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 ++ V+ +Y ++W +D+ +QFR+DIY D Sbjct: 477 KISVYTIYQTSWVGEDNQVQFRNDIYKYD 505 >gi|83858763|ref|ZP_00952285.1| hypothetical protein OA2633_04651 [Oceanicaulis alexandrii HTCC2633] gi|83853586|gb|EAP91438.1| hypothetical protein OA2633_04651 [Oceanicaulis alexandrii HTCC2633] Length = 595 Score = 159 bits (403), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 116/410 (28%), Positives = 197/410 (48%), Gaps = 43/410 (10%) Query: 52 FDNFLARVDMGI-DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP---LHLGNS 107 D L R G+ D + ++ KA Y + GG+ ++P P L LG+S Sbjct: 175 LDQMLPRAGAGVLDYEQLSVTHPEYEDLIKARRTYDGYIKSGGFTQVP-EPEGLLELGDS 233 Query: 108 SVSVQRLRERLIISG--------------------------DLDPSKGLSVA-------- 133 S V+ LR RL G D + +S A Sbjct: 234 SPVVETLRVRLREEGYRIERPRRPSLMAESQPPLTQVSFITAPDAAAPVSAADWRREMQS 293 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 F +E+A++ FQ +GL+ G++ +T+ A+NV + ++ ++ NL R ++ +G Sbjct: 294 FSPELEAALRDFQAHNGLEVDGVLGPATIAALNVSAEDKLARIDANLERWRRA-SPDLGE 352 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 RYV VNIPA + AV +G L IVG RQTP++ +I I+ NP+W +P SI+ + Sbjct: 353 RYVEVNIPAYTARAVRDGDTELEMRSIVGLPARQTPLMSEQIEHIVANPHWYVPESILVR 412 Query: 254 DMMALLRQDPQYLKDNNIHMID-EKGKEVFVEEVDWNSPEPPNFI-FRQDPGKINAMAST 311 D ++ +R+D YL+D ++D + G+ + E +DW++ + + QDPG NA+ Sbjct: 413 DKLSHIREDEAYLEDRGYKVVDRDTGEPLSAETIDWSADGIADQVRLIQDPGDNNALGEL 472 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD-TPTWSRYHIEE 370 KI F ++++ Y+H TP LF R +SGC+R+ + + W+++ T + I + Sbjct: 473 KIMFPNQHSVYLHGTPSRHLFERDQRAFSSGCIRLEDPQAMAAWVVEAVTDQNAEAMIAQ 532 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 V + + + L +PVH VY + D + F D+Y D + +I Sbjct: 533 AVASGENQHIALDAPLPVHVVYRTVEVEDDGDVIFHHDVYDRDPALIALI 582 >gi|311747883|ref|ZP_07721668.1| peptidoglycan binding domain-containing protein [Algoriphagus sp. PR1] gi|126575877|gb|EAZ80187.1| peptidoglycan binding domain-containing protein [Algoriphagus sp. PR1] Length = 562 Score = 159 bits (403), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 99/317 (31%), Positives = 163/317 (51%), Gaps = 4/317 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGL-SVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L +G+ + SV +LRERL G LD + + FD+ + +K +Q+ +G+ P G + Sbjct: 228 QSLKVGDRNQSVPKLRERLQFWGFLDTYETEDELLFDSTMWEGLKKYQIENGMKPDGAIG 287 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 T +N + I VN+ R++ L E VLVNI L+ ++ G L + Sbjct: 288 DLTAGFLNDSPEKLIDIASVNMERMRWLPEINWDEELVLVNIANYQLDYLDKGDTTLSAK 347 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 VIVG+ ++P+ + ++ I+F+PYW IP SI Q +++ L+++ YL++ N+ ++ G Sbjct: 348 VIVGKEYNESPVFSAPMSYIVFSPYWNIPSSITQDEILPSLKKNKAYLQEKNMEVVSNTG 407 Query: 279 KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + + +V+W + F F RQ PG N++ K F + N Y+HDTP LF Sbjct: 408 EVLDPNKVNWKEKDGEEFPFRIRQKPGGSNSLGLVKFMFPNDYNIYIHDTPARSLFQRES 467 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R + GC+R++ LL+D W+ I E + VKL EVPV +Y++ W Sbjct: 468 RALSHGCIRIQYPDQFAKSLLRDK-KWTTEKISEAMHQENEEVVKLNREVPVLLLYLTFW 526 Query: 397 SPKDSIIQFRDDIYGLD 413 + FR DIY D Sbjct: 527 TDDKGQGHFRPDIYNRD 543 >gi|271500170|ref|YP_003333195.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech586] gi|270343725|gb|ACZ76490.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech586] Length = 567 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 106/361 (29%), Positives = 180/361 (49%), Gaps = 23/361 (6%) Query: 82 IAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD-------------PS 127 +A ++ + WP+L + L G+ S + LRE L+ +G L P Sbjct: 202 VALKDMLMDKRPWPKLMLADSLRPGDESNGLPVLREILLRTGMLSQNSAAMPLFNEASPG 261 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 + ++ + AVK FQ GL G++ T + +NV +R L +N+ R++ + Sbjct: 262 NASPLRYEGELVEAVKRFQHSQGLQDDGVIGKRTRDWLNVSSQMRATLLALNIQRLRLVP 321 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + ++VNIP SL ++G L S VIVG+ R+TP++ + ++ ++ NP W +P Sbjct: 322 DNVNS--GIMVNIPNYSLIYYQHGAEILSSRVIVGQPKRKTPLMSTSLSNVVMNPPWNVP 379 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMID---EKGKEVFVEEVDWNSPEPPNFIF--RQDP 302 ++ ++D++ + QDP YL+ + ++ E + + +DW NF + RQ P Sbjct: 380 TTLTRQDIIPKVIQDPGYLQRHGYTVLSDWTESAQPIDPSMIDWPMVSASNFPYRLRQAP 439 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ K + ++ Y+HDTP LF +R +SGCVRV +L LL+D Sbjct: 440 GDSNSLGRYKFNIPNTDSIYLHDTPNHALFQKDIRALSSGCVRVNKASELAALLLQDA-G 498 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-VHVGIIP 421 W+ I ++ TT V + +PV+F Y++AW D QFR DIY D+ V G + Sbjct: 499 WNNARISSTLEQGNTTYVAVRQRIPVNFYYLTAWVADDGKPQFRTDIYNYDDTVKTGALA 558 Query: 422 L 422 L Sbjct: 559 L 559 >gi|114767686|ref|ZP_01446383.1| peptidoglycan binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114540304|gb|EAU43401.1| peptidoglycan binding protein, putative [Roseovarius sp. HTCC2601] Length = 525 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 17/337 (5%) Query: 86 QDILSRGGWPE-LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + +++RGGW + + L G+S V LR+RLI G L P+ LS +D + AV Sbjct: 178 ERVIARGGWGAPVTVGKLDPGDSGPGVVILRDRLIEMGYLKPT--LSARYDDALRDAVLA 235 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKMGLRYVLVNIPAA 203 FQ HGL+ G+ SSTL A+NVP R++ + V + R + + +G R+VLVNI Sbjct: 236 FQGDHGLEADGVAGSSTLSAVNVPATERLKSVIVAMERERWINFADGLGERHVLVNIVDF 295 Query: 204 SLEAVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 +++GKV + +VG D R+TP + ++ NP W +PRSI+ + + LLR+ Sbjct: 296 HARIIDDGKVTFETRSVVGHQDPDRRTPEFSDVMEFMVINPSWYVPRSIVVNEYLPLLRR 355 Query: 262 DPQYLKDNNIHMIDEKGKEV-----FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 +P + +++ + D +G+ V F + + P F RQ PG NA+ K F Sbjct: 356 NPGAV--SHLVITDSRGRRVNRGNGFAQYSAASFP----FAMRQPPGPKNALGQVKFMFP 409 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 ++ N Y+HDTP LF R + GC+R+ + D LL ++ Sbjct: 410 NKYNIYLHDTPSKHLFARGQRTFSHGCIRLGDPKDFAYALLALQTDDPEGFFASRLRGGS 469 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + V L VPVH +Y +A++ + +R D+YG D Sbjct: 470 ESRVNLEQPVPVHLIYRTAFTQAKGRVNYRADVYGRD 506 >gi|110804934|ref|YP_688454.1| hypothetical protein SFV_0927 [Shigella flexneri 5 str. 8401] gi|110614482|gb|ABF03149.1| putative amidase [Shigella flexneri 5 str. 8401] Length = 615 Score = 159 bits (403), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 152/293 (51%), Gaps = 9/293 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLLYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ EVDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWEVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +S CVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSDCVRVNKASDLANMLLQDA 545 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 -GWNDKRISDARKQGDTRYVNIRQSIPVNLYYLTAFVGADDRTQYRTDIYNYD 597 >gi|56413956|ref|YP_151031.1| hypothetical protein SPA1803 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362879|ref|YP_002142516.1| hypothetical protein SSPA1676 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128213|gb|AAV77719.1| putative exported protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094356|emb|CAR59868.1| putative exported protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 615 Score = 159 bits (402), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 152/286 (53%), Gaps = 9/286 (3%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 316 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 375 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 376 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 432 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 433 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWTTITPSNLPFRFQQAPGAHNS 492 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 493 LGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 551 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 552 ISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|290473860|ref|YP_003466734.1| putative carboxypeptidasewith PGDB-like domain [Xenorhabdus bovienii SS-2004] gi|289173167|emb|CBJ79940.1| putative carboxypeptidasewith PGDB-like domain [Xenorhabdus bovienii SS-2004] Length = 572 Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 106/337 (31%), Positives = 167/337 (49%), Gaps = 13/337 (3%) Query: 86 QDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDP--SKGLSVAFDAYVESAV 142 + + + W + ++ L G +S SV LRE LI S LD K + ++ + +AV Sbjct: 220 KQLADKQQWSDFSMKGTLRPGQNSESVVALREILIRSDTLDSLTVKPENKVYNKELVAAV 279 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVNIP 201 K FQ HGL G++ ST +N R R + +N+ R++ + + G +LVNIP Sbjct: 280 KRFQALHGLSADGVIGQSTKVWLNTTPQTRARIMALNIQRLRIIPDNIPTG---ILVNIP 336 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 SL +GK L S V+VGR R+TPI+ S +N ++ NP W +P S+ +KD+ + Sbjct: 337 NYSLFYYLDGKEVLNSKVVVGRPSRKTPIMSSNLNNVVINPPWTVPTSMTRKDIAPRAMR 396 Query: 262 DPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFY 316 DP Y + + + V ++W+ P NF + RQ PG N++ K Sbjct: 397 DPSYFRSRGYTVFSSWSNDAKVIDPSSINWDVTTPNNFPYRIRQAPGPTNSLGRFKFNMP 456 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 + Y+HDTP F +R +SGCVRV +L LL + W++ + +KT Sbjct: 457 NSEAIYLHDTPNQASFGREMRAVSSGCVRVNKAPELANMLLGNA-GWNKDRVSNSLKTWT 515 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 T V + ++PV Y +AW + + Q+R DIY D Sbjct: 516 TAYVNIPKKIPVFLYYQTAWVDEGGVPQYRADIYDYD 552 >gi|197248211|ref|YP_002145913.1| hypothetical protein SeAg_B1001 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211914|gb|ACH49311.1| YcbB [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 615 Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 152/286 (53%), Gaps = 9/286 (3%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 316 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 375 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 376 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 432 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 433 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWTTITPSNLPFRFQQAPGAHNS 492 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 493 LGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 551 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 552 ISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|218688768|ref|YP_002396980.1| hypothetical protein ECED1_0955 [Escherichia coli ED1a] gi|218426332|emb|CAR07157.1| putative exported enzyme [Escherichia coli ED1a] Length = 615 Score = 159 bits (401), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 151/287 (52%), Gaps = 9/287 (3%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQK 190 A++ + AVK FQ GL G + +T + +NV R L +N+ R++ L E Sbjct: 315 AAYENELVEAVKRFQTWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTELS 374 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 375 TG---IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 431 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKIN 306 +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q PG N Sbjct: 432 ARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRN 491 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 ++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 492 SLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWNDK 550 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 551 RISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|292487843|ref|YP_003530718.1| hypothetical protein EAMY_1360 [Erwinia amylovora CFBP1430] gi|292899070|ref|YP_003538439.1| peptidoglycan binding protein [Erwinia amylovora ATCC 49946] gi|291198918|emb|CBJ46028.1| putative peptidoglycan binding protein [Erwinia amylovora ATCC 49946] gi|291553265|emb|CBA20310.1| Uncharacterized protein ycbB [Erwinia amylovora CFBP1430] Length = 615 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 147/278 (52%), Gaps = 8/278 (2%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 A+K FQ GL+ G + T + +NV R L +N+ R++ LL M ++VNI Sbjct: 323 ALKRFQRWQGLEADGAIGLRTRQWLNVSPPQRATLLALNIQRLR-LLPDDMH-NGIMVNI 380 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P SL NG+ L S VIVGR DR+TP++ S +N ++ NP W +P ++++KD++ ++ Sbjct: 381 PNYSLAYYVNGREILSSRVIVGRPDRKTPLMRSALNNVVLNPPWNVPTTLVRKDIVPKVK 440 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEE---VDWNSPEPPNFIF--RQDPGKINAMASTKIEF 315 QDP YL + ++ E V + ++W+ +F + RQ PG N++ K Sbjct: 441 QDPMYLYKHGYTLLAGWSNEAEVVDPSMINWSMVSAASFPYRIRQAPGPTNSLGRYKFNM 500 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 S + Y+HDTP LF +R +SGCVRV DL LL D W I +K Sbjct: 501 PSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNRASDLANLLLHDV-GWDDARISGTLKEG 559 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 T V + +PV+ Y++AW +D + QFR DIY D Sbjct: 560 NTRFVPIRHRIPVNLYYLTAWVAEDGLPQFRTDIYNYD 597 >gi|126729661|ref|ZP_01745474.1| peptidoglycan binding protein, putative [Sagittula stellata E-37] gi|126709780|gb|EBA08833.1| peptidoglycan binding protein, putative [Sagittula stellata E-37] Length = 540 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 102/333 (30%), Positives = 172/333 (51%), Gaps = 17/333 (5%) Query: 92 GGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GGW P + L G S +V LR RL+ L PS L+ +D + +AV+ Q HG Sbjct: 198 GGWGPVVQASSLEPGESGQAVVALRNRLVAMNYLKPS--LTTRYDEDMTAAVRAVQEDHG 255 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE-QKMGLRYVLVNIPAASLEAVE 209 L+ G+ +STL A+N + R++ + V + R + L + G R+VLVN+ + ++ Sbjct: 256 LNVDGVAGASTLRAINAAPEERLKSIMVAMERERWLNSPEGRGKRHVLVNLVDFHAQIID 315 Query: 210 NGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 + KV + ++G+ +TP + ++ NPYW +PRSII + + LLR +P Sbjct: 316 DDKVTFETRSVIGQNQSTHRTPEFSDTMEHMVINPYWYVPRSIIVNEYLPLLRSNPG--A 373 Query: 268 DNNIHMIDEKGKEV-----FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY 322 ++ +ID +G+ V F + + P + RQ PG NA+ + K F ++ N Y Sbjct: 374 AGHLEIIDGRGRVVSRGQSFAQYSGRSFP----YSMRQRPGPRNALGTVKFMFPNKYNIY 429 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL 382 +HDTP LF+ VR + GCVR+ + D LL + ++++ + T V L Sbjct: 430 LHDTPSQSLFSREVRTFSHGCVRLNDPHDFAYALLSRQERDPVNFFQSILRSGQNTKVPL 489 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 A +PVH +Y +A++ + +R+D+YG D + Sbjct: 490 AEPIPVHLIYRTAFTQAKGNVNYRNDVYGRDEI 522 >gi|312171965|emb|CBX80222.1| Uncharacterized protein ycbB [Erwinia amylovora ATCC BAA-2158] Length = 615 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 147/278 (52%), Gaps = 8/278 (2%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 A+K FQ GL+ G + T + +NV R L +N+ R++ LL M ++VNI Sbjct: 323 ALKRFQRWQGLEADGAIGLRTRQWLNVSPPQRATLLALNIQRLR-LLPDDMH-NGIMVNI 380 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P SL NG+ L S VIVGR DR+TP++ S +N ++ NP W +P ++++KD++ ++ Sbjct: 381 PNYSLAYYVNGREILSSRVIVGRPDRKTPLMRSALNNVVLNPPWNVPTTLVRKDIVPKVK 440 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEE---VDWNSPEPPNFIF--RQDPGKINAMASTKIEF 315 QDP YL + ++ E V + ++W+ +F + RQ PG N++ K Sbjct: 441 QDPMYLYKHGYTLLAGWSNEAEVVDPSMINWSMVSAASFPYRIRQAPGPTNSLGRYKFNM 500 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 S + Y+HDTP LF +R +SGCVRV DL LL D W I +K Sbjct: 501 PSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNRASDLANLLLHDV-GWDDARISGTLKEG 559 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 T V + +PV+ Y++AW +D + QFR DIY D Sbjct: 560 NTRFVPIRHRIPVNLYYLTAWVAEDGLPQFRTDIYNYD 597 >gi|121592583|ref|YP_984479.1| peptidoglycan-binding domain-containing protein [Acidovorax sp. JS42] gi|120604663|gb|ABM40403.1| Peptidoglycan-binding domain 1 protein [Acidovorax sp. JS42] Length = 533 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 112/351 (31%), Positives = 167/351 (47%), Gaps = 22/351 (6%) Query: 82 IAFYQDILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDP-------SKGL 130 +A Y+ + + W P LP R L G + L ERL+ GDL P + Sbjct: 158 LAQYRAMGAHPAWAQPLPALPGRKLTPGQPWEGLGVLAERLVALGDLPPQPTGEPPAASA 217 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ--LQVNLMRIKKLLE 188 + + AV FQ RHGL+ G++ ++TL A+NVP R Q LQ+ +R +L+ Sbjct: 218 PAQYAPALVEAVTAFQRRHGLEADGVLGATTLAALNVPPAARAEQIALQMERLRWTPVLQ 277 Query: 189 QKMGLRYVLVNIPAASLEAVE--NGKVGLRST--VIVGR-VDRQTPILHSRINRIMFNPY 243 G R + VN+P L A E G++ LR + VIVG+ +D +TP+ + I F+PY Sbjct: 278 ---GPRMIAVNVPEYRLRAYEYAGGRITLRLSMAVIVGKALDTRTPLFDEDMQSIEFSPY 334 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W IP SI + +++ LR+DP YL + + G + RQ PG Sbjct: 335 WNIPPSIARGEIVPRLRRDPGYLARQGMEFVSAAGVSTDATPEMLGAVLAGQARIRQRPG 394 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 +NA+ K + +N Y+H T P LF R + GCVRV + L ++L+D PTW Sbjct: 395 PLNALGDIKFVLPNNDNIYLHHTSAPTLFGRSRRDLSHGCVRVEEPVALAQFVLQDDPTW 454 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + I + K V+L VPV +I+ +D F D+YG D Sbjct: 455 TVERIRAAMAQPKPVFVRLPHPVPVIITHITVVV-QDGRPHFYGDLYGHDR 504 >gi|226946156|ref|YP_002801229.1| petidoglycan binding protein [Azotobacter vinelandii DJ] gi|226721083|gb|ACO80254.1| petidoglycan binding protein [Azotobacter vinelandii DJ] Length = 530 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 92/280 (32%), Positives = 145/280 (51%), Gaps = 3/280 (1%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 A+K FQ +H LD G+V +TL +NV R+ Q++VNL R + L ++M +LV++ Sbjct: 250 AMKRFQAKHFLDDDGVVGPATLTELNVTPAERLAQVRVNLERFR-WLAREMEPTLLLVDV 308 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 A L + + ++ VGR R TP+L S++ + NP W +P +I+++D + +R Sbjct: 309 AGAQLTFFHDHQPRWQTRTQVGRPTRPTPLLKSQVTHLTLNPTWTVPPTILREDKLPRIR 368 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 ++ +L N+ +ID +GKE+ VDW++P + RQDPG N + I F + Sbjct: 369 RNIGFLASQNLRVIDRQGKELNPRNVDWHNPS--GIMLRQDPGPHNPLGRIAIRFPNPFA 426 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP LF R +SGCVRV + L LL+ R EE++ + KT + Sbjct: 427 VYLHDTPSQHLFAKETRTLSSGCVRVERAMQLTDLLLEGASPAERQRFEEILASGKTRNL 486 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 L VP+ Y + + FR DIY D V + Sbjct: 487 NLPRPVPILLAYWTVQVDDGGQLVFRPDIYAHDGKLVAAL 526 >gi|167553003|ref|ZP_02346753.1| YcbB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|194442554|ref|YP_002040193.1| hypothetical protein SNSL254_A1028 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401217|gb|ACF61439.1| YcbB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|205322472|gb|EDZ10311.1| YcbB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 615 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 152/286 (53%), Gaps = 9/286 (3%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 316 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 375 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 376 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 432 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 433 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 492 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 493 LGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 551 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 552 ISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|283833784|ref|ZP_06353525.1| putative periplasmic protein [Citrobacter youngae ATCC 29220] gi|291070449|gb|EFE08558.1| putative periplasmic protein [Citrobacter youngae ATCC 29220] Length = 583 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 109/330 (33%), Positives = 169/330 (51%), Gaps = 13/330 (3%) Query: 94 WPEL-PIRPLHLGNSSVSVQRLRERLIISGDLD-----PSKGLSVAFDAYVESAVKLFQM 147 WP+L L G S + LRE L +G L+ +K A+ + + AVK FQ Sbjct: 239 WPQLTSTSTLRPGEWSNDIPALREILRRTGMLESVVSTAAKEGRSAYGSELVEAVKRFQT 298 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 GL G + +T + +NV R L +N+ R++ LL + ++VNIPA SL Sbjct: 299 WQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLR-LLPGDLSTG-IMVNIPAYSLVY 356 Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ Sbjct: 357 YQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLE 416 Query: 268 DNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINAMASTKIEFYSRNNTYM 323 + ++ + ++ +VDW + N F F+Q PG N++ K S + Y+ Sbjct: 417 RHGYTVMRGWNSKETIDPWQVDWATITASNLPFRFQQAPGARNSLGRYKFNMPSSDAIYL 476 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 HDTP LF R +SGCVRV +L LL+D W+ I + +K T V + Sbjct: 477 HDTPNHNLFQKDTRALSSGCVRVNKASELANMLLQDA-GWNDTRISDALKQGDTRYVNIR 535 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +PV+ Y++A+ D Q+R DIY D Sbjct: 536 QNIPVNLYYLTAFVGADGRTQYRTDIYNYD 565 >gi|168243764|ref|ZP_02668696.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449643|ref|YP_002044987.1| hypothetical protein SeHA_C1093 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194407947|gb|ACF68166.1| YcbB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205337184|gb|EDZ23948.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 606 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 152/286 (53%), Gaps = 9/286 (3%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 307 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 366 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 367 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 423 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 424 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 483 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 484 LGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 542 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 543 ISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 588 >gi|200389383|ref|ZP_03215994.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199601828|gb|EDZ00374.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 615 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 152/286 (53%), Gaps = 9/286 (3%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 316 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 375 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 376 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 432 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 433 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 492 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 493 LGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 551 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 552 ISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|16764355|ref|NP_459970.1| hypothetical protein STM0995 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167994946|ref|ZP_02576036.1| YcbB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16419508|gb|AAL19929.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327278|gb|EDZ14042.1| YcbB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|267992734|gb|ACY87619.1| hypothetical protein STM14_1125 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157538|emb|CBW17028.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911981|dbj|BAJ35955.1| hypothetical protein STMDT12_C10120 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223319|gb|EFX48388.1| L,D-transpeptidase YcbB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129260|gb|ADX16690.1| putative L,D-transpeptidase YcbB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987886|gb|AEF06869.1| hypothetical protein STMUK_0961 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 613 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 152/286 (53%), Gaps = 9/286 (3%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 314 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 373 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 374 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 430 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 431 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 490 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 491 LGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 549 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 550 ISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 595 >gi|94967237|ref|YP_589285.1| peptidoglycan binding domain-containing protein [Candidatus Koribacter versatilis Ellin345] gi|94549287|gb|ABF39211.1| Peptidoglycan-binding domain 1 [Candidatus Koribacter versatilis Ellin345] Length = 625 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 104/329 (31%), Positives = 165/329 (50%), Gaps = 17/329 (5%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY---VESAVKLFQMRHGLDP 153 +P + L G + RL L + GDL P+ + A D Y + AVK +Q RHGL Sbjct: 287 VPTKALDPGKPYAGIPRLTSLLHLLGDL-PADAVVPAGDVYQAPLVDAVKRYQSRHGLTA 345 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE-NGK 212 G + + T++ +N P+ R+ QL++ L R + L Q+ V+VNIP L A + N K Sbjct: 346 DGRLGAQTVKELNTPLSTRVEQLRLTLERWR-WLPQEFPQPPVVVNIPEFRLRAYDANHK 404 Query: 213 VGLRSTVIVGRVDR-QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 V L V+VG+ R +TP+ + ++F PYW +P SI + +++ +++D Y+ N Sbjct: 405 VVLSMNVVVGKALRHETPVFDDEMKYVVFRPYWNVPPSIQRSEIVPAIQRDRDYISKKNY 464 Query: 272 HMIDEKGKEVFVEEVD---WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 + + G+ V + RQ PG NA+ K+ F ++ N Y+H TP Sbjct: 465 EVTTQAGQVVTSGTISDEVLQQLRAGKLAVRQKPGPTNALGLVKLIFPNQYNVYLHSTPS 524 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP----VKLAT 384 LF+ R + GC+RV +L W L+D P W+ +E V + P V L+ Sbjct: 525 QQLFSQARRDFSHGCIRVEKPAELSAWALQDKPEWT---VERVRAAMQKGPDNVQVNLSK 581 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 VPV +Y +A + +D + F DD+YG D Sbjct: 582 PVPVLILYGTAVAEEDGSVHFFDDLYGYD 610 >gi|161614766|ref|YP_001588731.1| hypothetical protein SPAB_02518 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161364130|gb|ABX67898.1| hypothetical protein SPAB_02518 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 615 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 152/286 (53%), Gaps = 9/286 (3%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 316 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 375 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 376 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 432 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 433 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 492 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 493 LGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 551 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 552 ISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|238913232|ref|ZP_04657069.1| hypothetical protein SentesTe_19204 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 615 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 152/286 (53%), Gaps = 9/286 (3%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 316 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 375 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 376 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 432 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 433 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 492 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 493 LGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 551 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 552 ISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|204929796|ref|ZP_03220817.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320790|gb|EDZ05991.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322616425|gb|EFY13334.1| hypothetical protein SEEM315_12488 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619675|gb|EFY16550.1| hypothetical protein SEEM971_17482 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622629|gb|EFY19474.1| hypothetical protein SEEM973_13475 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629778|gb|EFY26553.1| hypothetical protein SEEM974_05176 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632500|gb|EFY29246.1| hypothetical protein SEEM201_14855 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637005|gb|EFY33708.1| hypothetical protein SEEM202_02080 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641456|gb|EFY38094.1| hypothetical protein SEEM954_01508 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646078|gb|EFY42594.1| hypothetical protein SEEM054_01025 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649619|gb|EFY46050.1| hypothetical protein SEEM675_16024 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654079|gb|EFY50402.1| hypothetical protein SEEM965_12727 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658611|gb|EFY54873.1| hypothetical protein SEEM19N_16592 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663468|gb|EFY59670.1| hypothetical protein SEEM801_11882 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670204|gb|EFY66344.1| hypothetical protein SEEM507_18659 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671440|gb|EFY67562.1| hypothetical protein SEEM877_09668 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676796|gb|EFY72863.1| hypothetical protein SEEM867_07816 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682720|gb|EFY78739.1| hypothetical protein SEEM180_06862 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686400|gb|EFY82382.1| hypothetical protein SEEM600_05845 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195923|gb|EFZ81090.1| hypothetical protein SEEM581_13131 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199789|gb|EFZ84878.1| hypothetical protein SEEM501_09363 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202782|gb|EFZ87818.1| hypothetical protein SEEM460_08299 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209053|gb|EFZ93990.1| hypothetical protein SEEM020_20065 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209978|gb|EFZ94885.1| hypothetical protein SEEM6152_04835 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217987|gb|EGA02702.1| hypothetical protein SEEM0077_06119 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219019|gb|EGA03526.1| hypothetical protein SEEM0047_21870 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226592|gb|EGA10797.1| hypothetical protein SEEM0055_10100 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229788|gb|EGA13911.1| hypothetical protein SEEM0052_13157 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233013|gb|EGA17109.1| hypothetical protein SEEM3312_03109 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240748|gb|EGA24790.1| hypothetical protein SEEM5258_12719 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243064|gb|EGA27085.1| hypothetical protein SEEM1156_20569 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249773|gb|EGA33675.1| murein L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252754|gb|EGA36592.1| murein L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259168|gb|EGA42812.1| murein L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259991|gb|EGA43619.1| hypothetical protein SEEM8284_18068 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268008|gb|EGA51487.1| murein L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269856|gb|EGA53305.1| murein L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 615 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 152/286 (53%), Gaps = 9/286 (3%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 316 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 375 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 376 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 432 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 433 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 492 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 493 LGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 551 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 552 ISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|206576426|ref|YP_002239427.1| putative peptidoglycan binding protein [Klebsiella pneumoniae 342] gi|288936277|ref|YP_003440336.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella variicola At-22] gi|206565484|gb|ACI07260.1| putative peptidoglycan binding protein [Klebsiella pneumoniae 342] gi|288890986|gb|ADC59304.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella variicola At-22] Length = 596 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 112/347 (32%), Positives = 174/347 (50%), Gaps = 33/347 (9%) Query: 94 WPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA-------- 141 WP++ +RP G S + LRE L +G LD + + + D SA Sbjct: 238 WPQMTGSGSLRP---GEWSNDIGALREILQRTGMLDNTANIVLPGDVVSPSAKKKSKPAA 294 Query: 142 -----------VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 VK FQ GL G++ ST + +NV R L +N+ R++ LL K Sbjct: 295 RGVYDRQLVEGVKRFQAMQGLGADGVIGQSTRDWLNVSSAQRAGVLALNIQRLR-LLPGK 353 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 + ++VNIPA SL ++G L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 354 LSTG-IMVNIPAFSLVYYQDGSQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 412 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKIN 306 +KD++ +R +P YL+ + ++ + ++ VDW++ N F F+Q PG N Sbjct: 413 ARKDILPKVRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWSTITENNLPFRFQQAPGARN 472 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 ++ K S + Y+HDTP LF VR +SGCVRV +L LL+D W+ Sbjct: 473 SLGRYKFNMPSSDAIYLHDTPNHNLFQKDVRALSSGCVRVNKASELANMLLQDA-GWNDT 531 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 532 RISDALKQGDTRYVNIRQNIPVNLYYLTAFVDADGRTQYRTDIYNYD 578 >gi|77459598|ref|YP_349105.1| hypothetical protein Pfl01_3376 [Pseudomonas fluorescens Pf0-1] gi|77383601|gb|ABA75114.1| putative exported protein [Pseudomonas fluorescens Pf0-1] Length = 537 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 100/315 (31%), Positives = 155/315 (49%), Gaps = 15/315 (4%) Query: 111 VQRLRERLIISGDLDPSKGL-SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 V L RL G L+ G A+ + AVK FQ H L G+V T+ +N+ Sbjct: 229 VPELARRLYSEGYLNSVAGTPDNAYHGVLVEAVKSFQANHSLQADGVVGPGTIAELNISP 288 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 R QL+VNL R + + Q M +LVN+ AA L + G ++ VGR +RQTP Sbjct: 289 LTRREQLRVNLERFR-WMAQDMEPDGLLVNVAAAELTLYQGGLPVWQTRTQVGRAERQTP 347 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 +L SR+ R+ NP W +P +I ++D + +R+D +L N+ ++D G+ + ++DW+ Sbjct: 348 LLKSRVTRLTLNPTWTVPPTIWKEDKLPEIRKDQTFLSRQNLQVLDANGQPLAAADIDWD 407 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 +P N + RQD G N + I F + + Y+HDTP LF+ R +SGCVRV + Sbjct: 408 NPG--NILLRQDAGPRNPLGQMVIRFPNPFSVYLHDTPSKALFDKGPRAFSSGCVRVEHP 465 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 + L LL + + ++ T T +L+ VP+ Y +A + + DI Sbjct: 466 MKLRDLLLSPA---EKARTDTLLATGVTHEFRLSNPVPILMTYWTAQVDGQGRVLYAPDI 522 Query: 410 Y--------GLDNVH 416 Y GLD H Sbjct: 523 YSRDSALLAGLDRAH 537 >gi|290510667|ref|ZP_06550037.1| ycbB [Klebsiella sp. 1_1_55] gi|289777383|gb|EFD85381.1| ycbB [Klebsiella sp. 1_1_55] Length = 596 Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 112/347 (32%), Positives = 174/347 (50%), Gaps = 33/347 (9%) Query: 94 WPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA-------- 141 WP++ +RP G S + LRE L +G LD + + + D SA Sbjct: 238 WPQMTGSGSLRP---GEWSNDIGALREILQRTGMLDNTANIVLPGDVVSPSAKKKSKPAA 294 Query: 142 -----------VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 VK FQ GL G++ ST + +NV R L +N+ R++ LL K Sbjct: 295 RGVYDRQLVEGVKRFQAMQGLGADGVIGQSTRDWLNVSSAQRAGVLALNIQRLR-LLPGK 353 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 + ++VNIPA SL ++G L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 354 LSTG-IMVNIPAFSLVYYQDGSQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 412 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKIN 306 +KD++ +R +P YL+ + ++ + ++ VDW++ N F F+Q PG N Sbjct: 413 ARKDILPKVRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWSTITENNLPFRFQQAPGARN 472 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 ++ K S + Y+HDTP LF VR +SGCVRV +L LL+D W+ Sbjct: 473 SLGRYKFNMPSSDAIYLHDTPNHNLFQKDVRALSSGCVRVNKASELANMLLQDA-GWNDT 531 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 532 RISDALKQGDTRYVNIRQNIPVNLYYLTAFVDADGRTQYRTDIYNYD 578 >gi|304397085|ref|ZP_07378964.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. aB] gi|304355234|gb|EFM19602.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. aB] Length = 603 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 97/287 (33%), Positives = 149/287 (51%), Gaps = 8/287 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + +AVK FQ GLD G + + T + +NV +R L +N+ R++ LL M Sbjct: 304 YDETLVAAVKRFQQWQGLDGDGAIGARTRQWLNVSPQMRASLLALNIQRLR-LLPDDMH- 361 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VNI SL G L S VIVGR DR+TP++ S +N ++ NP W +P ++++K Sbjct: 362 NGIMVNIANYSLIYYNKGNKILSSRVIVGRPDRKTPLMRSALNNVVLNPPWNVPTTLVRK 421 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIFR--QDPGKINAM 308 D++ ++ DP YL + ++ + V +DW +F +R Q PG+ NA+ Sbjct: 422 DIIPKVKLDPTYLYKHGYTLLSGWSADAEVIDPSMIDWRMVTASSFPYRLIQAPGEANAL 481 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K S + Y+HDTP LF +R +SGCVRV +L LL+D W+ I Sbjct: 482 GRYKFNMPSSDAIYLHDTPNHNLFQRDIRALSSGCVRVNKASELAGLLLQDA-GWNDARI 540 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 +K T V + +PV+ Y++AW D QFR DIY D+ Sbjct: 541 SSTLKEGDTRYVPIRHRIPVNLYYLTAWVADDGKPQFRTDIYNYDDT 587 >gi|330013904|ref|ZP_08307828.1| peptidoglycan binding domain protein [Klebsiella sp. MS 92-3] gi|328533309|gb|EGF60058.1| peptidoglycan binding domain protein [Klebsiella sp. MS 92-3] Length = 389 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 153/284 (53%), Gaps = 7/284 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + VK FQ GL G++ ST + +NV R L +N+ R++ LL K+ Sbjct: 91 YDRQLVEGVKRFQAMQGLGADGVIGQSTRDWLNVSSAQRAGVLALNIQRLR-LLPGKLST 149 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VNIPA SL ++G L S VIVGR DR+TP++ S +N ++ NP W +P ++ +K Sbjct: 150 G-IMVNIPAFSLVYYQDGSQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARK 208 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINAMA 309 D++ +R +P YL+ + ++ + ++ VDW++ N F F+Q PG N++ Sbjct: 209 DILPKVRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWSTITENNLPFRFQQAPGARNSLG 268 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K S + Y+HDTP LF VR +SGCVRV +L LL+D W+ I Sbjct: 269 RYKFNMPSSDAIYLHDTPNHNLFQKDVRALSSGCVRVNKASELANMLLQDA-GWNDTRIS 327 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 328 DALKQGDTRYVNIRQNIPVNLYYLTAFVDADGRTQYRTDIYNYD 371 >gi|260427999|ref|ZP_05781978.1| peptidoglycan-binding domain 1 protein [Citreicella sp. SE45] gi|260422491|gb|EEX15742.1| peptidoglycan-binding domain 1 protein [Citreicella sp. SE45] Length = 544 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 104/334 (31%), Positives = 170/334 (50%), Gaps = 17/334 (5%) Query: 89 LSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 ++ GGW + L G + V LR+RL+ L PS LS +D + +AV FQ Sbjct: 200 IAHGGWGATVRSGKLEPGQTGADVVALRDRLVAMNYLAPS--LSARYDDAIVAAVSRFQE 257 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKMGLRYVLVNIPAASLE 206 HGL G+ SSTL A+NV + R++ + V + R + L + + +G R++LVN+ Sbjct: 258 DHGLKVDGVAGSSTLSAINVGPEERLKSVIVAMERERWLNMPEGLGARHILVNLVDFHAR 317 Query: 207 AVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 +++GKV + +VG D R+TP R+ ++ NP W +PRSI+ + + LR++P Sbjct: 318 IIDDGKVSFETRSVVGHQDPDRRTPEFSDRMEFMVINPSWYVPRSIVVNEYLPQLRRNPG 377 Query: 265 YLKDNNIHMIDEKGKEV-----FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 + +++ + D G+ V F + + P + RQ PG NA+ + K F ++ Sbjct: 378 AV--SHLEITDSSGRRVNRGRGFAQYSAASFP----YAMRQPPGPRNALGTVKFMFPNKY 431 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 N Y+HDTP LFN R + GC+R+ + D LL + ++T T Sbjct: 432 NIYLHDTPSKSLFNQNQRTYSHGCIRLGDPHDFAYALLARQTDDPVGFFQSRLRTGSETR 491 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 V L VPVH +Y +A++ + +R D+YG D Sbjct: 492 VNLDEPVPVHLIYRTAFTKAKGQVNYRPDVYGRD 525 >gi|22126641|ref|NP_670064.1| hypothetical protein y2763 [Yersinia pestis KIM 10] gi|45441013|ref|NP_992552.1| hypothetical protein YP_1186 [Yersinia pestis biovar Microtus str. 91001] gi|51595771|ref|YP_069962.1| hypothetical protein YPTB1431 [Yersinia pseudotuberculosis IP 32953] gi|108806698|ref|YP_650614.1| hypothetical protein YPA_0701 [Yersinia pestis Antiqua] gi|108812731|ref|YP_648498.1| hypothetical protein YPN_2570 [Yersinia pestis Nepal516] gi|149366664|ref|ZP_01888698.1| putative exported protein [Yersinia pestis CA88-4125] gi|167470672|ref|ZP_02335376.1| hypothetical protein YpesF_22997 [Yersinia pestis FV-1] gi|170024879|ref|YP_001721384.1| hypothetical protein YPK_2654 [Yersinia pseudotuberculosis YPIII] gi|186894850|ref|YP_001871962.1| hypothetical protein YPTS_1533 [Yersinia pseudotuberculosis PB1/+] gi|218928555|ref|YP_002346430.1| hypothetical protein YPO1407 [Yersinia pestis CO92] gi|229841379|ref|ZP_04461538.1| predicted carboxypeptidase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843484|ref|ZP_04463630.1| predicted carboxypeptidase [Yersinia pestis biovar Orientalis str. India 195] gi|229895858|ref|ZP_04511028.1| predicted carboxypeptidase [Yersinia pestis Pestoides A] gi|229903136|ref|ZP_04518249.1| predicted carboxypeptidase [Yersinia pestis Nepal516] gi|284988613|ref|YP_001401528.2| hypothetical protein YpsIP31758_2563 [Yersinia pseudotuberculosis IP 31758] gi|21959653|gb|AAM86315.1|AE013879_5 putative amidase [Yersinia pestis KIM 10] gi|45435872|gb|AAS61429.1| putative exported protein [Yersinia pestis biovar Microtus str. 91001] gi|51589053|emb|CAH20671.1| putative exported protein [Yersinia pseudotuberculosis IP 32953] gi|108776379|gb|ABG18898.1| hypothetical protein YPN_2570 [Yersinia pestis Nepal516] gi|108778611|gb|ABG12669.1| hypothetical protein YPA_0701 [Yersinia pestis Antiqua] gi|115347166|emb|CAL20059.1| putative exported protein [Yersinia pestis CO92] gi|149291038|gb|EDM41113.1| putative exported protein [Yersinia pestis CA88-4125] gi|169751413|gb|ACA68931.1| Peptidoglycan-binding domain 1 protein [Yersinia pseudotuberculosis YPIII] gi|186697876|gb|ACC88505.1| Peptidoglycan-binding domain 1 protein [Yersinia pseudotuberculosis PB1/+] gi|229678906|gb|EEO75009.1| predicted carboxypeptidase [Yersinia pestis Nepal516] gi|229689831|gb|EEO81892.1| predicted carboxypeptidase [Yersinia pestis biovar Orientalis str. India 195] gi|229697745|gb|EEO87792.1| predicted carboxypeptidase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700781|gb|EEO88810.1| predicted carboxypeptidase [Yersinia pestis Pestoides A] gi|320015731|gb|ADV99302.1| putative carboxypeptidase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 618 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/280 (35%), Positives = 143/280 (51%), Gaps = 8/280 (2%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ GL G++ T E +NV R L +N+ R++ L ++VNI Sbjct: 326 AVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGHVDN--GIMVNI 383 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P SL ++G L S VIVGR R+TP++ S +N ++ NP W +P S++++D++ R Sbjct: 384 PNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSLVRQDIVPKAR 443 Query: 261 QDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF--RQDPGKINAMASTKIEF 315 D Y + N ++ + V +DW+ P NF + RQ PG N++ K Sbjct: 444 NDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPYRLRQAPGANNSLGRFKFNM 503 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 S + Y+HDTP LF +R +SGCVRV DL LL+D W+ + VK Sbjct: 504 PSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWNDARVSSKVKQG 562 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 TT V + VPV Y++AW +D QFR DIY D + Sbjct: 563 DTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYDKM 602 >gi|165924622|ref|ZP_02220454.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938929|ref|ZP_02227482.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. IP275] gi|166009934|ref|ZP_02230832.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. E1979001] gi|167399976|ref|ZP_02305494.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419803|ref|ZP_02311556.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|270486929|ref|ZP_06204003.1| conserved hypothetical protein [Yersinia pestis KIM D27] gi|294503394|ref|YP_003567456.1| hypothetical protein YPZ3_1284 [Yersinia pestis Z176003] gi|152960577|gb|ABS48038.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 31758] gi|165913076|gb|EDR31700.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923682|gb|EDR40814.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165991330|gb|EDR43631.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166962544|gb|EDR58565.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050684|gb|EDR62092.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|262365029|gb|ACY61586.1| hypothetical protein YPD8_0898 [Yersinia pestis D182038] gi|270335433|gb|EFA46210.1| conserved hypothetical protein [Yersinia pestis KIM D27] gi|294353853|gb|ADE64194.1| hypothetical protein YPZ3_1284 [Yersinia pestis Z176003] Length = 569 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/280 (35%), Positives = 143/280 (51%), Gaps = 8/280 (2%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ GL G++ T E +NV R L +N+ R++ L ++VNI Sbjct: 277 AVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGHVDN--GIMVNI 334 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P SL ++G L S VIVGR R+TP++ S +N ++ NP W +P S++++D++ R Sbjct: 335 PNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSLVRQDIVPKAR 394 Query: 261 QDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF--RQDPGKINAMASTKIEF 315 D Y + N ++ + V +DW+ P NF + RQ PG N++ K Sbjct: 395 NDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPYRLRQAPGANNSLGRFKFNM 454 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 S + Y+HDTP LF +R +SGCVRV DL LL+D W+ + VK Sbjct: 455 PSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWNDARVSSKVKQG 513 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 TT V + VPV Y++AW +D QFR DIY D + Sbjct: 514 DTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYDKM 553 >gi|162419158|ref|YP_001606446.1| hypothetical protein YpAngola_A1973 [Yersinia pestis Angola] gi|166211229|ref|ZP_02237264.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167424284|ref|ZP_02316037.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|162351973|gb|ABX85921.1| conserved hypothetical protein [Yersinia pestis Angola] gi|166207000|gb|EDR51480.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167057133|gb|EDR66896.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis str. K1973002] Length = 596 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/280 (35%), Positives = 143/280 (51%), Gaps = 8/280 (2%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ GL G++ T E +NV R L +N+ R++ L ++VNI Sbjct: 304 AVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGHVDN--GIMVNI 361 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P SL ++G L S VIVGR R+TP++ S +N ++ NP W +P S++++D++ R Sbjct: 362 PNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSLVRQDIVPKAR 421 Query: 261 QDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF--RQDPGKINAMASTKIEF 315 D Y + N ++ + V +DW+ P NF + RQ PG N++ K Sbjct: 422 NDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPYRLRQAPGANNSLGRFKFNM 481 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 S + Y+HDTP LF +R +SGCVRV DL LL+D W+ + VK Sbjct: 482 PSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWNDARVSSKVKQG 540 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 TT V + VPV Y++AW +D QFR DIY D + Sbjct: 541 DTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYDKM 580 >gi|218548441|ref|YP_002382232.1| hypothetical protein EFER_1069 [Escherichia fergusonii ATCC 35469] gi|218355982|emb|CAQ88598.1| putative exported enzyme [Escherichia fergusonii ATCC 35469] gi|324113744|gb|EGC07719.1| ykud domain-containing protein [Escherichia fergusonii B253] gi|325496863|gb|EGC94722.1| hypothetical protein ECD227_0960 [Escherichia fergusonii ECD227] Length = 615 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/292 (33%), Positives = 155/292 (53%), Gaps = 9/292 (3%) Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L Sbjct: 310 APAVRAAYDKELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLL 369 Query: 187 -LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 E G ++VNIPA SL ++G L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 370 PAELSTG---IMVNIPAYSLVYYQDGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWN 426 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQD 301 +P ++ +KD++ +R DP YL+ + ++ + ++ +VDW++ N F F+Q Sbjct: 427 VPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSKEAIDPWQVDWSTITASNLPFRFQQA 486 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG N++ K S + Y+HDTP LF R +SGCVRV +L LL+D Sbjct: 487 PGARNSLGRYKFNMPSTDAIYLHDTPNHNLFKRDTRALSSGCVRVNKASELANMLLQDA- 545 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 GWNDKRISDALKQGDTRYVNIRQTIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|238757635|ref|ZP_04618819.1| Peptidoglycan-binding domain 1 protein [Yersinia aldovae ATCC 35236] gi|238704140|gb|EEP96673.1| Peptidoglycan-binding domain 1 protein [Yersinia aldovae ATCC 35236] Length = 603 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 144/279 (51%), Gaps = 8/279 (2%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 +AVK FQ GL G++ T E +NV R L +N+ R++ L ++VN Sbjct: 310 AAVKRFQQWQGLTDDGVIGVRTREWLNVSPQTRATLLALNIQRLRILPGHVDN--GIMVN 367 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IP SL +NG L S VIVGR R+TP++ S +N ++ NP W +P S++++D++ Sbjct: 368 IPNYSLNYYKNGTQVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSLVRQDIVPKA 427 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEE---VDWNSPEPPNFIF--RQDPGKINAMASTKIE 314 R D Y + + ++ + V + +DW+ P NF + RQ PG N++ K Sbjct: 428 RYDSGYFQRHGYTVLSGWSNDAQVVDPSMIDWSMISPNNFPYRLRQAPGSSNSLGRFKFN 487 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 S + Y+HDTP LF +R +SGCVRV DL LL+D W+ + +K Sbjct: 488 MPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWNDARVSSTLKQ 546 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 TT V + +PV Y++AW +D QFR DIY D Sbjct: 547 GDTTYVNIRQRIPVQLYYLTAWVAEDGKPQFRTDIYNYD 585 >gi|293396754|ref|ZP_06641030.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291421018|gb|EFE94271.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 572 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/298 (32%), Positives = 150/298 (50%), Gaps = 11/298 (3%) Query: 126 PSKGLSVAFDAYVES---AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 P S+A + Y VK FQ GL G++ T E +NV +R L +N+ R Sbjct: 262 PPAAASMADNLYSSELVEGVKRFQKWQGLSTDGIIGVRTREWLNVSPQMRASLLALNIQR 321 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ +L ++ ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP Sbjct: 322 LR-ILPGRVS-NGIMVNIPNYSLVYYQNGNEVLSSRVIVGRPSRKTPMMSSALNNVVVNP 379 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF- 298 W +P +++++D++ +D Y + + ++ + V +DWN NF + Sbjct: 380 PWNVPTTLVREDIVPKAMRDANYFRKHGYTVLSGWSNDAEVIDPSMIDWNMVSARNFPYR 439 Query: 299 -RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 RQ PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL Sbjct: 440 IRQAPGATNSLGRFKFNMPSSDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASDLANMLL 499 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 +D W+ + +K TT V + +PV Y++AW D QFR DIY DN Sbjct: 500 QDA-GWNNSRVSSTLKQGNTTYVNVRQHIPVKLYYLTAWVSDDGKPQFRTDIYNYDNT 556 >gi|260575117|ref|ZP_05843118.1| Peptidoglycan-binding domain 1 protein [Rhodobacter sp. SW2] gi|259022739|gb|EEW26034.1| Peptidoglycan-binding domain 1 protein [Rhodobacter sp. SW2] Length = 531 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/330 (29%), Positives = 169/330 (51%), Gaps = 10/330 (3%) Query: 89 LSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 ++ GGW +P L G +V LR+RLI G L + + +DA ++ AV+ FQ+ Sbjct: 188 IASGGWGAAVPSGALKPGQDGPAVVALRDRLIRMGYL--HRTATAIYDADMQKAVQAFQL 245 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 HGL G+ + T+E +N+ + R + + V + R ++ + G R++ VN+ + + Sbjct: 246 AHGLTADGVAGTGTIEQINIGPEARWQSVVVAMER-ERWMNIDRGHRHIWVNLTDFTAKI 304 Query: 208 VENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 +++GKV S ++G+ DR++P + ++ NP W +PRSI ++ + +++++P Sbjct: 305 IDDGKVTFTSRSVIGKNAADRRSPEFSDMMEFMVINPSWSVPRSITTREYLPMMQRNPN- 363 Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYM 323 ++ +ID G+ V VD+ NF F RQ P NA+ K F + N Y+ Sbjct: 364 -AAGHLKLIDRAGRVVSRASVDFTRYTAANFPFAMRQAPSSGNALGLVKFMFPNPYNIYL 422 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 HDTP LF N VR + GC+R+ + D LL + E+ + + + LA Sbjct: 423 HDTPSKSLFANEVRDFSHGCIRLGSPFDFAYALLARQTDDPKGLFEQHLNGGGESRLDLA 482 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 VPVH VY +A+ + +R D+YG D Sbjct: 483 APVPVHLVYFTAFPGAKGQMNYRRDVYGRD 512 >gi|163731883|ref|ZP_02139330.1| peptidoglycan binding domain protein, putative [Roseobacter litoralis Och 149] gi|161395337|gb|EDQ19659.1| peptidoglycan binding domain protein, putative [Roseobacter litoralis Och 149] Length = 537 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 103/366 (28%), Positives = 182/366 (49%), Gaps = 11/366 (3%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQ 112 NF G +P + E A ++ + + ++++GGW P + + L G+S SV Sbjct: 160 NFAKSSPKGFFKALPPQTGEYNALRKQKLVL-EGLIAKGGWGPTVKAKKLEPGDSGASVV 218 Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 LR+RL+ G L + + +D+ + AV FQ HGL G+V TL +N V+ R Sbjct: 219 ALRDRLVRMGYL--KRTATGTYDSTMTDAVMRFQADHGLAQDGVVGQGTLAEINTSVEKR 276 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTPI 230 ++ + V + R ++ + + G R++ VN+ + + ++NGKV + ++G D RQ+P Sbjct: 277 LQSVIVAMER-ERWVNKDRGKRHIEVNLTDFTAKIIDNGKVTFTTRSVIGARDAKRQSPE 335 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 + ++ NP W +PRSI + + L+Q+P + N++ + D G+++ VD+ Sbjct: 336 FSDVMEFMVINPSWFVPRSIAIGEYLPELQQNPNAV--NHLIITDRSGRQIDRTNVDFTK 393 Query: 291 PEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 F + RQ P + NA+ K F ++ N Y+HDTP LF R + GC+R+ + Sbjct: 394 YTARTFPYAMRQPPSRSNALGLVKFMFPNKYNIYLHDTPAKNLFGRETRAYSHGCIRLAD 453 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 + LL ++ + + T + L VPVH +Y +A + IQ+R D Sbjct: 454 PFEFAYALLAKQSNDPEGLFKKTLASGTETQLNLKKPVPVHIIYRTALANSKGQIQYRRD 513 Query: 409 IYGLDN 414 +YG D Sbjct: 514 VYGRDG 519 >gi|152969509|ref|YP_001334618.1| hypothetical protein KPN_00952 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954358|gb|ABR76388.1| putative amidase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 577 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 153/284 (53%), Gaps = 7/284 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + VK FQ GL G++ ST + +NV R L +N+ R++ LL K+ Sbjct: 279 YDRQLVEGVKRFQAMQGLGADGVIGQSTRDWLNVSSAQRAGVLALNIQRLR-LLPGKLST 337 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VNIPA SL ++G L S VIVGR DR+TP++ S +N ++ NP W +P ++ +K Sbjct: 338 G-IMVNIPAFSLVYYQDGSQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARK 396 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINAMA 309 D++ +R +P YL+ + ++ + ++ VDW++ N F F+Q PG N++ Sbjct: 397 DILPKVRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWSTITENNLPFRFQQAPGARNSLG 456 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K S + Y+HDTP LF VR +SGCVRV +L LL+D W+ I Sbjct: 457 RYKFNMPSSDAIYLHDTPNHNLFQKDVRALSSGCVRVNKASELANMLLQDA-GWNDTRIS 515 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 516 DALKQGDTRYVNIRQNIPVNLYYLTAFVDADGRTQYRTDIYNYD 559 >gi|238893981|ref|YP_002918715.1| hypothetical protein KP1_1925 [Klebsiella pneumoniae NTUH-K2044] gi|238546297|dbj|BAH62648.1| putative amidase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 596 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 153/284 (53%), Gaps = 7/284 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + VK FQ GL G++ ST + +NV R L +N+ R++ LL K+ Sbjct: 298 YDRQLVEGVKRFQAMQGLGADGVIGQSTRDWLNVSSAQRAGVLALNIQRLR-LLPGKLST 356 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VNIPA SL ++G L S VIVGR DR+TP++ S +N ++ NP W +P ++ +K Sbjct: 357 G-IMVNIPAFSLVYYQDGSQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARK 415 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINAMA 309 D++ +R +P YL+ + ++ + ++ VDW++ N F F+Q PG N++ Sbjct: 416 DILPKVRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWSTITENNLPFRFQQAPGARNSLG 475 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K S + Y+HDTP LF VR +SGCVRV +L LL+D W+ I Sbjct: 476 RYKFNMPSSDAIYLHDTPNHNLFQKDVRALSSGCVRVNKASELANMLLQDA-GWNDTRIS 534 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 535 DALKQGDTRYVNIRQNIPVNLYYLTAFVDADGRTQYRTDIYNYD 578 >gi|261339259|ref|ZP_05967117.1| hypothetical protein ENTCAN_05495 [Enterobacter cancerogenus ATCC 35316] gi|288319116|gb|EFC58054.1| putative periplasmic protein [Enterobacter cancerogenus ATCC 35316] Length = 607 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 116/354 (32%), Positives = 174/354 (49%), Gaps = 37/354 (10%) Query: 94 WPEL-PIRPLHLGNSSVSVQRLRERLIISGDLD------------------PSK------ 128 WP+L L G S V LRE L SG LD PS Sbjct: 239 WPQLRATATLRPGQWSSDVPALREILSRSGILDGGPNIALPGDDSQNVVVSPSAPVKEKK 298 Query: 129 --GLS---VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 GL+ A+D + +AVK FQ GL G++ ST + +NV R L +N+ R+ Sbjct: 299 AVGLNNKPAAYDRELVAAVKQFQAAQGLGADGVIGQSTRDWLNVSPAQRAGVLALNIQRL 358 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + LL + ++VNIPA SL ++G L S VIVGR DR+TP++ S +N ++ NP Sbjct: 359 R-LLPGTLSTG-IMVNIPAYSLVYYQDGNEVLASRVIVGRPDRKTPMMSSALNNVVVNPP 416 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPN--FIFR 299 W +P ++ +KD++ + DP YL+ + ++ + ++ VDW++ N F F+ Sbjct: 417 WNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPYMVDWSTITASNLPFRFQ 476 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG N++ K S + Y+HDTP LF R +SGCVRV +L LL+D Sbjct: 477 QAPGAHNSLGRYKFNMPSSDAIYLHDTPNHTLFQKDTRALSSGCVRVNKASELANMLLQD 536 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 537 A-GWNDTRISDALKQGDTRYVNIRHNIPVNLYYLTAFVGADGRTQYRTDIYNYD 589 >gi|217970214|ref|YP_002355448.1| ErfK/YbiS/YcfS/YnhG family protein [Thauera sp. MZ1T] gi|217507541|gb|ACK54552.1| ErfK/YbiS/YcfS/YnhG family protein [Thauera sp. MZ1T] Length = 549 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 106/341 (31%), Positives = 169/341 (49%), Gaps = 4/341 (1%) Query: 86 QDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 Q L+ G WP++ P L G SS V LR RL +G+ +D + AVK Sbjct: 206 QGRLAVGDWPKVAAGPTLKPGASSSRVASLRARLAAAGERVSEARDKSHYDEALVEAVKR 265 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL G++ + TLEA+N R+ Q++ NL R++ + G R +LV+I Sbjct: 266 FQAAHGLQADGVLGAQTLEALNASPAQRVAQIRANLERLRWVASDLQGDR-LLVDIVGYH 324 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 + V +G+ S VIVG+ R+TP L + ++ NP WV+P +I+++D++ ++P Sbjct: 325 ADLVLDGQPVWSSRVIVGKPKRRTPSLLDSVTHLVLNPKWVVPPTILREDVIPGAARNPS 384 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTY 322 YL + + ++D G+ V +DW+ F +R Q G ++ K + Y Sbjct: 385 YLANRRLRVVDRSGQTVDPATIDWSGARQSGFPYRVEQQSGADGSLGRIKFSLSNPYVIY 444 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL 382 +HDT LF R +SGCVRV +L V LL D+ WS ++ + + +T V + Sbjct: 445 LHDTNARSLFKRAERALSSGCVRVEKPEELAVLLLADSGRWSAQALQAALDSGRTRTVDV 504 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 +V V Y +A + + R+DIYG D V + P Sbjct: 505 GRDVKVLLHYATAALDEAGRVLLRNDIYGYDAAIVAALDAP 545 >gi|16759864|ref|NP_455481.1| hypothetical protein STY0997 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142363|ref|NP_805705.1| hypothetical protein t1939 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213424610|ref|ZP_03357393.1| hypothetical protein SentesTyphi_02366 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213650528|ref|ZP_03380581.1| hypothetical protein SentesTy_26793 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|25367958|pir||AI0615 probable exported protein STY0997 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502157|emb|CAD05395.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137993|gb|AAO69554.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 615 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 152/286 (53%), Gaps = 9/286 (3%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 316 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 375 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 376 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 432 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 433 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 492 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 493 LGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 551 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 552 ISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|168233416|ref|ZP_02658474.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468577|ref|ZP_03074561.1| YcbB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194454941|gb|EDX43780.1| YcbB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332469|gb|EDZ19233.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 615 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 152/286 (53%), Gaps = 9/286 (3%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 316 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 375 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 376 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 432 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 433 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 492 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 493 LGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 551 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 552 ISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|168237100|ref|ZP_02662158.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734245|ref|YP_002114048.1| hypothetical protein SeSA_A1110 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194709747|gb|ACF88968.1| YcbB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289807|gb|EDY29168.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 615 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 152/286 (53%), Gaps = 9/286 (3%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 316 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 375 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 376 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 432 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 433 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 492 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 493 LGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 551 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 552 ISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|168822072|ref|ZP_02834072.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205341461|gb|EDZ28225.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085238|emb|CBY95023.1| Uncharacterized protein ycbB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 615 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 152/286 (53%), Gaps = 9/286 (3%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 316 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 375 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 376 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 432 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 433 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 492 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 493 LGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 551 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 552 ISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|213027433|ref|ZP_03341880.1| hypothetical protein Salmonelentericaenterica_35663 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 410 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 152/286 (53%), Gaps = 9/286 (3%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 122 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 181 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 182 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 238 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 239 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 298 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 299 LGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 357 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 358 ISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 403 >gi|145599560|ref|YP_001163636.1| hypothetical protein YPDSF_2288 [Yersinia pestis Pestoides F] gi|145211256|gb|ABP40663.1| hypothetical protein YPDSF_2288 [Yersinia pestis Pestoides F] Length = 618 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 98/280 (35%), Positives = 143/280 (51%), Gaps = 8/280 (2%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ GL G++ T E +NV R L +N+ R++ L ++VNI Sbjct: 326 AVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGHVDN--GIMVNI 383 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P SL ++G L S VIVGR R+TP++ S +N ++ NP W +P S++++D++ R Sbjct: 384 PNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSLVRQDIVPKAR 443 Query: 261 QDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF--RQDPGKINAMASTKIEF 315 D Y + N ++ + V +DW+ P NF + RQ PG N++ K Sbjct: 444 NDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPYRLRQAPGANNSLGRFKFNM 503 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 S + Y+HDTP LF +R +SGCVRV DL LL+D W+ + VK Sbjct: 504 PSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWNDALVSSKVKQG 562 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 TT V + VPV Y++AW +D QFR DIY D + Sbjct: 563 DTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYDKM 602 >gi|89074934|ref|ZP_01161384.1| hypothetical amidase [Photobacterium sp. SKA34] gi|89049331|gb|EAR54894.1| hypothetical amidase [Photobacterium sp. SKA34] Length = 587 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 89/281 (31%), Positives = 151/281 (53%), Gaps = 4/281 (1%) Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 V ++K FQ RHGL G++ ++T++ + +P R+L +N +R+ L + G ++ Sbjct: 288 VFESLKTFQKRHGLANDGIIGAATVQQLVMPYGDIARRLALNKLRVATLNKHTEGRPHIW 347 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VNIP LE + G V S VIVGR +R T + S I ++ NPYW +P +I Q D++ Sbjct: 348 VNIPNYKLEVFDKGNVVFESKVIVGRDNRPTNLFSSAITTMVVNPYWNVPITIKQHDVIP 407 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFV--EEVDWNSPEPPNF--IFRQDPGKINAMASTKI 313 ++ D YLK +N+ +++ + ++W + P F F+Q PG N++ K Sbjct: 408 KVKHDIDYLKQHNMQILNSWRDRTVISPSSINWETVNPKTFPHEFQQGPGPRNSLGRVKF 467 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + ++HDTP LF+ R +SGCVRV DL ++++ + ++++ Sbjct: 468 LMPNDYAIFLHDTPSRGLFSKNKRDLSSGCVRVERAYDLANYVIEYQNRGNIPKFKQMLD 527 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +K V L+ + V FVY++AW D +Q R+DIYG D+ Sbjct: 528 AQKQKTVSLSKRIDVDFVYLTAWVDHDGNVQMREDIYGYDS 568 >gi|213160796|ref|ZP_03346506.1| hypothetical protein Salmoneentericaenterica_12358 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 397 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 152/286 (53%), Gaps = 9/286 (3%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 98 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 157 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 158 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 214 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 215 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 274 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 275 LGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 333 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 334 ISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 379 >gi|262275620|ref|ZP_06053429.1| hypothetical protein VHA_002601 [Grimontia hollisae CIP 101886] gi|262219428|gb|EEY70744.1| hypothetical protein VHA_002601 [Grimontia hollisae CIP 101886] Length = 505 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 95/285 (33%), Positives = 159/285 (55%), Gaps = 10/285 (3%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 ++A + AVK FQ HGL G++ ++T MN+ RI+ L +N+ R++ ++ + Sbjct: 210 YNATLVEAVKRFQENHGLKKDGVIGNNTRRWMNMSPSSRIQILALNMERLRLWPTEREKI 269 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +LVNIP +E + K+ L S V+VGR R+TP+ SR++ ++FNP W +P I+++ Sbjct: 270 --ILVNIPNYEMEFWLDRKLILDSKVVVGRPSRRTPLFESRLDSVVFNPSWNVPVKIMRE 327 Query: 254 DMMALLRQDPQYLKDNNIHMIDE--KGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMA 309 D++ ++QD +YL ++ ++ G + EE+DW + P +F +R Q PG NA+ Sbjct: 328 DILPKVQQDNEYLNKHSYTVLSSWVNGSVISAEEIDWETVSPNSFPYRLQQSPGSFNALG 387 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI-IDLDVWLLKDTPTWSRYHI 368 K + N Y+HDTP LFN R +SGC+RV+ I ++ L K Y Sbjct: 388 RYKFNTPNGNAIYLHDTPAKELFNKSRRAYSSGCIRVQKAEILAEILLNKSGKRLGDY-- 445 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 E + +T V L ++ VH +Y +AW ++ +QFR+D+Y D Sbjct: 446 EYYQRIPETKWVSLRQKISVHTIYQTAWV-EEGKVQFREDVYRYD 489 >gi|332141802|ref|YP_004427540.1| putative periplasmic protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551824|gb|AEA98542.1| putative periplasmic protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 462 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 113/376 (30%), Positives = 177/376 (47%), Gaps = 44/376 (11%) Query: 75 IAQTEKAIAFYQDILSRGGWPEL---------PIR-------PLHLGNSSVSVQRLRERL 118 + Q + A AFY I +GGW L +R P++ + ++ L RL Sbjct: 81 LKQMKSAYAFYSSIAQQGGWKALNEDLLLKNGALRKAAADETPIYSEEQAQAITALISRL 140 Query: 119 ---------IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 + L F+ VE+AVK FQ RHGL G+V TL A+NV Sbjct: 141 GREYPSINTNCTHALTAVNSAPCVFNKDVENAVKDFQRRHGLLVDGVVGRKTLAALNVTA 200 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + +QL +N+ R++ + E+K YVLVNIP L + NGKV V+VG+ TP Sbjct: 201 KKKAQQLALNITRLE-MFEEKDSDAYVLVNIPEFRLRYISNGKVKATKDVVVGKPSWATP 259 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE---- 285 I + + NP W IP SI K++ + +P YL++NNI + K+ FV++ Sbjct: 260 SFSDHIEKFVVNPEWRIPISIATKEIAPKVADNPNYLEENNIVI----RKDSFVDDELVD 315 Query: 286 ---VDWNSPEPPNF--IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 +DW +P F + P + N + K F +R+ Y+HDTP F R + Sbjct: 316 PNTIDWEDMKPYQFDHFLVKLPNEKNPLGKVKYLFPNRHAVYVHDTPYQQWFKETNRAAS 375 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK---LATEVPVHFVYISAWS 397 GC+R+ + L + ++ S ++ V+ R+ + K L +P+H VY +AW+ Sbjct: 376 HGCIRLEDPFSLAQLIAEEQGVDSL--MDNVISARELSQSKTFHLEEPLPIHLVYWTAWA 433 Query: 398 PKDSIIQFRDDIYGLD 413 ++ FR+DIY D Sbjct: 434 DENGKANFRNDIYQRD 449 >gi|222109387|ref|YP_002551651.1| erfk/ybis/ycfs/ynhg family protein [Acidovorax ebreus TPSY] gi|221728831|gb|ACM31651.1| ErfK/YbiS/YcfS/YnhG family protein [Acidovorax ebreus TPSY] Length = 533 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 111/351 (31%), Positives = 165/351 (47%), Gaps = 22/351 (6%) Query: 82 IAFYQDILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDP-------SKGL 130 +A Y+ + + W P LP R L G + L ERL+ GDL P + Sbjct: 158 LAHYRALGAHPAWAQPLPALPGRKLTPGQPWEGLGVLAERLVALGDLPPQPTGEPPAASA 217 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ--LQVNLMRIKKLLE 188 + + A FQ RHGL+ G++ ++TL A+NVP R Q LQ+ +R +L+ Sbjct: 218 PAQYTPVLVEAATAFQRRHGLEADGVLGATTLAALNVPPAARAEQIALQMERLRWTPVLQ 277 Query: 189 QKMGLRYVLVNIPAASLEAVE--NGKVGLRST--VIVGR-VDRQTPILHSRINRIMFNPY 243 G R + VN+P L A E G++ LR + VIVG+ +D +TP+ + I F+PY Sbjct: 278 ---GPRMIAVNVPEYRLRAYEYAGGRITLRLSMAVIVGKALDTRTPLFDEDMQSIEFSPY 334 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W IP SI + + + LR+DP YL + + G + RQ PG Sbjct: 335 WNIPPSIARGETVPRLRRDPGYLARQGMEFVSAAGVSTDTTPEMLGAVVAGQARIRQRPG 394 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 +NA+ K + +N Y+H T P LF R + GCVRV + L ++L+D PTW Sbjct: 395 PLNALGDIKFVLPNNDNIYLHHTSAPTLFGRSRRDLSHGCVRVGEPVALAQFVLQDDPTW 454 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + I + K V+L VPV +I+ +D F D+YG D Sbjct: 455 TVERIRAAMAQPKPVFVRLPHPVPVIITHITVVV-QDGRPHFYGDLYGHDR 504 >gi|332525152|ref|ZP_08401329.1| peptidoglycan-binding domain-containing protein [Rubrivivax benzoatilyticus JA2] gi|332108438|gb|EGJ09662.1| peptidoglycan-binding domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 547 Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 111/356 (31%), Positives = 177/356 (49%), Gaps = 24/356 (6%) Query: 76 AQTEKAIAFYQDILSRGGW----PELP----IRPLHLGNSSVSVQRLRERLIISGDLDPS 127 A+ +A+A Y+ + W P LP R L G + + L RL+ GDL Sbjct: 180 AELRQALARYRTLEHDPAWAAPLPPLPQVGRTRKLEPGAAWPGLPALAARLVALGDLPAG 239 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK--K 185 + + V+ FQ RHG+ G++ ++T + V R QL + L R++ Sbjct: 240 PHAGTVYAEPLVGGVRRFQQRHGVSADGVIGAATFSRLEVKPAARAEQLVLALERLRWTP 299 Query: 186 LLEQKMGLRYVLVNIPAASLEA--VENGKVGL--RSTVIVGR-VDRQTPILHSRINRIMF 240 LLE + R V+VNIP L A V++G++ + R V+VG+ +D++TP++ +++ I F Sbjct: 300 LLESR---RMVVVNIPEFVLRAYEVQDGRITVVQRMRVVVGQALDKRTPLIDAQMRAIEF 356 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEPPNFI 297 +PYW +P SI++ + + LR+DP YL + G EV E +D + + Sbjct: 357 SPYWNVPPSIVRAETLPKLRRDPDYLAREGFEFVAGDGSVHGEVSAEALDALAAG--RWR 414 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 RQ PG NA+ K F + Y+H TP LF R + GCVR+ + + L +++L Sbjct: 415 IRQRPGPRNALGDIKFVFPNAEQIYLHHTPSTALFARDRRDFSHGCVRIEDPLALAMFVL 474 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +D P W I E + ++ ++LAT V V Y +A KD + F DDIY D Sbjct: 475 RDQPDWPEARIREAMDAGESRTLRLATPVRVLIAYGTALV-KDGQVYFFDDIYRQD 529 >gi|270261208|ref|ZP_06189481.1| hypothetical protein SOD_a04330 [Serratia odorifera 4Rx13] gi|270044692|gb|EFA17783.1| hypothetical protein SOD_a04330 [Serratia odorifera 4Rx13] Length = 611 Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 98/299 (32%), Positives = 151/299 (50%), Gaps = 13/299 (4%) Query: 126 PSKGLSVAFDAYVE---SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 P+ ++V +AY VK FQ GL G++ + T E +NV R L +N+ R Sbjct: 301 PAGPVTVTDNAYTPDLVEGVKRFQKWQGLTADGVIGARTREWLNVSPQTRASLLALNIQR 360 Query: 183 IKKLLEQ-KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 ++ L G ++VNIP SL +NG L S VIVGR R+TP+++S +N ++ N Sbjct: 361 LRILPGYVDTG---IMVNIPNYSLTYYQNGNEVLSSRVIVGRPSRKTPLMNSALNNVVVN 417 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF 298 P W +P +++++D++ +D Y + + ++ + V +DWN NF + Sbjct: 418 PPWNVPTTLVREDIVPKAMRDGSYFQKHGYTVLSGWSNDAEVINPAMIDWNMVSARNFPY 477 Query: 299 --RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 RQ PG N++ K S + Y+HDTP LF +R +SGCVRV DL L Sbjct: 478 RIRQAPGATNSLGRFKFNMPSSDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASDLANML 537 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 L+D W+ + +K TT V + +PV Y++AW D QFR DIY D+ Sbjct: 538 LQDA-GWNNTRVSSTLKGGNTTYVNIRQHIPVKLYYLTAWVSDDGKPQFRTDIYNYDDT 595 >gi|116620897|ref|YP_823053.1| peptidoglycan binding domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116224059|gb|ABJ82768.1| Peptidoglycan-binding domain 1 protein [Candidatus Solibacter usitatus Ellin6076] Length = 401 Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 101/321 (31%), Positives = 162/321 (50%), Gaps = 11/321 (3%) Query: 105 GNSSVSVQRLRERLIISGDL--DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G++ L RL + GDL D S ++ + AVK FQ RHGL P G ++++TL Sbjct: 72 GDAYSDAPLLIRRLSLLGDLAADAVPSDSDVYEGELVEAVKRFQSRHGLKPDGRIEATTL 131 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG----LRST 218 +NVP+ R+RQL+++ R ++ VL N+P L A G L Sbjct: 132 GQLNVPLCARVRQLELSAERWRRHPYDPTRPAIVL-NLPEFRLRAYGGTDAGSDPELEMK 190 Query: 219 VIVGRV-DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V+VG+ D ++PIL S++ ++F PYW +P SI + +++ L+R+DP ++ N ++ + Sbjct: 191 VVVGKAPDHKSPILLSQLQAVIFRPYWKVPVSIQRNELLPLIRKDPAWVSANRFELVTPQ 250 Query: 278 GKEVFVEEVDWNSPE---PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 G+ E++ + E RQ PG N++ K F + YMHDT LF Sbjct: 251 GEVAEEEKLSEETLEDISTGKLQLRQKPGPKNSLGLVKFLFPNEYGVYMHDTAAHSLFAR 310 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 R + GC+RV DL W+L++ W R IEE ++ + VK+ + + +Y + Sbjct: 311 ERRDLSHGCIRVEKPEDLAAWVLREQSDWPRERIEEAMQGTEPVSVKVKRPIQIVMMYST 370 Query: 395 AWSPKDSIIQFRDDIYGLDNV 415 A K+ + F DIYG D V Sbjct: 371 ASVMKNGEVHFFRDIYGEDAV 391 >gi|62179522|ref|YP_215939.1| hypothetical protein SC0952 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127155|gb|AAX64858.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713990|gb|EFZ05561.1| N-6 adenine-specific DNA methylase, conserved site [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 615 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 151/286 (52%), Gaps = 9/286 (3%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 316 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 375 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 376 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 432 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 433 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 492 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 493 LGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 551 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + PV+ Y++A+ D +Q+R DIY D Sbjct: 552 ISGALKQGDTRYVNIRQNTPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|94968926|ref|YP_590974.1| hypothetical protein Acid345_1899 [Candidatus Koribacter versatilis Ellin345] gi|94550976|gb|ABF40900.1| conserved hypothetical protein [Candidatus Koribacter versatilis Ellin345] Length = 561 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 104/327 (31%), Positives = 170/327 (51%), Gaps = 11/327 (3%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDP 153 LP+ ++ G + L +RL GDLDP + ++ +D + V FQ RHGL Sbjct: 222 LPVGVVYQGGYYDHMPALAKRLQQLGDLDPKVIILADAIKYDDPLMGGVAHFQSRHGLPN 281 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE-NGK 212 G + S T++A+N+P+ R+ QL++ L R + + Q V+VN+P L + +G Sbjct: 282 DGNLTSDTIDALNIPIADRLEQLKLALERYRWIRYQFTSPP-VVVNVPEFKLFGYDGSGT 340 Query: 213 VGLRSTVIVGRV-DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 L V VG D QTPI I I+F PYW + +I + +M+ + +D YL+ N + Sbjct: 341 QILSMGVNVGDAFDFQTPIFEGDIRYIVFRPYWYVTPTIQRDEMVPSVEEDRTYLEQNEM 400 Query: 272 HMIDEKGKEV---FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++D+ GK + + + + ++ RQ PG NA+ KI F + +N Y+HDTPE Sbjct: 401 EVVDKDGKVIASGAISDAVLKHLKNGSYSIRQRPGADNALGLVKIIFPNSHNVYLHDTPE 460 Query: 329 -PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK-TRKTTPVKLATEV 386 +F+ R + GC+ + DL WLL+D WS ++E ++ R + V L V Sbjct: 461 FKTMFSKAPRALSHGCIHLEKPADLAYWLLRDKTDWSLDKVKEAMQHGRDNSSVTLTKPV 520 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLD 413 P+ +Y++A + + +QF DIYG D Sbjct: 521 PILILYVTARAQTNGTVQFFKDIYGHD 547 >gi|317491480|ref|ZP_07949916.1| ykud domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921027|gb|EFV42350.1| ykud domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 608 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 146/281 (51%), Gaps = 10/281 (3%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL-EQKMGLRYVLVN 199 AVK FQ GL G++ T E +NV R L +N+ R++ L E G ++VN Sbjct: 315 AVKRFQQWQGLASDGVIGKRTREWLNVSPQTRATLLALNIQRLRILPGEVDTG---IMVN 371 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IP SL +NG L S VIVGR R+TP+++S +N ++ NP W +P ++I++D++ Sbjct: 372 IPNYSLIYYQNGTEVLTSRVIVGRPTRKTPLMNSELNNVVVNPPWNVPTTLIREDIVPKA 431 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEE---VDWNSPEPPNFIFR--QDPGKINAMASTKIE 314 +DP Y + + + + V + +DW S P NF +R Q PG N++ K Sbjct: 432 MRDPGYFERHGYRLFSGWSNDAEVVDPYMIDWASVSPRNFPYRIQQAPGVNNSLGRYKFN 491 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 S++ Y+HDTP LF +R +SGCVRV L LL+D W+ + +K Sbjct: 492 MPSQDAIYLHDTPNHGLFEKDIRALSSGCVRVNKASTLANMLLQDA-GWNDARVSSALKE 550 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 T V + +PV Y++AW +D QFR DIY D+ Sbjct: 551 GNTKYVPIRHRIPVRLYYLTAWVSEDGKPQFRTDIYNYDDT 591 >gi|94312745|ref|YP_585954.1| hypothetical protein Rmet_3815 [Cupriavidus metallidurans CH34] gi|93356597|gb|ABF10685.1| conserved hypothetical protein (peptidoglycan-binding domain) [Cupriavidus metallidurans CH34] Length = 540 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 97/344 (28%), Positives = 167/344 (48%), Gaps = 10/344 (2%) Query: 81 AIAFYQDILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 A++ Y+ + ++ W P P L +G + ++ +RL GDL + ++ Sbjct: 174 ALSRYRALATQPLWNTPLPTPPGNKLAIGQPYDGLAQMAQRLEALGDLPQGTPVPKKYEG 233 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 + +AV+ FQ RHGLD G++ TL +N R++Q+ + + R++ G R + Sbjct: 234 ALVTAVESFQKRHGLDADGVIGQGTLAQLNTTPSERVKQIALTMERLR-WTPLTAGPRVI 292 Query: 197 LVNIPAASLEAVE--NGK--VGLRSTVIVGR-VDRQTPILHSRINRIMFNPYWVIPRSII 251 +VNIP L A + +GK + L VIVG+ ++ +TP+ + I F+PYW +P SI Sbjct: 293 VVNIPEFMLRAYDYVDGKLDIKLEMKVIVGKALNTRTPMFREDMRYIEFSPYWNVPPSIA 352 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 + +++ R+DP Y + + + ++ RQ PG +NA+ Sbjct: 353 RSEVVPKSRRDPGYFTRQGFEFVSGGQAITTLSSANLDAVLNGQMRIRQRPGPLNALGDI 412 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F + N Y+H TP P LF R + GC+RV + L ++L+D P W+ I + Sbjct: 413 KFVFPNNQNIYLHHTPTPQLFQRGRRDFSHGCIRVEEPVQLAKFVLQDMPEWTEERIRQA 472 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + K+ + L +PV Y +A + D + F DIYG D + Sbjct: 473 MSKGKSNTIALKQPLPVVLAYGTAIARADGRVYFLPDIYGQDKL 516 >gi|254454682|ref|ZP_05068119.1| hypothetical protein OA238_5313 [Octadecabacter antarcticus 238] gi|198269088|gb|EDY93358.1| hypothetical protein OA238_5313 [Octadecabacter antarcticus 238] Length = 535 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 100/334 (29%), Positives = 173/334 (51%), Gaps = 10/334 (2%) Query: 86 QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + +L++GGW P + L +G S V+V LR+RL+ G ++ S + +DA ++ AV+ Sbjct: 189 ERLLAQGGWGPAVSSGSLAVGASGVAVVALRDRLVAMGYMERSA--TQIYDATIQEAVQR 246 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL G + TL +NVP R++Q+ V + R ++ + + G R+V VN+ S Sbjct: 247 FQQTHGLAEDGEAGAGTLTEINVPAASRLQQIIVAMER-ERWMNRPRGERHVWVNLVDFS 305 Query: 205 LEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 ++N +V ++ ++G +RQTP + ++ NP W +PRSI+ + + L+ + Sbjct: 306 AAIMDNDRVTFQTRSVIGATGSNRQTPEFSDVMEYMVINPSWYVPRSIVVNEYLPALQSN 365 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 + ++I + D G+ + V+++ F + RQ P + NA+ K F ++ N Sbjct: 366 RNAV--SHIEITDSNGRAINRSNVNFSQFNSRTFPYSMRQPPSRGNALGLVKFIFPNQYN 423 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP LF VR + GC+R+ + D LL + + T + T V Sbjct: 424 IYLHDTPAKSLFGREVRAFSHGCIRLNDPFDFAYALLAAQEDDPEGVFQSHLDTGRETRV 483 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 L VPVH VY +A++ + FR D+Y D+ Sbjct: 484 NLDEPVPVHLVYRTAFTHTTGQLNFRRDVYDRDS 517 >gi|224582805|ref|YP_002636603.1| hypothetical protein SPC_0996 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467332|gb|ACN45162.1| hypothetical protein SPC_0996 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 639 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 97/286 (33%), Positives = 151/286 (52%), Gaps = 9/286 (3%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 340 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 399 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 400 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 456 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 457 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 516 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 517 LGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 575 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+ DIY D Sbjct: 576 ISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYHTDIYNYD 621 >gi|157369969|ref|YP_001477958.1| hypothetical protein Spro_1726 [Serratia proteamaculans 568] gi|157321733|gb|ABV40830.1| Peptidoglycan-binding domain 1 protein [Serratia proteamaculans 568] Length = 613 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 143/281 (50%), Gaps = 10/281 (3%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVN 199 VK FQ GL G++ T E +NV +R L +N+ R++ L G ++VN Sbjct: 321 GVKRFQKWQGLSADGVIGVRTREWLNVTPQIRASLLALNIQRLRILPGHVDTG---IMVN 377 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IP SL +NG L S VIVGR R+TP++ S +N ++ NP W +P +++++D++ Sbjct: 378 IPNYSLTYYQNGNEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTTLVREDIVPKA 437 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF--RQDPGKINAMASTKIE 314 +D Y + + ++ + V +DW+ P NF + RQ PG N++ K Sbjct: 438 MRDGSYFQKHGYTVLSGWSNDAEVINPAMIDWSMISPRNFPYRIRQAPGATNSLGRFKFN 497 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 S + Y+HDTP LF +R +SGCVRV DL LL+D W+ + +K Sbjct: 498 MPSSDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWNNTRVSSTLKQ 556 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 TT V + +PV Y++AW D QFR DIY D+ Sbjct: 557 GNTTFVNIRQHIPVKLYYLTAWVSDDGKPQFRTDIYNYDDT 597 >gi|163751738|ref|ZP_02158956.1| hypothetical protein KT99_12214 [Shewanella benthica KT99] gi|161328390|gb|EDP99549.1| hypothetical protein KT99_12214 [Shewanella benthica KT99] Length = 453 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 106/329 (32%), Positives = 166/329 (50%), Gaps = 13/329 (3%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS---KGLSVAFDAYVESAVKLFQMRHG 150 WP + LG SS VQRLR L + GDL+ S + +D V +K FQ RHG Sbjct: 126 WPSVTRVNFKLGQSSQQVQRLRWMLTVLGDLENSELTRYREAIYDPMVIQGIKSFQRRHG 185 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L +G +D+ T++A+N+ R+ Q+Q NL R +L +Y+ +NIP SLE Sbjct: 186 LTANGELDAPTVQALNISPKRRVIQMQQNLWRWI-MLPSSPPPKYIKINIPNYSLELFVL 244 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL--KD 268 G++ L VIVG+ TP+L +R+ R+ NPYW P SII+ +++ L ++P YL K Sbjct: 245 GELDLSMKVIVGKPSSPTPVLLTRVTRMTINPYWTPPTSIIRSELLPLNSREPGYLNHKG 304 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFI--FR--QDPGKINAMASTKIEFYSRNNTYMH 324 +H + +K V V+ ++ + + +R Q PGK NA+ + + + Y+H Sbjct: 305 FELHPVAKKDNPV-VKLINIAPRQLAELLKEYRLVQAPGKDNALGKLRFTIPNTESIYLH 363 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP+ LF + GC+R+ + L ++L + I + T V L+ Sbjct: 364 DTPQKKLFAGNDLALSHGCIRLEKAVALFEYILSTQD--NAEEIRRALGQPNTRYVSLSN 421 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +P+ Y +AW +Q R DIY LD Sbjct: 422 AIPIFITYQTAWVDSRGKLQLRPDIYHLD 450 >gi|90414498|ref|ZP_01222473.1| hypothetical protein P3TCK_00890 [Photobacterium profundum 3TCK] gi|90324406|gb|EAS40968.1| hypothetical protein P3TCK_00890 [Photobacterium profundum 3TCK] Length = 572 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 101/294 (34%), Positives = 150/294 (51%), Gaps = 31/294 (10%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 VK FQ RHGL G++ T + + RIR L +N R++ + + ++VNI Sbjct: 281 GVKTFQKRHGLKVDGVIGPKTRYWLAITPKERIRVLALNAQRVRLWPAEHNSV--LIVNI 338 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P L + K S VIVGR R+TP++ SR+N ++FNPYW +P+SI++KD++ R Sbjct: 339 PGYDLNLWLDNKHVFDSKVIVGRPSRRTPLISSRVNSVVFNPYWNVPKSIMRKDILPKAR 398 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP-------PNFIF--------RQDPGKI 305 +D YL +N +I WNS E P+ ++ RQ PG Sbjct: 399 RDRSYLYRHNYAVIRS-----------WNSSEQIPIHTIHPSMLYAKTFPYRLRQKPGNK 447 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWS 364 NA+ K + ++ Y+HDTP LFN R +SGCVRV N L + LL + T Sbjct: 448 NALGLYKFNIPNDDSIYLHDTPAKSLFNKDDRAFSSGCVRVENADVLALILLNYSGVTEQ 507 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 R++ E+ +KT + L +V VH +Y +AW ++ FRDD+Y D V G Sbjct: 508 RFY--ELSGRKKTKTIGLRNKVQVHLIYQTAWVDDGGLVNFRDDVYLYDKVGDG 559 >gi|119945331|ref|YP_943011.1| cell wall degradation protein [Psychromonas ingrahamii 37] gi|119863935|gb|ABM03412.1| cell wall degradation protein [Psychromonas ingrahamii 37] Length = 513 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 100/321 (31%), Positives = 170/321 (52%), Gaps = 15/321 (4%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL------FQMRHGLDPSGMV 157 +G+S + L RL ISG+L + + + + + KL FQ+RHGL+P G++ Sbjct: 196 IGDSLAQKKVLLSRLEISGELSSQEKQQIELENHQGYSQKLGEIIRSFQIRHGLEPDGII 255 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 +TL +N+ R+R + +N++R + L R V++NIP ++E E + S Sbjct: 256 GKNTLYWLNISRQERVRLMALNILR--QQLWTMDNTRKVIINIPDYTMEYWEEDQKIFES 313 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-- 275 VIVG+ R+TP+ +++N I+FNP W +P I+++D++ + D YL ++ +I+ Sbjct: 314 KVIVGQTKRKTPLFSAQLNAIVFNPRWNVPTIIMREDILPKVLLDINYLSRHSYEIIENY 373 Query: 276 EKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 + K + E ++W NF + RQ G+ NA+ K + N+ Y+HDTP LF Sbjct: 374 QSQKVIDAETINWKLITVHNFPYRLRQKSGENNALGLYKFNTPNNNSIYLHDTPAKNLFE 433 Query: 334 NVVRFETSGCVRVRNIIDLDVWLL-KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 R +SGC+RV+ ++L+ K RY+I V +T+ V L ++ V+ VY Sbjct: 434 KQDRAFSSGCIRVQKAEQFALFLMDKSGYPLERYNIHHNVP--ETSSVSLKKKITVYSVY 491 Query: 393 ISAWSPKDSIIQFRDDIYGLD 413 + W + QFR+DIY D Sbjct: 492 RTVWVDQFGFTQFRNDIYHYD 512 >gi|330445897|ref|ZP_08309549.1| putative peptidoglycan binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490088|dbj|GAA04046.1| putative peptidoglycan binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 586 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 99/347 (28%), Positives = 174/347 (50%), Gaps = 10/347 (2%) Query: 78 TEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 T A+A YQ++ + R G++ L + L GD+D + ++ A Sbjct: 221 TMDAVAKYQNLPAHTLKASDFTRVYRKGDTLPHGHELVKVLYTLGDMDQAHYDHLSHQAK 280 Query: 138 VES------AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 + + ++K FQ RHGL G+V +T++ + +P + R+L +N +R+ L + Sbjct: 281 ITNTGAVFESLKTFQKRHGLSSDGIVGPATVQQLVMPYNEIARRLALNTLRVATLNKHSE 340 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 ++ VNIP LE + G V S VIVGR R T + S I ++ NPYW +P +I Sbjct: 341 DRPHIWVNIPNYKLEVYDKGNVVFESKVIVGRDSRPTNLFSSAITTMVVNPYWNVPITIK 400 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPNFI--FRQDPGKINA 307 Q D++ ++++ YLK +N+ +++ + ++W++ P F F+Q PG N+ Sbjct: 401 QHDVIPKVKRNIGYLKQHNMQILNSWRDRTVINPTSINWSTVNPKTFPHEFQQGPGPHNS 460 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K + ++HDTP LF+ R +SGCVRV DL +++ + Sbjct: 461 LGRVKFLMPNDYAIFLHDTPARGLFSKTKRDLSSGCVRVERAYDLANYVIDYQNRGNIPA 520 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +++ K V L+ + V FVY++AW ++ +Q R+DIYG D+ Sbjct: 521 FTKMLNAEKQKTVSLSKRIDVDFVYLTAWVDQNGKVQMREDIYGYDS 567 >gi|261246211|emb|CBG24015.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 613 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 97/286 (33%), Positives = 151/286 (52%), Gaps = 9/286 (3%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 314 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 373 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 374 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 430 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + D YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 431 RKDILPKVWNDLGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 490 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 491 LGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 549 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 550 ISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 595 >gi|312887255|ref|ZP_07746859.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] gi|311300567|gb|EFQ77632.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] Length = 544 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 95/320 (29%), Positives = 164/320 (51%), Gaps = 18/320 (5%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+++ + +++RL + D L A++A +++A+ FQ R+GL +G+++ T+ Sbjct: 239 GDTAAVIATVKKRLYLLEDFK-GDTLDRAYNADLDTAILQFQSRNGLLANGLLNKETVAE 297 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 MNVP+ RI+Q+ VN+ R + L + Y+ VNIP L + V+VG+ Sbjct: 298 MNVPLKKRIQQILVNMERCR-WLPISLNSDYLAVNIPEFKLHVFHADSLLWSCNVVVGQT 356 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 QT + + + ++F+PYW +P SI+QK+++ +++ YL + H + G + Sbjct: 357 MHQTTVFYGDVKYVVFSPYWNVPPSIVQKEVVPEMKRHRDYL---STHRMQITGYADGLP 413 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 + RQ PG N++ K F + N Y+HDTP LF R + GC+ Sbjct: 414 TI------------RQLPGPENSLGLVKFLFPNSYNIYLHDTPSKSLFGESARAFSHGCI 461 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQ 404 RV+N L +LLKD W I+ + K V L +VPV Y +A++ ++ + Sbjct: 462 RVQNPTKLANFLLKDQKNWDAQKIDVAMHAGKEQYVTLQNKVPVFIAYFTAFTDGNNKLN 521 Query: 405 FRDDIYGLDNVHVGIIPLPE 424 FR DIY LD+ H+ + + E Sbjct: 522 FRKDIYNLDD-HLASMLIAE 540 >gi|56477065|ref|YP_158654.1| hypothetical protein ebA2890 [Aromatoleum aromaticum EbN1] gi|56313108|emb|CAI07753.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 543 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 102/330 (30%), Positives = 167/330 (50%), Gaps = 13/330 (3%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P P R L G + + L +RL+ GDL + + + ++ + VK FQ RHGL Sbjct: 192 PRPPQRKLEPGQAYAGMPVLMQRLVALGDLPAATPVPLRYEGALVEGVKAFQRRHGLAED 251 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIK--KLLEQKMGLRYVLVNIPAASLEAVE--N 210 G+V +TLE ++V R+RQ+++ L R++ LL+ G R ++VN+P L A E + Sbjct: 252 GVVGKATLEQLDVSPVARVRQIELTLERLRWTPLLQ---GPRMIVVNVPEFVLRAYEARD 308 Query: 211 GKVGLRST--VIVGR-VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 G+V +++ VIVG +D +TP+ + I F+PYW +P SI + + + LR+D YL+ Sbjct: 309 GRVEVKTAMKVIVGSALDTRTPLFDEDMRFIEFSPYWNVPPSIARAETIPKLRRDAAYLR 368 Query: 268 DNNIHMIDEKGKEV--FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHD 325 + G+ + F E ++ RQ PG NA+ K F + +N ++H Sbjct: 369 QQGFEFVTGNGQVIPTFAPEY-LDAVLRGEMRIRQRPGPSNALGDIKFIFPNNDNIFLHH 427 Query: 326 TPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATE 385 T P LF R + GC+RV + L ++L+D P WS I + + ++L Sbjct: 428 TSTPRLFGKDRRDFSHGCIRVEEPVVLAKFVLQDDPEWSEERIRAAMAGGVSKTLRLREP 487 Query: 386 VPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 +PV Y + D ++ F DIYG D + Sbjct: 488 LPVVIAYSTVLVKSDGMVYFFRDIYGHDTL 517 >gi|149911416|ref|ZP_01900034.1| peptidoglycan binding domain protein [Moritella sp. PE36] gi|149805524|gb|EDM65529.1| peptidoglycan binding domain protein [Moritella sp. PE36] Length = 512 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 110/363 (30%), Positives = 171/363 (47%), Gaps = 33/363 (9%) Query: 63 IDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL--PIRPLHLGNSSVSVQRLRERLII 120 IDS +P + + + +AI Y+ I WP+L P LG V+ LR++LI Sbjct: 148 IDSAMPQFN--AVIRLRQAINKYKGI-KNIAWPKLTDSFNP-QLGQGHAEVKILRKKLIT 203 Query: 121 SGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 DL SK FD + + +K FQ R+GL P+G ++++T A+N +D RI +LQ Sbjct: 204 FNDLRTVSTSKHRLHIFDQSIINGLKHFQRRNGLKPTGRLNATTKNALNQNIDSRINKLQ 263 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 +NL R L + +Y++VNIPA L ++ G+ + VIVG+ QTPI+ + +N Sbjct: 264 INLWRWLSL-PRIPPTKYIMVNIPAFDLRLIDKGEALMEMKVIVGKPSNQTPIMITEVNS 322 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN-- 295 + NP W R+II D++ L ++ L N ++ G EV PPN Sbjct: 323 VTLNPTWTPTRNIINNDLLPLHNKNHTALNSLNFYLAKGYGANTLYREV------PPNLQ 376 Query: 296 -----FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + Q PG NA+ + + + N ++HDTP LF R + GC+R+ Sbjct: 377 EMLKQYRLVQRPGSNNALGNVRFNIKNNNAIFLHDTPTKYLFKRQNRAFSHGCIRLEKSD 436 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 DL L I + T ++L +PV Y +AW I +R+D+Y Sbjct: 437 DLLTIL----------RINQRKNNSGTKHLRLQQSLPVFITYQTAWIDNLGEINWRNDLY 486 Query: 411 GLD 413 D Sbjct: 487 NKD 489 >gi|197284624|ref|YP_002150496.1| hypothetical protein PMI0730 [Proteus mirabilis HI4320] gi|194682111|emb|CAR41705.1| conserved hypothetical protein [Proteus mirabilis HI4320] Length = 571 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 92/285 (32%), Positives = 145/285 (50%), Gaps = 8/285 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +DA + +AVK FQ HGL+ G++ T +N+ R + +N+ R++ L +G Sbjct: 273 YDAPLIAAVKSFQAAHGLETDGIIGRQTRNWLNMTPIQRAGIMALNIQRLR--LTPPIGD 330 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 + VNIP SL N ++ L S VIVGR DR+TPI+ S +N ++ NP W +P S+ +K Sbjct: 331 TGIWVNIPDYSLYFYANNQLILDSKVIVGRPDRKTPIMSSALNNVVVNPPWNVPTSMTRK 390 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVF---VEEVDWNSPEPPNFIFR--QDPGKINAM 308 D++ + DP Y + G + + ++DW + NF +R Q PG N++ Sbjct: 391 DIVPKGKADPSYFSRKGYTIYSGWGNDAYPINPYDIDWENISAANFPYRIWQAPGPTNSL 450 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K + Y+HDTP LF +R +SGC+RV L LL D W + I Sbjct: 451 GRYKFNMPNSEAIYLHDTPNHNLFTKNMRAISSGCIRVNKAAQLATILLGDA-GWKQDRI 509 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + +K T + +PV+ Y +AW +++ Q+R DIY D Sbjct: 510 DAALKRGSTQYAPIPERIPVYLYYQTAWVAEENAPQYRADIYNYD 554 >gi|254291719|ref|ZP_04962506.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|150422403|gb|EDN14363.1| conserved hypothetical protein [Vibrio cholerae AM-19226] Length = 524 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 156/290 (53%), Gaps = 15/290 (5%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +DA +E +K FQ HGL P G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 234 YDASLEKPIKQFQKMHGLQPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSM 293 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ + Sbjct: 294 --IVVNVPGFDMKYWDAGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVE 351 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL ++++ +I ++ +DW + EP F + RQ G NA+ Sbjct: 352 DILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALG 411 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRYHI 368 + K + Y+HDTP LFNN R +SGC+RV N LL + T + + Sbjct: 412 TYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPV 471 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 T + L +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 472 -------STQAIALKKRIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|153827569|ref|ZP_01980236.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|149738468|gb|EDM52864.1| conserved hypothetical protein [Vibrio cholerae MZO-2] Length = 524 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 156/290 (53%), Gaps = 15/290 (5%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +DA +E +K FQ HGL P G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 234 YDASLEKLIKQFQKMHGLQPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSM 293 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ + Sbjct: 294 --IVVNVPGFDMKYWDAGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVE 351 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL ++++ +I ++ +DW + EP F + RQ G NA+ Sbjct: 352 DILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWETVEPETFPYRLRQQAGVQNALG 411 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRYHI 368 + K + Y+HDTP LFNN R +SGC+RV N LL + T + + Sbjct: 412 TYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPV 471 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 T + L +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 472 -------STQAIALKKRIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|153212308|ref|ZP_01948096.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124116686|gb|EAY35506.1| conserved hypothetical protein [Vibrio cholerae 1587] Length = 524 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 156/290 (53%), Gaps = 15/290 (5%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +DA +E +K FQ HGL P G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 234 YDASLEKPIKQFQKMHGLQPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSM 293 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ + Sbjct: 294 --IVVNVPGFDMKYWDAGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVE 351 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL ++++ +I ++ +DW + EP F + RQ G NA+ Sbjct: 352 DILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALG 411 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRYHI 368 + K + Y+HDTP LFNN R +SGC+RV N LL + T + + Sbjct: 412 TYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPV 471 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 T + L +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 472 -------STQAIALKKRIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|323492996|ref|ZP_08098133.1| hypothetical protein VIBR0546_16236 [Vibrio brasiliensis LMG 20546] gi|323312775|gb|EGA65902.1| hypothetical protein VIBR0546_16236 [Vibrio brasiliensis LMG 20546] Length = 448 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 94/297 (31%), Positives = 168/297 (56%), Gaps = 16/297 (5%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 LD K +S +D +E+AVK FQ HGL+ G++ T++ +N+P++ R+ L +N R Sbjct: 154 LDVRKDVS-WYDRTLETAVKQFQRLHGLEADGIIGPETIKWINLPIEKRLAILAINAERN 212 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + Q+ + ++VN+P+ ++ +G+ +S V+VG+ R TP++ ++++ ++ NP Sbjct: 213 RYWPVQRDTI--IVVNVPSFQMKYWNSGQEVFQSKVVVGKKARPTPVMMTKLDSLILNPT 270 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV--EEVDWNSPEPPNFIFR-- 299 W +P I+ +D++ ++QD +YL NI +I + G + + +E+DW++ P F +R Sbjct: 271 WNVPWKIMVEDIIPKVKQDREYLARQNIMIIPKWGSQEVINPDEIDWDNLNPHQFPYRMT 330 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q G+ NA+ K +R Y+HDTP LF+ R +SGC+RV N DV D Sbjct: 331 QLSGQANALGLYKFNTPNRRAIYLHDTPSKGLFDETQRAFSSGCIRVENA---DV--FAD 385 Query: 360 TPTWSRYHI---EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 T ++ + EE V + L + +PVH +Y +AW ++ + +R+DIY LD Sbjct: 386 TLLQTQGLVIEQEEQVSPTPNQAIPLKSRIPVHIIYQTAWY-EEGNVHYREDIYRLD 441 >gi|59711764|ref|YP_204540.1| carboxypeptidase [Vibrio fischeri ES114] gi|59479865|gb|AAW85652.1| predicted carboxypeptidase [Vibrio fischeri ES114] Length = 515 Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 101/322 (31%), Positives = 171/322 (53%), Gaps = 25/322 (7%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAV---KLFQMRHGLD 152 IRP L + + + RL+ +SG+++ + L + D Y S V K FQ RHGL Sbjct: 188 IRPNQLTDVNAIIYRLQ----VSGEINHQEADMLLRQSNDHYDSSLVLIIKEFQKRHGLK 243 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G++ TL +N+ R+R + +N+ R++ L E K +VLVNIP+ + + G+ Sbjct: 244 QDGIIGPKTLHWLNMTAKERVRIMALNIQRLR-LWENKNS-NFVLVNIPSYEMAYWQEGE 301 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 + S VIVG+ +R+TPI +R+N I+FNP W +P I+++D++ + +L+ N Sbjct: 302 LVFTSKVIVGKPERRTPIFTTRLNAIVFNPEWKVPTKIMREDILPKALNNKDFLQSQNFE 361 Query: 273 MIDEK-GKEVF-VEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 +I KEV ++++DW F + +Q G NA+ K +RN Y+HDTP Sbjct: 362 IIPTWLSKEVISIDDIDWEQVNVETFPYKLKQKSGNTNALGRYKFNTPNRNAIYLHDTPS 421 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKD----TPTWSRYHIEEVVKTRKTTPVKLAT 384 LF+ R +SGC+RV + L+K+ T + YH + +T+ V L Sbjct: 422 RSLFSKQHRAYSSGCIRVEKASEFAQLLMKESHFSTQDYKDYH-----ELPETSKVSLDQ 476 Query: 385 EVPVHFVYISAWSPKDSIIQFR 406 ++ V+ +Y ++W +D+ +QFR Sbjct: 477 QISVYTIYQTSWVGEDNQVQFR 498 >gi|54309518|ref|YP_130538.1| hypothetical protein PBPRA2351 [Photobacterium profundum SS9] gi|46913954|emb|CAG20736.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 572 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 101/294 (34%), Positives = 150/294 (51%), Gaps = 31/294 (10%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 VK FQ RHGL G++ T + + RIR L +N R++ + + ++VNI Sbjct: 281 GVKTFQKRHGLKVDGVIGPKTRYWLAITPKERIRVLALNAQRVRLWPAEYNSV--LIVNI 338 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P L + K S VIVGR R+TP++ SR+N ++FNPYW +P+SI++KD++ R Sbjct: 339 PGYELNLWLDNKHVFDSKVIVGRPSRRTPLISSRVNSVVFNPYWNVPKSIMRKDILPKAR 398 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP-------PNFIF--------RQDPGKI 305 +D YL +N +I WNS E P+ ++ RQ PG Sbjct: 399 RDRSYLYRHNYAVIRS-----------WNSSEQIPIHTIHPSMLYAKTFPYRLRQKPGNK 447 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWS 364 NA+ K + N+ Y+HDTP LFN R +SGCVRV N L + LL + T Sbjct: 448 NALGLYKFIIPNDNSIYLHDTPAKSLFNKDDRAFSSGCVRVENADVLALILLNYSGVTDQ 507 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 R++ E+ ++T + L +V VH +Y +AW ++ FRDD+Y D V G Sbjct: 508 RFY--ELSGRKQTKTIGLRNKVKVHLIYQTAWVDDGGLVNFRDDVYLYDKVGGG 559 >gi|90579549|ref|ZP_01235358.1| hypothetical protein VAS14_01266 [Vibrio angustum S14] gi|90439123|gb|EAS64305.1| hypothetical protein VAS14_01266 [Vibrio angustum S14] Length = 579 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 94/280 (33%), Positives = 154/280 (55%), Gaps = 11/280 (3%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKMGLRYVLVN 199 A+K FQ RHGL G++ T + + + + RIR L +N R++ ++ G ++VN Sbjct: 289 AIKRFQERHGLKSDGVIGPQTQQWLALNIKERIRLLALNAQRMRLWSVKPDTG---IVVN 345 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IP+ + G+ L S VIVGR RQTP+++S I ++FNPYW +P SI++KD+M + Sbjct: 346 IPSYYMNLWLEGEKVLGSKVIVGRPSRQTPMIYSDIQSVVFNPYWNVPNSIMKKDIMPKV 405 Query: 260 RQDPQYLKDNNIHMID--EKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEF 315 R++ YL ++N +I + G+++ + + ++ P F + RQ PGK NA+ K F Sbjct: 406 RRNRNYLANHNYEVIKGWDNGQKIAINSIPYHLLSPNRFPYRLRQKPGKRNALGLYKFNF 465 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 + Y+HDT LF R +SGC+RV L LL+ + + S + + ++R Sbjct: 466 PNNQAIYLHDTASRSLFKKHERALSSGCIRVEQAKSLAKVLLEYSGS-SVQRFDNLSRSR 524 Query: 376 KTTPVKL--ATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 KT + L + VPV +Y +AW ++ +R DIY D Sbjct: 525 KTRTIVLGDSKSVPVDLIYQTAWVDDLGLVHYRSDIYEYD 564 >gi|153801328|ref|ZP_01955914.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|229529651|ref|ZP_04419041.1| hypothetical protein VCG_002746 [Vibrio cholerae 12129(1)] gi|124123153|gb|EAY41896.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|229333425|gb|EEN98911.1| hypothetical protein VCG_002746 [Vibrio cholerae 12129(1)] Length = 524 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 156/290 (53%), Gaps = 15/290 (5%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +DA +E +K FQ HGL P G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 234 YDASLEKLIKQFQKMHGLQPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSM 293 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ + Sbjct: 294 --IVVNVPGFDMKYWDAGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVE 351 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL ++++ +I ++ +DW + EP F + RQ G NA+ Sbjct: 352 DILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALG 411 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRYHI 368 + K + Y+HDTP LFNN R +SGC+RV N LL + T + + Sbjct: 412 TYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPV 471 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 T + L +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 472 -------STQAIALKKRIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|294140768|ref|YP_003556746.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella violacea DSS12] gi|293327237|dbj|BAJ01968.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella violacea DSS12] Length = 482 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 111/379 (29%), Positives = 177/379 (46%), Gaps = 27/379 (7%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLG 105 +I ND F+A + + S + +++ + I Y+ L WP + LG Sbjct: 117 AINNDELAEFIASI---------LPSYDEVSKIRRMIRVYKSQLDVN-WPTITQVNFKLG 166 Query: 106 NSSVSVQRLRERLIISGDLDPS---KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 SS VQRLR L GDL+ S + +D V +K FQ RHG+ SG +D ST Sbjct: 167 QSSKQVQRLRWMLTALGDLENSELTRYRESIYDPMVIHGIKAFQRRHGIRVSGELDESTA 226 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 +N+ R+ Q+Q NL R ++ +Y+ +NIP SL+ G++ L VIVG Sbjct: 227 LVLNISPQRRVIQMQQNLWRWL-MMPPSPPKKYIKINIPDYSLQLFVLGELDLSMKVIVG 285 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + TP++ +R+ R+ NPYW P SII+ +++ L +P YL + E+ Sbjct: 286 KPSSPTPVMMTRVTRMTINPYWTPPSSIIRSELLPLNSTEPGYLNHKGFELHAVGKNEIS 345 Query: 283 VEEVDWNSPEP-----PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 V ++ P+ + Q PGK NA+ + + + Y+HDTP LF+ Sbjct: 346 VVKLTNMEPKQLKGLLTEYRLVQAPGKDNALGQVRFTIPNTQSIYLHDTPAKNLFDGEHL 405 Query: 338 FETSGCVRVRNIIDLDVWLL---KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 + GC+R+ + L +L+ +D+ I+ + KT V L +P+ Y + Sbjct: 406 ALSHGCIRLEKALALSEYLISIHEDSK-----EIQVALSGSKTRYVSLPDPMPIFITYQT 460 Query: 395 AWSPKDSIIQFRDDIYGLD 413 AW +Q R DIY LD Sbjct: 461 AWVDNRGKLQLRPDIYHLD 479 >gi|167645745|ref|YP_001683408.1| peptidoglycan-binding domain-containing protein [Caulobacter sp. K31] gi|167348175|gb|ABZ70910.1| Peptidoglycan-binding domain 1 protein [Caulobacter sp. K31] Length = 500 Score = 152 bits (385), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 106/341 (31%), Positives = 157/341 (46%), Gaps = 19/341 (5%) Query: 79 EKAIAFYQDILSRGGW-PELPIRPLHLGNSS-VSVQRLRERLIISGDLDPSKGLSVAFDA 136 K + Y+DI +RGGW P PL LG + + L+ RL D + FD Sbjct: 166 RKGLTTYRDIAARGGWKPLAGGAPLKLGATGDPRIAALKVRLAAE-DATVVVDKAQVFDE 224 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 ++ A+ Q R GL+P G + +TL A+NVPV+ RI Q+ N+ R + L +++ + Sbjct: 225 VLQQALMRAQKRFGLNPDGGLGPATLAALNVPVERRIDQILANMERWR-WLPRELPADRI 283 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 VNI AA + + L + GR +TP+L S I+ I+ NP W +P SI K++ Sbjct: 284 QVNIAAAVMSVFHDDAPNLTMRAVTGRPGDETPMLQSTIHSIVLNPPWNVPSSIATKELW 343 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 R P YL N+ +I ++ Q G A+ K +F Sbjct: 344 PKERAHPGYLARNDFIVIPTGEGTSRLQ---------------QKAGPKAALGLVKFDFD 388 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 + Y+HDTP F + R + GCVR+ I L LL +P W +E + K Sbjct: 389 NPYGVYLHDTPSRSKFESYSRLASHGCVRLEKPIPLAKQLLASSPDWQPDVVEATIAAGK 448 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 T LA + V +Y +A+ D + FRDD YG D V V Sbjct: 449 TVRAPLAQPIAVFLLYWTAYMTPDGQMNFRDDPYGWDKVLV 489 >gi|238898896|ref|YP_002924578.1| hypothetical protein HDEF_1835 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466656|gb|ACQ68430.1| conserved hypothetical protein, YkuD and peptidoglycan binding domains [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 530 Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 109/330 (33%), Positives = 171/330 (51%), Gaps = 15/330 (4%) Query: 94 WPELPIRP-LHLGNSS---VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 WP+L R L G SS +V+++ RL I G++ + S + + A+K FQ Sbjct: 202 WPKLTERVYLREGYSSKDISNVKKILYRLGI-GNMSLTDVDSQVYSHDLVMAIKQFQKNR 260 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK-KLLEQKMGLRYVLVNIPAASLEAV 208 GL G++ T +NV + R L +N+ R++ + + G +LVNIP SL Sbjct: 261 GLPADGIIGIRTRNWLNVSPKILARLLALNMQRLRFTPADIQTG---ILVNIPDYSLNYY 317 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 E GK+ L S VIVGR DR+TP++ S IN+I+ NP W +P S+ ++D++ + ++ YL++ Sbjct: 318 EEGKIRLFSKVIVGRPDRKTPVMQSAINQIVINPDWNVPHSLAREDILPQVIKNIDYLQE 377 Query: 269 NNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYM 323 +N ++ + V E +DW + NF + RQ G N + K +R + ++ Sbjct: 378 HNYRILSSWSQNAEVIDPESIDWENISIENFPYYLRQTLGPNNPLGHYKFNMPNRYSIFL 437 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 HDTP +F R +SGCVRV+ +L LLK T + I +K K+T Sbjct: 438 HDTPNKAMFQRYRRAGSSGCVRVQKASELARLLLKKTGL-TDADILNFLKENKSTYRNTR 496 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +PV Y++AW +D QFR DIY D Sbjct: 497 KRIPVWLYYLTAWVSEDGATQFRTDIYHYD 526 >gi|94501826|ref|ZP_01308338.1| hypothetical protein RED65_14387 [Oceanobacter sp. RED65] gi|94426047|gb|EAT11043.1| hypothetical protein RED65_14387 [Oceanobacter sp. RED65] Length = 628 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 111/379 (29%), Positives = 178/379 (46%), Gaps = 41/379 (10%) Query: 85 YQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGD-----------------LDP 126 YQDI G W L I PL G+ + RL+ L GD LDP Sbjct: 255 YQDIAESGLWYPLEIENPLKAGDHHAQIPRLKWMLNAYGDYQKSAMDWLVSQTPNSELDP 314 Query: 127 ----------SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 + D A+K +Q R+GL P+G +D TL +N P +++ Sbjct: 315 LALERQYRKQPEHQVYRIDENTVRALKHYQKRNGLLPTGRLDQQTLAQLNEPPYFIAQRI 374 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 +N+ R + L +++G Y+LVN+ L GK L VI+G+ +TP+L I+ Sbjct: 375 ALNMKRWR-YLPKELGEDYILVNMADFRLNYFAKGKRQLNMKVIIGKEHLRTPVLAETIS 433 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEP 293 ++ P W +P I +D++ ++DP YL+ +N + + KEV +E +D+N + Sbjct: 434 SVILAPEWNVPHRIAIRDIIPQAKRDPDYLRKHNFKVYEGWSMPPKEVPLENLDFNGFQS 493 Query: 294 PNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 +R Q PG N++ + K F + + Y+HDT LF +R +SGC+RV + Sbjct: 494 RTNTYRLVQAPGDDNSLGNVKFVFPNDKSIYLHDTNHKELFARDMRALSSGCIRVEQPMA 553 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LL W I V++ R T PV+L VPV+ +Y + W ++ +Q R D+Y Sbjct: 554 LAKALL-GRQNWDEQLISNVIERRYTRPVRLKDPVPVYLMYWTTWVNEEGTLQVRRDVYN 612 Query: 412 LDNVHVGIIPLPEDHPIDS 430 D ++ + H +DS Sbjct: 613 RDQIN------NQSHKLDS 625 >gi|320109078|ref|YP_004184668.1| ErfK/YbiS/YcfS/YnhG family protein [Terriglobus saanensis SP1PR4] gi|319927599|gb|ADV84674.1| ErfK/YbiS/YcfS/YnhG family protein [Terriglobus saanensis SP1PR4] Length = 569 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 100/347 (28%), Positives = 168/347 (48%), Gaps = 17/347 (4%) Query: 78 TEKAIAFYQDILSRGGWPELPI---RPLHLGNSSVSVQRLRERLIISGDLD--PSKGLSV 132 T+ AI Y +L + +P+ + + G Q L RL + GDLD P + Sbjct: 203 TKAAIVHYVGLLPQDHTSPVPMVTGKSIEPGKPWAGSQALSGRLALFGDLDNVPDTVSAS 262 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + A+K FQ RHG++ G + T+ A+N P+ +RI QL L R + L ++ Sbjct: 263 TYDPQLTDALKKFQHRHGIEEDGKIGKDTVNALNTPLGVRINQLTDTLERWRWLSDEYQN 322 Query: 193 LRYVLVNIPAASLEAVENG---KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VN+P +L A +G + +R V + +TP++ + ++F P+W +P S Sbjct: 323 AA-IMVNLPEYTLRAFSDGHHEEFSMRVVVGQSVKEHRTPVITDHMKYLVFRPFWNVPPS 381 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV--EEVDWNSPEPPNFIFRQDPGKINA 307 I++ ++ +R YL +N +D KG V E+V I R+ PG N+ Sbjct: 382 IMKAEIAPHMRASSGYLASHNFETVDNKGNPVSASAEQV-----ARAGVIVREKPGPKNS 436 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K F + N Y+H TP LF+ R + GCVR++ L W+L+D W+ Sbjct: 437 LGLVKFLFPNTFNVYLHSTPATELFSRSKRDFSHGCVRLQEPEKLAAWVLRDNSKWNDDS 496 Query: 368 IEEVVKT-RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I E ++ + V L+ +P+ Y +A+ +D + F DIYG D Sbjct: 497 IHEAMENGQDNKTVLLSHPIPIVIFYATAYPGEDGDMHFFTDIYGYD 543 >gi|304415070|ref|ZP_07395810.1| peptidoglycan binding domain-containing hypothetical protein [Candidatus Regiella insecticola LSR1] gi|304283074|gb|EFL91497.1| peptidoglycan binding domain-containing hypothetical protein [Candidatus Regiella insecticola LSR1] Length = 421 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 92/296 (31%), Positives = 149/296 (50%), Gaps = 10/296 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P + ++ + +AVK FQ GL P G++ + T + +N+ R L +N+ R++ Sbjct: 121 PPPSVDTLYNPALVAAVKRFQQAQGLTPDGIIGTGTRKWLNLSPQKRATLLALNMQRLRI 180 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L + K G ++VNI SL + G L S VIVGR R+TP + S ++ ++ NP W Sbjct: 181 LPADMKTG---IMVNIADYSLHYYQEGNEILSSAVIVGRPSRKTPFMSSALSNVVINPQW 237 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMI---DEKGKEVFVEEVDWNSPEPPNFIF--R 299 +P S+++ D++ ++ D YLK + ++ + K + ++W+ NF + R Sbjct: 238 KVPTSMVKNDILPKVKYDATYLKQHGYTILTNWNNNAKIIDPSTINWHLISANNFPYRLR 297 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG N++ K S ++ Y+HDTP LF +SGCVRV L LLKD Sbjct: 298 QAPGTNNSLGRYKFNMPSSDSIYLHDTPNHRLFQKETLALSSGCVRVHKAAILAKMLLKD 357 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 W + +K TT V + +PV Y+++W K+ +QFR DIY D Sbjct: 358 A-GWDDTRLSNTLKQGNTTYVNIRQHLPVLLYYLTSWVDKEGKVQFRTDIYNYDTA 412 >gi|297578860|ref|ZP_06940788.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297536454|gb|EFH75287.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 524 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 155/290 (53%), Gaps = 15/290 (5%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +DA +E +K FQ HGL P G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 234 YDASLEKPIKQFQKMHGLQPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSM 293 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ + Sbjct: 294 --IVVNVPGFDMKYWDAGREVFEAKVMVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVE 351 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL ++ + +I ++ +DW + EP F + RQ G NA+ Sbjct: 352 DILPMVKRDSEYLANHRMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALG 411 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRYHI 368 + K + Y+HDTP LFNN R +SGC+RV N LL + T + + Sbjct: 412 TYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPV 471 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 T + L +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 472 -------STQAIALKKRIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|262169418|ref|ZP_06037110.1| L,D-transpeptidase YcbB [Vibrio cholerae RC27] gi|262022231|gb|EEY40940.1| L,D-transpeptidase YcbB [Vibrio cholerae RC27] Length = 523 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 156/290 (53%), Gaps = 15/290 (5%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +DA +E +K FQ HGL P G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 233 YDASLEKPIKQFQKMHGLQPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSM 292 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ + Sbjct: 293 --IVVNVPGFDMKYWDAGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVE 350 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL ++++ +I ++ +DW + +P F + RQ G NA+ Sbjct: 351 DILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWETVDPATFPYRLRQQAGVQNALG 410 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRYHI 368 + K + Y+HDTP LFNN R +SGC+RV N LL + T + + Sbjct: 411 TYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPV 470 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 T + L +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 471 -------STQAIALKKRIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 512 >gi|121729970|ref|ZP_01682389.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147674156|ref|YP_001216833.1| hypothetical protein VC0395_A0887 [Vibrio cholerae O395] gi|121628291|gb|EAX60802.1| conserved hypothetical protein [Vibrio cholerae V52] gi|146316039|gb|ABQ20578.1| conserved hypothetical protein [Vibrio cholerae O395] gi|227013185|gb|ACP09395.1| conserved hypothetical protein [Vibrio cholerae O395] Length = 524 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 156/290 (53%), Gaps = 15/290 (5%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +DA +E +K FQ HGL P G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 234 YDASLEKPIKQFQKMHGLQPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSM 293 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ + Sbjct: 294 --IVVNVPGFDMKYWDAGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVE 351 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL ++++ +I ++ +DW + +P F + RQ G NA+ Sbjct: 352 DILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWETVDPATFPYRLRQQAGVQNALG 411 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRYHI 368 + K + Y+HDTP LFNN R +SGC+RV N LL + T + + Sbjct: 412 TYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPV 471 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 T + L +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 472 -------STQAIALKKRIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|256425547|ref|YP_003126200.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] gi|256040455|gb|ACU63999.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] Length = 553 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 96/317 (30%), Positives = 159/317 (50%), Gaps = 5/317 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL +++ Q L RL+ SG LD S G S + + ++ ++ FQ + G Sbjct: 233 PLTYTDTAGYRQLLINRLVQSGHLDTSGGHS-SDTSLLKKGIRAFQKEFNMYEDGQAGKK 291 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T++ MN Q+ +N+ R +KL + + RY++VN+P +E V++G V + S VI Sbjct: 292 TIQTMNKTFADWEVQVALNMDRWRKLPD-TLPQRYIMVNVPGYRMELVDSGTVAVTSKVI 350 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VG +TP+L+SR+ + PYW +P SI K+M+ +++D YL N+ +ID G Sbjct: 351 VGAPRTRTPLLNSRMTNFVMYPYWRVPFSITIKEMLPAIQRDRAYLAKKNLEIIDSHGNA 410 Query: 281 VFVEEVDWNSPEPPNF--IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 + + V W+ F + RQ G N++ K F ++ Y+HDT LF N R Sbjct: 411 ISPDSVKWSKLSKNYFPYVLRQMDGIENSLGIMKFNFMNKYAVYLHDTNARGLFANSYRA 470 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 + GCVRV+ L ++L KD R + + + + VP++F Y +A Sbjct: 471 LSHGCVRVQQWDSLSMYLTKDDTRHPRDSMRRWLANGDKKQIDIQHSVPIYFRYFTA-EG 529 Query: 399 KDSIIQFRDDIYGLDNV 415 +D + +DIYG D + Sbjct: 530 RDGRLVLHEDIYGEDRI 546 >gi|227356807|ref|ZP_03841192.1| peptidoglycan binding domain protein [Proteus mirabilis ATCC 29906] gi|227163097|gb|EEI48032.1| peptidoglycan binding domain protein [Proteus mirabilis ATCC 29906] Length = 571 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/285 (31%), Positives = 144/285 (50%), Gaps = 8/285 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + +AVK FQ HGL+ G++ T +N+ R + +N+ R++ L +G Sbjct: 273 YDEPLIAAVKSFQAAHGLETDGIIGRQTRNWLNMTPIQRAGIMALNIQRLR--LTPPIGD 330 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 + VNIP SL N ++ L S VIVGR DR+TPI+ S +N ++ NP W +P S+ +K Sbjct: 331 TGIWVNIPDYSLYFYANNQLILDSKVIVGRPDRKTPIMSSALNNVVVNPPWNVPTSMTRK 390 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVF---VEEVDWNSPEPPNFIFR--QDPGKINAM 308 D++ + DP Y + G + + ++DW + NF +R Q PG N++ Sbjct: 391 DIVPKGKADPSYFSRKGYTIYSGWGNDAYPINPYDIDWENISAANFPYRIWQAPGPTNSL 450 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K + Y+HDTP LF +R +SGC+RV L LL D W + I Sbjct: 451 GRYKFNMPNSEAIYLHDTPNHNLFTKNMRAISSGCIRVNKAAQLATILLGDA-GWKQDRI 509 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + +K T + +PV+ Y +AW +++ Q+R DIY D Sbjct: 510 DAALKRGSTQYAPIPERIPVYLYYQTAWVAEENAPQYRADIYNYD 554 >gi|229521381|ref|ZP_04410800.1| hypothetical protein VIF_001911 [Vibrio cholerae TM 11079-80] gi|229341479|gb|EEO06482.1| hypothetical protein VIF_001911 [Vibrio cholerae TM 11079-80] Length = 524 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 155/290 (53%), Gaps = 15/290 (5%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +DA +E +K FQ HGL P G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 234 YDASLEKPIKQFQKMHGLQPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSM 293 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ + Sbjct: 294 --IVVNVPGFDMKYWDAGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVE 351 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL ++ + +I ++ +DW + +P F + RQ G NA+ Sbjct: 352 DILPMVKRDSEYLANHRMEIIRGWSDPEVIDPALIDWETVDPETFPYRLRQQAGVQNALG 411 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRYHI 368 + K + Y+HDTP LFNN R +SGC+RV N LL + T + + Sbjct: 412 TYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPV 471 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 T + L +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 472 -------STQAIALKKRIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|330722118|gb|EGH00028.1| L2CD-transpeptidase YcbB [gamma proteobacterium IMCC2047] Length = 439 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 118/426 (27%), Positives = 203/426 (47%), Gaps = 28/426 (6%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 K Y FV L+L LV KP+ V+ EI +E S V + L D+ P Sbjct: 2 KCRYAVFVALLL-----LVFKPVW--VMAEITDELLLSRVTA--PDLLPFQDIQPQLLQP 52 Query: 69 --IISKETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLD 125 SK++ A+ Y++I + G W PL G+ V +L+ L GDL Sbjct: 53 YQAASKQSFESLADAVLTYENIQNNGRWRTFSAGPLLRQGDRHPQVSQLKAHLQWLGDLP 112 Query: 126 PSKGLSVA---FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 P LS+ FD + A+ FQ RH + G++ T +NVP RI QL +N+ R Sbjct: 113 PQDILSLGSRLFDRALHQALLRFQARHSVKADGVLGPKTRALLNVPPWQRIDQLVLNMYR 172 Query: 183 IKKLLEQKMGLR---YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 +Q+ + Y+ +N+P +L + G+V L +VG+ RQTP + + +++ Sbjct: 173 -----QQQNEINDDVYLHINLPEYNLRFYQFGEVLLEMRAVVGKRTRQTPEFSAAVTKLI 227 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE---KGKEVFVEEVDWNS--PEPP 294 NP W +P+SI +D++ L DP++L+ N+ ++ EV +VD++ Sbjct: 228 INPDWNVPKSIAYRDILPKLHNDPEFLRKRNLRVVSGWQLPRVEVPEHQVDFDRMYQGAE 287 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 + F + PG+ N + K + S N+ Y+HDT + LF+ R +SGC+R+ + L Sbjct: 288 YYRFWEPPGETNTLGRMKFQLDSDNSIYLHDTQQKNLFDAESRAFSSGCIRLESPRALAD 347 Query: 355 WLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 L++ W+ ++ + +++ + VH Y +AW K ++ F +D+Y D+ Sbjct: 348 TLMRVANQWTPEVLDPLFDGPDMIKLRVGKNILVHVTYWTAWLDKRGVLHFANDMYERDS 407 Query: 415 VHVGII 420 V ++ Sbjct: 408 VDFAVM 413 >gi|153829587|ref|ZP_01982254.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|229515643|ref|ZP_04405102.1| hypothetical protein VCB_003301 [Vibrio cholerae TMA 21] gi|148874921|gb|EDL73056.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|229347412|gb|EEO12372.1| hypothetical protein VCB_003301 [Vibrio cholerae TMA 21] Length = 524 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 154/290 (53%), Gaps = 15/290 (5%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D +E +K FQ HGL P G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 234 YDTSLEKPIKQFQKMHGLQPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSM 293 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ + Sbjct: 294 --IVVNVPGFDMKYWDAGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVE 351 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL ++ + +I ++ +DW + EP F + RQ G NA+ Sbjct: 352 DILPMVKRDSEYLANHRMEIIRGWSDPEVIDPALIDWETVEPETFPYRLRQQAGVQNALG 411 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRYHI 368 + K + Y+HDTP LFNN R +SGC+RV N LL + T + + Sbjct: 412 TYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPV 471 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 T + L +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 472 -------STQAIALKKRIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|15641281|ref|NP_230913.1| hypothetical protein VC1268 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227081440|ref|YP_002809991.1| hypothetical protein VCM66_1223 [Vibrio cholerae M66-2] gi|229505145|ref|ZP_04394655.1| hypothetical protein VCF_000353 [Vibrio cholerae BX 330286] gi|229511183|ref|ZP_04400662.1| hypothetical protein VCE_002590 [Vibrio cholerae B33] gi|229518302|ref|ZP_04407746.1| hypothetical protein VCC_002326 [Vibrio cholerae RC9] gi|229608165|ref|YP_002878813.1| hypothetical protein VCD_003083 [Vibrio cholerae MJ-1236] gi|298498640|ref|ZP_07008447.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9655753|gb|AAF94427.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227009328|gb|ACP05540.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229345017|gb|EEO09991.1| hypothetical protein VCC_002326 [Vibrio cholerae RC9] gi|229351148|gb|EEO16089.1| hypothetical protein VCE_002590 [Vibrio cholerae B33] gi|229357368|gb|EEO22285.1| hypothetical protein VCF_000353 [Vibrio cholerae BX 330286] gi|229370820|gb|ACQ61243.1| hypothetical protein VCD_003083 [Vibrio cholerae MJ-1236] gi|297542973|gb|EFH79023.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 524 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 155/290 (53%), Gaps = 15/290 (5%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +DA +E +K FQ HGL G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 234 YDASLEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSM 293 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ + G+ S V+VG+ R TP+++++++ ++ NP W +P I+ + Sbjct: 294 --IVVNVPGFDMKYWDAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVE 351 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL ++++ +I ++ +DW + EP F + RQ G NA+ Sbjct: 352 DILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALG 411 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRYHI 368 + K + Y+HDTP LFNN R +SGC+RV N LL + T + + Sbjct: 412 TYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPV 471 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 T + L +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 472 -------STQAIALKKRIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|254848392|ref|ZP_05237742.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255745664|ref|ZP_05419612.1| L,D-transpeptidase YcbB [Vibrio cholera CIRS 101] gi|262159059|ref|ZP_06030171.1| L,D-transpeptidase YcbB [Vibrio cholerae INDRE 91/1] gi|254844097|gb|EET22511.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255736739|gb|EET92136.1| L,D-transpeptidase YcbB [Vibrio cholera CIRS 101] gi|262029244|gb|EEY47896.1| L,D-transpeptidase YcbB [Vibrio cholerae INDRE 91/1] Length = 523 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 155/290 (53%), Gaps = 15/290 (5%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +DA +E +K FQ HGL G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 233 YDASLEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSM 292 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ + G+ S V+VG+ R TP+++++++ ++ NP W +P I+ + Sbjct: 293 --IVVNVPGFDMKYWDAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVE 350 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL ++++ +I ++ +DW + EP F + RQ G NA+ Sbjct: 351 DILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALG 410 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRYHI 368 + K + Y+HDTP LFNN R +SGC+RV N LL + T + + Sbjct: 411 TYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPV 470 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 T + L +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 471 -------STQAIALKKRIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 512 >gi|261211004|ref|ZP_05925294.1| hypothetical protein VCJ_001260 [Vibrio sp. RC341] gi|260839979|gb|EEX66579.1| hypothetical protein VCJ_001260 [Vibrio sp. RC341] Length = 522 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 92/309 (29%), Positives = 162/309 (52%), Gaps = 13/309 (4%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 LR +++ D+ + +D + A+K FQ HGL G++ T++ +N V R+ Sbjct: 212 LRRLSLVNLDITDVREDVAFYDQSLVKAIKQFQSMHGLKTDGVIGPETIKWLNKSVTERV 271 Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 L +N R++ L Q ++VN+P ++ + G+ + V+VGRV R TP++++ Sbjct: 272 TLLALNAERLR--LWQTPQDTVIVVNVPGFDMKYWDAGREVFEAKVVVGRVTRPTPVMNT 329 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV--EEVDWNSP 291 +++ ++ NP W +PR I+ +D++ ++++D QYL ++ I +I V +E+DW + Sbjct: 330 KLDSLIINPTWNVPRKIMVEDILPMVKRDHQYLAEHQIEIIRGWSDPEVVDPQEIDWATV 389 Query: 292 EPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 +P F + RQ G NA+ K + Y+HDTP LFNN R +SGC+RV N Sbjct: 390 DPETFPYRLRQQAGVQNALGMYKFNTPNSRAIYLHDTPSKHLFNNAARAFSSGCIRVENA 449 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 LL + +V T KT + L +PV +Y + W + ++ +RDDI Sbjct: 450 QKFAQALLDQQGI----VLNDVPDTTKT--IALKKRIPVQIIYQTVWY-EGGVLNYRDDI 502 Query: 410 YGLDNVHVG 418 Y D++ +G Sbjct: 503 YRYDSLALG 511 >gi|153823871|ref|ZP_01976538.1| putative peptidoglycan binding domain protein [Vibrio cholerae B33] gi|126518613|gb|EAZ75836.1| putative peptidoglycan binding domain protein [Vibrio cholerae B33] Length = 519 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/290 (28%), Positives = 155/290 (53%), Gaps = 15/290 (5%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +DA +E +K FQ HGL G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 233 YDASLEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSM 292 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ + G+ S V+VG+ R TP+++++++ ++ NP W +P I+ + Sbjct: 293 --IVVNVPGFDMKYWDAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVE 350 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL ++++ +I ++ +DW + EP F + RQ G NA+ Sbjct: 351 DILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALG 410 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRYHI 368 + K + Y+HDTP LFNN R +SGC+RV N LL + T + + Sbjct: 411 TYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPV 470 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 T + L +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 471 -------STQAIALKKRIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 512 >gi|34558804|gb|AAQ75149.1| conserved hypothetical protein [Alvinella pompejana epibiont 6C6] Length = 559 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 94/328 (28%), Positives = 169/328 (51%), Gaps = 20/328 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKG--LSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L G+ + +++ERL + GD G S FD ++SA+ ++ R L+ +G++D Sbjct: 211 LKFGDVDRKIAKIKERLAMEGDYPKESGAIYSDIFDEKLKSAIYRYKERFNLEQNGIIDK 270 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 T+ MN P+ L I + NL ++K + K +++VNIP +++ ++G L + Sbjct: 271 VTIYYMNKPISLLIDSIITNLDKLK-VSPNKFPDEFIMVNIPDFTMDYYKDGISNLHMSA 329 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID--EK 277 +VGR R TPI HS++ + NP W IP ++++KD++ L ++P Y++ +NIH+ + Sbjct: 330 VVGRDKRPTPIFHSKMTYLELNPNWNIPENLVRKDLIPTLIEEPDYMEKHNIHVFYGWKD 389 Query: 278 GKEV----------FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTP 327 KE+ +++E + + P + F Q PG NA+ K F ++ + Y+HDT Sbjct: 390 KKEIKNLDINKLTRYLDEKNGHIP----YRFVQYPGDDNALGRIKFMFPNKYSVYLHDTD 445 Query: 328 EPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVP 387 LF R +SGC+R+ L L + I+ +T K ++ +P Sbjct: 446 NKSLFERRYRVYSSGCMRISKPFQLLEALKPHLKSSDIAQIDRYRQTLKNKIMRFTKSLP 505 Query: 388 VHFVYISAWSPKDSIIQFRDDIYGLDNV 415 V+ Y + + +D ++ FR DIYG D + Sbjct: 506 VYTTYFTVFK-RDGMVFFRKDIYGYDKM 532 >gi|89073969|ref|ZP_01160475.1| hypothetical protein SKA34_15405 [Photobacterium sp. SKA34] gi|89050297|gb|EAR55801.1| hypothetical protein SKA34_15405 [Photobacterium sp. SKA34] Length = 579 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 93/280 (33%), Positives = 151/280 (53%), Gaps = 11/280 (3%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKMGLRYVLVN 199 AVK FQ RHGL G++ + T + + + + RIR L +N R++ ++ G ++VN Sbjct: 289 AVKRFQERHGLKNDGVIGTQTQQWLALNIKERIRLLALNAQRMRLWSVKPDTG---IVVN 345 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IP+ + G+ L S VIVGR R TP++ S I ++FNPYW +P SI++KD+M + Sbjct: 346 IPSFYMNLWLEGEKVLGSKVIVGRPSRHTPMIDSDIQSVVFNPYWNVPNSIMKKDIMPKV 405 Query: 260 RQDPQYLKDNNIHMID--EKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEF 315 R++ YL ++N +I + +++ + + ++ P F + RQ PGK NA+ K F Sbjct: 406 RRNRNYLANHNYEVIKGWDNAQKIAINSIPYHLLSPNRFPYRLRQKPGKRNALGLYKFNF 465 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 + Y+HDT LF R +SGC+RV L LL+ + + S + + ++R Sbjct: 466 PNNQAIYLHDTASRSLFKKNERALSSGCIRVEQAKSLARVLLEYSGS-SEQRFDSLSRSR 524 Query: 376 KTTPVKLA--TEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 KT + L VPV +Y +AW ++ +R DIY D Sbjct: 525 KTRTIVLGDNKSVPVDLIYQTAWVDDSGLVHYRSDIYQYD 564 >gi|84503420|ref|ZP_01001480.1| peptidoglycan binding protein, putative [Oceanicola batsensis HTCC2597] gi|84388207|gb|EAQ01159.1| peptidoglycan binding protein, putative [Oceanicola batsensis HTCC2597] Length = 539 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 97/331 (29%), Positives = 171/331 (51%), Gaps = 9/331 (2%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 I S G + + L G++ +V LR RL+ G L + + V +D +ESAV FQ Sbjct: 196 IASGGFGATVQAQSLEPGDTGEAVVALRNRLMTMGYL--PRRVGVTYDRDMESAVLRFQA 253 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 HGL G+ ++T+ +NVPV+ R++ + V + R ++ + + +G R+VLVN+ Sbjct: 254 DHGLSEDGVAGTATIAEINVPVEERLKSVIVAMER-ERWINRDLGDRHVLVNLTDFHARI 312 Query: 208 VENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 +ENGK+ ++ ++G+ +TP + ++ NP W +PRSI + + +++P Sbjct: 313 MENGKIYFKTRSVIGKNLSTHRTPEFSDVMEHMIVNPTWNVPRSIAVSEYLPAFKRNP-- 370 Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYM 323 ++++ +ID +G+ V V++ + NF F +Q P NA+ K F + +N Y+ Sbjct: 371 YSNSHLKLIDARGRVVDRGSVNFAAYSKRNFPFDLKQPPSSRNALGLVKFMFPNVHNIYL 430 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 HDTP LF+ VR + GC+R+ + LL + T + T + LA Sbjct: 431 HDTPAKSLFSRDVRAFSHGCIRLNEPFEFAHALLAWQSDDPEGLFRSTLNTGRETKIDLA 490 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +PVH +Y +A S + +R D+YG D Sbjct: 491 SPLPVHLIYRTAMSQPKGQMSYRRDVYGRDG 521 >gi|163759200|ref|ZP_02166286.1| hypothetical protein HPDFL43_05530 [Hoeflea phototrophica DFL-43] gi|162283604|gb|EDQ33889.1| hypothetical protein HPDFL43_05530 [Hoeflea phototrophica DFL-43] Length = 125 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 63/119 (52%), Positives = 91/119 (76%) Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 +FRQDPGK NAM+STKI F++ + YMHDTP+ +FN ++RFE+SGCVRV+N+ DL+ WL Sbjct: 1 MFRQDPGKGNAMSSTKINFHNPHAVYMHDTPQQGVFNQLMRFESSGCVRVQNVRDLNTWL 60 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 L+DTP W+R IE + + ++T + L+ VPV+F Y +AW+ +D ++QFRDD+Y D V Sbjct: 61 LRDTPGWNRQAIEATIASGESTEILLSEPVPVYFTYFTAWASEDGVVQFRDDVYQRDGV 119 >gi|86357997|ref|YP_469889.1| hypothetical protein RHE_CH02382 [Rhizobium etli CFN 42] gi|86282099|gb|ABC91162.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 633 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 101/323 (31%), Positives = 155/323 (47%), Gaps = 18/323 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA---------VKLFQMRHGLD 152 L G SS + + + L G + F AY S+ V+ FQ HGL Sbjct: 300 LKPGESSSEIANIVKALQKHGSETLKTDHAATFAAYAGSSDYSPDIVSLVEDFQKEHGLK 359 Query: 153 PSGMVDSSTLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 P G++ +T+ AM +I +L V + +++ L E +G RYV++N PA + Sbjct: 360 PDGVIGQATVRAMTGGDTNTSKIDKLVVAMEQVRWLPED-LGSRYVMINQPAYMAYYHND 418 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 GK L V+VG + QT + I + FNP+W +P+SII +M+ LR DP YL D Sbjct: 419 GKEQLSMRVVVGGKNNQTYFFNDEIETVEFNPFWGVPQSIIINEMLPKLRSDPNYL-DQL 477 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 + ++ G V VDW N RQ P NA+ KI F + + YMHDTP Sbjct: 478 GYEVEVNGHAVASSSVDWYG-STANVSVRQPPSSDNALGELKILFPNSHAIYMHDTPSKS 536 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 F +R + GCVR+ N + +L T + + + + VK+ ++PV+ Sbjct: 537 FFKRDMRALSHGCVRLANPRAMAAAVLGTTAD----DVARQIASGQNHAVKVPQKIPVYV 592 Query: 391 VYISAWSPKDSIIQFRDDIYGLD 413 Y +AW KD ++++ DD+YG D Sbjct: 593 SYFTAWPNKDGVVEYFDDVYGRD 615 >gi|319957846|ref|YP_004169109.1| erfk/ybis/ycfs/ynhg family protein [Nitratifractor salsuginis DSM 16511] gi|319420250|gb|ADV47360.1| ErfK/YbiS/YcfS/YnhG family protein [Nitratifractor salsuginis DSM 16511] Length = 575 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 93/324 (28%), Positives = 162/324 (50%), Gaps = 10/324 (3%) Query: 80 KAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 K +A + +P+L R L + ++ + +++ L GD FD Sbjct: 199 KLLALLAKYRTMPNFPKLSYGRTLRINSTDSRIPQIKRMLKFFGDYPKHFAEDNQFDRPF 258 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 A++ F+ R L P VD+ ++A+N +R++ VNL ++K L + YV V Sbjct: 259 AQAIRSFRSRFKLPPGNTVDNKVIQALNTTKKEYLRKILVNLEKLK-LYPHRWEPDYVEV 317 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 N+P + NG+ S V+VGR+DR TPI S++ ++ NP W IP +++++D++ + Sbjct: 318 NVPEFKMRFYRNGQPIFSSDVVVGRIDRPTPIFDSKMTYMVLNPTWTIPDNLVRRDLIPM 377 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDW-------NSPEPPNFIFRQDPGKINAMAST 311 L+++P YL+ +NIH+ E+D+ + P + F Q P NA+ Sbjct: 378 LKKEPDYLQKHNIHVYTSYKPNAPEVELDFEKLFSYEHDTRPIPYRFVQFPSDQNALGRV 437 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID-LDVWLLKDTPTWSRYHIEE 370 K F ++ + Y+HDT LF R +SGC+RV D +D+ L +S I+E Sbjct: 438 KFMFPNKYSVYLHDTDNKKLFGYRYRVFSSGCMRVAKPFDFMDLLLHYARGNYSEGKIQE 497 Query: 371 VVKTRKTTPVKLATEVPVHFVYIS 394 ++ + K T ++L +PVH VY + Sbjct: 498 ILASNKPTTIRLKKAIPVHIVYFT 521 >gi|332288328|ref|YP_004419180.1| L,D-transpeptidase catalytic domain protein [Gallibacterium anatis UMN179] gi|330431224|gb|AEC16283.1| L,D-transpeptidase catalytic domain protein [Gallibacterium anatis UMN179] Length = 469 Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 135/243 (55%), Gaps = 6/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + +L +NL R++ + + + G + VNIP L NG+ L S VIVG+ R+TP++ Sbjct: 213 LAKLAINLQRLRFIPDFETG---IFVNIPTFQLHYYRNGEEILSSRVIVGKKARKTPVMM 269 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 S+++ I+ NP W P +I +D++ +R+DP Y+ N +ID KG + +DW + Sbjct: 270 SKLSNIVVNPPWNAPVRLINEDLIPKVRKDPSYIYRNGYTIIDSKGNTIDPYTIDWENMT 329 Query: 293 PPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 F + RQ PG +A+ + K S++ Y+HDTP LFNN R +SGC+RV Sbjct: 330 AKRFPYRLRQAPGGDSALGNFKFNMPSKDAIYLHDTPNHRLFNNKNRAISSGCIRVNKSD 389 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 +L LL + WS +V+K+RKTT V + + PV+ Y++AW+ + DIY Sbjct: 390 ELATLLLTEA-GWSVDKKAQVLKSRKTTSVPIQSTNPVYLYYVTAWADAQGKVHTVADIY 448 Query: 411 GLD 413 G D Sbjct: 449 GYD 451 >gi|152990487|ref|YP_001356209.1| hypothetical protein NIS_0738 [Nitratiruptor sp. SB155-2] gi|151422348|dbj|BAF69852.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 492 Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 106/338 (31%), Positives = 172/338 (50%), Gaps = 14/338 (4%) Query: 85 YQDILSRGGWPELPIRP----LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 Y++I RGGW + + L G V +LR RL+ G L +D ++ Sbjct: 149 YENIKKRGGWGVITLSNDYAYLLPGKKYDEVVQLRWRLMQEGYLKDQNMTDTVYDENLKL 208 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AV+ FQ RH L P G+V +TL+ +N V+ I ++ +N+ R++ L++ YV VNI Sbjct: 209 AVEEFQRRHFLKPDGIVGPTTLKVLNESVESIIEKILINIERLRWYLQEDKS--YVFVNI 266 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P L +G + S VIVGR +R TP++ I+ + NPYW P++II +D++ L+ Sbjct: 267 PQFRLFLWHDGDMVFDSKVIVGRKERPTPLMRHEISYAVLNPYWRAPKTIIAQDILPKLK 326 Query: 261 QDP--QYLKDNNIHMIDEKGKEVF-VEEVDWNSPEPPNF--IFRQDPGKINAMASTKIEF 315 + K+ I +D E + + W++ + F +F Q PG N + K+ F Sbjct: 327 AGKFEELEKEGIIASLDRYANETIPFDLIYWDAIDLSTFPIVFLQKPGPKNFLGFVKLMF 386 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 ++ + Y+HDT LF R +SGCVRV I+L L++ T ++ I + + Sbjct: 387 PNKYDVYLHDTNARDLFRYSYRALSSGCVRVEKPIEL-FHLVEGTLSYR--EIFDRLWDH 443 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +T V++ + PV+ +YI+ D I F DIY LD Sbjct: 444 QTKKVRIHPKFPVYLMYITVMKEDDGNIYFYPDIYQLD 481 >gi|288941918|ref|YP_003444158.1| ErfK/YbiS/YcfS/YnhG family protein [Allochromatium vinosum DSM 180] gi|288897290|gb|ADC63126.1| ErfK/YbiS/YcfS/YnhG family protein [Allochromatium vinosum DSM 180] Length = 557 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 104/316 (32%), Positives = 159/316 (50%), Gaps = 21/316 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L LG+ V +LRERL + G + P + FDA + AV+ FQ HGL G V Sbjct: 212 LSLGSRGERVAQLRERLRLLGYSERTPPDR--PETFDAALSEAVRAFQRGHGLGADGAVG 269 Query: 159 SSTLEAMNVPVD-LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 TL +N PVD RI ++++NL R++ L E + YV V++ V ++ + Sbjct: 270 PQTLAVINDPVDESRIERIRINLERMRWLYED-LPPDYVFVDVADYMAHLVRGREIAWST 328 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 VIVG+ D QTP+ R++ ++ NP W +P SI QK + D I + Sbjct: 329 RVIVGKEDSQTPMFRDRLDHLVLNPTWTMPVSI-QKTFTKV--------SDKYILIDRRT 379 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 G+ V N+ + + Q PG NA+ K F +R+ YMHDTP LF R Sbjct: 380 GRRV----SGGNATDYKRYRVVQQPGPDNALGRVKFMFPNRHAVYMHDTPSKALFGRSAR 435 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 + GCVRV+N + LL+++ +W R I+ V++ KT V L+ +PV Y++A + Sbjct: 436 ALSHGCVRVQNPMKFAELLLEES-SWDRARIDSVLEGAKTRYVNLSEPLPVLLYYLTARA 494 Query: 398 PKDSIIQFRDDIYGLD 413 + ++ R D+YG D Sbjct: 495 DAEGNLRVRRDVYGRD 510 >gi|229525867|ref|ZP_04415272.1| hypothetical protein VCA_003512 [Vibrio cholerae bv. albensis VL426] gi|229339448|gb|EEO04465.1| hypothetical protein VCA_003512 [Vibrio cholerae bv. albensis VL426] Length = 524 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 83/290 (28%), Positives = 154/290 (53%), Gaps = 15/290 (5%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +DA +E +K FQ HGL G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 234 YDASLEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSM 293 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ + Sbjct: 294 --IVVNVPGFDMKYWDAGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVE 351 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL ++ + +I ++ +DW + EP F + RQ G NA+ Sbjct: 352 DILPMVKRDSEYLANHRMEIIRGWSDPEVIDPALIDWETVEPETFPYRLRQQAGVQNALG 411 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRYHI 368 + K + Y+HDTP LFNN R +SGC+RV N LL + T + + Sbjct: 412 TYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPV 471 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 T + L +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 472 -------STQAIALKKRIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|253688167|ref|YP_003017357.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754745|gb|ACT12821.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 576 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 95/293 (32%), Positives = 153/293 (52%), Gaps = 11/293 (3%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 G ++ VE AVK FQ GL+ G++ T + +NV +R L +N+ R++ L + Sbjct: 273 GAAIYTGELVE-AVKRFQHWQGLEDDGVIGKRTRDWLNVSPQMRATLLALNIQRLRLLPD 331 Query: 189 Q-KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 G ++VNIP SL ++G L S VIVG+ R+TP++ S + ++ NP W +P Sbjct: 332 NVHTG---IMVNIPNYSLIYYQDGAERLSSRVIVGQPKRKTPLMSSSLYNVVVNPPWNVP 388 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV---EEVDWN--SPEPPNFIFRQDP 302 ++I++D++ + +DP YL+ + ++ ++ V +DW SPE + RQ P Sbjct: 389 TTLIRQDIIPKVVRDPGYLQRHGYTVLSGWSQDAEVIDPSMIDWQIVSPERFPYRLRQAP 448 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ K + Y+HDTP LF +R +SGCVRV +L LL+D Sbjct: 449 GANNSLGRYKFNMPNSEAIYLHDTPNHNLFQRDIRALSSGCVRVNKASELASMLLQDA-G 507 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 W+ I + TT V + +PV+ Y++AW +D QFR DIY D+ Sbjct: 508 WNNSRISSTLDQGNTTFVSMKHRIPVNLYYLTAWVAEDGRPQFRTDIYNYDDT 560 >gi|260363711|ref|ZP_05776495.1| putative amidase [Vibrio parahaemolyticus K5030] gi|260879722|ref|ZP_05892077.1| putative amidase [Vibrio parahaemolyticus AN-5034] gi|260898804|ref|ZP_05907245.1| putative amidase [Vibrio parahaemolyticus Peru-466] gi|260901617|ref|ZP_05910012.1| putative amidase [Vibrio parahaemolyticus AQ4037] gi|308086665|gb|EFO36360.1| putative amidase [Vibrio parahaemolyticus Peru-466] gi|308093310|gb|EFO43005.1| putative amidase [Vibrio parahaemolyticus AN-5034] gi|308108675|gb|EFO46215.1| putative amidase [Vibrio parahaemolyticus AQ4037] gi|308113388|gb|EFO50928.1| putative amidase [Vibrio parahaemolyticus K5030] Length = 513 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 109/377 (28%), Positives = 178/377 (47%), Gaps = 21/377 (5%) Query: 45 HSIVNDRFDNFLA--RVDMGIDSDIPIISKETIAQTEKAIAFY-QDILSRGGWPELPIRP 101 + I + D FLA R + +D+ + ++ FY Q LSR G P Sbjct: 149 NEITVGKLDQFLASLRSPLQMDASFNTVFASLSEFSQYQYPFYEQKGLSRVGDP------ 202 Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + N S V+R+ I+ D+ +D +E AVK FQ HGL+ G++ +T Sbjct: 203 --IENKSTLVERM---AIVGVDVSYIDSEIPQYDENLELAVKEFQRIHGLNQDGVIGPNT 257 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 + +N R+ L +N R + +++ + V VN+P + +G+ S V+V Sbjct: 258 IRWINFSPQQRLHLLALNAERSRIWAKERDNV--VFVNVPGYEVTYWHDGQPLFESKVVV 315 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 GR R+TPI+ ++ ++ NP W +P I+ KD++ ++++P YL ++NI +I Sbjct: 316 GRASRKTPIMTGTLDSVILNPTWNVPWKIMVKDIIPKVKRNPMYLMEHNIQIIRSWTSRE 375 Query: 282 FVE--EVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 ++ ++W + P F + RQ G NA+ K + Y+HDTP LF R Sbjct: 376 IIDPTTINWATVNPRTFPYRMRQASGSHNALGLYKFNMPNPQAIYLHDTPSKNLFQQDRR 435 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGCVRV N L L K R + TT V L +PVH +Y +AW Sbjct: 436 AFSSGCVRVENADQLAELLFKTQGLEERLEKKRESARSSTTSVPLGERIPVHIIYQTAWL 495 Query: 398 PKDSIIQFRDDIYGLDN 414 ++ + +RDDIY D+ Sbjct: 496 -EEGTLYYRDDIYKYDH 511 >gi|322832248|ref|YP_004212275.1| ErfK/YbiS/YcfS/YnhG family protein [Rahnella sp. Y9602] gi|321167449|gb|ADW73148.1| ErfK/YbiS/YcfS/YnhG family protein [Rahnella sp. Y9602] Length = 616 Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 95/291 (32%), Positives = 147/291 (50%), Gaps = 11/291 (3%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVN 199 AVK FQ GL+ G++ T + +N LR L +N+ R++ L G ++VN Sbjct: 324 AVKRFQKWQGLEADGIIGGRTRQWLNASPQLRATLLALNIQRLRILPGNVNTG---IMVN 380 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IP L NG L S VIVGR R+TP++ S +N ++ NP W +P +++++D++ Sbjct: 381 IPNYQLTYYLNGNEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTTLVREDIVPKA 440 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF--RQDPGKINAMASTKIE 314 +P Y + + ++ + V +DW P +F + RQ PG N++ K Sbjct: 441 MNNPGYFQQHGYQVLSGWSNDAEVIDPSMIDWAMISPNHFPYRIRQAPGVSNSLGRYKFN 500 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 S + Y+HDTP LF+ +R +SGCVRV +L LL+D W+ I ++ Sbjct: 501 MPSSDAIYLHDTPNHNLFSKDIRALSSGCVRVNKASELANMLLQDA-GWNDTRISSALQG 559 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-VHVGIIPLPE 424 TT V + +PV Y++AW D QFR DIY D+ V G LP+ Sbjct: 560 GNTTYVAIRHHIPVKLFYLTAWVADDGKPQFRTDIYNYDSTVRSGAQILPQ 610 >gi|28898690|ref|NP_798295.1| putative amidase [Vibrio parahaemolyticus RIMD 2210633] gi|28806908|dbj|BAC60179.1| putative amidase [Vibrio parahaemolyticus RIMD 2210633] Length = 529 Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 109/377 (28%), Positives = 178/377 (47%), Gaps = 21/377 (5%) Query: 45 HSIVNDRFDNFLA--RVDMGIDSDIPIISKETIAQTEKAIAFY-QDILSRGGWPELPIRP 101 + I + D FLA R + +D+ + ++ FY Q LSR G P Sbjct: 165 NEITVGKLDQFLASLRSPLQMDASFNTVFASLSEFSQYQYPFYEQKGLSRVGDP------ 218 Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + N S V+R+ I+ D+ +D +E AVK FQ HGL+ G++ +T Sbjct: 219 --IENKSTLVERM---AIVGVDVSYIDSEIPQYDENLELAVKEFQRIHGLNQDGVIGPNT 273 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 + +N R+ L +N R + +++ + V VN+P + +G+ S V+V Sbjct: 274 IRWINFSPQQRLHLLALNAERSRIWAKERDNV--VFVNVPGYEVTYWHDGQPLFESKVVV 331 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 GR R+TPI+ ++ ++ NP W +P I+ KD++ ++++P YL ++NI +I Sbjct: 332 GRASRKTPIMTGTLDSVILNPTWNVPWKIMVKDIIPKVKRNPMYLMEHNIQIIRSWTSRE 391 Query: 282 FVE--EVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 ++ ++W + P F + RQ G NA+ K + Y+HDTP LF R Sbjct: 392 IIDPTTINWATVNPRTFPYRMRQASGSHNALGLYKFNMPNPQAIYLHDTPSKNLFQQDRR 451 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGCVRV N L L K R + TT V L +PVH +Y +AW Sbjct: 452 AFSSGCVRVENADQLAELLFKTQGLEERLEKKRESARSSTTSVPLGERIPVHIIYQTAWL 511 Query: 398 PKDSIIQFRDDIYGLDN 414 ++ + +RDDIY D+ Sbjct: 512 -EEGTLYYRDDIYKYDH 527 >gi|153839457|ref|ZP_01992124.1| putative amidase [Vibrio parahaemolyticus AQ3810] gi|149747014|gb|EDM58002.1| putative amidase [Vibrio parahaemolyticus AQ3810] Length = 509 Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 109/377 (28%), Positives = 178/377 (47%), Gaps = 21/377 (5%) Query: 45 HSIVNDRFDNFLA--RVDMGIDSDIPIISKETIAQTEKAIAFY-QDILSRGGWPELPIRP 101 + I + D FLA R + +D+ + ++ FY Q LSR G P Sbjct: 145 NEITVGKLDQFLASLRSPLQMDASFNTVFASLSEFSQYQYPFYEQKGLSRVGDP------ 198 Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + N S V+R+ I+ D+ +D +E AVK FQ HGL+ G++ +T Sbjct: 199 --IENKSTLVERM---AIVGVDVSYIDSEIPQYDENLELAVKEFQRIHGLNQDGVIGPNT 253 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 + +N R+ L +N R + +++ + V VN+P + +G+ S V+V Sbjct: 254 IRWINFSPQQRLHLLALNAERSRIWAKERDNV--VFVNVPGYEVTYWHDGQPLFESKVVV 311 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 GR R+TPI+ ++ ++ NP W +P I+ KD++ ++++P YL ++NI +I Sbjct: 312 GRASRKTPIMTGTLDSVILNPTWNVPWKIMVKDIIPKVKRNPMYLMEHNIQIIRSWTSRE 371 Query: 282 FVE--EVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 ++ ++W + P F + RQ G NA+ K + Y+HDTP LF R Sbjct: 372 IIDPTTINWATVNPRTFPYRMRQASGSHNALGLYKFNMPNPQAIYLHDTPSKNLFQQDRR 431 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGCVRV N L L K R + TT V L +PVH +Y +AW Sbjct: 432 AFSSGCVRVENADQLAELLFKTQGLEERLEKKRESARSSTTSVPLGERIPVHIIYQTAWL 491 Query: 398 PKDSIIQFRDDIYGLDN 414 ++ + +RDDIY D+ Sbjct: 492 -EEGTLYYRDDIYKYDH 507 >gi|120554149|ref|YP_958500.1| hypothetical protein Maqu_1223 [Marinobacter aquaeolei VT8] gi|120323998|gb|ABM18313.1| conserved hypothetical protein [Marinobacter aquaeolei VT8] Length = 318 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 92/269 (34%), Positives = 146/269 (54%), Gaps = 7/269 (2%) Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 + H L+ G+V T AMNVPV +RI Q++VNL R + +L + +VLV+I + Sbjct: 41 KQHHLLEEDGIVGRQTRAAMNVPVSVRIDQIRVNLERARWMLHGE-AEEFVLVDIAGYRI 99 Query: 206 EAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 NG++ RS ++VG+ R+TP L S I + NP W +P +I +DM+ +R+D Sbjct: 100 SYFRPNGEI-WRSRIVVGQPYRRTPSLRSMITHLTVNPTWTVPPTIFSEDMLPRIRRDIT 158 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 YL N+ +++ G+ + +DW +P + RQDPG NA+ + F + + Y+H Sbjct: 159 YLDRQNLSVLNFYGQWLDPNSIDWWNPG--GIMLRQDPGPTNALGQVVLRFPNNHLVYLH 216 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP LF+ +R +SGC+RV+ +++L LL+DT T I V+ +T + L Sbjct: 217 DTPSQGLFSRQLRAFSSGCIRVQGVLELAQLLLEDTDT--AADINSVIAEGETRNIHLKR 274 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 VPV Y + D + FR D+Y D Sbjct: 275 SVPVILHYWTVHPGMDRELVFRPDVYQHD 303 >gi|255263285|ref|ZP_05342627.1| peptidoglycan-binding domain 1 protein [Thalassiobium sp. R2A62] gi|255105620|gb|EET48294.1| peptidoglycan-binding domain 1 protein [Thalassiobium sp. R2A62] Length = 533 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 96/333 (28%), Positives = 166/333 (49%), Gaps = 9/333 (2%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + +L++GG+ L G S V LR RLI G L+ + + +DA +++AV+ F Sbjct: 188 EQLLAQGGFGARVSGTLAPGTSGQQVVNLRNRLIAMGFLEGNA--TQTYDANIQAAVQRF 245 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 Q HGL+ G T+ +N + R++ + V + R ++ + + G R+V VN+ + Sbjct: 246 QTAHGLNADGSAGQGTVTELNKSAESRLQAVIVAMER-ERWINRPRGTRHVWVNLTDFTA 304 Query: 206 EAVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 ++N V ++ ++G D R++P + ++ NP W +PRSI K+ + L+ +P Sbjct: 305 SIIDNDAVTFQTRSVIGANDSNRRSPEFSDVMEFMVINPSWYVPRSIATKEYLPRLQSNP 364 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNT 321 + +++ + D +G+ V V+++ F F RQ P + NA+ K F ++ N Sbjct: 365 NAV--SHLEITDSRGRVVNRSSVNFSQYSARTFPFNMRQPPSRGNALGLVKFMFPNQYNI 422 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK 381 Y+HDTP LF VR + GC+R+ + D LL + ++T V Sbjct: 423 YLHDTPAKNLFGREVRAYSHGCIRLNDPFDFAYALLAKQTADPEGFFQAKLRTAAEARVN 482 Query: 382 LATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 L VPVH VY +A++ + FR DIYG D Sbjct: 483 LNQPVPVHIVYRTAFTDVRGTLNFRRDIYGRDG 515 >gi|254226414|ref|ZP_04920001.1| conserved hypothetical protein [Vibrio cholerae V51] gi|125621036|gb|EAZ49383.1| conserved hypothetical protein [Vibrio cholerae V51] Length = 524 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 154/290 (53%), Gaps = 15/290 (5%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D +E +K FQ HGL P G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 234 YDTSLEKPIKQFQKMHGLQPDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSM 293 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ + Sbjct: 294 --IVVNVPGFDMKYWDVGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVE 351 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL ++ + +I ++ +DW + +P F + RQ G NA+ Sbjct: 352 DILPMVKRDSEYLANHRMEIIRGWSDPEVIDPALIDWETVDPETFPYRLRQQAGVQNALG 411 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRYHI 368 + K + Y+HDTP LFNN R +SGC+RV N LL + T + + Sbjct: 412 TYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPV 471 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 T + L +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 472 -------STQAIALKKRIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 513 >gi|241767412|ref|ZP_04765115.1| ErfK/YbiS/YcfS/YnhG family protein [Acidovorax delafieldii 2AN] gi|241361827|gb|EER58083.1| ErfK/YbiS/YcfS/YnhG family protein [Acidovorax delafieldii 2AN] Length = 322 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 151/292 (51%), Gaps = 16/292 (5%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK--KLLEQKM 191 +D +++ VK FQ RH L G++ TL+A+ VP R RQ+++ + R++ LL Sbjct: 12 YDEALQNGVKAFQERHALATDGVIGKGTLDALAVPPAARARQIELAMERLRWTPLLR--- 68 Query: 192 GLRYVLVNIPAASLEAVE--NGKVGLR--STVIVGR-VDRQTPILHSRINRIMFNPYWVI 246 G R ++VNIP L A E NG+V L+ VIVG+ +D +TP+ + I F+PYW + Sbjct: 69 GPRMIVVNIPEFVLRAYEVHNGQVSLQLAMKVIVGKALDTRTPLFDEDMRFIEFSPYWNV 128 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEPPNFIFRQDPG 303 P SI + + + LR+DP Y + + G+ + E +D + RQ PG Sbjct: 129 PPSIARSETIPRLRRDPGYFDQQGLEFVGANGQVHTALAAEHLD--AVLRGQMRIRQRPG 186 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 NA+ K F + +N Y+H TP P LF R + GCVRV + + L ++L++ P W Sbjct: 187 PKNALGDIKFVFPNNSNIYLHHTPAPALFQRDRRDFSHGCVRVEDPVALAQFVLRNDPAW 246 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 I E + ++ ++LA +PV Y +A K F D+YG D + Sbjct: 247 PEPRIREAMARGQSATLRLAEPLPVVIAYSTAIV-KQGKPHFFADLYGQDKL 297 >gi|260776045|ref|ZP_05884940.1| hypothetical protein VIC_001429 [Vibrio coralliilyticus ATCC BAA-450] gi|260607268|gb|EEX33533.1| hypothetical protein VIC_001429 [Vibrio coralliilyticus ATCC BAA-450] Length = 517 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 90/289 (31%), Positives = 153/289 (52%), Gaps = 9/289 (3%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D +E+AVK FQ HGL G++ T+ +N+ R+ L +N R + ++ + Sbjct: 232 YDVTLETAVKQFQRLHGLTDDGIIGPDTIRWLNISPSERLSILALNAERGRLWPIERDTI 291 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ +G+ S V+VGR R TP++ ++++ ++ NP W +P I+ + Sbjct: 292 --IVVNVPGFEMKYWYSGQEVFESKVVVGRKGRPTPMMTTKLDSLILNPTWNVPWKIMVE 349 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFV--EEVDWNSPEPPNFIFR--QDPGKINAMA 309 D++ +++DP+YL NI ++ + G + + E++DW + P F +R Q G NA+ Sbjct: 350 DIIPKVKEDPEYLVRQNITIVPKWGSKELINPEDIDWQNMRPSAFPYRMTQLSGNNNALG 409 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K +R Y+HDTP LF+ R +SGC+RV + LL+ E Sbjct: 410 LYKFNTPNRRAIYLHDTPSKNLFDEASRAFSSGCIRVEHADQFATRLLESQGLDMSTLDE 469 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 E + K+ P+K VPVH +Y +AWS + I +RDDIY D G Sbjct: 470 EELAANKSIPLK--QRVPVHIIYQTAWS-EGGKIHYRDDIYRWDRFSYG 515 >gi|197106129|ref|YP_002131506.1| peptidoglycan binding domain protein [Phenylobacterium zucineum HLK1] gi|196479549|gb|ACG79077.1| peptidoglycan binding domain protein [Phenylobacterium zucineum HLK1] Length = 510 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 105/337 (31%), Positives = 159/337 (47%), Gaps = 18/337 (5%) Query: 80 KAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + +A Y++I + GGW +P + +G++ V LR RL D + S FD + Sbjct: 174 RGLARYREIAAAGGWKTIPAGSSMAIGSTDPRVPALRARLAAE-DPQLTDLTSPTFDPAL 232 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 + AV Q R GL P G+V + TL +N PV RI Q+ NL R + L M V V Sbjct: 233 QEAVVRAQKRFGLKPDGVVGNGTLAFLNQPVGQRILQIIANLERWR-WLPATMPATRVQV 291 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 N AA + + K L + G+ +TP+L S I+ ++ NP W +P I +++ Sbjct: 292 NSGAAIVTLFRDDKPVLSMKAVSGKPGDETPMLVSAIHSVVINPPWNVPTRIANEELWPK 351 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR 318 R+DP Y N+ ++ +G V+ Q PG A+ K +F + Sbjct: 352 QRRDPGYFARNDYVVLPTEGGGSRVQ---------------QKPGPKAALGRFKFDFDNP 396 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 Y+HDTP F+ R + GCVR+ L LL P W R IE + T KT Sbjct: 397 FTVYLHDTPSKGTFDLYARQASHGCVRLEKAQLLAEALLASDPKWGREGIEAQLATGKTL 456 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 V L+ +VPV+ +Y +A++ D + FR D Y D + Sbjct: 457 RVSLSEQVPVYILYWTAFAGADGQMHFRADPYNWDRL 493 >gi|50121470|ref|YP_050637.1| hypothetical protein ECA2546 [Pectobacterium atrosepticum SCRI1043] gi|49611996|emb|CAG75445.1| putative exported protein [Pectobacterium atrosepticum SCRI1043] Length = 580 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/304 (31%), Positives = 155/304 (50%), Gaps = 11/304 (3%) Query: 120 ISGDLDPSKGLSVAFDAYVES---AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 ++G G + A D Y AVK FQ GL+ G++ T + +NV +R L Sbjct: 264 LTGQAPVVDGTTNADDRYTGELVDAVKRFQHWQGLEDDGVIGKRTRDWLNVSPQMRATLL 323 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 +N+ R++ LL + ++VNIP SL ++G L S VIVG+ R+TP++ S + Sbjct: 324 ALNIQRLR-LLPGNVHTG-IMVNIPNYSLIYYQDGAERLSSRVIVGQPKRKTPLMSSSLY 381 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV---EEVDWN--SP 291 ++ NP W +P ++I++D++ + +DP YL + ++ ++ V +DW SP Sbjct: 382 NVVVNPPWNVPTTLIRQDIIPKVVRDPGYLARHGYTVLSGWSQDAEVIDPSMIDWQVVSP 441 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 E + RQ PG N++ K + Y+HDTP LF +R +SGCVRV + Sbjct: 442 ERFPYRLRQAPGANNSLGRYKFNMPNSEAIYLHDTPNHNLFQRDIRALSSGCVRVNKASE 501 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LL+D W+ I + TT V + +PV+ Y++AW +D QFR DIY Sbjct: 502 LASMLLQDA-GWNNNRISSTLDQGNTTFVSMKHRIPVNLYYLTAWVAEDGRPQFRTDIYN 560 Query: 412 LDNV 415 D+ Sbjct: 561 YDDT 564 >gi|298293068|ref|YP_003695007.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] gi|296929579|gb|ADH90388.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] Length = 678 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 103/331 (31%), Positives = 166/331 (50%), Gaps = 13/331 (3%) Query: 96 ELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 ++P P L G+S V LR RL I G + ++ +D+++ AV+ FQ GL P Sbjct: 341 QVPAGPMLRPGDSDPRVPLLRARLGIGGAPEDTE-----YDSFLADAVRDFQKLSGLKPD 395 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G+V TL A+N ++ + N+ R + + Q + YV+VNIP + V N + Sbjct: 396 GVVGRGTLAALNGAGGDQMPDIIANMERWRWVPHQVAPV-YVMVNIPEFMVRVVVNEQTV 454 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 + V+VG+ D QTP++ + +FNP W +P SII+ +M+ L DP L+ I ++ Sbjct: 455 HETRVVVGKPDTQTPLMSENMQYAVFNPSWNVPPSIIRNEMLPKLMADPYALERQGIDVV 514 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 G+ V +DW S + FRQ+PG+ NA+ K F +++ Y+HDTP LF Sbjct: 515 -RNGRIVDPGAIDW-SRGATGYSFRQEPGERNALGRMKFMFPNKHAVYLHDTPSRSLFAR 572 Query: 335 VVRFETSGCVRVRNIIDLDVWLLK---DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 R + GCVRV + L WS+ I ++V + + V L PVH V Sbjct: 573 ERRAFSHGCVRVHEPLAFAEALFALGLPNEGWSQPRIAKLVGGNEKS-VTLKRRFPVHLV 631 Query: 392 YISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 Y + + + + R+D+YG++ I+ L Sbjct: 632 YFNTFVDGNGRLVSREDLYGINGATKAILGL 662 >gi|253990246|ref|YP_003041602.1| hypothetical protein PAU_02769 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781696|emb|CAQ84859.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 568 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 106/329 (32%), Positives = 164/329 (49%), Gaps = 12/329 (3%) Query: 94 WPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGL 151 WP+L + L G SS V LRE LI G LD S + + + V+ FQ GL Sbjct: 229 WPQLSDKGVLRPGQSSSDVTALREVLIRIGMLDELTTKSDNTYSPELVATVRNFQQWQGL 288 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVNIPAASLEAVEN 210 P G++ T + +N R + +N+ R++ + G ++VNIP SL+ N Sbjct: 289 APDGVIGKRTRDWLNTSPQDRAGLMALNIQRLRIIPGHVSTG---IMVNIPDYSLQYYLN 345 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 + L S VIVGR R+TPI+++ +N ++ NP W +P S+ +KD+ DP Y + Sbjct: 346 EQEVLNSKVIVGRPSRKTPIMNNVLNNVVINPPWSVPTSLARKDIAPRGVNDPGYFQRRG 405 Query: 271 IHMIDEKGKEVFVEE---VDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHD 325 + + V + +DWN P NF +R Q PG N++ K + + Y+HD Sbjct: 406 YVIFSSWRADASVIDPYTIDWNVVTPANFPYRIWQAPGPTNSLGRYKFNMPNSDAIYLHD 465 Query: 326 TPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATE 385 TP LF+ +R +SGCVRV +L LL D W++ + +K T V + Sbjct: 466 TPNHGLFDKDIRAISSGCVRVNKASELASMLLGDA-GWNQNRVSNTLKQGNTAYVNIPQR 524 Query: 386 VPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +PV+ Y++AW + + Q+R DIY DN Sbjct: 525 IPVYLYYLTAWVDELGVAQYRTDIYDYDN 553 >gi|119899290|ref|YP_934503.1| hypothetical protein azo3000 [Azoarcus sp. BH72] gi|119671703|emb|CAL95616.1| putative periplasmic protein [Azoarcus sp. BH72] Length = 543 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 102/329 (31%), Positives = 160/329 (48%), Gaps = 11/329 (3%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P P R L G + L RL + GDL L ++ + AVK FQ+RHGL Sbjct: 195 PLPPRRKLEPGQPYAGLALLARRLTLLGDLVADVPLPPRYEGALVDAVKRFQLRHGLAAD 254 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIK--KLLEQKMGLRYVLVNIPAASLEAVE--N 210 G+V TL + V R+RQ+++ + R++ LL+ R ++VN+P L A E + Sbjct: 255 GVVGRGTLAELEVAPAARVRQIELTMERLRWTPLLQAP---RMIVVNVPEFMLRAYEVRD 311 Query: 211 GK--VGLRSTVIVGR-VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 G+ V R VIVG+ +D +TP+ + I F+PYW +P SI + +++ LR++P Y Sbjct: 312 GRIEVAARMKVIVGKALDTRTPLFAEDMRFIEFSPYWNVPPSIARAELVPRLRREPGYWN 371 Query: 268 DNNIHMIDEKG-KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT 326 + G + ++ RQ PG NA+ K F + +N Y+H T Sbjct: 372 AQGFEFVAGDGTANPTLSTAGLDAVLRGTLRIRQRPGPHNALGDIKFVFPNNDNIYLHHT 431 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P P LF R + GC+RV ++L ++L+D P W I E + + +++AT + Sbjct: 432 PTPQLFARDRRDFSHGCIRVEAPVELARFVLRDQPEWDEARIREAMSAGSSKTIRVATPL 491 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 PV Y +A + F DIYG D + Sbjct: 492 PVLIAYGTAMVDAEGHAHFFRDIYGHDQL 520 >gi|167624211|ref|YP_001674505.1| peptidoglycan-binding domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167354233|gb|ABZ76846.1| Peptidoglycan-binding domain 1 protein [Shewanella halifaxensis HAW-EB4] Length = 444 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 105/357 (29%), Positives = 172/357 (48%), Gaps = 12/357 (3%) Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 + ++ + ++ ++ I K I Y+ L R WP + L LG + V +LR L Sbjct: 84 LSVEQYLNLVERKDIQSLRKLIKHYRS-LERYQWPTVAPMELRLGLRTKEVAKLRWILTQ 142 Query: 121 SGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 GD+ P FD VE+ +KLFQ RHG G + S TL ++N +R+ QLQ Sbjct: 143 VGDITPYSIPAYRESIFDPSVEAGLKLFQRRHGHAVDGKLGSQTLLSLNTEPSIRVAQLQ 202 Query: 178 VNL-MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 L R+K+ E K YVLVN+ +L +NG L VIVG+ +TP L++ I+ Sbjct: 203 NALKQRLKRFDEAK---DYVLVNLMDHTLRITKNGVEQLVMPVIVGKPTSKTPELNTTIS 259 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV--FVEEVD--WNSPE 292 I NP W P SII +D++ + + P YL++N+ + K + V +D + Sbjct: 260 VITVNPSWTPPASIIYQDILQSVDKQPNYLRNNDFAFKSNETKHIDHNVAGMDPKSLKNK 319 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + Q PG NA+ + + + ++HDTP LF R + GC+R+ Sbjct: 320 LKKSVLVQLPGTKNALGKYRFTIPNSDAIFLHDTPSKHLFKRQNRALSHGCIRLSQPALF 379 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 +L+ P +R + VK+++T +L +++ + +Y + W KD +Q R I Sbjct: 380 AQYLINKEPAETRLKFKNAVKSKQTRHFRLTSQLSIDVIYQTVWIDKDGSLQVRGTI 436 >gi|54309189|ref|YP_130209.1| amidase [Photobacterium profundum SS9] gi|46913621|emb|CAG20407.1| hypothetical amidase [Photobacterium profundum SS9] Length = 578 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 92/296 (31%), Positives = 155/296 (52%), Gaps = 17/296 (5%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL--LEQKMGLRYVLV 198 A+K FQ R+GL G++ ++T + +P R++ VN+ R + + ++ + ++ V Sbjct: 284 AIKRFQRRNGLADDGIIGAATTAQLVMPYTDIARRVAVNIQRFRNINVIDNQP---HIWV 340 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 NIP L+ E G V S VIVGR R T + S IN ++ NP W +P +I +KD++ Sbjct: 341 NIPDYMLKIFEQGNVIFESKVIVGRTSRPTNLFSSAINTMVVNPTWNVPETIKRKDVIPK 400 Query: 259 LRQDPQYLKDNNIHMIDE--KGKEVFVEEVDWNSPEPPNF--IFRQDPGKINAMASTKIE 314 ++ YL +N+ +++ E+ +++DW+S P F F+Q PG N++ K Sbjct: 401 VKHSRDYLTAHNMRILNSWRDRTEIPADQIDWSSVNPKTFPHEFQQGPGPSNSLGRVKFL 460 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 + + Y+HDTP LFN R +SGCVRV DL +++ + ++K Sbjct: 461 MPNDYSIYLHDTPARGLFNKTKRNLSSGCVRVEKAYDLANFIIDFQKRKNIESFNAMLKD 520 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPIDS 430 V+L+ + V FVY++AW + + +Q R+DIYG D+ P+ IDS Sbjct: 521 GDLDTVRLSQRLGVDFVYLTAWIDEKNTLQMREDIYGYDS--------PQKEAIDS 568 >gi|157961829|ref|YP_001501863.1| peptidoglycan-binding domain-containing protein [Shewanella pealeana ATCC 700345] gi|157846829|gb|ABV87328.1| Peptidoglycan-binding domain 1 protein [Shewanella pealeana ATCC 700345] Length = 434 Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 100/361 (27%), Positives = 178/361 (49%), Gaps = 18/361 (4%) Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERL 118 + + + + +I ++ IA + I Y+ L R WP + L LG V +LR L Sbjct: 81 LSLSTEQYLKLIKRKDIASYRRLIKQYK-ALDRFQWPMINPIELRLGLRVKEVAKLRWVL 139 Query: 119 IISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 + GD++P + +D VE+ +K FQ+RHGL G + + TL ++N R+ Q Sbjct: 140 VKLGDMEPHTIAAYRESIYDPSVEAGLKRFQIRHGLSVDGKLGNQTLLSINTKPSFRVVQ 199 Query: 176 LQVNL-MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 LQ L + +KK E++ YV VN+ +L +NG L+ VIVG+ +TP L++ Sbjct: 200 LQKALKLSLKKFDEEQ---EYVFVNLTDYTLRISKNGVEQLKMPVIVGKPSSKTPELNTV 256 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 ++ + NP W P SII +D+M + + P YL++NN + K + +E+ + + Sbjct: 257 VSVVTINPTWTPPASIIYQDIMKSVDEHPNYLRNNNFVL---KSYKTGIEDSNLAGMDTA 313 Query: 295 NFIFR-------QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 + Q G NA+ + + + ++HDTP LF R + GC+R+ Sbjct: 314 ILKHKLKTSTLVQRSGDKNALGKFRFTIPNTSAIFLHDTPNKYLFKRANRALSHGCIRLS 373 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 +L+ P +++ ++ +KT KT +L + +P++ +Y + W KD +Q R+ Sbjct: 374 EPERFAHYLISKEPLQTQHLFQKALKTNKTMHFRLRSRLPINIIYQNVWIDKDGRLQIRE 433 Query: 408 D 408 Sbjct: 434 S 434 >gi|89092899|ref|ZP_01165851.1| hypothetical protein MED92_10574 [Oceanospirillum sp. MED92] gi|89082924|gb|EAR62144.1| hypothetical protein MED92_10574 [Oceanospirillum sp. MED92] Length = 411 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 105/364 (28%), Positives = 173/364 (47%), Gaps = 13/364 (3%) Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 I K+ +A E I Q L+ WP L + L G+ S + +LR RL++ GDLD Sbjct: 52 IEKQILALEEHKIRLEQLSLA-NQWPSLLKTKLLRFGDESTVIPKLRTRLMLLGDLDELV 110 Query: 129 GLSV---AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + F + +A+ FQ RHGL G+ +T +NV R Q+ VN+ R+K Sbjct: 111 HCELDDPLFGIDLHNALIKFQKRHGLKADGIYGPATRRELNVSPSSRALQITVNIDRLKS 170 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 + RY+ VNIP L E+G L IVG+ R+TP+ ++ +NR++ NP W Sbjct: 171 F--NPVSDRYIQVNIPEYRLRLFEHGAEILSMKTIVGKKKRKTPVFNTTVNRLVINPSWH 228 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV---EEVDWNS-PEPPNFI-FRQ 300 +P+SI KD++ L DP+YLK N+ ++ G + ++VD + + N+ F + Sbjct: 229 VPKSIAYKDIVPELESDPEYLKKMNLKLVTGWGNSKTILSQDQVDLDKLYKGENYQRFWE 288 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P + S K + Y+HDT LF R +SGC+RV L L++ T Sbjct: 289 PPSNNGTLGSVKFLTTGPYSVYLHDTSAKRLFEKETRAFSSGCIRVEKPRSLANELMRMT 348 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 W + ++ + + + + +H Y +A+ ++ + FR D+Y D + + Sbjct: 349 HGWEKEKLDTYFNDTERKTINMPDTIDLHVTYWTAFIDENG-LNFRRDLYKKDRWEIAQL 407 Query: 421 PLPE 424 E Sbjct: 408 KQTE 411 >gi|254472994|ref|ZP_05086392.1| peptidoglycan-binding domain 1 [Pseudovibrio sp. JE062] gi|211957715|gb|EEA92917.1| peptidoglycan-binding domain 1 [Pseudovibrio sp. JE062] Length = 550 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 103/316 (32%), Positives = 163/316 (51%), Gaps = 16/316 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES---AVKLFQMRHGLDPSGMVD 158 L +G+ S V LRERL + P+ + + Y + AV+ FQ +GL P G V Sbjct: 234 LKVGSKSSRVALLRERLSV-----PT--VESQMNVYTQDLAYAVEAFQAANGLHPDGAVG 286 Query: 159 SSTLEAMNVPVDLR-IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 TL A+N V I+ + N+ R + + + +G ++ VNIP + G V + Sbjct: 287 PRTLLALNGRVSGDPIKDVIANMERWR-WMPRDLGETHLRVNIPEFMVRLNMEGFVLYET 345 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR-QDPQ-YLKDNNIHMID 275 V+VG+ +TP+ ++ ++ NPYW +P SI K+++ LR +PQ YL+ N ++ Sbjct: 346 RVVVGKRSNKTPVFSDKMQHVVVNPYWNVPYSIASKELLPELRASNPQSYLQKGNYEIV- 404 Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 GK V V+W++ RQ PG+ NA+ K F +++N Y+HDTP LFN Sbjct: 405 YGGKIVDPRRVNWDAVTFKQIRIRQRPGRGNALGKIKFMFPNKHNVYLHDTPSKSLFNRS 464 Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 R + GCVRV+N + L+ T + +I +V +K T V L ++PVH Y +A Sbjct: 465 ERAFSHGCVRVQNPFEFSDALMATQDTITGNYIRSLV-GKKQTQVNLQKDIPVHISYFTA 523 Query: 396 WSPKDSIIQFRDDIYG 411 + + +Q R DIYG Sbjct: 524 FVDEAGKLQRRPDIYG 539 >gi|149191672|ref|ZP_01869915.1| hypothetical protein VSAK1_04600 [Vibrio shilonii AK1] gi|148834513|gb|EDL51507.1| hypothetical protein VSAK1_04600 [Vibrio shilonii AK1] Length = 548 Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 85/284 (29%), Positives = 148/284 (52%), Gaps = 11/284 (3%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 FD ++ A++ FQ +GL+ G++ +T+E +N ++R L +N R + +Q+ + Sbjct: 258 FDELLDLAIREFQTIYGLNDDGIIGPNTIEWLNKSASDKLRILALNSERSRLWPQQRENI 317 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P LE + G+ S VIVGR RQTP+L ++++ ++ NP W +P I+ K Sbjct: 318 --IVVNVPNFQLEYWDEGEERFESRVIVGRASRQTPLLETKMDSLILNPTWNVPWKIMVK 375 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++Q+P YL I +++ + ++ +DW F + RQ G++NA+ Sbjct: 376 DIIPKVKQNPTYLFSQRIEILEGWNNQARIDPTMIDWQEVNARRFPYRMRQQAGELNALG 435 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K + ++HDTP LF+ +R +SGCVRV + LL+ +E Sbjct: 436 QYKFNTPNAQAIFLHDTPSKHLFDESLRAFSSGCVRVEHADQFAQVLLEAQGK----TLE 491 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +V R + L +PVH +Y +AW D FR D+Y D Sbjct: 492 DVATDRPNKAIALKQRIPVHIIYQTAWM-SDGKAHFRGDVYQYD 534 >gi|312883636|ref|ZP_07743361.1| hypothetical protein VIBC2010_12494 [Vibrio caribbenthicus ATCC BAA-2122] gi|309368859|gb|EFP96386.1| hypothetical protein VIBC2010_12494 [Vibrio caribbenthicus ATCC BAA-2122] Length = 517 Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 90/314 (28%), Positives = 171/314 (54%), Gaps = 12/314 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 L N ++ ++RL ++ D+ + +DA +E A+K FQ HG++ G++ T++ Sbjct: 205 LENRAILLRRLE---MVGIDIHRVRKDVTWYDASLEDAIKQFQSLHGIEVDGVIGPVTIK 261 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 +N+ V+ R+ L +N RI+ +Q+ L ++VN+P+ L+ G+ S V+VGR Sbjct: 262 WLNLSVNKRLSILAINAERIRYWPDQREQL--IVVNVPSFHLKYWRLGETVFESKVVVGR 319 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 R TP++ ++++ ++ NP W +P I+ +D++ +++D YL +NI ++ + G F+ Sbjct: 320 RGRPTPVMTTKLHSLILNPTWNVPWRIMVEDIIPKVKKDKNYLVRHNIKIVPKWGASDFI 379 Query: 284 --EEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 E +DW+ +P F ++ Q G NA+ K +R Y+HDTP LF+ R Sbjct: 380 NPESIDWDRLKPSRFPYQMTQMSGDKNALGLFKFNTPNRRAIYLHDTPVKSLFDETQRAF 439 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 +SGC+R+ + LL+ E + + ++ P+K + +PVH +Y +AW Sbjct: 440 SSGCIRIEHADLFADLLLESEGLVIEEEDNEPLGSNQSIPLK--SRIPVHIIYQTAWYEG 497 Query: 400 DSIIQFRDDIYGLD 413 + + +R+DIY +D Sbjct: 498 GN-VHYREDIYRMD 510 >gi|251792219|ref|YP_003006940.1| periplasmic protein [Aggregatibacter aphrophilus NJ8700] gi|247533607|gb|ACS96853.1| periplasmic protein [Aggregatibacter aphrophilus NJ8700] Length = 506 Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 84/241 (34%), Positives = 131/241 (54%), Gaps = 7/241 (2%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ L + G + VNIP+ L +G+ L S VIVG+ +R+TP++ SR Sbjct: 253 RLAINAQRLRILPTFQNG---IFVNIPSYQLTYYRDGEAVLNSRVIVGKTERKTPVMFSR 309 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 ++ ++ NP W P +I +D++ +R+DP Y+ N +ID G + +DW + Sbjct: 310 LSNVVVNPSWNAPTRLINEDIIPKVRKDPSYIYRNGYTIIDGNGNTIDPYTIDWENMTAK 369 Query: 295 NFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 F + RQ P +A+ + K S + Y+HDTP+ LF N R +SGCVRV L Sbjct: 370 KFPYRLRQAPSDNSALGNYKFNMPSSDAIYLHDTPKRSLFGNKKRDLSSGCVRVEKSDQL 429 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LLK+ WS + V+K+RKTT + ++ PV Y++AW KD + DIYG Sbjct: 430 ATILLKEA-GWSDERKQNVLKSRKTTSASIKSDNPVFLYYVTAWVDKDQVHTL-PDIYGY 487 Query: 413 D 413 D Sbjct: 488 D 488 >gi|328474745|gb|EGF45550.1| putative amidase [Vibrio parahaemolyticus 10329] Length = 513 Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 96/318 (30%), Positives = 157/318 (49%), Gaps = 8/318 (2%) Query: 102 LHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ + L ER+ I G D+ +D +E AVK FQ HGL+ G++ + Sbjct: 197 LRIGDPIENKSTLVERMAIVGVDVSYIDSEIPQYDENLELAVKEFQRIHGLNQDGVIGPN 256 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T+ +N R+ L +N R + +++ + V VN+P + +G+ S V+ Sbjct: 257 TIRWINFSPQQRLHLLALNAERSRIWAKERDNV--VFVNVPGYEVTYWHDGQPLFESKVV 314 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VGR R+TPI+ ++ ++ NP W +P I+ KD++ ++++P YL ++NI +I Sbjct: 315 VGRASRKTPIMTGTLDSVILNPTWNVPWKIMVKDIIPKVKRNPMYLMEHNIQIIRSWTSR 374 Query: 281 VFVE--EVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 ++ ++W + P F + RQ G NA+ K + Y+HDTP LF Sbjct: 375 EIIDPTTINWATVNPRTFPYRMRQASGSHNALGLYKFNMPNPQAIYLHDTPSKNLFQQDR 434 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGCVRV N L L K R + TT V L +PVH +Y +AW Sbjct: 435 RAFSSGCVRVENADQLAELLFKTQGLEERLEKKRESARSSTTSVPLGERIPVHIIYQTAW 494 Query: 397 SPKDSIIQFRDDIYGLDN 414 ++ + +RDDIY D+ Sbjct: 495 L-EEGTLYYRDDIYKYDH 511 >gi|294141900|ref|YP_003557878.1| hypothetical protein SVI_3129 [Shewanella violacea DSS12] gi|293328369|dbj|BAJ03100.1| conserved hypothetical protein [Shewanella violacea DSS12] Length = 615 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 154/290 (53%), Gaps = 6/290 (2%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + Q + A+ Y+ + +P + + L G+ + ++ + +RLI L P +S Sbjct: 202 DAYTQLKSALKKYRLLADTADFPNIKYQGLIKAGSVTPTLALIADRLIQLNYLSPQADIS 261 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 +V AV+ +Q H L G++ T+ ++NVP R Q+++N+ R + L + Sbjct: 262 NYSHEFV-GAVRAYQSSHSLQADGIIGKGTINSLNVPFAYRADQIRINMER-ARWLSSDL 319 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 Y+++N+ L ++G++ ++ +++G++ +TPI SRI+ ++ NP W +PRS I Sbjct: 320 SQEYIIINLAGYELWMYKDGQLDWQTDIVIGKISSKTPIFKSRISYLVVNPTWTVPRS-I 378 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF--IFRQDPGKINAMA 309 ++ +++DP Y+ + + D GK+V + +DW +P F F Q P K NA+ Sbjct: 379 NPGLINKIKRDPSYIDKQHYMLKDSSGKKVDILAIDWQEVDPEKFKYWFVQKPWKNNALG 438 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 K F +R+ Y+HDTP LF+ R + GC+R++N ++L LL + Sbjct: 439 QVKFIFPNRDAIYLHDTPTKYLFSLTDRAFSHGCIRIKNPLELAEKLLNE 488 >gi|83593271|ref|YP_427023.1| ErfK/YbiS/YcfS/YnhG [Rhodospirillum rubrum ATCC 11170] gi|83576185|gb|ABC22736.1| ErfK/YbiS/YcfS/YnhG [Rhodospirillum rubrum ATCC 11170] Length = 599 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 108/353 (30%), Positives = 165/353 (46%), Gaps = 34/353 (9%) Query: 85 YQDILSRGGWPE-----LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA------ 133 YQ + GGWP I+P G+ + +R RL G + S + Sbjct: 238 YQALARDGGWPTDLADGASIKP---GDRDPRLPEMRRRLAAEGLVVGSDPTFIGPPDAEL 294 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 D ++ AV++FQ HGL G++ TL MN RI Q++V L R + LL + +G Sbjct: 295 LDDFLVEAVRIFQAAHGLSADGVIGRGTLVDMNTTPAQRITQIRVALERWR-LLPRALGQ 353 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++LVN+P L E L V VGR D +TP+ + + FNPYW +P SI Q Sbjct: 354 THLLVNVPQYQLYLNEGRTTVLSMRVAVGRQDFETPLFSDTLRYMEFNPYWNVPISIAQA 413 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKE-----VFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +++ ++ YL ++ +G E V E VDW + ++ RQDPG N + Sbjct: 414 EVIPKQIENSAYLAKKGFTVL-PRGVEGWDDGVGHESVDWKADAARSYRLRQDPGPANPL 472 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 + K F + Y+HDT +F+ R + GCVRV+ L ++L+ R+ Sbjct: 473 GTVKFMFPNEYAVYLHDTNSRGVFDRSARAVSHGCVRVQEPALLANYILE------RF-T 525 Query: 369 EEVVKT----RKTTP--VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + + KT TP V+L +P+H VYI+AW + + F DIY D Sbjct: 526 DRIGKTAADFSGPTPKVVRLNRPLPIHLVYITAWGGEGGKVAFVRDIYAKDRA 578 >gi|327483956|gb|AEA78363.1| L,D-transpeptidase YcbB [Vibrio cholerae LMA3894-4] Length = 536 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 153/290 (52%), Gaps = 15/290 (5%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D +E +K FQ HGL G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 233 YDTSLEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSM 292 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ + G+ + V+VG+ R TP+++++++ ++ NP W +P I+ + Sbjct: 293 --IVVNVPGFDMKYWDAGREVFEAKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVE 350 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL ++ + +I ++ +DW + +P F + RQ G NA+ Sbjct: 351 DILPMVKRDSEYLANHRMEIIRGWSDPEVIDPALIDWETVDPETFPYRLRQLAGVQNALG 410 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSRYHI 368 + K + Y+HDTP LFNN R +SGC+RV N LL + T + + Sbjct: 411 TYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPV 470 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 T + L +PVH +Y + W ++ ++ +RDDIY D + +G Sbjct: 471 -------STQAIALKKRIPVHIIYQTVWY-EEGVLHYRDDIYHYDALALG 512 >gi|209549608|ref|YP_002281525.1| peptidoglycan-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535364|gb|ACI55299.1| Peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 636 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/280 (32%), Positives = 139/280 (49%), Gaps = 15/280 (5%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ--VNLMRIKKLLEQKMGLRYVL 197 S V+ FQ GL G++ +T+ AM D ++ V M + L + +G RYV+ Sbjct: 350 SLVEAFQQERGLKADGVIGQATVRAM-TGGDTNASKIDKLVVAMEQARWLPEDLGSRYVM 408 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 +N PA + +GK L V+VG + QT I + FNP+W +P+SII +M+ Sbjct: 409 INQPAFMVYYHNDGKEQLSMRVVVGGKNNQTYFFDDEIETVEFNPFWGVPQSIIINEMLP 468 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 LR DP YL D + ++ G V VDW N RQ P NA+ KI F + Sbjct: 469 KLRSDPNYL-DQLGYEVEVNGHAVASSSVDWYG-STNNVSVRQPPSSDNALGELKILFPN 526 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK---T 374 + YMHDTP F +R + GCVR+ N + +L T +++V K T Sbjct: 527 SHAIYMHDTPSKSFFKRDMRALSHGCVRLANPRAMAAAVLGTT-------VDDVAKQIAT 579 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + VK+ ++PV+ Y +AW KD ++++ DD+YG D Sbjct: 580 GQNHAVKVPQKIPVYVSYFTAWPNKDGVVEYFDDVYGRDG 619 >gi|258624450|ref|ZP_05719397.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258583297|gb|EEW08099.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 522 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/296 (29%), Positives = 154/296 (52%), Gaps = 27/296 (9%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + +K FQ HGL P G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 232 YDQTLVKPIKQFQSMHGLKPDGVIGPETMKWLNKSVTERLALLALNAERIRLWSTQQGTV 291 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ + G+ + V+VGRV R TP+++++++ ++ NP W +PR I+ + Sbjct: 292 --IVVNVPGFEMKYWDAGREVFGAKVVVGRVTRPTPVMNTKLDSLIINPTWNVPRKIMVE 349 Query: 254 DMMALLRQDPQYLKDNNIHMIDE-KGKEVFVEE-VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL + I +I EV + +DW+S P F + RQ G NA+ Sbjct: 350 DILPMVKRDSEYLARHQIEIIRSWSDPEVLDPQLIDWSSINPETFPYRMRQQAGVQNALG 409 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN-------IIDLDVWLLKDTPT 362 K + Y+HDTP LFNNV R +SGC+RV N +++ +L + P Sbjct: 410 MYKFNTPNSRAIYLHDTPSKHLFNNVSRAFSSGCIRVENAQKFAQTLLEQQGIVLNELPA 469 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 + T + L +PV +Y + W + +Q+RDDIY D+ + Sbjct: 470 Y-------------TQAIALKKRIPVQIIYQTVWY-EGGALQYRDDIYRYDSSSIS 511 >gi|262171698|ref|ZP_06039376.1| hypothetical protein VII_002521 [Vibrio mimicus MB-451] gi|261892774|gb|EEY38760.1| hypothetical protein VII_002521 [Vibrio mimicus MB-451] Length = 522 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/296 (29%), Positives = 155/296 (52%), Gaps = 27/296 (9%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + +K FQ HGL P G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 232 YDQTLVKPIKQFQNMHGLKPDGVIGPETMKWLNKSVTERLALLALNAERIRLWSTQQGTV 291 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ ++G+ + V+VGRV R TP+++++++ ++ NP W +PR I+ + Sbjct: 292 --IVVNVPGFEMKYWDSGREVFGAKVVVGRVTRPTPVMNTKLDSLIINPTWNVPRKIMVE 349 Query: 254 DMMALLRQDPQYLKDNNIHMIDE-KGKEVFVEE-VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL + I +I EV + +DW+S P F + RQ G NA+ Sbjct: 350 DILPMVKRDSEYLARHQIEIIRSWSDPEVLDPQLIDWSSINPETFPYRMRQQAGVQNALG 409 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN-------IIDLDVWLLKDTPT 362 K + Y+HDTP LFNNV R +SGC+RV N +++ +L + P Sbjct: 410 MYKFNTPNSRAIYLHDTPSKHLFNNVSRAFSSGCIRVENAQKFAQTLLEQQGIVLNELPA 469 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 + T + L +PV +Y + W + +Q+RDDIY D+ + Sbjct: 470 Y-------------TQAIALKKRIPVQIIYQTVWY-EGGALQYRDDIYRYDSSSIS 511 >gi|239995151|ref|ZP_04715675.1| peptidoglycan binding domain-containing protein [Alteromonas macleodii ATCC 27126] Length = 481 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/270 (34%), Positives = 140/270 (51%), Gaps = 13/270 (4%) Query: 96 ELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 ++P+ P L L ++S V L+ RL+ G S FD + AVK FQM G++P Sbjct: 207 QIPVGPTLKLNSTSERVVLLKSRLLGPGTY------SELFDKDLLDAVKQFQMSAGIEPD 260 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G+V SSTLEA+N + ++ NL R + L Q Y+ VNI + L G+ Sbjct: 261 GIVGSSTLEALNATTFSWLERIDANLERWRWLPHQTWS-TYLRVNIASFQLRGFTEGEET 319 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 L VIVG RQTP+ + ++FNPYW +P SI KD +A L+ +P L + + Sbjct: 320 LGMPVIVGTPVRQTPVFAESMKYMVFNPYWTVPFSIATKDKLAKLKTNPSLLVEQG-YEA 378 Query: 275 DEKGKEVF--VEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 G F V++ DW + F + RQ PG NA+ K +++ Y+HDTP+ Sbjct: 379 QPAGVSGFSPVDKFDWTNVSRGTFHYTLRQKPGPHNALGKVKFMLPNKHAIYLHDTPDHS 438 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 LF+ + R +SGC+RV N + L W+L + Sbjct: 439 LFSKLERNFSSGCIRVSNPLKLSQWVLTHS 468 >gi|152995955|ref|YP_001340790.1| peptidoglycan-binding domain-containing protein [Marinomonas sp. MWYL1] gi|150836879|gb|ABR70855.1| Peptidoglycan-binding domain 1 protein [Marinomonas sp. MWYL1] Length = 556 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 99/347 (28%), Positives = 173/347 (49%), Gaps = 20/347 (5%) Query: 79 EKAIAFYQDILSRGGWPELPIR-----PLHLGNSSVSVQRLRERLIISGDLDPS--KGLS 131 +K + +YQD+ ++ E I PL G+ V +LR RL+ GD+ S K Sbjct: 200 QKWLVYYQDLAAK----EKDIFVSAGVPLSAGDEGPRVAQLRARLVQLGDIRFSTRKVNE 255 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 FD ++ A+ FQ RH + G S T++ +NVP+ R +Q+ NL R + L ++ Sbjct: 256 EQFDIRLKEALIRFQQRHHITADGAAGSKTIQMLNVPLKTRAKQIAYNLERWR-WLPSEL 314 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 + V++ +++ NG++ VI G+ DR+TP+ + ++ NP W +P I Sbjct: 315 EANRIWVDLTNYTVDMYLNGELTSMKAVI-GKPDRKTPVFKGLMTYMVTNPTWRVPHRIA 373 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDE---KGKEVFVEEVDWNSPEPPNFIFR--QDPGKIN 306 +++++ L+ DP YL + + KE+ +++W + FR Q P + N Sbjct: 374 RENLLPKLQADPNYLVKHGYKVYSSWSIGAKELDSTKINWKAINEDKLAFRFEQKPDEGN 433 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 A+ K F ++N Y+HDTP LF R +SGCVR+ N + + K + ++ Sbjct: 434 ALGQFKFMFPNKNEIYLHDTPAKHLFREEDRAFSSGCVRLENPTEFAKEITKGSKQFN-- 491 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + +KT T + L T +PV+ VY + + +++FR+DIY D Sbjct: 492 DMNNSLKTGSNTVITLPTYIPVYLVYFTVVPNANGMLEFRNDIYERD 538 >gi|90410380|ref|ZP_01218396.1| hypothetical amidase [Photobacterium profundum 3TCK] gi|90328621|gb|EAS44905.1| hypothetical amidase [Photobacterium profundum 3TCK] Length = 578 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/284 (30%), Positives = 148/284 (52%), Gaps = 5/284 (1%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 A+K FQ RHGL G++ ++T + +P R++ +N+ R + + ++ VNI Sbjct: 284 AIKRFQRRHGLADDGLIGAATTAQLVMPYTDIARRIALNMQRFRNI-NMIDNQPHIWVNI 342 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P L+ + G V S VIVGR R T + S IN ++ NP W +P +I +KD++ ++ Sbjct: 343 PDYMLKIFDQGNVIFESKVIVGRTSRPTNLFSSAINTMVVNPTWNVPETIKRKDVIPKVK 402 Query: 261 QDPQYLKDNNIHMIDE--KGKEVFVEEVDWNSPEPPNF--IFRQDPGKINAMASTKIEFY 316 YL +N+ +++ E+ +++DW++ P F F+Q PG N++ K Sbjct: 403 HSRDYLTAHNMRILNSWRDRTEIPADQIDWSNVNPKTFPHEFQQGPGPSNSLGRVKFLMP 462 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 + + Y+HDTP LFN R +SGCVRV DL +++ + ++ Sbjct: 463 NDYSIYLHDTPARGLFNKSKRNLSSGCVRVEKAYDLANFIIDFQKRKNIEPFNAMLNDGD 522 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 V+L+ + V FVY++AW + + +Q R+DIYG D+ +I Sbjct: 523 LDTVRLSQRLGVDFVYLTAWVDEKNTLQMREDIYGYDSQQKDVI 566 >gi|258620190|ref|ZP_05715229.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258587548|gb|EEW12258.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 522 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/296 (29%), Positives = 154/296 (52%), Gaps = 27/296 (9%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + +K FQ HGL P G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 232 YDQTLVKPIKQFQNMHGLKPDGVIGPETMKWLNKSVTERLALLALNAERIRLWSTQQGTV 291 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ + G+ + V+VGRV R TP+++++++ ++ NP W +PR I+ + Sbjct: 292 --IVVNVPGFEMKYWDAGREVFGAKVVVGRVTRPTPVMNTKLDSLIINPTWNVPRKIMVE 349 Query: 254 DMMALLRQDPQYLKDNNIHMIDE-KGKEVFVEE-VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL + I +I EV + +DW+S P F + RQ G NA+ Sbjct: 350 DILPMVKRDSEYLARHQIEIIRSWSDPEVLDPQLIDWSSINPETFPYRMRQQAGVQNALG 409 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN-------IIDLDVWLLKDTPT 362 K + Y+HDTP LFNNV R +SGC+RV N +++ +L + P Sbjct: 410 MYKFNTPNSRAIYLHDTPSKHLFNNVSRAFSSGCIRVENAQKFAQTLLEQQGIVLNELPA 469 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 + T + L +PV +Y + W + +Q+RDDIY D+ + Sbjct: 470 Y-------------TQAIALKKRIPVQIIYQTVWY-EGGALQYRDDIYRYDSSSIS 511 >gi|262165524|ref|ZP_06033261.1| hypothetical protein VMA_001971 [Vibrio mimicus VM223] gi|262025240|gb|EEY43908.1| hypothetical protein VMA_001971 [Vibrio mimicus VM223] Length = 522 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 87/296 (29%), Positives = 154/296 (52%), Gaps = 27/296 (9%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + +K FQ HGL P G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 232 YDQTLVKPIKQFQNMHGLKPDGVIGPETMKWLNKSVTERLALLALNAERIRLWSTQQGTV 291 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ + G+ + V+VGRV R TP+++++++ ++ NP W +PR I+ + Sbjct: 292 --IVVNVPGFEMKYWDAGREVFGAKVVVGRVTRPTPVMNTKLDSLIINPTWNVPRKIMVE 349 Query: 254 DMMALLRQDPQYLKDNNIHMIDE-KGKEVFVEE-VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL + I +I EV + +DW+S P F + RQ G NA+ Sbjct: 350 DILPMVKRDSEYLARHQIEIIRSWSDPEVLDPQLIDWSSINPETFPYRMRQQAGVQNALG 409 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN-------IIDLDVWLLKDTPT 362 K + Y+HDTP LFNNV R +SGC+RV N +++ +L + P Sbjct: 410 MYKFNTPNSRAIYLHDTPSKHLFNNVSRAFSSGCIRVENAQKFAQTLLEQQGIVLNELPA 469 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 + T + L +PV +Y + W + +Q+RDDIY D+ + Sbjct: 470 Y-------------TQAIALKKRIPVQIIYQTVWY-EGGALQYRDDIYRYDSSSIS 511 >gi|255530583|ref|YP_003090955.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter heparinus DSM 2366] gi|255343567|gb|ACU02893.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter heparinus DSM 2366] Length = 471 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 130/241 (53%), Gaps = 3/241 (1%) Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 L++NL R++ + GL+YV VNI SL+ ++ GK+ LR V VG RQTP L S I Sbjct: 226 LKLNLERLR-WKNRPPGLKYVRVNIADFSLDVIDKGKLVLRMKVCVGEAARQTPQLSSMI 284 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF-VEEVDWNSPEPP 294 + NP W IP SI + +++ +D YL +N+I++ + GK V+ +E +DW EP Sbjct: 285 YSVQVNPVWNIPESIARNEIIKYASRDKYYLANNSINVF-KNGKRVWDLEAIDWGKAEPG 343 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 ++ F+Q PG N++ K F + ++ Y+HDTP FN R + GCVRV ++L Sbjct: 344 SYSFKQRPGMKNSLGKIKFLFKNESSVYLHDTPVKSAFNQKNRAISHGCVRVEKPLELAF 403 Query: 355 WLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 L P + + + + L T +P+ Y +A + + + F DIYGLD+ Sbjct: 404 VLFGKGPKYDQVKNAMQSGYPREKYIGLPTAIPISIAYYTALADQQGKVIFNKDIYGLDD 463 Query: 415 V 415 + Sbjct: 464 M 464 >gi|227329504|ref|ZP_03833528.1| hypothetical protein PcarcW_20031 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 579 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 89/281 (31%), Positives = 146/281 (51%), Gaps = 10/281 (3%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVN 199 AVK FQ GL+ G++ T + +NV +R L +N+ R++ L + G ++VN Sbjct: 287 AVKRFQHWQGLEDDGVIGKRTRDWLNVSPQMRATLLALNIQRLRLLPDNVHTG---IMVN 343 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IP SL ++G L S VIVG+ R+TP++ S + ++ NP W +P ++ ++D++ + Sbjct: 344 IPNYSLIYYQDGAERLSSRVIVGQPKRKTPLMSSSLYNVVVNPPWNVPTTLTRQDIIPKV 403 Query: 260 RQDPQYLKDNNIHMI---DEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMASTKIE 314 +DP YL+ + ++ + + + +DW S E + RQ PG N++ K Sbjct: 404 VRDPGYLQRHGYTVLSGWSQDAEAIDPSMIDWQMVSAERFPYRLRQAPGANNSLGRYKFN 463 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 + Y+HDTP LF +R +SGCVRV +L LL+D W+ I + Sbjct: 464 MPNSEAIYLHDTPNHNLFQRDIRALSSGCVRVNKASELASMLLQDA-GWNNSRISSTLDQ 522 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 TT V + +PV+ Y++AW +D QFR DIY D+ Sbjct: 523 GNTTFVSMKHRIPVNLYYLTAWVAEDGRPQFRTDIYNYDDT 563 >gi|261868418|ref|YP_003256340.1| periplasmic protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413750|gb|ACX83121.1| periplasmic protein [Aggregatibacter actinomycetemcomitans D11S-1] Length = 502 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/243 (34%), Positives = 133/243 (54%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + +L +N R++ L E G + VNIP+ L +GK+ L S VIVG R+TP++ Sbjct: 246 LHRLAINAQRLRILPEFDNG---IFVNIPSYQLNYYRDGKLVLNSRVIVGTDKRKTPVMF 302 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 SR++ ++ NP W P +I +D++ +R+DP Y+ N +ID KG + +DW + Sbjct: 303 SRLSNVVVNPPWNAPTRLINEDIIPKVRRDPSYIYRNGYTIIDGKGNTIDPYTIDWENMT 362 Query: 293 PPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 F + RQ P +A+ + K S + Y+HDTP+ LF N R +SGCVRV Sbjct: 363 AKKFPYRLRQVPSDNSALGNYKFNMPSSDAIYLHDTPKRSLFGNKRRDLSSGCVRVEKSE 422 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 +L LLK+ W+ + V+K+RKTT V + + PV Y++AW K+ + D+Y Sbjct: 423 ELATVLLKEA-GWTAERKQSVLKSRKTTSVTVKSNNPVFLYYVTAWVDKEQVHTL-PDVY 480 Query: 411 GLD 413 G D Sbjct: 481 GYD 483 >gi|218678646|ref|ZP_03526543.1| hypothetical protein RetlC8_07084 [Rhizobium etli CIAT 894] Length = 396 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 94/288 (32%), Positives = 142/288 (49%), Gaps = 15/288 (5%) Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD--LRIRQLQVNLMRIKKLLE 188 S + + S V+ FQ GL G++ +T+ AM +I +L V M + L Sbjct: 101 SADYSPEIVSLVEDFQKERGLKADGVIGQATVRAMTGGDSNASKIDKLDV-AMEQARWLP 159 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + +G RYV++N PA +GK L V+VG + QT I + FNP+W +P+ Sbjct: 160 EDLGSRYVMINQPAFMAYYHNDGKEQLSMRVVVGGKNNQTYFFDDEIETVEFNPFWGVPQ 219 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SII +M+ LR DP YL D + ++ G V VDW N RQ P NA+ Sbjct: 220 SIIINEMLPKLRSDPNYL-DQLGYEVEVNGHAVASSSVDWYG-STDNVSVRQPPSSDNAL 277 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 KI F + + YMHDTP F +R + GCVR+ N + +L T + Sbjct: 278 GELKILFPNSHAIYMHDTPSKSFFKRDMRALSHGCVRLSNPRAMAAAVLGTT-------V 330 Query: 369 EEVVK---TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 ++V K T + VK+ ++PV+ Y +AW KD ++++ DD+YG D Sbjct: 331 DDVAKQIATGQNHAVKVPQKIPVYVSYFTAWPNKDGVVEYFDDVYGRD 378 >gi|227111943|ref|ZP_03825599.1| hypothetical protein PcarbP_03208 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 578 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 100/347 (28%), Positives = 170/347 (48%), Gaps = 18/347 (5%) Query: 77 QTEKAIAFYQDILSRGGW--PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 Q + +A ++IL R G I + ++ +V + L+ G +D + Sbjct: 226 QQSRELAVLREILQRTGMLSSTESITLFNENTAATTVSTGQAPLVEGGAIDDR------Y 279 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ-KMGL 193 + AVK FQ GL+ G++ T + +NV +R L +N+ R++ L + G Sbjct: 280 TGELVDAVKRFQHWQGLEDDGVIGKRTRDWLNVSPQMRATLLALNIQRLRLLPDNVHTG- 338 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VNIP SL ++G L S VIVG+ R+TP++ S + ++ NP W +P ++ ++ Sbjct: 339 --IMVNIPNYSLIYYQDGAERLSSRVIVGQPKRKTPLMSSSLYNVVVNPPWNVPTTLTRQ 396 Query: 254 DMMALLRQDPQYLKDNNIHMI---DEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAM 308 D++ + +DP YL+ + ++ + + + +DW S E + RQ PG N++ Sbjct: 397 DIIPKVVRDPGYLQRHGYTVLSGWSQDAEAIDPSMIDWPMVSAERFPYRLRQAPGANNSL 456 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K + Y+HDTP LF +R +SGCVRV +L LL+D W+ I Sbjct: 457 GRYKFNMPNSEAIYLHDTPNHNLFQRDIRALSSGCVRVNKASELASMLLQDA-GWNNSRI 515 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + TT V + +PV+ Y++AW +D QFR DIY D+ Sbjct: 516 SSTLDQGNTTFVSMKHRIPVNLYYLTAWVAEDGRPQFRTDIYNYDDT 562 >gi|332826880|gb|EGJ99680.1| hypothetical protein HMPREF9455_03943 [Dysgonomonas gadei ATCC BAA-286] Length = 593 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 138/257 (53%), Gaps = 9/257 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 LG+ S ++ + RL+++G+ P S L + D + +A+ F+ R+ V Sbjct: 237 LGDKSKHIKDIAGRLMLTGEYKPDSISSDSLHIKLDEELLAAINTFRRRNSYPEEAEVGK 296 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA--VENGKVGLRS 217 T+ A+N P + + +++ N+ R + + +++ VN+ AA L A +N + L S Sbjct: 297 LTISALNRPFEYYLAKIRANMERYRWKRAKAKHYKHIEVNVAAAMLVANNTKNDSLPLIS 356 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V VG V +TP+L S I+ + NP W +P SI QK++ L ++DP Y+K +N+ + + Sbjct: 357 RVCVGSVRNKTPLLQSDISYMNLNPIWNVPASIAQKEVAVLQKKDPTYIKRHNMKLY-KG 415 Query: 278 GKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 GKEV V +DW P F + +QDPG N++ K F + + Y+HDTP + FN Sbjct: 416 GKEVDVSSIDWEDVNPSKFSYTIKQDPGGGNSLGLVKFMFNNAFSVYLHDTPSKLAFNRK 475 Query: 336 VRFETSGCVRVRNIIDL 352 R + GCVRV+ DL Sbjct: 476 NRAVSHGCVRVQKPFDL 492 >gi|262402380|ref|ZP_06078941.1| hypothetical protein VOA_000347 [Vibrio sp. RC586] gi|262351162|gb|EEZ00295.1| hypothetical protein VOA_000347 [Vibrio sp. RC586] Length = 522 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 151/285 (52%), Gaps = 13/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + + +K FQ HGL P G+V T++ +N + R+ L +N R++ L Sbjct: 232 YDQALVNPIKQFQSMHGLKPDGVVGPETMKWLNKSMAERVSLLALNAERLR--LWPAPQD 289 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P +++ + G+ + V+VGRV R TP+++++++ ++ NP W +PR I+ + Sbjct: 290 TAIVVNVPGFAMKYWDAGQEVFEAKVVVGRVTRPTPVMNTKLDSLIINPTWNVPRKIMVE 349 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL + + +I V+ +DW S +P F + RQ G NA+ Sbjct: 350 DILPMVKRDHEYLAKHQMEIIRGWNDPEVVDPQLIDWASVDPETFPYRMRQQAGVQNALG 409 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K + Y+HDTP LFNN R +SGC+RV N LL+ + Sbjct: 410 MYKFNTPNSRAIYLHDTPSKHLFNNAARAFSSGCIRVENAQKFAQTLLEQ----QGIVLN 465 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 E+ + KT + L +PVH +Y + W + +Q+RDDIY D Sbjct: 466 ELPEKTKT--IALKKRIPVHIIYQTVWY-EGGKLQYRDDIYRYDT 507 >gi|15888928|ref|NP_354609.1| hypothetical protein Atu1615 [Agrobacterium tumefaciens str. C58] gi|15156702|gb|AAK87394.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 642 Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 90/274 (32%), Positives = 137/274 (50%), Gaps = 8/274 (2%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 VK FQ +GL P G++ +T+ AM D +I ++QV + +++ L +G RYV +N Sbjct: 359 VKAFQSENGLKPDGVIGRATVRAMVGESNDAKIAKVQVAMEQVR-WLPADLGQRYVFINQ 417 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PA +G V+VG QT I + FNPYW +P+SII +M+ LR Sbjct: 418 PAFMAYYHNDGVEQFGMKVVVGSKANQTYFFQDEIQTVEFNPYWGVPQSIIVNEMLPKLR 477 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 +DP YL D + + G+ V V+W + RQ P NA+ KI F + + Sbjct: 478 RDPSYL-DRLGYEVQVGGRAVSSSSVNWYGSTNAVSV-RQPPSSDNALGDLKILFPNAHA 535 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP FN +R + GC+R+ + + +L S + E + K V Sbjct: 536 IYMHDTPAKSFFNRDMRALSHGCIRLVDPRRMAAAVLGS----SVDKVNEQIAAGKNRAV 591 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 ++ +VPV+ Y +AW KD +QF DD+Y D+ Sbjct: 592 QVPEKVPVYVAYFTAWPDKDGKVQFFDDVYDRDS 625 >gi|254437318|ref|ZP_05050812.1| Putative peptidoglycan binding domain protein [Octadecabacter antarcticus 307] gi|198252764|gb|EDY77078.1| Putative peptidoglycan binding domain protein [Octadecabacter antarcticus 307] Length = 541 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 98/334 (29%), Positives = 170/334 (50%), Gaps = 10/334 (2%) Query: 86 QDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + +L+ GGW P + L G S V LR+RL+ G ++ S + +D +++AV+ Sbjct: 195 ERLLANGGWGPSVSSSSLAAGASGAGVVALRDRLVAMGHMERSA--TQTYDVTIQAAVQR 252 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL G ++TL +NVP R++Q+ V + R ++ + + G R+V VN+ S Sbjct: 253 FQQAHGLTADGDAGAATLAEINVPAASRLQQIIVAMER-ERWMNRPRGERHVWVNLVDFS 311 Query: 205 LEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 ++N V ++ ++G RQTP ++ ++ NP W +PRSII + + +++ Sbjct: 312 AAIMDNDSVTFQTRSVIGATGSGRQTPEFSDVMDHMVINPSWFVPRSIIVGEYLPAMQRS 371 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 + ++I + D G+ V V++++ F F RQ P NA+ K F ++ N Sbjct: 372 RDAI--SHILLTDGNGRTVNRGNVNFSNYTARTFPFSMRQPPSSRNALGLVKFMFPNQYN 429 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP LF +R + GC+R+ + + LL + + ++ + T V Sbjct: 430 IYLHDTPAKSLFAREIRAYSHGCIRLNDPFEFGHALLAAQEADPEGYFQRILNSGTETRV 489 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 L VPVH VY +A++ + FR DIY D+ Sbjct: 490 NLVDPVPVHIVYRTAFTHTTGQLNFRRDIYDRDS 523 >gi|293392039|ref|ZP_06636373.1| periplasmic protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952573|gb|EFE02692.1| periplasmic protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 502 Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 85/241 (35%), Positives = 132/241 (54%), Gaps = 7/241 (2%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ L E G + VNIP+ L +GK+ L S VIVG R+TP++ SR Sbjct: 248 RLAINAQRLRILPEFANG---IFVNIPSYQLNYYRDGKLVLNSRVIVGTDKRKTPVMFSR 304 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 ++ ++ NP W P +I +D++ +R+DP Y+ N +ID KG + +DW + Sbjct: 305 LSNVVVNPPWNAPTRLINEDIIPKVRRDPSYIYRNGYTIIDGKGNTIDPYTIDWENMTAK 364 Query: 295 NFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 F + RQ P +A+ + K S + Y+HDTP+ LF N R +SGCVRV +L Sbjct: 365 KFPYRLRQVPSDNSALGNYKFNMPSSDAIYLHDTPKRSLFGNKRRDLSSGCVRVEKSEEL 424 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LLK+ W+ + V+K+RKTT V + + PV Y++AW K+ + D+YG Sbjct: 425 ATVLLKEA-GWTAERKQSVLKSRKTTSVTVKSNNPVFLYYVTAWVDKEQVHTL-PDVYGY 482 Query: 413 D 413 D Sbjct: 483 D 483 >gi|116252447|ref|YP_768285.1| hypothetical protein RL2700 [Rhizobium leguminosarum bv. viciae 3841] gi|115257095|emb|CAK08189.1| conserved hypothetical exported protein [Rhizobium leguminosarum bv. viciae 3841] Length = 637 Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 90/286 (31%), Positives = 142/286 (49%), Gaps = 9/286 (3%) Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ--VNLMRIKKLLE 188 S+ + + S V+ FQ GL P G++ +T+ AM D ++ V M + L Sbjct: 342 SIDYSPDIVSLVEDFQKERGLKPDGVIGQATVRAM-TGGDTNASKIDKLVVAMEQARWLP 400 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + +G RYV++N PA + +GK L V+VG + QT I + FNP+W +P+ Sbjct: 401 EDLGSRYVMINQPAYMVYYHNDGKEQLSMRVVVGGKNNQTYFFDDEIETVEFNPFWGVPQ 460 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SII +M+ LR DP YL D + ++ G V VDW N RQ P NA+ Sbjct: 461 SIIINEMLPKLRSDPNYL-DQLGYEVEVNGHAVASSSVDWYG-STNNVSVRQPPSSDNAL 518 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 KI F + + YMHDTP F +R + GCVR+ + + +L T I Sbjct: 519 GELKILFPNSHAIYMHDTPSKSFFKRDMRALSHGCVRLADPRAMAAAVLGTTVD----DI 574 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + + + V++ ++PV+ Y +AW KD ++++ DD+YG D Sbjct: 575 AKQIASGQNHAVRVPQKIPVYVSYFTAWPNKDGVVEYFDDVYGRDG 620 >gi|254420106|ref|ZP_05033830.1| Putative peptidoglycan binding domain protein [Brevundimonas sp. BAL3] gi|196186283|gb|EDX81259.1| Putative peptidoglycan binding domain protein [Brevundimonas sp. BAL3] Length = 520 Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 95/336 (28%), Positives = 158/336 (47%), Gaps = 31/336 (9%) Query: 85 YQDILSRGGWPELPIRPLHLGN-SSVSVQRLRERLIISGDLDPSKGL-----SVAFDAYV 138 Y+ + ++GGWP P P N S + L +RL GDL + G + + + + Sbjct: 182 YRRLAAQGGWPAFPAGPTIEPNMSDRRIPALIDRLTAEGDLTAANGARLKTEGLTYGSEL 241 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 + AV+ FQ+RHGL G + + T +++ + R RQ+ +NL R ++ L++ + + V Sbjct: 242 QQAVQGFQVRHGLGADGRIGTGTQRSLSASAEDRARQIALNLER-RRWLKRDVAPERIEV 300 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 N AA + ++GK + VIVG + QTP L ++ NP W +P SI +++ + Sbjct: 301 NTAAAIMVYWKDGKPVHSNRVIVGSAENQTPSLEKPFASVVANPPWYVPASIARRE---I 357 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR 318 L + P YL N++++ N Q G A+ K E Sbjct: 358 LPKGPAYLAANDMYV--------------------QNGTVIQRAGPKAALGYVKFELRDS 397 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 ++HDTP FN +R + GCVRV+N ++ LL P + TR+TT Sbjct: 398 YAIFLHDTPSKAAFNLSMRQRSHGCVRVQNAVEFARLLLSPDPV-KLAQFDTAQDTRETT 456 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 V E+ V +Y +A+ + FR+D+YG D+ Sbjct: 457 RVTTGREISVRLLYWTAFVDGQGRVAFREDVYGRDD 492 >gi|261821332|ref|YP_003259438.1| hypothetical protein Pecwa_2052 [Pectobacterium wasabiae WPP163] gi|261605345|gb|ACX87831.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium wasabiae WPP163] Length = 575 Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 93/306 (30%), Positives = 156/306 (50%), Gaps = 14/306 (4%) Query: 129 GLSVAFDAY---VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 G++ A D Y + AVK FQ GL+ G++ T + +NV +R L +N+ R++ Sbjct: 268 GVANADDRYSGDLVEAVKRFQHWQGLEGDGVIGKRTRDWLNVSPQMRATLLALNIQRLRL 327 Query: 186 LLEQ-KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + + G ++VNIP SL ++G L S VIVG+ R+TP++ S + ++ NP W Sbjct: 328 VPDNVHTG---IMVNIPNYSLIYYQDGAERLSSRVIVGQPKRKTPLMSSSLYNVVVNPPW 384 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMI---DEKGKEVFVEEVDWNSPEPPNFIF--R 299 +P ++ ++D++ + +DP YL+ + ++ + + + ++W F + R Sbjct: 385 NVPTTLTRQDIIPKVVRDPGYLQRHGYTVLSGWSQDAEAIDPSMIEWQGVSAERFPYRLR 444 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG N++ K + Y+HDTP LF +R +SGCVRV +L LL+D Sbjct: 445 QAPGANNSLGRYKFNMPNSEAIYLHDTPNHNLFQRDIRALSSGCVRVNKASELASMLLQD 504 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-VHVG 418 W+ I + TT V + +PV+ Y++AW +D QFR DIY D+ G Sbjct: 505 A-GWNNSRISSTLDQGNTTFVSMKHRIPVNLYYLTAWVAEDGRPQFRTDIYNYDDTARAG 563 Query: 419 IIPLPE 424 LP+ Sbjct: 564 TKVLPK 569 >gi|110633909|ref|YP_674117.1| hypothetical protein Meso_1556 [Mesorhizobium sp. BNC1] gi|110284893|gb|ABG62952.1| conserved hypothetical protein [Chelativorans sp. BNC1] Length = 661 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/278 (30%), Positives = 134/278 (48%), Gaps = 15/278 (5%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 +K Q +H L P G+V T+ A+ RI ++ +++ R++ +G V++N+ Sbjct: 348 IKAVQRQHKLSPDGIVGQRTVRALTGESASSRIEKVLLSMERLR-WQPSYLGSARVMINV 406 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P+ + ENG L +VG+ QT H I + FNPYW +PRSII +M+ LR Sbjct: 407 PSFTASYFENGTEKLSMRAVVGQSSSQTYFFHDEIEYVEFNPYWGVPRSIIVNEMLPKLR 466 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDW-----NSPEPPNFIFRQDPGKINAMASTKIEF 315 +DP YL + D +G+ V ++W N P + RQ PG NA+ KI F Sbjct: 467 RDPGYLDRAGYEVFDSRGRRVASSAINWAVYGANVP----YGVRQPPGASNALGRLKIMF 522 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 + ++ YMHDTP+ LF R + GCVR+ + + +L + I + R Sbjct: 523 PNSHDIYMHDTPQKSLFARDSRAFSHGCVRLEDPGAMAAAVLGISSEEVAAEINKGRNMR 582 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + P K +PV+ Y +AW I + DIY D Sbjct: 583 RNVPSK----IPVYVGYFTAWPETSGSISYHADIYERD 616 >gi|219872270|ref|YP_002476645.1| hypothetical protein HAPS_2267 [Haemophilus parasuis SH0165] gi|219692474|gb|ACL33697.1| conserved hypothetical protein [Haemophilus parasuis SH0165] Length = 516 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 144/286 (50%), Gaps = 17/286 (5%) Query: 137 YVESAVKLFQ------MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 Y E+ KLF+ + G + S ++N P QL +N R++ + Sbjct: 222 YQETVQKLFEISSNDALNQGGNKSAKSTKENKGSVNTP---SFTQLALNAQRLRLIPSFN 278 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 G + VNIP+ L GK+ L+S VIVGR DR+TP+++S+++ ++ NP+W +P +I Sbjct: 279 NG---IFVNIPSYQLYYFREGKLVLQSKVIVGRNDRKTPVMYSKLSNVVVNPHWNVPSTI 335 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN---FIFRQDPGKINA 307 KD++ LR+DP ++D KG + ++W + E N + RQ G +A Sbjct: 336 KNKDLVPKLRKDPILADKLGYEILDGKGNKFSAHSINWAAYEGKNNFPYHIRQKAGDDSA 395 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF+ R +SGCVRV +L LL + WS Sbjct: 396 LGRYKFNMPSSDAIYLHDTPNRGLFSKKNRALSSGCVRVAKADELATLLLAEA-GWSAQR 454 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 ++V+ ++KTT + ++ PV+ Y+++W I DIY D Sbjct: 455 KQDVLASKKTTSAPIRSDNPVYLYYVTSWIEGGKIYTL-PDIYQFD 499 >gi|166012265|ref|ZP_02233163.1| YcbB [Yersinia pestis biovar Antiqua str. E1979001] gi|165988829|gb|EDR41130.1| YcbB [Yersinia pestis biovar Antiqua str. E1979001] Length = 252 Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 118/223 (52%), Gaps = 6/223 (2%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 ++VNIP SL ++G L S VIVGR R+TP++ S +N ++ NP W +P S++++D+ Sbjct: 13 IMVNIPNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSLVRQDI 72 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF--RQDPGKINAMAS 310 + R D Y + N ++ + V +DW+ P NF + RQ PG N++ Sbjct: 73 VPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPYRLRQAPGANNSLGR 132 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K S + Y+HDTP LF +R +SGCVRV DL LL+D W+ + Sbjct: 133 FKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWNDARVSS 191 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 VK TT V + VPV Y++AW +D QFR DIY D Sbjct: 192 KVKQGDTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYD 234 >gi|89054636|ref|YP_510087.1| peptidoglycan binding domain-containing protein [Jannaschia sp. CCS1] gi|88864185|gb|ABD55062.1| Peptidoglycan-binding domain 1 [Jannaschia sp. CCS1] Length = 531 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/311 (28%), Positives = 158/311 (50%), Gaps = 13/311 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + +V +LR RL+ G LD + + +D ++ AV FQ+ +G++ G+ T+ A Sbjct: 209 GATGSAVVQLRNRLMAMGYLD--RSATATYDTRLQQAVMEFQVDNGINADGIAGGDTIRA 266 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 +N + ++ + + R ++ L G R++ VN+P +++G+V + ++G Sbjct: 267 VNRSATEHLSEVILAMER-QRWLNVDRGPRHIFVNLPDFHTRVIDDGEVTFITRSVIGSR 325 Query: 225 DR--QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 DR +TP + ++ NP W +PRSI + + +++ +L+ + G+ V Sbjct: 326 DRDRRTPEFSDEMEHMVINPSWYVPRSIARGYIPSIMAGGANHLQ------LMSNGRPVN 379 Query: 283 VEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 VDW+ NF F RQ PG NA+ K F ++ N Y+HD+P+ L + VR + Sbjct: 380 RGAVDWSRVSAGNFPFDLRQPPGPRNALGLVKFMFPNQWNIYLHDSPDQHLMTHDVRAYS 439 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKD 400 +GCVR+ + +L LL ++ + + T V L T +PVH VY ++W + Sbjct: 440 AGCVRLDDPFELAYHLLAAQEDDPVTFFNTILNSSRETQVNLQTPLPVHIVYWTSWVDTE 499 Query: 401 SIIQFRDDIYG 411 + FR+DIYG Sbjct: 500 GRLNFRNDIYG 510 >gi|310815557|ref|YP_003963521.1| peptidoglycan binding domain-containing protein [Ketogulonicigenium vulgare Y25] gi|308754292|gb|ADO42221.1| peptidoglycan binding domain-containing protein [Ketogulonicigenium vulgare Y25] Length = 547 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 99/323 (30%), Positives = 158/323 (48%), Gaps = 16/323 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+ +V LR RL++ G + PS LS FD + V+ FQ HGL G+V + T Sbjct: 213 LQLGDQGDAVLSLRNRLMLQGYMAPS--LSPVFDQSLLLGVQAFQTAHGLATDGVVGAGT 270 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 L +N+ +D RI+Q+ V + R + + +G R++ VN+ NG R+ ++ Sbjct: 271 LAELNMGIDARIQQVLVAMER-ARWSNKPLGARHIWVNLADYHTVIRNNGMDEFRTRSVI 329 Query: 222 GR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 G DR+TP +N ++ NP W +PRSI+ + + L+++P + N+ D G+ Sbjct: 330 GARGADRETPEFSDIMNHMVVNPSWHVPRSIVVGEYLPQLQRNPYAVSHINVQ--DGSGR 387 Query: 280 EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 + +D+N+ NF F R+ P + NA+ K F ++ N Y+HDTP LF R Sbjct: 388 AIDRSLIDFNAYNASNFPFSMREPPSRGNALGLVKFMFPNQWNIYLHDTPSKDLFARETR 447 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL-------ATEVPVHF 390 + GC+R+ + D LL + R + + T + T V L +PVH Sbjct: 448 AFSHGCIRLADPFDFAYQLLGPQTSDPRGLFQRTLDTGRETRVDLEQPLPVQPQPLPVHL 507 Query: 391 VYISAWSPKDSIIQFRDDIYGLD 413 Y + + FR DIYG D Sbjct: 508 DYRTTVIAPSGAVTFRRDIYGRD 530 >gi|299136140|ref|ZP_07029324.1| ErfK/YbiS/YcfS/YnhG family protein [Acidobacterium sp. MP5ACTX8] gi|298602264|gb|EFI58418.1| ErfK/YbiS/YcfS/YnhG family protein [Acidobacterium sp. MP5ACTX8] Length = 604 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 96/325 (29%), Positives = 162/325 (49%), Gaps = 17/325 (5%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSV---------AFDAYVESAVKLFQMRHGLDPSG 155 G S ++ +L RL + GD+ + + +++A + +AVK +Q RHGL G Sbjct: 255 GGSYAALPQLLARLQLEGDVTATDTDTAAASDTAGPRSYNAELVAAVKHYQQRHGLTADG 314 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE-NGKVG 214 + ST++++NVP+++R++QL +L R + + + + R VLVN+P + A + + V Sbjct: 315 KLTQSTIDSLNVPMEVRVQQLNNSLERWRWMPDNFINPR-VLVNLPEFVVRAYDPDHSVA 373 Query: 215 LRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA-LLRQDPQYLKDNNI 271 + ++ G + TP+ + ++F PYW +P SII+K+++ + R YL D Sbjct: 374 FKMKIVDGEAKGNHDTPMFVRSMRYVVFRPYWNVPPSIIKKELLPHIQRSGIGYLADKGY 433 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 + G V + E +I RQ PG N++ K F + + YMH TPE L Sbjct: 434 EVARNDG--TVVTGYTAHDIEHLRYIVRQKPGPKNSLGLVKFLFPNEYDVYMHSTPELPL 491 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK-TTPVKLATEVPVHF 390 FN R + GCVR+ + + W+L+ W I E + K V L T +PV Sbjct: 492 FNLTRRDRSHGCVRLEHADQMAAWVLQGQGDWDEDKISEAMNGDKDNKTVNLKTTLPVII 551 Query: 391 VYISAWSPKDSIIQFRDDIYGLDNV 415 Y +A + +D+ I F D+YG D Sbjct: 552 GYFTATADEDNSIHFFSDLYGYDKA 576 >gi|86148447|ref|ZP_01066737.1| Uncharacterized protein conserved in bacteria [Vibrio sp. MED222] gi|85833744|gb|EAQ51912.1| Uncharacterized protein conserved in bacteria [Vibrio sp. MED222] Length = 512 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 149/285 (52%), Gaps = 10/285 (3%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 FD ++SA+K FQ HGL G+V T++ +N+ D R+ L +N R++ + L Sbjct: 231 FDQDLQSAIKSFQRMHGLTDDGIVGPDTIKWINMSFDERLTSLALNAERVRLWPRDRDSL 290 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P+ ++ E+G+ S V+VGR R+TP+L ++ ++ NP W +P I+ K Sbjct: 291 --IVVNVPSFDMKYWEDGEEVFESKVVVGRKSRKTPLLEINLDSVILNPTWNVPWKIMVK 348 Query: 254 DMMALLRQDPQYLKDNNIHMID--EKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++ D YL+ +N +ID + V ++DW + +F + RQ G NA+ Sbjct: 349 DILPKVKADESYLETHNFQVIDGWRTMETVDTTDIDWQTINFNSFPYRMRQQAGSRNALG 408 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K ++ Y+HDTP LFN+ R +SGC+RV + +L L T R Sbjct: 409 LYKFNTPNKRAIYLHDTPSKGLFNDDFRAYSSGCIRVEHAEELAELLF---ATKVRKVPN 465 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + T V+L +PVH +Y + ++ IQ+R DIY D Sbjct: 466 QSNDLAPNTKVRLKKRIPVHIIYQTVLF-EEGGIQYRGDIYQYDK 509 >gi|256830357|ref|YP_003159085.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfomicrobium baculatum DSM 4028] gi|256579533|gb|ACU90669.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfomicrobium baculatum DSM 4028] Length = 543 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 106/399 (26%), Positives = 187/399 (46%), Gaps = 27/399 (6%) Query: 40 INESYHSIVNDRFDNFLARVDMGI-DSDIPIISKETIAQT------EKAIAFYQDI---- 88 I E++ DRFD LA + + + + +E Q +A+A Y+ + Sbjct: 136 IQENFTPPAPDRFDP-LAHLQRAVREKRLREAVREAAPQVPLYGRLREALAQYRQLSEDP 194 Query: 89 ----LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 L + P LP L +G S + + RLI GDL ++ ++ ++ + Sbjct: 195 VFSQLWQSSLPPLPNGKLEIGESYAGMPLVVLRLIALGDLPRETVMTERYEGHIVKGIMD 254 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK--KLLEQKMGLRYVLVNIPA 202 FQ+RHGL+P G++ T + V R+RQ+++++ R++ LL R + VNIP Sbjct: 255 FQVRHGLEPDGVIGRKTYAQLGVTPSARVRQIELSMERLRWTPLLHAP---RMIAVNIPE 311 Query: 203 ASLEA--VENGKVGLRST--VIVGR-VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 LEA V+NG V +++T VI+G ++ +TP+ R+ I F+PYW +P SI + +++ Sbjct: 312 HVLEAYEVQNGTVQVQTTMRVIIGSALNMRTPLFDGRMRSIEFSPYWNVPLSIARSEVVP 371 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVD-WNSPEPPNFIFRQDPGKINAMASTKIEFY 316 + +DP Y + G+ + +D + RQ PG NA+ K F Sbjct: 372 KILRDPSYFVRQGFEFVAADGQIITTLSMDDLEAVRSGQMRIRQRPGPRNALGDIKFIFP 431 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 ++++ ++H TP LF R + GC+RV + + L ++L+ W I E + Sbjct: 432 NKDSIFLHHTPTTHLFEKQRRDLSHGCIRVEDPVGLAKFVLQHDQVWGEERIREAMSAGV 491 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 ++ ++L V Y + + F DIYG D + Sbjct: 492 SSTLRLREPPQVVLAYNTVQVKNGGRVHFFQDIYGQDKL 530 >gi|110637822|ref|YP_678029.1| hypothetical protein CHU_1418 [Cytophaga hutchinsonii ATCC 33406] gi|110280503|gb|ABG58689.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406] Length = 558 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 86/317 (27%), Positives = 164/317 (51%), Gaps = 8/317 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L LG++ + ++ RL + + + L+ FD ++ ++++FQ GL SG +D Sbjct: 234 RTLTLGDTCYIISSVKRRLQSTSEYN-FDSLNNTFDEQLQESIRIFQTHVGLHASGKIDK 292 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 T++ +N + VN+ R + L + ++LVNI +L + V +V Sbjct: 293 KTIDKLNFTAAEVRGAILVNMERFR-WLPNDLPKEFILVNIADYTLRHFIDKNVVYTESV 351 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 IVGR TP+ + + I FNPYW +PRSI K+++ L+++P YL+ +N+ + +G Sbjct: 352 IVGREYTSTPVFEAMMTYIEFNPYWTVPRSIAVKEILPSLKRNPNYLQSHNMDLF--RGN 409 Query: 280 EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 +++ NF F +++PG N++ K+ F + + Y+HDTP LF R Sbjct: 410 AQVAIPSSFSNYTAGNFPFTIKENPGPKNSLGQVKLMFPNPYSIYLHDTPGKYLFEQEER 469 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 + GC+R+++ + + +L ++ I+++++ +K + L ++PV Y + +S Sbjct: 470 SFSHGCIRLKDPLKFALHILSKQGV-TQADIDKIIRNKKNYVIPLKEKIPVMLTYFTCYS 528 Query: 398 PKDSI-IQFRDDIYGLD 413 + I + F DIYG D Sbjct: 529 KRGDIHLYFFKDIYGKD 545 >gi|325293005|ref|YP_004278869.1| hypothetical protein AGROH133_06435 [Agrobacterium sp. H13-3] gi|325060858|gb|ADY64549.1| hypothetical protein AGROH133_06435 [Agrobacterium sp. H13-3] Length = 645 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 91/275 (33%), Positives = 138/275 (50%), Gaps = 10/275 (3%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 VK FQ +GL G++ +T+ AM D RI ++QV + +I+ L +G RYVL+N Sbjct: 362 VKAFQSENGLKADGVIGRATVRAMVGESNDARIAKVQVAMEQIR-WLPADLGQRYVLINQ 420 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PA +G+ V+VG QT I + FNPYW +P+SII +M+ LR Sbjct: 421 PAFMAYYHNDGQEQFGMKVVVGSKANQTYFFQDEIQTVEFNPYWGVPQSIIVNEMLPKLR 480 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI-FRQDPGKINAMASTKIEFYSRN 319 +DP YL D + + G+ V V+W N + RQ P NA+ KI F + + Sbjct: 481 RDPSYL-DRLGYEVQVGGRAVSSTSVNWFGST--NAVSVRQPPSSDNALGDLKILFPNAH 537 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 YMHDTP FN +R + GC+R+ + + +L S + E + K Sbjct: 538 AIYMHDTPAKSFFNRDMRALSHGCIRLVDPRRMAAAVLGT----SVDKVNEQIAAGKNRA 593 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 V++ ++PV+ Y +AW K +QF DD+Y D+ Sbjct: 594 VQVPVKIPVYVAYFTAWPDKAGKVQFFDDVYDRDS 628 >gi|315179999|gb|ADT86913.1| conserved hypothetical protein [Vibrio furnissii NCTC 11218] Length = 517 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 148/286 (51%), Gaps = 9/286 (3%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + VK FQ HGL G++ TL+ +N+ V R+ L +N R++ Q + Sbjct: 232 YDNSLVEPVKQFQKMHGLKIDGIIGPDTLKWLNMKVPERLALLALNAERMRLWSTQDDTV 291 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P +L+ +GK S V+VGRV R TP++ ++++ ++ NP W +P I+ + Sbjct: 292 --IVVNVPGYNLKYWYSGKPVFESKVVVGRVTRPTPVMSTKLDSLILNPTWKVPHKIMVE 349 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ + ++D YL ++I +I+ + ++ +DW + P F + RQ G NA+ Sbjct: 350 DILPMTKRDASYLSRHHIDIIESWKSDQTLDPALIDWQNVNPKTFPYRMRQQAGNQNALG 409 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K ++ Y+HDTP LFN+ R +SGC+RV + LL+ I Sbjct: 410 LYKFNTPNKRAIYLHDTPSKHLFNHPTRAFSSGCIRVEHADQFATALLETQGINHSELIP 469 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + P+K +PVH +Y + W + + +RDDIY LD + Sbjct: 470 NADDANRAIPLK--KRIPVHIIYQTVWY-EGGEVHYRDDIYRLDRI 512 >gi|254473448|ref|ZP_05086845.1| peptidoglycan-binding domain 1 protein [Pseudovibrio sp. JE062] gi|211957564|gb|EEA92767.1| peptidoglycan-binding domain 1 protein [Pseudovibrio sp. JE062] Length = 625 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 100/325 (30%), Positives = 156/325 (48%), Gaps = 14/325 (4%) Query: 102 LHLGNSSVSVQRLRERLIISG------DLDPSKGLSVAFDAYVESAVKL---FQMRHGLD 152 + LG++ V +L +RL G D + V Y + V+L FQ RHGL Sbjct: 284 IRLGDTGGRVAQLEKRLQAEGYAPYYSDYTGTSETEVPPTFYNDDMVELVKDFQKRHGLT 343 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G+V T A+N ++ R Q+ VNL R++ G RYV VN+ + +E Sbjct: 344 VDGVVGKKTRAALNASLEDRRNQILVNLERMRWDDPLPSG-RYVKVNVAEQMVRVMEGTD 402 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 V + +VG+ TP+ NP W +P SI + + LR++ L I+ Sbjct: 403 VLYETRSVVGKPRNATPLFSDTFEYAEINPTWGVPWSIATNEYLPKLRKNASALSGTGIN 462 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 + + GK V ++W++ F + RQ G+ NA+ + K F +++N Y+HDTP Sbjct: 463 VY-KNGKRVDPTAINWSNVSKRKFGYQLRQKAGRKNALGAVKYMFPNKHNIYLHDTPSKR 521 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 LFN R + GC+RV++ LL + SR +E++ KT +KL VPVH Sbjct: 522 LFNKDQRAFSHGCIRVQDPFTFGEVLLSGS-GHSRAKMEKLRARGKTVRLKLTETVPVHL 580 Query: 391 VYISAWSPKDSIIQFRDDIYGLDNV 415 Y +A++ D +QFR+DIY D Sbjct: 581 RYYTAFAGVDGELQFREDIYKQDKA 605 >gi|327189298|gb|EGE56466.1| hypothetical protein RHECNPAF_642003 [Rhizobium etli CNPAF512] Length = 653 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/277 (32%), Positives = 137/277 (49%), Gaps = 15/277 (5%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ--VNLMRIKKLLEQKMGLRYVLVN 199 V+ FQ GL G++ +T+ AM D ++ V M + L + +G RYV++N Sbjct: 369 VEDFQKERGLKADGVIGQATVRAM-TGGDTNASKIDKLVVAMEQARWLPEDLGSRYVMIN 427 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 PA +GK L V+VG + QT I + FNP+W +P+SII +M+ L Sbjct: 428 QPAYMAYYHNDGKEQLSMRVVVGGKNNQTYFFDDEIETVEFNPFWGVPQSIIINEMLPKL 487 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 R DP YL D + ++ G V VDW N RQ P NA+ KI F + + Sbjct: 488 RSDPNYL-DQLGYEVEVNGHAVASSSVDWYG-STDNVSVRQPPSSDNALGELKILFPNSH 545 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK---TRK 376 YMHDTP F +R + GCVR+ N + +L T +++V K + + Sbjct: 546 AIYMHDTPSKSFFKRDMRALSHGCVRLSNPRAMAAAVLGTT-------VDDVAKQIASGQ 598 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 V++ ++PV+ Y +AW KD ++++ DD+YG D Sbjct: 599 NHAVRVPQKIPVYVSYFTAWPNKDGVVEYFDDVYGRD 635 >gi|237757093|ref|ZP_04585533.1| peptidoglycan-binding domain 1 protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237690747|gb|EEP59915.1| peptidoglycan-binding domain 1 protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 506 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 97/319 (30%), Positives = 164/319 (51%), Gaps = 18/319 (5%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V++LR+ L I G D + + D +ES VK FQ L+ G++ TL +N P++ Sbjct: 194 VKKLRQLLYIYGFYDGNTNSYIYDDELLES-VKRFQESRNLEADGVIGVKTLNELNRPLN 252 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD----R 226 I +++N+ + + L E R + VNIP+ L+ E+ L + VIVG+ R Sbjct: 253 ELIDIIKINMEKYRWLPENLAESR-IEVNIPSFELKYYEDNTEILSTEVIVGKNYEEDFR 311 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 TPI + +I +I NPYW +P+ I KD++ ++ +P++L+D + + G+EV +++ Sbjct: 312 PTPIYYGKIEKITINPYWYVPKKIAAKDILKKIKSNPRFLEDFSFKVF-YNGQEVDYKKI 370 Query: 287 DWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 +W NF F Q PG N + KI F + Y+HDTP LF + R +SGC+ Sbjct: 371 NWWEYNENNFGFTLIQSPGNKNFLGRIKITFSNPFQVYLHDTPFKELFKHKKRAFSSGCI 430 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQ 404 RV + + L ++L + I + + KT + ++ V+ Y +A D+I Sbjct: 431 RVNDPLSLTSYILNKDKS----EILNYIDSNKTIGLTPCKDIYVYIFYFTALVKNDTIY- 485 Query: 405 FRDDIYGLD----NVHVGI 419 F +D+Y D N+ +GI Sbjct: 486 FYEDLYNFDIKILNIMLGI 504 >gi|254363167|ref|ZP_04979216.1| hypothetical protein MHA_2750 [Mannheimia haemolytica PHL213] gi|110735335|gb|ABG89238.1| periplasmic protein precursor [Mannheimia haemolytica] gi|153095061|gb|EDN75612.1| hypothetical protein MHA_2750 [Mannheimia haemolytica PHL213] Length = 510 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 85/282 (30%), Positives = 142/282 (50%), Gaps = 11/282 (3%) Query: 137 YVESAVKLFQMRHGLD-PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 Y ++A ++ M G P + E +L +N R++ + G Sbjct: 218 YRDTAQRVLAMAGGSSAPKAKKGKAVTEVAGGGNGASFYKLALNAQRLRIIPSFNNG--- 274 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + VNIP+ L +G + L+S VIVGR DR+TP+++S+++ ++ NP W +P SI+ KD+ Sbjct: 275 IFVNIPSYQLYYFRDGNLALQSKVIVGREDRRTPVMYSKLSNVVVNPPWNVPTSIMTKDI 334 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW----NSPEPPNFIFRQDPGKINAMAST 311 + L +DP Y + ++D G ++ V+W N+ P + RQ G +A+ Sbjct: 335 IPKLARDPGYADRASFEILDSSGNKINPRSVNWSQYLNAKSSP-YRIRQKAGDDSALGRY 393 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K S + Y+HDTP LF R +SGCVRV +L LLK+ W +V Sbjct: 394 KFNMPSSDAIYLHDTPNRGLFGKTGRALSSGCVRVEKSDELATILLKEA-GWGSDKKNQV 452 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + ++KTT ++ ++ PV+ Y++AW + +Q DIY D Sbjct: 453 LGSKKTTSAQIRSDNPVYLYYVTAWV-EGGKVQTLPDIYNFD 493 >gi|171056700|ref|YP_001789049.1| peptidoglycan-binding domain-containing protein [Leptothrix cholodnii SP-6] gi|170774145|gb|ACB32284.1| Peptidoglycan-binding domain 1 protein [Leptothrix cholodnii SP-6] Length = 516 Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 105/350 (30%), Positives = 164/350 (46%), Gaps = 14/350 (4%) Query: 77 QTEKAIAFYQDILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 Q +A+A Y+ + W P L R L + + L RL + GDL + V Sbjct: 159 QLRQALAQYRALGEHPAWAQKLPPLRGRKLEPLQAWDGLPLLAGRLQVLGDLPADVPVPV 218 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 + + +AV+ FQ RHGL G+V +TL A+ V R RQ+ + L R++ Q +G Sbjct: 219 RHEGALVAAVQAFQRRHGLGDDGVVGRATLAALAVTPAQRARQIALTLERLRWTPLQ-LG 277 Query: 193 LRYVLVNIPAASLEAVENGK----VGLRSTVIVGR-VDRQTPILHSRINRIMFNPYWVIP 247 R ++VN+P L A E V L VIVG+ +D TP+ + I F+PYW +P Sbjct: 278 PRMIVVNVPEFVLRAYETRDDRIDVRLEMKVIVGKALDTPTPLFTEEMRFIEFSPYWNVP 337 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK--EVFVEEVDWNSPEPPNFIFRQDPGKI 305 RSI +++ L+ +P Y + G+ F +E ++ RQ PG Sbjct: 338 RSIAGAELVPRLQSEPAYFTRQGFEFVGRDGRVSAGFGDE-QLDAVLRGELRIRQRPGPN 396 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 NA+ K F + + Y+H TP P LF R + GC+RV+ + L ++L+D P W Sbjct: 397 NALGDIKFVFPNNDAIYLHHTPSPGLFERDRRDFSHGCIRVQEPVALAKFVLQDQPGWDE 456 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 I E + ++ ++L VPV Y + + F D+YG D + Sbjct: 457 ARIVEAMARGQSRTLRLDRPVPVLIAYGTVLV-RQGRPHFLADVYGNDQL 505 >gi|218709906|ref|YP_002417527.1| hypothetical protein VS_1919 [Vibrio splendidus LGP32] gi|218322925|emb|CAV19102.1| conserved hypothetical protein [Vibrio splendidus LGP32] Length = 518 Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 149/285 (52%), Gaps = 10/285 (3%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 FD +++A+K FQ HGL G+V T++ +N+ D R+ L +N R++ + L Sbjct: 237 FDQDLQTAIKSFQRMHGLTDDGIVGPDTIKWINMSFDERLTSLALNAERVRLWPRDRDSL 296 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P+ ++ E+G+ S V+VGR R+TP+L ++ ++ NP W +P I+ K Sbjct: 297 --IVVNVPSFDMKYWEDGEEVFESKVVVGRKSRKTPLLEINLDSVILNPTWNVPWKIMVK 354 Query: 254 DMMALLRQDPQYLKDNNIHMID--EKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++ D YL+ +N +ID + V ++DW + +F + RQ G NA+ Sbjct: 355 DILPKVKADESYLETHNFQVIDGWRTMETVDTTDIDWQTINFNSFPYRMRQQAGSRNALG 414 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K ++ Y+HDTP LFN+ R +SGC+RV + +L L T R Sbjct: 415 LYKFNTPNKRAIYLHDTPSKGLFNDDFRAYSSGCIRVEHAEELAELLFA---TKVRKVPN 471 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + T V+L +PVH +Y + ++ IQ+R DIY D Sbjct: 472 QSNDLAPNTKVRLKKRIPVHIIYQTVLF-EEGGIQYRGDIYQYDK 515 >gi|328543832|ref|YP_004303941.1| peptidoglycan binding domain protein [polymorphum gilvum SL003B-26A1] gi|326413576|gb|ADZ70639.1| Putative peptidoglycan binding domain protein [Polymorphum gilvum SL003B-26A1] Length = 639 Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 87/275 (31%), Positives = 134/275 (48%), Gaps = 8/275 (2%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDL-RIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 VK FQ + L P G+V +T+ A+ + +I +L++ L R + L + +G R V +N Sbjct: 351 VKAFQKENRLTPDGIVGKATIRALVGDSNADKIAKLELALER-SRWLPEDLGSRRVFINQ 409 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PA + VE+GK L V+VG QT + +I + +NPYW +P SII + + L Sbjct: 410 PAFTATYVESGKAPLAMRVVVGTKANQTSFFYDQIETVEYNPYWGVPYSIIVNEKLPKLA 469 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI--FRQDPGKINAMASTKIEFYSR 318 DP YL + GK + VDW++ RQ PG NA+ KI F ++ Sbjct: 470 ADPGYLDKIGYEVTTASGKPIPSASVDWHAVATKKLSVNVRQRPGSDNALGELKILFPNK 529 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 + YMHDTP LFN VR + GCVR+ + + +L S+ ++ + K Sbjct: 530 HAIYMHDTPSKSLFNKDVRAFSHGCVRLSDPRAMAAAVLGK----SKDYVASRIAGGKNE 585 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + +PV+ Y +AW D I + D+Y D Sbjct: 586 SEDVTGVIPVYVAYFTAWPETDGTIGYYGDVYDRD 620 >gi|163803521|ref|ZP_02197391.1| GTP cyclohydrolase II [Vibrio sp. AND4] gi|159172697|gb|EDP57548.1| GTP cyclohydrolase II [Vibrio sp. AND4] Length = 521 Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 90/297 (30%), Positives = 147/297 (49%), Gaps = 10/297 (3%) Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 G LD L +D +E AV FQ HGL G++ +TL +N R+ L +N Sbjct: 229 GHLDTESRL---YDDNLELAVMEFQRIHGLKQDGVIGPNTLRWVNFSPQQRLHSLALNAE 285 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + +++ + V VN+P + +G+ S V+VG+ R+TPI+ ++ ++ N Sbjct: 286 RSRIWSKKRDNV--VFVNVPGYEVTYWHDGRPLFESKVVVGKASRKTPIMTGTMDSVILN 343 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPNFIF- 298 P W +P I+ KD++ ++++P YL ++NI +I ++ ++W + P F + Sbjct: 344 PTWNVPWKIMVKDIIPKVKRNPMYLIEHNIQIIRSWSSREVIDPTTINWATVNPKTFPYR 403 Query: 299 -RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 RQ G NA+ K + Y+HDTP LFN R +SGCVRV + L L Sbjct: 404 MRQSSGSHNALGLYKFNMPNPQAIYLHDTPSKNLFNEDRRAFSSGCVRVEHADQLAELLF 463 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 K +R + R T V L + VH +Y +AW ++ + +RDDIY D+ Sbjct: 464 KTQGLEARLERKRQSGRRSNTSVPLTERIQVHIIYQTAWL-EEGTLYYRDDIYQYDH 519 >gi|42522720|ref|NP_968100.1| putative periplasmic protein YcbB [Bdellovibrio bacteriovorus HD100] gi|39573916|emb|CAE79093.1| putative periplasmic protein YcbB [Bdellovibrio bacteriovorus HD100] Length = 577 Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 102/361 (28%), Positives = 180/361 (49%), Gaps = 29/361 (8%) Query: 79 EKAIAFYQDILSRGGWPELPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 ++ +A+++ I + GGW ++ + + L GN ++ +R RL G PS G +DA Sbjct: 203 KQLLAYFRSIQTAGGWSQIKLAKKSLRQGNQDPAIPAIRGRLQSLGYAVPSTG--DIYDA 260 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 ++ ++ Q +G+ G++ + + +N V R+ QL+VN+ +++ L + M R+V Sbjct: 261 ELKRVIEDVQGVNGMGVDGVIGNEVMTFLNTSVADRVFQLEVNMEKLR-WLPKAMESRHV 319 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 VN+ + + G+ + I G+ R+TP+L + ++ + NP W P SII KD + Sbjct: 320 FVNLATTEFQFFDEGRKIMHFKTINGQSYRRTPVLRNMLSFVELNPTWTAPESIIFKDKI 379 Query: 257 ALLR-QDPQ-YLKDNNIHMIDEK-GKEVFVEEVDWNSPEPPNF--IFRQDPGKINAMAST 311 LR +D Q YL+ + + +I + GKEV + S NF + RQDP + NA+ S Sbjct: 380 NTLRGKDGQEYLRKHRMRLIRKSDGKEVIPSDELLQSLSRSNFPYLLRQDPWRKNALGSI 439 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL------KDTPT--- 362 K + + Y+H T P LF+ R +SGCVR+ + ++L K T T Sbjct: 440 KFPLPNEWSIYLHHTDNPDLFDESKRHLSSGCVRLEDPFTFAEYILRNNVAVKSTQTDDY 499 Query: 363 WSRYHIEEVVKTRKTTP----------VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 W + +E V K+ + L VPV+ +Y++ +D ++F D+YG Sbjct: 500 WPKDKLESFVPPEKSEAYVDRENWEKRIHLKVPVPVYLMYLTVDRAQDGAVRFVKDVYGQ 559 Query: 413 D 413 D Sbjct: 560 D 560 >gi|84393105|ref|ZP_00991870.1| Uncharacterized protein conserved in bacteria [Vibrio splendidus 12B01] gi|84376262|gb|EAP93145.1| Uncharacterized protein conserved in bacteria [Vibrio splendidus 12B01] Length = 512 Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 148/285 (51%), Gaps = 10/285 (3%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 FD +++A+K FQ HGL G+V T++ +N+ D R+ L +N R++ + L Sbjct: 231 FDRDLQTAIKSFQRMHGLTDDGIVGPDTIKWINMSFDDRLTSLALNAERVRLWPRDRDSL 290 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P+ ++ E+G+ S V+VGR R+TP+L ++ ++ NP W +P I+ K Sbjct: 291 --IVVNVPSFDMKYWEDGEEVFESKVVVGRKSRKTPLLEINLDSVILNPTWNVPWKIMVK 348 Query: 254 DMMALLRQDPQYLKDNNIHMID--EKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++ D YL +N +ID + V E+DW + +F + RQ G NA+ Sbjct: 349 DILPKVKADESYLDTHNFQVIDGWRTMETVDTTEIDWQTINFNSFPYRMRQQAGSRNALG 408 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K ++ Y+HDTP LFN+ R +SGC+RV + +L L T R Sbjct: 409 LYKFNTPNKRAIYLHDTPSKGLFNDDFRAYSSGCIRVEHAEELAELLF---ATKVRKVPN 465 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + T V+L +PVH +Y + ++ IQ+R DIY D Sbjct: 466 QSDDLAPNTKVRLKKRIPVHIIYQTVLF-EEGGIQYRGDIYQYDK 509 >gi|156974988|ref|YP_001445895.1| hypothetical protein VIBHAR_02710 [Vibrio harveyi ATCC BAA-1116] gi|156526582|gb|ABU71668.1| hypothetical protein VIBHAR_02710 [Vibrio harveyi ATCC BAA-1116] Length = 530 Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 90/297 (30%), Positives = 146/297 (49%), Gaps = 10/297 (3%) Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 G LD L +D +E AV FQ HGL G++ +TL +N R+ L +N Sbjct: 238 GHLDTETTL---YDENLELAVMEFQRIHGLKQDGIIGPNTLRWINFSPQQRLHSLALNAE 294 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + +++ + V VN+P + +G+ S V+VG+ R+TPI+ ++ ++ N Sbjct: 295 RSRIWSKERDNV--VFVNVPGYEVTYWHDGQPLFESKVVVGKASRKTPIMTGTMDSVILN 352 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPNFIF- 298 P W +P I+ KD++ ++++P YL ++NI +I ++ ++W + P F + Sbjct: 353 PTWNVPWKIMVKDIIPKVKRNPMYLMEHNIQIIRSWTSREIIDPTTINWATVNPRTFPYR 412 Query: 299 -RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 RQ G NA+ K + Y+HDTP LFN R +SGCVRV + L L Sbjct: 413 MRQSSGSHNALGLYKFNMPNPQAIYLHDTPSKNLFNQDRRAFSSGCVRVEHADQLAELLF 472 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 K R + R T V L + VH +Y +AW ++ + +RDDIY D+ Sbjct: 473 KTQGLEERLAKKRQSGRRSNTSVPLTERIQVHIIYQTAWL-EEGTLYYRDDIYQYDH 528 >gi|260768291|ref|ZP_05877225.1| hypothetical protein VFA_001342 [Vibrio furnissii CIP 102972] gi|260616321|gb|EEX41506.1| hypothetical protein VFA_001342 [Vibrio furnissii CIP 102972] Length = 517 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 148/286 (51%), Gaps = 9/286 (3%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + VK FQ HGL G++ TL+ +N+ V R+ L +N R++ Q + Sbjct: 232 YDNSLVEPVKQFQKMHGLKIDGIIGPDTLKWLNMKVPERLALLALNAERMRLWTTQDDTV 291 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P +L+ +GK S V+VGRV R TP++ ++++ ++ NP W +P I+ + Sbjct: 292 --IVVNVPGYNLKYWYSGKPVFESKVVVGRVTRPTPVMSTKLDSLILNPTWNVPHKIMVE 349 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ + ++D YL ++I +I+ + ++ +DW + P F + RQ G NA+ Sbjct: 350 DILPMTKRDASYLSRHHIDIIESWKSDQTLDPALIDWQNVNPKTFPYRMRQQAGNQNALG 409 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K ++ Y+HDTP LFN+ R +SGC+RV + LL+ I Sbjct: 410 LYKFNTPNKRAIYLHDTPSKHLFNHPTRAFSSGCIRVEHADQFATTLLETQGINDSELIP 469 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + P+K +PVH +Y + W + + +RDDIY LD + Sbjct: 470 NPDAANRAIPLK--KRIPVHIIYQTVWY-EGGEVHYRDDIYRLDRI 512 >gi|87120480|ref|ZP_01076374.1| hypothetical protein MED121_22022 [Marinomonas sp. MED121] gi|86164123|gb|EAQ65394.1| hypothetical protein MED121_22022 [Marinomonas sp. MED121] Length = 561 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 99/362 (27%), Positives = 173/362 (47%), Gaps = 23/362 (6%) Query: 79 EKAIAFYQDILSRGGWPELPIR-----PLHLGNSSVSVQRLRERLIISGDLDPSKGL--S 131 +K + +YQDI ++ + IR PL LG+ + +LR RL+ GD+ S Sbjct: 205 QKWLVYYQDISAK----QKDIRVTAGVPLSLGDQGPRIAQLRARLVQLGDIRFSTRTIQE 260 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 FD ++ A+ FQ RH L G S T+E +N+P+ LR +Q+ NL R + L ++ Sbjct: 261 DKFDKKLKQALINFQRRHDLTADGHAGSQTIEMLNIPISLRAKQIAYNLERWR-WLPTEL 319 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 + V++ + + N + V++G+ +R+TP+ + ++ NP W +P I Sbjct: 320 EAERIWVDLTDYKVHTILNDQHSTMK-VVIGKKERKTPVFKGEMTYMVTNPTWRVPHRIA 378 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDE---KGKEVFVEEVDWN--SPEPPNFIFRQDPGKIN 306 Q+ ++ +P YL + + KE+ +DW +PE + F Q P + N Sbjct: 379 QESLLPKAHANPNYLIEQGYKVYSSWTIGAKELDPSLIDWRKVTPENLKYRFEQTPDEGN 438 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 A+ K F +RN Y+HDTP LF R +SGC+R+ L+ + Sbjct: 439 ALGLYKFMFPNRNEIYLHDTPAKHLFKESNRAFSSGCIRLEKPQLFANNLVAGSKQVEA- 497 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD---NVHVGIIPLP 423 ++ +++++T V L ++PV+ VY + ++ + FR DIY D +G P P Sbjct: 498 -LQNAIQSKETKVVSLPKQLPVYIVYFTVVPDRNGMPGFRKDIYERDILMEEAMGYFPSP 556 Query: 424 ED 425 + Sbjct: 557 AN 558 >gi|153835596|ref|ZP_01988263.1| cell wall degradation protein [Vibrio harveyi HY01] gi|148867813|gb|EDL67053.1| cell wall degradation protein [Vibrio harveyi HY01] Length = 515 Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 90/297 (30%), Positives = 146/297 (49%), Gaps = 10/297 (3%) Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 G LD L +D +E AV FQ HGL G++ +TL +N R+ L +N Sbjct: 223 GHLDTETTL---YDENLELAVMEFQRIHGLKQDGIIGPNTLRWINFSPQQRLHSLALNAE 279 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + +++ + V VN+P + +G+ S V+VG+ R+TPI+ ++ ++ N Sbjct: 280 RSRIWSKERDNV--VFVNVPGYEVTYWHDGQPLFESKVVVGKASRKTPIMTGTMDSVILN 337 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPNFIF- 298 P W +P I+ KD++ ++++P YL ++NI +I ++ ++W + P F + Sbjct: 338 PTWNVPWKIMVKDIIPKVKRNPMYLMEHNIQIIRSWTSREIIDPTTINWATVNPRTFPYR 397 Query: 299 -RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 RQ G NA+ K + Y+HDTP LFN R +SGCVRV + L L Sbjct: 398 MRQSSGSHNALGLYKFNMPNPQAIYLHDTPSKNLFNQDRRAFSSGCVRVEHADQLAELLF 457 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 K R + R T V L + VH +Y +AW ++ + +RDDIY D+ Sbjct: 458 KTQGLEERLAKKRQSGRRSNTSVPLTERIQVHIIYQTAWL-EEGTLYYRDDIYQYDH 513 >gi|158422063|ref|YP_001523355.1| hypothetical protein AZC_0439 [Azorhizobium caulinodans ORS 571] gi|158328952|dbj|BAF86437.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 649 Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 98/318 (30%), Positives = 163/318 (51%), Gaps = 15/318 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V LR RL L + +DA + AV FQ GL+ G+V ST Sbjct: 317 LRPGDMDARVPALRARL----GLKSATASDRLYDADLARAVAAFQGASGLNADGVVGPST 372 Query: 162 LEAMNV---PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 LE +N P + R + N+ R + L + +G +V+VNIP + V++GK ++ Sbjct: 373 LEVLNRVENPAERRA-DIIANMERWR-WLPRDLGSVHVMVNIPEFVVRVVDDGKTIHQTR 430 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 V+VG+ + QTP+L + ++ NPYW IP SI +K+M+ L++DP +L + ++ + G Sbjct: 431 VVVGKPENQTPLLTHDMEYVVLNPYWNIPPSIARKEMLPNLQRDPYFLARQGMEVV-KNG 489 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 + V V+W + FRQ PG+ NA+ K F + ++ Y+HDTP LF N R Sbjct: 490 RVVDPGTVNWAQGT-GGYSFRQPPGERNALGRIKFMFPNDHSVYLHDTPSKALFANDRRA 548 Query: 339 ETSGCVRVRNIIDL-DVWLLKDTP--TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 + GC+RV++ + +V P W+ I +++ + + L +PVH VY + Sbjct: 549 YSHGCIRVQDPLKFAEVIFNIGMPGQGWTDEKIGKMLGGAERY-LTLKQRIPVHLVYFTT 607 Query: 396 WSPKDSIIQFRDDIYGLD 413 + + R+D+YG + Sbjct: 608 FVDDSGRLVSREDVYGTN 625 >gi|167855604|ref|ZP_02478364.1| hypothetical protein HPS_03656 [Haemophilus parasuis 29755] gi|167853295|gb|EDS24549.1| hypothetical protein HPS_03656 [Haemophilus parasuis 29755] Length = 516 Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 88/286 (30%), Positives = 143/286 (50%), Gaps = 17/286 (5%) Query: 137 YVESAVKLFQ------MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 Y E+ KLF+ + G + S ++N P QL +N R++ + Sbjct: 222 YQETVQKLFEISSNDALNQGGNKSAKSTKENKGSVNTP---SFTQLALNAQRLRLIPSFN 278 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 G + VNIP+ L GK+ L+S VIVGR DR+TP+++S+++ ++ NP W +P +I Sbjct: 279 NG---IFVNIPSYQLYYFREGKLVLQSKVIVGRNDRKTPVMYSKLSNVVVNPPWNVPSTI 335 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN---FIFRQDPGKINA 307 KD++ LR+DP ++D KG + ++W + E N + RQ G +A Sbjct: 336 KNKDLVPKLRKDPILADKLGYEILDGKGNKFSAHSINWAAYEGKNNFPYHIRQKAGDDSA 395 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF+ R +SGCVRV +L LL + WS Sbjct: 396 LGRYKFNMPSSDAIYLHDTPNRGLFSKKNRALSSGCVRVAKADELATLLLAEA-GWSAQR 454 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 ++V+ ++KTT + ++ PV+ Y+++W I DIY D Sbjct: 455 KQDVLASKKTTSAPIRSDNPVYLYYVTSWIEGGKIYTL-PDIYQFD 499 >gi|269961715|ref|ZP_06176076.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833580|gb|EEZ87678.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 530 Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 106/396 (26%), Positives = 182/396 (45%), Gaps = 32/396 (8%) Query: 24 LSLVEKPIHASVLDEIINESYHSI-VNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 LSL+ I LDE +NE + +++ F+ A + + P+ Q ++ + Sbjct: 160 LSLLSNEITVGKLDEFLNELRSPLQMDESFNTAYASLSTYAKFEFPLY------QQDQRL 213 Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 A D L + + + R++ + G LD L +D +E AV Sbjct: 214 ARVGD---------------ELFDKASMIARMQIVGVDVGHLDTETTL---YDENLELAV 255 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 FQ HGL G++ +T+ +N R+ L +N R + +++ + V VN+P Sbjct: 256 MEFQRIHGLKQDGIIGPNTIRWINFSPQQRLHSLALNAERSRIWAKERDNV--VFVNVPG 313 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + +G+ S V+VG+ R+TPI+ ++ ++ NP W +P I+ KD++ ++++ Sbjct: 314 YEVTYWHDGQPLFESKVVVGKASRKTPIMTGTLDSVILNPTWNVPWKIMVKDIIPKVKRN 373 Query: 263 PQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSR 318 P YL +NI +I ++ ++W + P F + RQ G NA+ K + Sbjct: 374 PMYLMQHNIQIIRSWTSREIIDPTTINWATVNPRTFPYRMRQSSGSHNALGLYKFNMPNP 433 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 Y+HDTP LFN R +SGCVRV + L L K R + R T Sbjct: 434 QAIYLHDTPSKNLFNQDRRAFSSGCVRVEHADQLAELLFKTQGLEERLAKKRQNGRRSNT 493 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 V L+ + VH +Y +AW ++ + +RDDIY D+ Sbjct: 494 SVPLSERIQVHIIYQTAWL-EEGTLYYRDDIYQYDD 528 >gi|241204955|ref|YP_002976051.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858845|gb|ACS56512.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 637 Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 89/288 (30%), Positives = 143/288 (49%), Gaps = 15/288 (5%) Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ--VNLMRIKKLLE 188 S+ + + S V+ FQ GL G++ +T+ AM D ++ + M + L Sbjct: 342 SIDYSPDIVSLVEEFQKERGLKADGVIGQATVRAM-TGGDTNASKIDKLIVAMEQARWLP 400 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + +G RYV++N PA + +GK L V+VG + QT I + FNP+W +P+ Sbjct: 401 EDLGSRYVMINQPAYMVYYHNDGKEQLSMRVVVGGKNNQTYFFDDEIETVEFNPFWGVPQ 460 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SII +M+ LR DP YL D + ++ G V VDW N RQ P NA+ Sbjct: 461 SIIINEMLPKLRSDPNYL-DQLGYEVEVNGHAVASSSVDWYG-STNNVSVRQPPSSDNAL 518 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 KI F + + YMHDTP F +R + GCVR+ + + +L T + Sbjct: 519 GELKILFPNSHAIYMHDTPSKSFFKRDMRALSHGCVRLADPRAMAAAVLGTT-------V 571 Query: 369 EEVVK---TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 ++V K + + V++ ++PV+ Y +AW KD ++++ DD+YG D Sbjct: 572 DDVAKQIASGQNHAVRVPQKIPVYVSYFTAWPNKDGVVEYFDDVYGRD 619 >gi|254507080|ref|ZP_05119218.1| cell wall degradation protein [Vibrio parahaemolyticus 16] gi|219550075|gb|EED27062.1| cell wall degradation protein [Vibrio parahaemolyticus 16] Length = 517 Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 84/285 (29%), Positives = 150/285 (52%), Gaps = 9/285 (3%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + A+K FQ HGL G++ T + +NV + R+ L +N RI+ K + Sbjct: 232 YDMSLVPAIKQFQKLHGLKEDGVIGPETAKWLNVSMKDRLTTLALNAERIRYWPSDKDTI 291 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P+ + GK S V+VGR R TP++ + ++ ++ NP W +P I+ + Sbjct: 292 --IVVNVPSYEMTYWHGGKNVFESKVVVGRQARPTPLMITNLDTLILNPTWNVPWKIMVE 349 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFV--EEVDWNSPEPPNFIFR--QDPGKINAMA 309 D++ +++DP+YL +I ++ + G + + +++DW++ P +F +R Q G NA+ Sbjct: 350 DIIPKMKEDPEYLTRQHIEILPKWGSKERIDPQQIDWDAMNPKSFPYRMTQLSGNQNALG 409 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K ++ Y+HDTP LFN R +SGC+RV + LL+ Sbjct: 410 LYKFNTPNKRAIYLHDTPSKGLFNEPQRAFSSGCIRVEHADVFASRLLEHQGLTKSKLSA 469 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 E ++ K P++ +PVH +Y +AW ++ +R+DIY LD Sbjct: 470 EADRSNKKIPLR--KRIPVHIIYQTAWF-EEGKTHYREDIYQLDT 511 >gi|308049138|ref|YP_003912704.1| peptidoglycan-binding domain 1 protein [Ferrimonas balearica DSM 9799] gi|307631328|gb|ADN75630.1| Peptidoglycan-binding domain 1 protein [Ferrimonas balearica DSM 9799] Length = 492 Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 98/325 (30%), Positives = 159/325 (48%), Gaps = 18/325 (5%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V +R +L GD P + S+ +D + +AV+ FQ RHGL G++ T Sbjct: 167 GEHHAEVAPIRRQLARLGDY-PGRTDSLRYDGGMVAAVQQFQRRHGLKADGVIGPRTRHW 225 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 + + R R L L+R + ++LVNIP L+ V++G+ + V+VG Sbjct: 226 LRLDYQERARLLARALVR-QAHDRHYFAPDHLLVNIPDYRLDWVQDGQSRFSARVVVGMP 284 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV- 283 R+TP +HS + ++ NPYW +P SI++KD++ + D Y++ N ++D + + +++ Sbjct: 285 SRRTPRMHSELRSVVVNPYWNVPNSIMRKDLLPRILTDGSYVQRNRFEVLDSENRPLWLS 344 Query: 284 -EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 +E+ + + + RQ PG N++ K + Y+HDTP+ LF R +SG Sbjct: 345 PDELSRLAYQGFPYRLRQRPGPGNSLGRYKFHLINSQAIYLHDTPKQRLFERSTRAFSSG 404 Query: 343 CVRVRNIIDLDVWLLK----DTPTWSRYHIEEVVKTRKTTPVKLATEVP--VHFVYISAW 396 C+RV N L LL+ + P RY + P L + P V+ VY SAW Sbjct: 405 CIRVENADLLADLLLQAQSPEGPPLKRY-------LNASGPRWLTLQQPLAVYLVYWSAW 457 Query: 397 SPKDSIIQFRDDIYGLDNVHVGIIP 421 QFR DIY L+ +G P Sbjct: 458 M-DGGRAQFRSDIYELEKAAIGRQP 481 >gi|261493954|ref|ZP_05990462.1| hypothetical protein COK_2352 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310386|gb|EEY11581.1| hypothetical protein COK_2352 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 518 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/282 (30%), Positives = 141/282 (50%), Gaps = 11/282 (3%) Query: 137 YVESAVKLFQMRHGLD-PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 Y ++A ++ M G P + E +L +N R++ + G Sbjct: 226 YRDTAQRVLAMAGGSSAPKAKKGKAVTEVAGGGNGASFYKLALNAQRLRIIPSFNNG--- 282 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + VNIP+ L +G + L+S VIVGR DR+TP++ S+++ ++ NP W +P SI+ KD+ Sbjct: 283 IFVNIPSYQLYYFRDGNLALQSKVIVGREDRRTPVMDSKLSNVVVNPPWNVPTSIMTKDI 342 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW----NSPEPPNFIFRQDPGKINAMAST 311 + L +DP Y + ++D G ++ V+W N+ P + RQ G +A+ Sbjct: 343 IPKLARDPGYADRASFEILDSSGNKINPRSVNWSQYLNAKSSP-YRIRQKAGDDSALGRY 401 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K S + Y+HDTP LF R +SGCVRV +L LLK+ W +V Sbjct: 402 KFNMPSSDAIYLHDTPNRGLFGKTGRALSSGCVRVEKSDELATILLKEA-GWGSDKKNQV 460 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + ++KTT ++ ++ PV+ Y++AW + +Q DIY D Sbjct: 461 LGSKKTTSAQIRSDNPVYLYYVTAWV-EGGKVQTLPDIYNFD 501 >gi|315633943|ref|ZP_07889232.1| conserved hypothetical protein [Aggregatibacter segnis ATCC 33393] gi|315477193|gb|EFU67936.1| conserved hypothetical protein [Aggregatibacter segnis ATCC 33393] Length = 487 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 132/245 (53%), Gaps = 7/245 (2%) Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 + + +L +N R++ L + G + VNIP+ L +G+V L S VIVG+ R+TP+ Sbjct: 229 VELHRLAINAQRLRILPVFQDG---IFVNIPSYELNYYRDGQVILSSRVIVGQSSRKTPV 285 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 + SR++ ++ NP W P +I +D++ +R+DP Y+ + +ID G + +DW + Sbjct: 286 MSSRLSNVVVNPPWNAPTRLINEDIIPKVRKDPSYIYRHGYTIIDGSGNTIDPYTIDWEN 345 Query: 291 PEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 F + RQ P +A+ + K S Y+HDTP+ LF N R +SGCVRV Sbjct: 346 MSAKRFPYRLRQAPSDNSALGNYKFNMPSSEAIYLHDTPKRNLFGNKNRALSSGCVRVEK 405 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 L LLK+ W+ + V+K++KTT + ++ PV Y++AW KD + D Sbjct: 406 SDQLATILLKEA-GWTDETKQNVLKSKKTTSAGIKSDNPVFLYYVTAWVDKDQVHTL-PD 463 Query: 409 IYGLD 413 IYG D Sbjct: 464 IYGYD 468 >gi|332885569|gb|EGK05815.1| hypothetical protein HMPREF9456_02079 [Dysgonomonas mossii DSM 22836] Length = 592 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/266 (29%), Positives = 138/266 (51%), Gaps = 10/266 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSV-------AFDAYVESAVKLFQMRHGLDPSGM 156 LG+ + + + +RL ++G+ ++ S+ D + A+ +F+ ++ Sbjct: 236 LGDKNKHISEIAQRLALTGEYVIAESDSIRDDSSEMMLDENLLEAINIFRKKNSYPEEKE 295 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 + T++A+N P+D + +LQ N+ R + + + +++ VN+ +A L A E + L Sbjct: 296 IGKLTIDALNRPLDYYLEKLQANMERYRWKMTKAKHNKHIEVNVASAYLTATEQDSLPLI 355 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 V VG +TP+L S I+ + NP W IP SI QK++ L ++DP Y+K +N+ + Sbjct: 356 MKVCVGTATNKTPLLQSDISYLNLNPIWNIPTSIAQKEVAVLQKKDPTYIKRHNMKLY-R 414 Query: 277 KGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 GKEV + ++W +P F + RQ PG+ NA+ K F + + Y+HDTP F Sbjct: 415 NGKEVDITTINWKEVDPSKFSYTIRQSPGESNALGLVKFMFSNAFSVYLHDTPSKAAFGR 474 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDT 360 R + GCVRV+ DL + + T Sbjct: 475 KNRAVSHGCVRVQKPFDLAFFCMSTT 500 >gi|261494761|ref|ZP_05991240.1| hypothetical protein COI_0554 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309578|gb|EEY10802.1| hypothetical protein COI_0554 [Mannheimia haemolytica serotype A2 str. OVINE] Length = 510 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/282 (30%), Positives = 141/282 (50%), Gaps = 11/282 (3%) Query: 137 YVESAVKLFQMRHGLD-PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 Y ++A ++ M G P + E +L +N R++ + G Sbjct: 218 YRDTAQRVLAMAGGSSAPKAKKGKAVTEVAGGGNGASFYKLALNAQRLRIIPSFNNG--- 274 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + VNIP+ L +G + L+S VIVGR DR+TP++ S+++ ++ NP W +P SI+ KD+ Sbjct: 275 IFVNIPSYQLYYFRDGNLALQSKVIVGREDRRTPVMDSKLSNVVVNPPWNVPTSIMTKDI 334 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW----NSPEPPNFIFRQDPGKINAMAST 311 + L +DP Y + ++D G ++ V+W N+ P + RQ G +A+ Sbjct: 335 IPKLARDPGYADRASFEILDSSGNKINPRSVNWSQYLNAKSSP-YRIRQKAGDDSALGRY 393 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K S + Y+HDTP LF R +SGCVRV +L LLK+ W +V Sbjct: 394 KFNMPSSDAIYLHDTPNRGLFGKTGRALSSGCVRVEKSDELATILLKEA-GWGSDKKNQV 452 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + ++KTT ++ ++ PV+ Y++AW + +Q DIY D Sbjct: 453 LGSKKTTSAQIRSDNPVYLYYVTAWV-EGGKVQTLPDIYNFD 493 >gi|222148534|ref|YP_002549491.1| hypothetical protein Avi_2078 [Agrobacterium vitis S4] gi|221735520|gb|ACM36483.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 614 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 139/275 (50%), Gaps = 9/275 (3%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDL-RIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 V+ +Q GL P G++ +T+ M + +I +L V + +++ L +G RYV +N Sbjct: 332 VESYQKERGLKPDGVIGQATVRTMVGHSNAEKIEKLVVAMEQLR-WLPADLGPRYVFINQ 390 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PA + + + V+VG QT + I + FNPYW +PRSII +M+ LR Sbjct: 391 PAFEAYYFNDRQQQIAMKVVVGAPQHQTFFFQNMIQTVEFNPYWGVPRSIIVNEMLPKLR 450 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 QDP YL D + + KG++V +VDW + + RQ P NA+ KI F + + Sbjct: 451 QDPSYL-DRLGYEVSYKGRKVASSQVDWYTTS--DVDVRQPPSSDNALGDLKILFPNAHA 507 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP F +R + GCVR+ + ++ T I+ + + + V Sbjct: 508 IYMHDTPAKSFFKRDMRALSHGCVRLAEPRVMAAAVMGTTVE----DIDAQIASGQNRAV 563 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 ++ + PV+ Y +AW KD ++++ DD+YG D Sbjct: 564 QVPQKFPVYVAYFTAWPDKDGVVRYYDDVYGRDEA 598 >gi|37680299|ref|NP_934908.1| hypothetical protein VV2115 [Vibrio vulnificus YJ016] gi|37199046|dbj|BAC94879.1| uncharacterized protein conserved in bacteria [Vibrio vulnificus YJ016] Length = 535 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/291 (30%), Positives = 147/291 (50%), Gaps = 18/291 (6%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D +E AVK FQ HGL G+V TL+ +N+ R+ + +N R + E++ L Sbjct: 249 YDTQLELAVKQFQKMHGLTQDGVVGPITLKWLNMTPAQRLHSMALNSERSRLWPEERDLL 308 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 VLVN+P ++ G+ S V+VGR R+TPI+ +++ ++ NP W +P++I+ K Sbjct: 309 --VLVNVPGYEMKFWYKGEEIFESKVVVGRKSRKTPIMVGKMDGVVLNPVWNVPKTIMVK 366 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFV--EEVDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++ D +L NI +I+ + V + +DW +F + RQ G NA+ Sbjct: 367 DILPKVKYDQSFLTKQNIEIIEGWDSQTAVNPQTIDWTKVSLKSFPYKMRQLAGDKNALG 426 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K ++ ++HDTP LF R +SGCVRV+N + LLK +E Sbjct: 427 LYKFNIPNKRAIFLHDTPSQSLFQEDSRAFSSGCVRVQNADQFALQLLKTQG------LE 480 Query: 370 E-----VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 E + T + L +PVH +Y + W + + +RDDIY D V Sbjct: 481 EELSNLATRQEANTMIPLKRRIPVHIIYQTVWFEGEE-LNYRDDIYQYDLV 530 >gi|190892061|ref|YP_001978603.1| hypothetical protein RHECIAT_CH0002473 [Rhizobium etli CIAT 652] gi|190697340|gb|ACE91425.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 636 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 88/277 (31%), Positives = 137/277 (49%), Gaps = 15/277 (5%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ--VNLMRIKKLLEQKMGLRYVLVN 199 V+ FQ GL G++ +T+ AM D ++ V M + L + +G RYV++N Sbjct: 352 VEDFQKERGLKADGVIGQATVRAM-TGGDTNASKIDKLVVAMEQARWLPEDLGSRYVMIN 410 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 PA +GK L V+VG + QT I + FNP+W +P+SII +M+ L Sbjct: 411 QPAYMAYYHNDGKEQLSMRVVVGGKNNQTYFFDDEIETVEFNPFWGVPQSIIINEMLPKL 470 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 R DP YL D + ++ G V VDW N RQ P NA+ KI F + + Sbjct: 471 RSDPNYL-DQLGYEVEVNGHAVASSSVDWYG-STDNVSVRQPPSSDNALGELKILFPNSH 528 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK---TRK 376 YMHDTP F +R + GCVR+ N + +L T +++V K + + Sbjct: 529 AIYMHDTPSKSFFKRDMRALSHGCVRLSNPRAMAAAVLGTT-------VDDVAKQIASGQ 581 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 V++ ++PV+ Y +AW K+ ++++ DD+YG D Sbjct: 582 NHAVRVPQKIPVYVSYFTAWPNKEGVVEYFDDVYGRD 618 >gi|222086217|ref|YP_002544749.1| hypothetical protein Arad_2690 [Agrobacterium radiobacter K84] gi|221723665|gb|ACM26821.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 633 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/273 (31%), Positives = 139/273 (50%), Gaps = 8/273 (2%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 V+ FQ GL G++ S++ AM D +I++L + + +++ L ++G RYVL+N Sbjct: 350 VEDFQKEKGLTSDGVIGQSSVRAMVGENSDAKIQKLVIAMEQLR-WLPNELGSRYVLINQ 408 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PA + N + L V+VG QT +I + FNP+W +P+SII +M+ LR Sbjct: 409 PAFMVYYHNNNQEQLSMRVVVGGKQHQTFFFEDQIQTVEFNPFWGVPQSIIINEMLPKLR 468 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN 320 DP YL D + ++ G+ V VDW + RQ P NA+ KI F + + Sbjct: 469 ADPNYL-DRMGYQVEVGGRAVASSSVDWYG-STKSVAVRQPPSSDNALGELKILFPNSHA 526 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 YMHDTP+ F +R + GCVR+ + + +L T I + + + V Sbjct: 527 IYMHDTPQKSFFKKDMRALSHGCVRLADPRAMAAAVLNTTVA----DIAKQIAGGQNKAV 582 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + +VP++ Y +AW KD ++Q+ +D+Y D Sbjct: 583 AVPQKVPIYIAYFTAWPNKDGVVQYFNDVYDRD 615 >gi|326424107|ref|NP_761768.2| L,D-transpeptidase YcbB [Vibrio vulnificus CMCP6] gi|319999488|gb|AAO11295.2| L,D-transpeptidase YcbB [Vibrio vulnificus CMCP6] Length = 535 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 147/291 (50%), Gaps = 18/291 (6%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D +E AVK FQ HGL G+V TL+ +N+ R+ + +N R + E++ L Sbjct: 249 YDTQLELAVKQFQKMHGLTQDGVVGPITLKWLNMTPAQRLHSMALNSERSRLWPEERDLL 308 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 VLVN+P ++ G+ S V+VGR R+TPI+ +++ ++ NP W +P++I+ K Sbjct: 309 --VLVNVPGYEMKFWYKGEEIFESKVVVGRKSRKTPIMVGKMDGVVLNPVWNVPKTIMVK 366 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFV--EEVDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++ D +L NI +++ + V + +DW +F + RQ G NA+ Sbjct: 367 DILPKVKYDQSFLTKQNIEIVEGWDSQTAVNPQTIDWTKVSLKSFPYKMRQLAGDKNALG 426 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K ++ ++HDTP LF R +SGCVRV+N + LLK +E Sbjct: 427 LYKFNIPNKRAIFLHDTPSKSLFQEDSRAFSSGCVRVQNADQFALQLLKTQG------LE 480 Query: 370 E-----VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 E + T + L +PVH +Y + W + + +RDDIY D V Sbjct: 481 EELSNLATRQEANTMIPLKRRIPVHIIYQTVWFEGEE-LNYRDDIYQYDLV 530 >gi|91975886|ref|YP_568545.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91682342|gb|ABE38644.1| Peptidoglycan-binding domain 1 [Rhodopseudomonas palustris BisB5] Length = 716 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 98/318 (30%), Positives = 153/318 (48%), Gaps = 28/318 (8%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV- 169 V +LR +L I+ D D S +DA V AV+ FQ L P+G++D T++ +N P Sbjct: 348 VPQLRAKLGITEDAD-----SSTYDAKVAEAVRKFQRSADLKPTGVLDDRTVKVLNTPKR 402 Query: 170 DLRIRQLQVNLMRIKKLLEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 D I + VN+ R + L Q +G YV++NIP +L+ ++NG + V+ G+ Sbjct: 403 DRSIDTIIVNMERWRWLPRQLGAASIGNAYVILNIPDYTLKVMQNGAQVWTTRVVTGKPG 462 Query: 226 RQ-TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 + TP+L + I NP W +P SII + + L QDP L + M + + + Sbjct: 463 KHATPLLTETMKYITVNPTWNVPPSIINNEYLPALAQDPTVLDRMGLKMSRNRDGSIHIS 522 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 Q PG+ NA+ + F ++ Y HDTP+ LF R + GC+ Sbjct: 523 ---------------QPPGEANALGRVRFNFPNKFLVYQHDTPDKNLFARDERAFSHGCM 567 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 RV+N LL T RY E++ + R +K T +PV+ Y +A+ D Sbjct: 568 RVQNPDQYAAALLNITMPNERYTPEKIRSMYGRSEIDLKFPTPIPVNITYQTAFVDDDGK 627 Query: 403 IQFRDDIYGLDNVHVGII 420 +Q R DIYG D+ + I+ Sbjct: 628 LQIRKDIYGRDSAMLAIL 645 >gi|260914201|ref|ZP_05920674.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] gi|260631834|gb|EEX50012.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] Length = 511 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 133/246 (54%), Gaps = 8/246 (3%) Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 ++ ++ +N R++ + E GL VNIP+ LE +G++ L S VIVG+ R+TP++ Sbjct: 256 KMYKMAINAQRLRVIPEFTDGL---FVNIPSYQLEYYRDGQLVLTSRVIVGKKARKTPVM 312 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP 291 +S+++ ++ NP W P +I +D++ +R+DP Y+ N +ID KG V +DW + Sbjct: 313 YSKLSNVVVNPPWNAPVRLINEDIIPKVRKDPSYIYRNGYTIIDGKGNSVDPYTIDWENM 372 Query: 292 EPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 F + RQ PG +A+ + K S + Y+HDTP LF R +SGCVRV Sbjct: 373 TAKKFPYRLRQAPGD-SALGNFKFNMPSSDAIYLHDTPNRGLFGKKDRALSSGCVRVEKS 431 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 L LLK+ WS V+++RKTT +A++ PV Y++ W K DI Sbjct: 432 DQLATILLKEAG-WSEERKRSVLQSRKTTSANVASDNPVFLYYVTMWVNKGQTHTL-PDI 489 Query: 410 YGLDNV 415 YG D+ Sbjct: 490 YGYDST 495 >gi|326795030|ref|YP_004312850.1| ErfK/YbiS/YcfS/YnhG family protein [Marinomonas mediterranea MMB-1] gi|326545794|gb|ADZ91014.1| ErfK/YbiS/YcfS/YnhG family protein [Marinomonas mediterranea MMB-1] Length = 562 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 91/348 (26%), Positives = 181/348 (52%), Gaps = 18/348 (5%) Query: 79 EKAIAFYQDILSRGGWPELPIR---PLHLGNSSVSVQRLRERLIISGDLDPS--KGLSVA 133 +K + +YQ++ + P++ + PL LG+ V +LR RLI GD+ S K Sbjct: 206 QKWLVYYQELADKE--PDIKVNVGVPLTLGDEGPRVAQLRARLIQLGDIRFSTRKVNEDQ 263 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 FD ++ A+ FQ RH L G S T++ +N+P+ R++Q+ NL R + L ++ Sbjct: 264 FDERLKDALINFQRRHHLTADGAAGSKTIQTLNIPLKERVKQINYNLERWR-WLPSRLEA 322 Query: 194 RYVLVNIPAASLEAVENGKV-GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 + V++ + NG+ +R V++G+ R+TP+ + ++ ++ NP W +P I + Sbjct: 323 DRIWVDLTDYKVHTHLNGETQSMR--VVIGKPARKTPVFYGKMTYMVTNPTWRVPHRIAR 380 Query: 253 KDMMALLRQDPQYLKDNNIHMI---DEKGKEVFVEEVDWNSPEPP--NFIFRQDPGKINA 307 ++++ ++++P YL + + K++ ++W + + ++ F Q+ NA Sbjct: 381 ENLLPKIKENPDYLAKHGYKVFANWSASAKQLDPTTINWKAIDQSKLSYRFEQNADDGNA 440 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K F ++N+ Y+HDTP LF V R +SGCVR+ + + LL+ + + + Sbjct: 441 LGLYKFMFPNKNDIYLHDTPAKHLFKEVDRAYSSGCVRLEHPDEFAELLLEGSDSEDK-- 498 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + E + + +T + L +PV+ VY + + + +FR+D+Y D + Sbjct: 499 MNEAMNSGETKVITLPQYLPVYLVYFTVVPNDNGMPEFRNDVYKRDKL 546 >gi|288957909|ref|YP_003448250.1| peptidoglycan-binding domain 1 protein [Azospirillum sp. B510] gi|288910217|dbj|BAI71706.1| peptidoglycan-binding domain 1 protein [Azospirillum sp. B510] Length = 434 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 97/312 (31%), Positives = 157/312 (50%), Gaps = 11/312 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + LG+S V RL +RL+ G L P+ ++ F A ++ AVK FQ+ + P G+V + T Sbjct: 84 MKLGSSGERVGRLAQRLVELGLL-PADKVAELFTADIDHAVKAFQLAQRMKPDGLVGAGT 142 Query: 162 LEAMN-VPVDLR--IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 A++ P + +RQ V + + + ++VN+ + V G+ L Sbjct: 143 RAALDRTPAEAAALMRQSAVAMRSFRDTAPDNV----LVVNLTDQTTTLVRGGEEELTMR 198 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 IVGR R+TP+L RI I+ NP W +P +++++D + +LR N I +D G Sbjct: 199 AIVGRPSRETPLLTDRITHIIVNPTWTVPPTVLKEDKLPMLRAKGTPGIQNAIVYLD--G 256 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 +EV E VDW+ P Q PG NA+ + + + Y+H T EP LF +R Sbjct: 257 QEVAPETVDWHDVTPGRVRIVQQPGNHNALGRFRFNLTNPYDIYLHGTNEPRLFARELRS 316 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 +SGCVR+ + L LL+ + + + I+ ++ ++ VKL T +PV FVY A Sbjct: 317 ISSGCVRLEDPRRLAELLLQGS-SVTPERIDRMLDKQQPQWVKLPTPMPVQFVYWIATVE 375 Query: 399 KDSIIQFRDDIY 410 D ++ DIY Sbjct: 376 ADGAVRLHPDIY 387 >gi|148978885|ref|ZP_01815205.1| hypothetical protein VSWAT3_22280 [Vibrionales bacterium SWAT-3] gi|145962083|gb|EDK27369.1| hypothetical protein VSWAT3_22280 [Vibrionales bacterium SWAT-3] Length = 519 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/289 (30%), Positives = 147/289 (50%), Gaps = 18/289 (6%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 FD ++ A K FQ HG+ G++ T++ +N+ D R+ L +N R + + L Sbjct: 238 FDRDLQIATKAFQRMHGITADGIIGPDTIKWINMGFDDRLTSLALNAERARLWPRNRDSL 297 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P+ ++ E+G+ S V+VGR R+TP+L +++ ++ NP W +P I+ K Sbjct: 298 --IVVNVPSFDMKYWEDGEEVFESKVVVGRKSRKTPLLEIKLDSVILNPTWNVPWKIMVK 355 Query: 254 DMMALLRQDPQYLKDNNIHMID--EKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++ D YL+ +N +ID + V E+DW + +F + RQ G NA+ Sbjct: 356 DILPKVKADESYLETHNFQVIDGWRSMETVDTTEIDWQTINFNSFPYRMRQQAGSSNALG 415 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL----KDTPTWSR 365 K ++ Y+HDTP LFN+ R +SGC+RV + +L L K P S Sbjct: 416 LYKFNTPNKRAIYLHDTPSKSLFNDDFRAYSSGCIRVEHAEELAELLFATKVKKVPNQSD 475 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 T V+L +PVH +Y + ++ IQ+R DIY D Sbjct: 476 -------DLAPNTKVRLKKRIPVHIIYQTVLFGEEG-IQYRGDIYQYDK 516 >gi|320156749|ref|YP_004189128.1| L,D-transpeptidase YcbB [Vibrio vulnificus MO6-24/O] gi|319932061|gb|ADV86925.1| L,D-transpeptidase YcbB [Vibrio vulnificus MO6-24/O] Length = 518 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 147/291 (50%), Gaps = 18/291 (6%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D +E AVK FQ HGL G+V TL+ +N+ R+ + +N R + E++ L Sbjct: 232 YDTQLELAVKQFQKMHGLTQDGVVGPITLKWLNMTPAQRLHSMALNSERSRLWPEERDLL 291 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 VLVN+P ++ G+ S V+VGR R+TPI+ +++ ++ NP W +P++I+ K Sbjct: 292 --VLVNVPGYEMKFWYKGEEIFESKVVVGRKSRKTPIMVGKMDGVVLNPVWNVPKTIMVK 349 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFV--EEVDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++ D +L NI +++ + V + +DW +F + RQ G NA+ Sbjct: 350 DILPKVKYDQSFLTKQNIEIVEGWDSQTAVNPQTIDWTKVSLKSFPYKMRQLAGDKNALG 409 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K ++ ++HDTP LF R +SGCVRV+N + LLK +E Sbjct: 410 LYKFNIPNKRAIFLHDTPSKSLFQEDSRAFSSGCVRVQNADQFALQLLKTQG------LE 463 Query: 370 E-----VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 E + T + L +PVH +Y + W + + +RDDIY D V Sbjct: 464 EELSNLATRQEANTMIPLKRRIPVHIIYQTVWFEGEE-LNYRDDIYQYDLV 513 >gi|333008910|gb|EGK28370.1| putative peptidoglycan binding domain protein [Shigella flexneri K-272] gi|333020220|gb|EGK39490.1| putative peptidoglycan binding domain protein [Shigella flexneri K-227] Length = 550 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/240 (35%), Positives = 128/240 (53%), Gaps = 8/240 (3%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 309 PAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRL 368 Query: 186 L-LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L E G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 369 LPTELSTG---IMVNIPAYSLLYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 425 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQ 300 +P ++ +KD++ +R DP YL+ + ++ ++ +VDW++ N F F+Q Sbjct: 426 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 485 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 486 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 545 >gi|163759687|ref|ZP_02166772.1| hypothetical protein HPDFL43_10047 [Hoeflea phototrophica DFL-43] gi|162283284|gb|EDQ33570.1| hypothetical protein HPDFL43_10047 [Hoeflea phototrophica DFL-43] Length = 619 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 137/283 (48%), Gaps = 8/283 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + VK FQ GL P G+V +T AM + +I ++++ + R + L + Sbjct: 327 YDEELVQLVKDFQKELGLKPDGVVGPATRRAMVGITNADKIEKVRLAMER-ARWLPGVLA 385 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 R V +N PA + GK L V+VG+ QT I + FNPYW +P+SII Sbjct: 386 SRRVFINQPAYTASYYNGGKQELSMRVVVGKRSNQTYFFDDEIELVEFNPYWGVPQSIIF 445 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI-FRQDPGKINAMAST 311 +M+ LR DP YL D + + + GK V V+W++ + + RQ PG NA+ Sbjct: 446 NEMVPKLRNDPGYL-DRSGYEVTIGGKRVSSSNVNWSAVGAGSRVGVRQRPGSSNALGEL 504 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 KI F + + YMHDTP LF R + GC+R+++ + +L T I Sbjct: 505 KIMFPNSHAIYMHDTPSKSLFERDTRAFSHGCIRLQDPRAMAAKVLGTTVE----DIGSY 560 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + PV + +PVH Y +AW + + + DIYG D Sbjct: 561 IAGGQHKPVDVPENIPVHVAYFTAWPNETGAVSYYADIYGRDG 603 >gi|13470744|ref|NP_102313.1| hypothetical protein mll0533 [Mesorhizobium loti MAFF303099] gi|14021487|dbj|BAB48099.1| mll0533 [Mesorhizobium loti MAFF303099] Length = 626 Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 83/280 (29%), Positives = 145/280 (51%), Gaps = 18/280 (6%) Query: 142 VKLFQMRHGLDPSGMVDSST--LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 +K Q++ G+ G++ T L A D R+ ++QV L ++ L +G V +N Sbjct: 341 IKAVQVKEGMKGDGVIGPRTVALLAGTSKAD-RLLKVQVALEELR-WLPSDLGSPRVFIN 398 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 PA + ++NG+ L++ V+VGRV QT + +I ++ F+PYW +P+SII +M+ L Sbjct: 399 QPAFTASYIDNGEEKLKTRVVVGRVTNQTAFFYDQIKQVDFHPYWGVPQSIIVNEMLPRL 458 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDW-----NSPEPPNFIFRQDPGKINAMASTKIE 314 R DP YL + D +GK + V+W N P + RQ P + NA+ KI Sbjct: 459 RSDPGYLDRAGYEVTDSRGKRIPSSAVNWGAYGANIP----YSVRQQPSEANALGELKIL 514 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 F +++ YMHDTP+ F +R + GCVR+++ + +L + + + E +K Sbjct: 515 FPNKHAIYMHDTPQKSFFKQDMRALSHGCVRLQDPRGMAAAVLGTSVDY----VAEKLKH 570 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +T + ++PV+ Y +AW +++ D+Y D+ Sbjct: 571 GHSTE-DVTRKIPVYVAYFTAWPDMSGKVEYFSDVYDRDS 609 >gi|269967085|ref|ZP_06181153.1| putative amidase [Vibrio alginolyticus 40B] gi|269828344|gb|EEZ82610.1| putative amidase [Vibrio alginolyticus 40B] Length = 477 Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 91/306 (29%), Positives = 153/306 (50%), Gaps = 8/306 (2%) Query: 114 LRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 L ER+ I G D+ ++ +D +E A+K FQ HGL G++ +T+ +N R Sbjct: 173 LIERMEIVGVDVSYLDLVTEEYDEQLELAIKEFQRIHGLKEDGVIGPNTIRWINFSPQER 232 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + L +N R + +++ + V VN+P + +G+ S V+VGR R+TPI+ Sbjct: 233 LHLLALNSERSRIWSKERDNV--VFVNVPGYEVTYWHDGQPLFESKVVVGRASRKTPIMS 290 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNS 290 ++ ++ NP W +P +I+ KD++ ++++P YL ++NI +I ++ ++W + Sbjct: 291 VALDSVILNPTWNVPWTIMVKDIIPKVKRNPMYLINHNIQIIRSWTSNEIIDPTTINWAT 350 Query: 291 PEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 P F + RQ G NA+ K + Y+HDTP LF R +SGCVRV + Sbjct: 351 VNPRTFPYRMRQASGLQNALGLYKFNMPNPQAIYLHDTPSKNLFEQDRRAFSSGCVRVEH 410 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 L L K R + R T V L + VH +Y +AW ++ + +RDD Sbjct: 411 ADQLAELLFKTQGLEERLAKKRESSRRSNTSVPLGERIQVHIIYQTAWL-EEGTLYYRDD 469 Query: 409 IYGLDN 414 IY D+ Sbjct: 470 IYKYDH 475 >gi|188995993|ref|YP_001930244.1| Peptidoglycan-binding domain 1 protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931060|gb|ACD65690.1| Peptidoglycan-binding domain 1 protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 506 Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 91/309 (29%), Positives = 157/309 (50%), Gaps = 14/309 (4%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V++LR+ L I G + + V D +ES VK FQ L+ G++ TL +N P++ Sbjct: 194 VKKLRQLLYIYGFYNGNTNSDVYDDELLES-VKRFQESRNLEADGIIGVKTLSELNRPLN 252 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD----R 226 I +++N+ + + L E + + +NIP+ L+ EN L + VIVG+ R Sbjct: 253 ELIDIIKINMEKYRWLPEN-LAENRIEINIPSFELKYYENDIEVLSTEVIVGKNYEEDFR 311 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 TPI + +I +I NPYW +P+ I KD++ ++ +P++L+D + G+EV +++ Sbjct: 312 PTPIYYGKIEKITLNPYWYVPKKIAAKDILKKIKSNPRFLEDFGFKVF-YNGQEVDYKKI 370 Query: 287 DWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 +W NF F Q PG N + +I F + Y+HDTP LF R +SGC+ Sbjct: 371 NWRKYNESNFNFTLIQSPGDKNFLGRIRITFSNPFQVYLHDTPFKELFKQKRRAFSSGCI 430 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQ 404 R+ + + L ++L + I + + KT + + + V+ Y +A D+I Sbjct: 431 RINDALSLTSYILNK----DKNEIVNFINSNKTLDLVPSKNIYVYIFYFTALVKNDTIY- 485 Query: 405 FRDDIYGLD 413 F +D+Y D Sbjct: 486 FYEDLYNFD 494 >gi|91227204|ref|ZP_01261663.1| putative amidase [Vibrio alginolyticus 12G01] gi|91188732|gb|EAS75020.1| putative amidase [Vibrio alginolyticus 12G01] Length = 513 Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 91/306 (29%), Positives = 153/306 (50%), Gaps = 8/306 (2%) Query: 114 LRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 L ER+ I G D+ ++ +D +E A+K FQ HGL G++ +T+ +N R Sbjct: 209 LIERMEIVGVDVSYLDLVTEEYDEQLELAIKEFQRIHGLKEDGVIGPNTIRWINFSPQER 268 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + L +N R + +++ + V VN+P + +G+ S V+VGR R+TPI+ Sbjct: 269 LHLLALNSERSRIWSKERDNV--VFVNVPGYEVTYWHDGQPLFESKVVVGRASRKTPIMS 326 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNS 290 ++ ++ NP W +P +I+ KD++ ++++P YL ++NI +I ++ ++W + Sbjct: 327 VALDSVILNPTWNVPWTIMVKDIIPKVKRNPMYLINHNIQIIRSWTSNEIIDPTTINWAT 386 Query: 291 PEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 P F + RQ G NA+ K + Y+HDTP LF R +SGCVRV + Sbjct: 387 VNPRTFPYRMRQASGLQNALGLYKFNMPNPQAIYLHDTPSKNLFEQDRRAFSSGCVRVEH 446 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 L L K R + R T V L + VH +Y +AW ++ + +RDD Sbjct: 447 ADQLAELLFKTQGLEERLAKKRESSRRSNTSVPLGERIQVHIIYQTAWL-EEGTLYYRDD 505 Query: 409 IYGLDN 414 IY D+ Sbjct: 506 IYKYDH 511 >gi|256820616|ref|YP_003141895.1| ErfK/YbiS/YcfS/YnhG family protein [Capnocytophaga ochracea DSM 7271] gi|256582199|gb|ACU93334.1| ErfK/YbiS/YcfS/YnhG family protein [Capnocytophaga ochracea DSM 7271] Length = 571 Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 100/324 (30%), Positives = 159/324 (49%), Gaps = 21/324 (6%) Query: 105 GNSSVSVQRLRERLIISG-----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G + V+ LR L G +DP + D+ + A+K FQ +GL P G + Sbjct: 244 GYTDPEVESLRNALAKKGFGSVPKIDPQE-----VDSTLIWALKRFQRSNGLIPDGSLGI 298 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 TL +N+ + L++N+ R++ + +G Y++VNIP L + ++ V Sbjct: 299 QTLNRLNMNKARQRDLLRLNMERMR-VFNNDLGDDYIIVNIPDYKLFLYHKDSLIYQTKV 357 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM--ALLRQDPQYLKDNNIHMIDEK 277 +VGR TPI I I F P W +P+SII+K+M+ LL++DP+ K+ M E Sbjct: 358 VVGRAQSSTPIFTDSIRSIEFRPTWSVPQSIIRKEMIPQMLLQEDPERYKNRGYTMY-EN 416 Query: 278 GKEVFVEEVDWNSP--EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 GK + EVDW +P F F + P + N++ K + + Y+HDTP LF Sbjct: 417 GKVIDPLEVDWTNPLVHKRAFYFVEAPSERNSLGLVKFLLNNNMSIYLHDTPSKYLFERE 476 Query: 336 VRFETSGCVRVRNIIDLDVWLLK---DTPTWSRYHIEEVVKTRKTTP--VKLATEVPVHF 390 R + GCVRV+N L +LLK D +W+ +++ + K VKL T+ ++ Sbjct: 477 QRALSHGCVRVQNPSQLAYYLLKNEGDGKSWTEEKVKDFMNNNKRNQYRVKLNTKYMINI 536 Query: 391 VYISAWSPKDSIIQFRDDIYGLDN 414 +Y + K ++DIY LDN Sbjct: 537 LYYTISVDKKGEATIKNDIYDLDN 560 >gi|325104437|ref|YP_004274091.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter saltans DSM 12145] gi|324973285|gb|ADY52269.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter saltans DSM 12145] Length = 493 Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 93/313 (29%), Positives = 150/313 (47%), Gaps = 22/313 (7%) Query: 122 GDLDPSKGLSVAFDA-----YVESAVKLFQMR-----HGLDPSGMVDSSTLEAMNVPVDL 171 G ++P K FD+ ++ES L QM L P V ++ M + Sbjct: 166 GAINPKKLYGRYFDSIERPDFIESQKMLEQMDLISFLRDLQPKNAVYTALQAEMQKGLSG 225 Query: 172 RIRQ-LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV------ 224 ++ + +NL R++ + +++LVNIP L +N K L V VG Sbjct: 226 DQKERIFLNLERLRWKISD-FPEKFILVNIPEFKLRLYDNHKEALAMKVCVGATANPPYS 284 Query: 225 ----DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 + +TP+L I+R+ NP W IP+SI K++M L ++P YL ++N+ D+ G Sbjct: 285 KNGQNHETPVLSGTIDRMQINPVWNIPKSIAGKEIMTKLVENPSYLDESNMVAYDKSGAA 344 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 V + VDW+S ++ F+Q+PG N++ K FY+ Y+HDTP +FN R + Sbjct: 345 VNAQSVDWSSASVDDYSFKQNPGSDNSLGRVKFIFYNPYAIYLHDTPAKQMFNEKNRAVS 404 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKD 400 GCVRV + L +LL D + E ++ VK+ V V+ Y +A++ Sbjct: 405 HGCVRVEQPLKLVDFLLNDQKESEKVKSEITGSDNESRWVKVKDPVKVYLAYYTAFADDK 464 Query: 401 SIIQFRDDIYGLD 413 I + DD+YG D Sbjct: 465 DGITWVDDVYGYD 477 >gi|119383985|ref|YP_915041.1| peptidoglycan binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119373752|gb|ABL69345.1| Peptidoglycan-binding domain 1 protein [Paracoccus denitrificans PD1222] Length = 535 Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 95/346 (27%), Positives = 159/346 (45%), Gaps = 7/346 (2%) Query: 80 KAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 +A+A +++ G P + G S +V LR RL G G + +D + Sbjct: 181 QALARQSQLVAPGDAPRVAEGLWREGTSDPAVAALRVRLASVGFAAAPMGSPLTYDGALA 240 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 AV +Q GL G+ T+ +N + V L R++ + + R+V VN Sbjct: 241 QAVAAYQKAAGLPADGVAGPRTVARLNRGTGPEAEAILVALERMRWMRGHDLNARHVWVN 300 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQ--TPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 +P + ENG+ + V++G+ +R+ TP + ++ NP W +PRSI K+ + Sbjct: 301 LPEFNARIYENGREVFETRVVIGKANREFETPEFSETMKYMVVNPRWNVPRSITVKEYLP 360 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEF 315 L+ + + ++ ++D G + + +D+ F +R Q P NA+ K F Sbjct: 361 RLQANRHAV--GHLDVVDGAGNVIARDRIDFRKYSAKTFPYRMRQKPSDDNALGQVKFMF 418 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 + N Y+HDTP LFN R + GC+RV +DL LLK + +K+ Sbjct: 419 PNPWNIYLHDTPTKHLFNQSSRAYSHGCIRVGRPVDLAHELLKGQVESPEAVFSKALKSG 478 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-VHVGII 420 + T + L VPVH VY +A+ + I+ DIYG D VH ++ Sbjct: 479 RETYLNLRPPVPVHLVYFTAFPDESGQIRRFPDIYGRDALVHAALV 524 >gi|332878616|ref|ZP_08446336.1| peptidoglycan binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683517|gb|EGJ56394.1| peptidoglycan binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 568 Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 94/319 (29%), Positives = 161/319 (50%), Gaps = 13/319 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G ++ +++LR+ L G ++ D+ + V+ FQ GL P G++ TL Sbjct: 241 GYTAPVIEKLRKGLKQKGFEAIAEADPQTVDSTLIRTVQRFQESKGLTPDGVLGKQTLYF 300 Query: 165 MNVPVDLRIRQL-QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 +N+ D R R L ++N+ R++ + +G Y +VNIP L E V + V+VG+ Sbjct: 301 INMN-DTRTRDLLKLNMERMR-VFNNYLGDHYAIVNIPDFKLLLFEKDSVLFETRVVVGK 358 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL--RQDPQYLKDNNIHMIDEKGKEV 281 TPI I + F P W +P+SII+K+M+ + + +P+ K+ M E GK+V Sbjct: 359 SATSTPIFTDTIQYVEFRPTWSVPQSIIKKEMIPQIVSQANPEKYKNRGYTMY-ENGKKV 417 Query: 282 FVEEVDWNSP--EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 +V+WN P F F + P N++ K + + Y+HDTP F+ R Sbjct: 418 DPTQVNWNDPAVHKRGFYFVEAPSANNSLGLVKFILTNGMSIYLHDTPSKHFFDRDYRAL 477 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP-----VKLATEVPVHFVYIS 394 + GC+RV+N +L LLK+ + + + IE+V + + T + L T+ V+ +Y + Sbjct: 478 SHGCIRVQNPSELAYHLLKNEESQTPWTIEKVTEAMQNTKRSQYRIALKTKYKVNIIYYT 537 Query: 395 AWSPKDSIIQFRDDIYGLD 413 AW + + ++DIY LD Sbjct: 538 AWVDNNGEVVIKNDIYELD 556 >gi|152978757|ref|YP_001344386.1| hypothetical protein Asuc_1085 [Actinobacillus succinogenes 130Z] gi|150840480|gb|ABR74451.1| conserved hypothetical protein [Actinobacillus succinogenes 130Z] Length = 494 Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 141/259 (54%), Gaps = 8/259 (3%) Query: 159 SSTLEAMN-VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 + L ++N VPV+ + L +N R++ + + G + VNIP+ L NG++ L S Sbjct: 227 AGNLNSVNKVPVNDNYK-LAINAQRLRIIPDFYNG---IFVNIPSYQLNYYRNGRLTLNS 282 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 VIVG+ +R+TP+++S+++ ++ NP W P +I +D++ +++DP YL + +ID K Sbjct: 283 RVIVGKNNRRTPVMYSKLSNVVVNPPWNAPTRLINEDIIPKVKRDPNYLVRHGYSIIDGK 342 Query: 278 GKEVFVEEVDWNS-PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 G V ++W S + RQ G +A+ K S + Y+HDTP LFNN Sbjct: 343 GNTVNPYNINWGSIGNKFPYRLRQAAGDNSALGRYKFNMPSSDAIYLHDTPNHALFNNKN 402 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGCVRV L LL + WS + V+ ++KTT + ++ PV+ Y++ W Sbjct: 403 RALSSGCVRVDKSDQLASILLSEA-GWSSDKKQRVLNSKKTTSAPILSDNPVYLYYVTTW 461 Query: 397 SPKDSIIQFRDDIYGLDNV 415 ++ +Q DIYG D V Sbjct: 462 V-ENGKVQSVPDIYGYDRV 479 >gi|315223727|ref|ZP_07865577.1| peptidoglycan binding domain protein [Capnocytophaga ochracea F0287] gi|314946302|gb|EFS98301.1| peptidoglycan binding domain protein [Capnocytophaga ochracea F0287] Length = 571 Score = 135 bits (341), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 98/324 (30%), Positives = 160/324 (49%), Gaps = 21/324 (6%) Query: 105 GNSSVSVQRLRERLIISG-----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G + V+ LR L G ++DP + D+ + A+K FQ +GL P G + Sbjct: 244 GYTDPEVESLRNALAKKGFRSVPEIDPQE-----VDSTLIWALKRFQRSNGLIPDGSLGI 298 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 TL +N+ + L++N+ R++ + +G Y++VNIP L + ++ V Sbjct: 299 QTLNRLNMNKARQRDLLRLNMERMR-VFNNDLGDDYIIVNIPDYKLFLYHKDSLIYQTKV 357 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM--ALLRQDPQYLKDNNIHMIDEK 277 +VGR TPI I + F P W +P+SII+K+M+ LL++DP+ K+ M E Sbjct: 358 VVGRAQTSTPIFTDSIRSVEFRPTWSVPQSIIKKEMIPQMLLQEDPEKYKNRGYTMY-EN 416 Query: 278 GKEVFVEEVDWNSP--EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 G+ + EVDW +P F F + P + N++ K + + Y+HDTP LF Sbjct: 417 GRVIDPLEVDWTNPLVHKRAFYFVEAPSERNSLGLVKFLLNNNMSIYLHDTPSKYLFERE 476 Query: 336 VRFETSGCVRVRNIIDLDVWLLK---DTPTWSRYHIEEVVKTRKTTP--VKLATEVPVHF 390 R + GCVRV+N L +LLK D +W+ +++ + K VKL T+ ++ Sbjct: 477 QRALSHGCVRVQNPSQLAYYLLKNEGDGKSWTEEKVKDFMNNNKRNQYRVKLNTKYMINI 536 Query: 391 VYISAWSPKDSIIQFRDDIYGLDN 414 +Y + K ++DIY LDN Sbjct: 537 LYYTISVDKKGEATIKNDIYDLDN 560 >gi|254230281|ref|ZP_04923670.1| putative peptidoglycan binding domain protein [Vibrio sp. Ex25] gi|151937178|gb|EDN56047.1| putative peptidoglycan binding domain protein [Vibrio sp. Ex25] Length = 345 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 142/285 (49%), Gaps = 7/285 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D +E AVK FQ HGL G++ +T+ +N R+ L +N R + + + + Sbjct: 62 YDEELELAVKEFQRIHGLKEDGVIGPNTIRWINFSPQERLHLLALNSERSRIWSKDRDNV 121 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 V VN+P + +G+ S V+VGR R+TPI+ ++ ++ NP W +P +I+ K Sbjct: 122 --VFVNVPGYEVTYWHDGQPLFESKVVVGRASRKTPIMSGTLDSVILNPTWNVPWTIMVK 179 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++P YL ++NI +I ++ ++W + P F + RQ G NA+ Sbjct: 180 DIIPKVKRNPMYLINHNIQIIRSWTSNEIIDPTTINWATVNPRTFPYRMRQASGLHNALG 239 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K + Y+HDTP LF R +SGCVRV + L L K R + Sbjct: 240 LYKFNMPNPQAIYLHDTPSKNLFERDRRAFSSGCVRVEHADQLAELLFKTQGLEERLAKK 299 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 R T V L + VH +Y +AW ++ + +RDDIY D+ Sbjct: 300 RESTRRSNTSVPLGERIQVHIIYQTAWL-EEGTLYYRDDIYKYDH 343 >gi|165975577|ref|YP_001651170.1| hypothetical protein APJL_0122 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875678|gb|ABY68726.1| hypothetical protein APJL_0122 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 521 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 130/243 (53%), Gaps = 10/243 (4%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G++ L+S VIVGR DR+TP++HS+ Sbjct: 268 KLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRDDRRTPVMHSK 324 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW----NS 290 ++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ V+W NS Sbjct: 325 LSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPRSVNWAQYVNS 384 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 P + RQ G +A+ K S + Y+HDTP LF R +SGCVRV Sbjct: 385 KNLP-YRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSSGCVRVERSD 443 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 DL LLK+ WS ++V+ ++KTT + ++ PV+ Y++ W + R DIY Sbjct: 444 DLASILLKEA-GWSMDKKQKVLASQKTTSANIPSDNPVYVYYVAPWVENGKVYTLR-DIY 501 Query: 411 GLD 413 D Sbjct: 502 EFD 504 >gi|262393898|ref|YP_003285752.1| L,D-transpeptidase YcbB [Vibrio sp. Ex25] gi|262337492|gb|ACY51287.1| L,D-transpeptidase YcbB [Vibrio sp. Ex25] Length = 513 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/285 (30%), Positives = 142/285 (49%), Gaps = 7/285 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D +E AVK FQ HGL G++ +T+ +N R+ L +N R + + + + Sbjct: 230 YDEELELAVKEFQRIHGLKEDGVIGPNTIRWINFSPQERLHLLALNSERSRIWSKDRDNV 289 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 V VN+P + +G+ S V+VGR R+TPI+ ++ ++ NP W +P +I+ K Sbjct: 290 --VFVNVPGYEVTYWHDGQPLFESKVVVGRASRKTPIMSGTLDSVILNPTWNVPWTIMVK 347 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++P YL ++NI +I ++ ++W + P F + RQ G NA+ Sbjct: 348 DIIPKVKRNPMYLINHNIQIIRSWTSNEIIDPTTINWATVNPRTFPYRMRQASGLHNALG 407 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K + Y+HDTP LF R +SGCVRV + L L K R + Sbjct: 408 LYKFNMPNPQAIYLHDTPSKNLFERDRRAFSSGCVRVEHADQLAELLFKTQGLEERLAKK 467 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 R T V L + VH +Y +AW ++ + +RDDIY D+ Sbjct: 468 RESTRRSNTSVPLGERIQVHIIYQTAWL-EEGTLYYRDDIYKYDH 511 >gi|302382528|ref|YP_003818351.1| ErfK/YbiS/YcfS/YnhG family protein [Brevundimonas subvibrioides ATCC 15264] gi|302193156|gb|ADL00728.1| ErfK/YbiS/YcfS/YnhG family protein [Brevundimonas subvibrioides ATCC 15264] Length = 521 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/337 (27%), Positives = 152/337 (45%), Gaps = 31/337 (9%) Query: 85 YQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV----- 138 Y+ I+ GGWP + G+S V + RL+ GD+ + G + V Sbjct: 183 YRRIIRNGGWPRFRAGASIEPGSSDTRVPIIITRLVAEGDMSEADGARLTAQGLVYGPEL 242 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 E+AV+ FQ RHGL P G + + T ++ + R RQ+ +NL R ++ L++++ + V Sbjct: 243 ETAVRSFQARHGLAPDGRIGAGTQSSLGASAEDRARQIALNLER-RRWLKRELSPERIEV 301 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 N AA + ++G+ + V+ G QTP L ++ NP W +P I +++ + Sbjct: 302 NTAAAIMVYWKDGRPVHSNRVVCGAPATQTPSLEKPFASVVANPPWYVPAGIARRE---I 358 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR 318 L + P YL N+++ N Q G A+ K E Sbjct: 359 LPRGPAYLASQNMYV--------------------QNGTVIQRAGPTAALGYVKFELRDS 398 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 ++HDTP FN R + GCVRV+N ++ LL PT + +TR+T Sbjct: 399 YAIFLHDTPSKAAFNLSTRQRSHGCVRVQNAVEFARILLSPDPTLL-SQFDTAQQTRETK 457 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 ++ E+ V +Y +A+ + FR+DIY D V Sbjct: 458 RIQTGREISVRLLYWTAFVDGQGRVAFREDIYRRDQV 494 >gi|322515092|ref|ZP_08068099.1| hypothetical protein HMPREF0027_1851 [Actinobacillus ureae ATCC 25976] gi|322118898|gb|EFX91080.1| hypothetical protein HMPREF0027_1851 [Actinobacillus ureae ATCC 25976] Length = 530 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 131/243 (53%), Gaps = 10/243 (4%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G++ L+S VIVGR DR+TP+++S+ Sbjct: 277 KLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRDDRRTPVMYSK 333 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW----NS 290 ++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ V+W NS Sbjct: 334 LSNVVVNPPWNIPPTILTKDIIPKLARNPGFAGSAGYEIFDRKGNKINPRSVNWSQYVNS 393 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 P + RQ G +A+ K S + Y+HDTP LF R +SGCVRV Sbjct: 394 KNIP-YRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSSGCVRVERSD 452 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 DL LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW+ + DIY Sbjct: 453 DLASILLKEA-GWSMDRKQKVLASQKTTSANIRSDNPVYLYYVTAWAENGKVYTL-PDIY 510 Query: 411 GLD 413 D Sbjct: 511 KFD 513 >gi|257465088|ref|ZP_05629459.1| hypothetical protein AM202_01165 [Actinobacillus minor 202] gi|257450748|gb|EEV24791.1| hypothetical protein AM202_01165 [Actinobacillus minor 202] Length = 537 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/291 (30%), Positives = 145/291 (49%), Gaps = 19/291 (6%) Query: 137 YVESAVKLFQMRHG--LDPSGMVDSSTLEAMNVPVD-------LRIRQLQVNLMRIKKLL 187 Y E+ +LF M G + + PVD +L +N R++ + Sbjct: 237 YQETVQRLFAMSPGASISTKKATKGKSKNVAATPVDEVAATGSSSFYKLALNAQRLRIIP 296 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 G + VNIP+ L +G++ L+S VIVGR DR+TP+++S+++ ++ NP W +P Sbjct: 297 SFNNG---IFVNIPSYQLYYFRDGQLALQSKVIVGREDRRTPVMYSKLSNVVVNPPWNVP 353 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW----NSPEPPNFIFRQDPG 303 SI+ KD++ L ++P + ++D G +V V+W N+ P + RQ G Sbjct: 354 TSILTKDIVPKLARNPGIADSLSYEILDGSGNKVNPRSVNWSQYLNAKSIP-YRIRQKAG 412 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 +A+ K S + Y+HDTP LF+ R +SGCVRV +L LLK+ W Sbjct: 413 DDSALGRYKFNMPSSDAIYLHDTPNHGLFSRTDRALSSGCVRVAKSSELASILLKEA-GW 471 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 S + V+ ++KTT + ++ PV+ Y+++W + DIY LDN Sbjct: 472 SAEKQQSVLASKKTTSANIRSDNPVYLYYVTSWVEGGKVYTL-PDIYKLDN 521 >gi|118589141|ref|ZP_01546548.1| hypothetical protein SIAM614_13853 [Stappia aggregata IAM 12614] gi|118438470|gb|EAV45104.1| hypothetical protein SIAM614_13853 [Stappia aggregata IAM 12614] Length = 656 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/275 (29%), Positives = 139/275 (50%), Gaps = 8/275 (2%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDL-RIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 VK FQ L P G++ +T+ AM + +I ++++ + R + L EQ +G R V +N Sbjct: 367 VKAFQKEAKLTPDGIIGKNTINAMVGETNAAKIAKVELAMERSRWLPEQ-LGERKVFINQ 425 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 A + G+ L V+VG+ QT + +I + +NPYW +P SII +M+ L Sbjct: 426 AAFTATYTAPGEDPLSMRVVVGKKSNQTNFFYDKIQIVEYNPYWGVPYSIIVNEMLPKLA 485 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMASTKIEFYSR 318 +DP YL + G+++ VDW + + + RQ PG NA+ KI F ++ Sbjct: 486 KDPSYLDRAGYEVTTPGGRQISSSAVDWYAVASKQQSVNVRQYPGSSNALGEVKILFPNK 545 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 ++ YMHDTP LF +R + GC+R+++ + +L S+ ++ + + Sbjct: 546 HHIYMHDTPAKSLFKKDMRAYSHGCIRLQDPKAMAAAVLGK----SKDYVSSRISGGQNE 601 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 ++ ++PV+ Y +AW +D I F D+Y D Sbjct: 602 QERVTGDIPVYVSYFTAWPEQDGTIGFYTDVYDRD 636 >gi|213963732|ref|ZP_03391982.1| putative peptidoglycan binding domain protein [Capnocytophaga sputigena Capno] gi|213953612|gb|EEB64944.1| putative peptidoglycan binding domain protein [Capnocytophaga sputigena Capno] Length = 563 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 93/327 (28%), Positives = 158/327 (48%), Gaps = 10/327 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + P + G ++ V +LR L G + + D+ + V+ FQ +GL G Sbjct: 228 DFPAKDFVYGYTAPIVVQLRNSLKQKGFEAAPEIEAQMVDSTLIRTVQRFQKSNGLTADG 287 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 ++ TL +N+ LQ+N+ R++ + +G Y LVNIP L + Sbjct: 288 LLGKQTLYFLNMNKTRERDLLQLNMERMR-VFNNDLGEHYALVNIPDFKLSLFHKDSLQF 346 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL--RQDPQYLKDNNIHM 273 ++ V+VGR + TPI I + F P W +P+SII+K+M+ + + DP+ + M Sbjct: 347 QTRVVVGRTETSTPIFTDTIRYVEFRPTWSVPQSIIKKEMLPQIISQADPEKYQKRGYTM 406 Query: 274 IDEKGKEVFVEEVDWNSP--EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 EKGK+V +DW P F F + P N++ K + + Y+HDTP Sbjct: 407 Y-EKGKKVDPTTIDWTDPSVHKRGFHFVEAPSANNSLGLVKFILTNDMSIYLHDTPSKYF 465 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT----RKTTPVKLATEVP 387 F R + GCVRV+N +L LLK+ T + + +E+V + R + L T+ Sbjct: 466 FQRDDRALSHGCVRVQNPNELAYHLLKNEATETPWTLEKVNEAMNGKRSQYRIALKTKYK 525 Query: 388 VHFVYISAWSPKDSIIQFRDDIYGLDN 414 ++ +Y +A+ ++ + ++DIY LDN Sbjct: 526 INILYYTAFIDENGELTLKNDIYDLDN 552 >gi|15602135|ref|NP_245207.1| hypothetical protein PM0270 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720500|gb|AAK02354.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 515 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/253 (33%), Positives = 133/253 (52%), Gaps = 8/253 (3%) Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 E M+ ++ ++ +N R++ + GL VNIP+ L +GK+ L S VIVG Sbjct: 251 EGMDNDKLAQLYKIAINAQRLRVIPTFDNGL---FVNIPSYQLHYYRDGKLILTSKVIVG 307 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + R+TP+L+S+++ ++ NP W P +I +D++ +R+DP Y+ N +ID KGK + Sbjct: 308 KKARKTPVLYSKLSDVVVNPPWNTPTRLINEDIIPRVRKDPSYIYRNGYTIIDSKGKTID 367 Query: 283 VEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 +DW + F + RQ PG +A+ + K S + Y+HDTP LF + Sbjct: 368 PYTIDWENMTAKKFPYRLRQAPGD-SALGNFKFNMPSSDAIYLHDTPSRGLFAKKDLALS 426 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKD 400 SGCVRV +L LLK+ WS VK+RKT V +A+ PV Y++AW + Sbjct: 427 SGCVRVEKADELASVLLKEA-GWSEERKVNTVKSRKTISVNVASNNPVFLYYVTAWV-NN 484 Query: 401 SIIQFRDDIYGLD 413 DIYG D Sbjct: 485 GKTHTLPDIYGYD 497 >gi|153009554|ref|YP_001370769.1| peptidoglycan-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151561442|gb|ABS14940.1| Peptidoglycan-binding domain 1 protein [Ochrobactrum anthropi ATCC 49188] Length = 668 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/283 (30%), Positives = 139/283 (49%), Gaps = 8/283 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + SA+K +Q G P G++ +TL A+ R + M + L G Sbjct: 375 YDPELVSAIKDYQKLSGSTPDGVIGRNTLSALQGEQSSIKRDRILYSMERLRWLPHDFGT 434 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 RYV+VN PA E E+GK L V++G QT ++++ ++FNP W +PRSII Sbjct: 435 RYVMVNQPAYRAEYFEDGKEKLAMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIILN 494 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAST 311 +M+ + +D YL D N + + GK+V V+W+ + + RQ P NA+ Sbjct: 495 EMLPKVMRDTSYL-DRNGYEVYAGGKKVSASAVNWSAVAAGKAHVGIRQKPSLDNALGEL 553 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 KI F + ++ YMHDTP F+ +R + GC+R+ D+ +L + T +E+ Sbjct: 554 KILFPNAHDIYMHDTPAKSYFSRDMRALSHGCIRLERPRDMAAAVLGTSVT----DLEKY 609 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV Y +AW D I + D+Y D+ Sbjct: 610 F-GKNERGIKVKEPVPVFISYFTAWPEADGKIHYYGDVYDRDS 651 >gi|296531943|ref|ZP_06894738.1| peptidoglycan-binding domain 1 protein [Roseomonas cervicalis ATCC 49957] gi|296267730|gb|EFH13560.1| peptidoglycan-binding domain 1 protein [Roseomonas cervicalis ATCC 49957] Length = 321 Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 85/292 (29%), Positives = 144/292 (49%), Gaps = 7/292 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +DA +E+AV+ +Q H L+ G V T MN P + Q++V + + + G Sbjct: 28 YDAPLEAAVRRWQAAHSLEVDGRVGPMTQRLMNRPAGAVVGQIRVAMDQRRGRGAAAPG- 86 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R + VNIP L ++ + V+VG+V R TP L R+ + FNP W +P ++ Sbjct: 87 RRIEVNIPEFRLRVMDGARQVTAMNVVVGKVARATPPLAVRMTAVQFNPPWGVPERNARE 146 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNF--IFRQDPGKINAM 308 D++ R+DP+ + + + G E V VDW S P F I RQD ++A+ Sbjct: 147 DLLPKFRRDPRAMMEKGFRLFTVVGGERVEVDPMTVDWASVNPQRFPYIVRQDASDVSAL 206 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K + ++ Y+HDTP+ LF R +SGC+R+ ++L +L+ P W+R Sbjct: 207 GRLKFVMPNGDDIYLHDTPDRHLFGRADRALSSGCIRLSQPMELLDLVLEGVPGWNRERA 266 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + + +R+T+ + L PV Y + + + DIYGLD ++ ++ Sbjct: 267 QRALDSRQTSFLSLPRAWPVRLHYDTVVV-EQGQARLLSDIYGLDAAYLRLL 317 >gi|307249325|ref|ZP_07531319.1| hypothetical protein appser4_1390 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858619|gb|EFM90681.1| hypothetical protein appser4_1390 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 521 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 131/243 (53%), Gaps = 10/243 (4%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N+ R++ + G + VNIP+ L +G++ L+S VIVGR DR+TP+++S+ Sbjct: 268 KLALNVQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRDDRRTPVMYSK 324 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW----NS 290 ++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ V+W NS Sbjct: 325 LSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPRSVNWAQYVNS 384 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 P + RQ G +A+ K S + Y+HDTP LF R +SGCVRV Sbjct: 385 KNLP-YRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSSGCVRVERSD 443 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 DL LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW + DIY Sbjct: 444 DLASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTAWVENGKVYTL-PDIY 501 Query: 411 GLD 413 D Sbjct: 502 KFD 504 >gi|254500817|ref|ZP_05112968.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] gi|222436888|gb|EEE43567.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] Length = 658 Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/275 (29%), Positives = 137/275 (49%), Gaps = 8/275 (2%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDL-RIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 VK FQ L G+V +T++AM + +I ++++ + R + L +++G R V +N Sbjct: 369 VKGFQKEAKLTADGIVGKNTIKAMVGETNAAKIAKVELAMER-SRWLPEELGERKVFINQ 427 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PA + + G + V+VG+ QT + +I + +NPYW +P SII +M+ L Sbjct: 428 PAFTATYHQPGTDPMSMRVVVGKKSNQTNFFYDKIEIVEYNPYWGVPYSIIVNEMIPKLA 487 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMASTKIEFYSR 318 +P YL + G++V VDW + + + RQ PG+ NA+ KI F +R Sbjct: 488 ANPSYLDQAGYEVTTPGGRKVSSASVDWYAVANKKKSINVRQYPGRSNALGEVKILFPNR 547 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 ++ YMHDTP LFN R + GC+R+ + + +L + + + + + Sbjct: 548 HHIYMHDTPSKSLFNKDTRAFSHGCIRLHDPKGMAAAVLGKSTDY----VSSRIAAGQNA 603 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 K+ ++PV+ Y +AW D I F D+Y D Sbjct: 604 QEKVTGDIPVYVSYFTAWPEADGSIGFYTDVYDRD 638 >gi|303251945|ref|ZP_07338116.1| hypothetical protein APP2_0272 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247104|ref|ZP_07529156.1| hypothetical protein appser2_1030 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307256146|ref|ZP_07537933.1| hypothetical protein appser10_1510 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307262708|ref|ZP_07544336.1| hypothetical protein appser13_1350 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|302649375|gb|EFL79560.1| hypothetical protein APP2_0272 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856353|gb|EFM88504.1| hypothetical protein appser2_1030 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306865327|gb|EFM97223.1| hypothetical protein appser10_1510 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306871963|gb|EFN03679.1| hypothetical protein appser13_1350 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 521 Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 130/243 (53%), Gaps = 10/243 (4%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G++ L+S VIVGR DR+TP+++S+ Sbjct: 268 KLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRDDRRTPVMYSK 324 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW----NS 290 ++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ V+W NS Sbjct: 325 LSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPRSVNWAQYVNS 384 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 P + RQ G +A+ K S + Y+HDTP LF R +SGCVRV Sbjct: 385 KNLP-YRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSSGCVRVERSD 443 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 DL LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW + DIY Sbjct: 444 DLASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTAWVENGKVYTL-PDIY 501 Query: 411 GLD 413 D Sbjct: 502 KFD 504 >gi|307244929|ref|ZP_07527026.1| hypothetical protein appser1_1410 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253883|ref|ZP_07535735.1| hypothetical protein appser9_1410 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258337|ref|ZP_07540078.1| hypothetical protein appser11_1400 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854094|gb|EFM86302.1| hypothetical protein appser1_1410 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863087|gb|EFM95029.1| hypothetical protein appser9_1410 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867521|gb|EFM99368.1| hypothetical protein appser11_1400 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 521 Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 130/243 (53%), Gaps = 10/243 (4%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G++ L+S VIVGR DR+TP+++S+ Sbjct: 268 KLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRDDRRTPVMYSK 324 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW----NS 290 ++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ V+W NS Sbjct: 325 LSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPRSVNWAQYVNS 384 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 P + RQ G +A+ K S + Y+HDTP LF R +SGCVRV Sbjct: 385 KNLP-YRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSSGCVRVERSD 443 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 DL LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW + DIY Sbjct: 444 DLASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTAWVENGKVYTL-PDIY 501 Query: 411 GLD 413 D Sbjct: 502 KFD 504 >gi|32034588|ref|ZP_00134744.1| COG2989: Uncharacterized protein conserved in bacteria [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207609|ref|YP_001052834.1| hypothetical protein APL_0121 [Actinobacillus pleuropneumoniae L20] gi|126096401|gb|ABN73229.1| hypothetical protein APL_0121 [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 521 Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 130/243 (53%), Gaps = 10/243 (4%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G++ L+S VIVGR DR+TP+++S+ Sbjct: 268 KLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRDDRRTPVMYSK 324 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW----NS 290 ++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ V+W NS Sbjct: 325 LSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPRSVNWAQYVNS 384 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 P + RQ G +A+ K S + Y+HDTP LF R +SGCVRV Sbjct: 385 KNLP-YRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSSGCVRVERSD 443 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 DL LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW + DIY Sbjct: 444 DLASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTAWVENGKVYTL-PDIY 501 Query: 411 GLD 413 D Sbjct: 502 KFD 504 >gi|307260578|ref|ZP_07542270.1| hypothetical protein appser12_1530 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869655|gb|EFN01440.1| hypothetical protein appser12_1530 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 521 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 130/243 (53%), Gaps = 10/243 (4%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G++ L+S VIVGR DR+TP+++S+ Sbjct: 268 KLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRDDRRTPVMYSK 324 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW----NS 290 ++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ V+W NS Sbjct: 325 LSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPRSVNWAQYVNS 384 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 P + RQ G +A+ K S + Y+HDTP LF R +SGCVRV Sbjct: 385 KNLP-YRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSSGCVRVERSD 443 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 DL LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW + DIY Sbjct: 444 DLASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTAWVENGKVYTL-PDIY 501 Query: 411 GLD 413 D Sbjct: 502 KFD 504 >gi|303249825|ref|ZP_07336029.1| hypothetical protein APP6_1233 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251648|ref|ZP_07533553.1| hypothetical protein appser6_1700 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651392|gb|EFL81544.1| hypothetical protein APP6_1233 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860845|gb|EFM92853.1| hypothetical protein appser6_1700 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 521 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 130/243 (53%), Gaps = 10/243 (4%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G++ L+S VIVGR DR+TP+++S+ Sbjct: 268 KLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRDDRRTPVMYSK 324 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW----NS 290 ++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ V+W NS Sbjct: 325 LSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPRSVNWAQYVNS 384 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 P + RQ G +A+ K S + Y+HDTP LF R +SGCVRV Sbjct: 385 KNLP-YRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSSGCVRVERSD 443 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 DL LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW + DIY Sbjct: 444 DLASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTAWVENGKVYTL-PDIY 501 Query: 411 GLD 413 D Sbjct: 502 KFD 504 >gi|260459428|ref|ZP_05807683.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] gi|259034982|gb|EEW36238.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] Length = 628 Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 83/280 (29%), Positives = 144/280 (51%), Gaps = 18/280 (6%) Query: 142 VKLFQMRHGLDPSGMVDSST--LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 +K Q + G+ G++ T L A D R+ ++QV L ++ L +G V +N Sbjct: 343 IKAVQQKEGMKGDGVIGPRTVALLAGTSKAD-RLLKVQVALEELR-WLPSDLGSPRVFIN 400 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 PA + +++G+ L++ ++GR QT + +I ++ F+PYW +P+SII +M+ L Sbjct: 401 QPAFTASYIDDGQEKLKTRAVIGRTTNQTAFFYDQIKQVDFHPYWGVPQSIIVNEMLPRL 460 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDW-----NSPEPPNFIFRQDPGKINAMASTKIE 314 R DP YL + D +GK + V+W N P + RQ P + NA+ KI Sbjct: 461 RNDPGYLDRAGYEVTDSRGKRIPSSAVNWGGYGANIP----YSVRQQPSEANALGELKIL 516 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 F +++ YMHDTP+ F +R + GCVR+++ + +L DT S +I E +K Sbjct: 517 FPNKHAIYMHDTPQKSFFKQDMRALSHGCVRLQDPRGMAAAVL-DT---SVDYIAEKLKH 572 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +T + ++PV+ Y +AW +++ D+Y D+ Sbjct: 573 GHST-QDVTRKIPVYVAYFTAWPDMSGKVEYFGDVYDRDS 611 >gi|217978718|ref|YP_002362865.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] gi|217504094|gb|ACK51503.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] Length = 629 Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 93/317 (29%), Positives = 149/317 (47%), Gaps = 22/317 (6%) Query: 97 LPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 +P P L +G V +R RL + G + L +D V SAV FQ +GL SG Sbjct: 322 IPTGPTLKVGMRDPRVPLIRSRLSLDGREGEPENL--VYDTQVASAVADFQKANGLPGSG 379 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 +++ T+ ++ R+ + M + + + MG + VNIP + +ENG V Sbjct: 380 QLNARTIALLSGGDQSRVEAEILANMERWRWMPRDMGESRIEVNIPDYEVSVIENGAVIS 439 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 ++ V+VG+ D TP+ + + ++ NPYW +P+SII+K+MM + DP YL + Sbjct: 440 QNRVVVGKEDTPTPVFSNTMQFLIVNPYWTVPQSIIRKEMMPKIAADPNYLHRMGYEAVW 499 Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 + GK RQ PG+ NA+ K F + Y+HDTP LF Sbjct: 500 KNGK----------------LGVRQPPGERNALGRIKFMFPNDYAVYLHDTPSRALFEQH 543 Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 R + GCVRV + +L WS +++++ ++ V LA +P+H Y +A Sbjct: 544 KRAFSHGCVRVDDPFRFAQSVLGK--GWSEERVQKLIGGKERY-VHLAKPLPIHLEYFTA 600 Query: 396 WSPKDSIIQFRDDIYGL 412 +Q +DIYG Sbjct: 601 KVDPYGQLQLSEDIYGF 617 >gi|319783599|ref|YP_004143075.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169487|gb|ADV13025.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 629 Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 77/275 (28%), Positives = 140/275 (50%), Gaps = 8/275 (2%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDL-RIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 +K Q + G+ G++ T+ ++ ++ +++V L ++ L +G V +N Sbjct: 344 IKAVQQKAGMKGDGVIGPRTVASLAGTSKADKLLKVEVALEELR-WLPSDLGSPRVFINQ 402 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PA + ++NG+ LR+ V+VGR QT + +I ++ F+PYW +P+SII +M+ LR Sbjct: 403 PAFTASYIDNGEEKLRTRVVVGRTTNQTSFFYDQIKQVDFHPYWGVPQSIIVNEMLPRLR 462 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNS-PEPPNFIFRQDPGKINAMASTKIEFYSRN 319 DP YL + D +GK + V+W + + RQ P + NA+ KI F +++ Sbjct: 463 NDPGYLDRAGYEVTDSRGKRIPSSAVNWGAYGSNIPYSVRQQPSEANALGELKILFPNKH 522 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 YMHDTP+ F +R + GCVR+++ + +L + + I E +K T Sbjct: 523 AIYMHDTPQKSFFQRDMRALSHGCVRLQDPRGMAAAVLGTSVDY----IAEKLKHGHATE 578 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +PV+ Y +AW +++ D+Y D+ Sbjct: 579 -NVTRTIPVYVAYFTAWPDLSGKVEYFGDVYDRDS 612 >gi|239831842|ref|ZP_04680171.1| peptidoglycan binding domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239824109|gb|EEQ95677.1| peptidoglycan binding domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 670 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/285 (29%), Positives = 141/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + +A+K +Q G P G++ +TL A+ R + M + L G Sbjct: 377 YDPELVAAIKDYQKLSGSTPDGVIGRNTLSALQGEQSSIKRDRILYSMERLRWLPHDFGT 436 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 RYV+VN PA E E+GK L V++G QT ++++ ++FNP W +PRSII Sbjct: 437 RYVMVNQPAYRAEYFEDGKEKLAMNVVIGSPSHQTYFFYNKVQTVVFNPSWGVPRSIILN 496 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAST 311 +M+ + +D YL D N + + GK+V V+W+ + + RQ P NA+ Sbjct: 497 EMLPKVMRDTSYL-DRNGYEVYADGKKVSASAVNWSAVAAGKAHVGIRQKPSLDNALGEL 555 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 KI F + ++ YMHDTP F+ +R + GC+R+ D+ ++ T ++++ Sbjct: 556 KILFPNSHDIYMHDTPAKSYFSRDMRALSHGCIRLERPRDMAAAVMGTT-------VQDL 608 Query: 372 VK--TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 K + +K+ VPV+ Y +AW I++ D+Y D+ Sbjct: 609 DKYFGKNERGIKVKEPVPVYISYFTAWPDASGQIRYYGDVYDRDS 653 >gi|121591699|ref|ZP_01678927.1| putative peptidoglycan binding domain protein [Vibrio cholerae 2740-80] gi|153819645|ref|ZP_01972312.1| putative peptidoglycan binding domain protein [Vibrio cholerae NCTC 8457] gi|121546440|gb|EAX56672.1| putative peptidoglycan binding domain protein [Vibrio cholerae 2740-80] gi|126509804|gb|EAZ72398.1| putative peptidoglycan binding domain protein [Vibrio cholerae NCTC 8457] Length = 459 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 67/219 (30%), Positives = 124/219 (56%), Gaps = 6/219 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +DA +E +K FQ HGL G++ T++ +N V R+ L +N RI+ Q+ + Sbjct: 233 YDASLEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQDSM 292 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P ++ + G+ S V+VG+ R TP+++++++ ++ NP W +P I+ + Sbjct: 293 --IVVNVPGFDMKYWDAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVE 350 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE--VDWNSPEPPNFIF--RQDPGKINAMA 309 D++ ++++D +YL ++++ +I ++ +DW + EP F + RQ G NA+ Sbjct: 351 DILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALG 410 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + K + Y+HDTP LFNN R +SGC+RV N Sbjct: 411 TYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVEN 449 >gi|240948089|ref|ZP_04752499.1| hypothetical protein AM305_04803 [Actinobacillus minor NM305] gi|240297569|gb|EER48061.1| hypothetical protein AM305_04803 [Actinobacillus minor NM305] Length = 539 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 133/244 (54%), Gaps = 10/244 (4%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G++ L+S VIVGR DR+TP+++S+ Sbjct: 286 KLALNAQRLRIIPSFNNG---IFVNIPSYQLYYFRDGQLALQSKVIVGREDRRTPVMYSK 342 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW----NS 290 ++ ++ NP W +P SI+ KD++ L ++P + ++D G +V V+W N+ Sbjct: 343 LSNVVVNPPWNVPTSILTKDIVPKLARNPGIADSLSYEILDGSGNKVNPRSVNWSQYLNA 402 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 P + RQ G +A+ K S + Y+HDTP LF+ R +SGCVRV Sbjct: 403 KSIP-YRIRQKAGDDSALGRYKFNMPSSDAIYLHDTPNHGLFSRTDRALSSGCVRVNKSS 461 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 +L LL++ WS + V+ ++KTT V + ++ PV+ Y+++W + DIY Sbjct: 462 ELASILLREA-GWSAEKQQSVLASKKTTSVNIRSDNPVYLYYVTSWVEGGKVYTL-PDIY 519 Query: 411 GLDN 414 LD+ Sbjct: 520 KLDS 523 >gi|150396784|ref|YP_001327251.1| hypothetical protein Smed_1575 [Sinorhizobium medicae WSM419] gi|150028299|gb|ABR60416.1| conserved hypothetical protein [Sinorhizobium medicae WSM419] Length = 631 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 82/274 (29%), Positives = 132/274 (48%), Gaps = 9/274 (3%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 V+ FQ HGL G+V +++ A+ + +IR++++ M + L +G RYV +N Sbjct: 347 VEAFQKEHGLKADGIVGQASIRAITGGDTIGEKIRKIEI-AMEQARWLPDGLGDRYVFIN 405 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 PA + E G V+VG QT I + NPYW +P+SII +M+ L Sbjct: 406 QPAFTASYTEQGAEQFSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKL 465 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 R DP YL D + ++ G+ V V+W + RQ P NA+ KI F + + Sbjct: 466 RSDPGYL-DRMGYQVEVGGRVVSSTAVNWYG-STNSIAVRQPPSSDNALGELKILFPNAH 523 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 YMHDTP F R + GCVR+ + + +L S + E + + Sbjct: 524 AIYMHDTPSKSFFKRDQRALSHGCVRLADPRRMAAAVL----GVSVDEVGEEISGGRNKA 579 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + ++ +VPV+ Y +AW KD +++ +D+Y D Sbjct: 580 LPVSAKVPVYVSYFTAWPNKDGTVEYFNDVYERD 613 >gi|304392206|ref|ZP_07374148.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] gi|303296435|gb|EFL90793.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] Length = 694 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 89/299 (29%), Positives = 142/299 (47%), Gaps = 23/299 (7%) Query: 133 AFDA---------YVESAVKL---FQMRHGLDPSGMVDSSTLEAMNV-PVDLRIRQLQVN 179 AFDA Y+E AV+L FQ + GL P G+V +TL + +I ++++ Sbjct: 381 AFDALMMDYSDGVYIEEAVELVRAFQKKSGLKPDGIVGKNTLARLKFDSPKTKIDKVRLA 440 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 + R++ +G R+V +N PA + GK + +VG+ QT H I + Sbjct: 441 MERLR-WHPDSLGSRHVFINQPAYRATLMNGGKPQISMRAVVGKPQHQTNFFHDEIEYVE 499 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF- 298 FNPYW IPRSI+ +M+ LR++P + DN + + +G NF + Sbjct: 500 FNPYWGIPRSILVNEMLPKLRRNPSHF-DNLGYEVTTQGGRRISSSSVDWWSVGSNFPYN 558 Query: 299 -RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 RQ PG NA+ KI F +++ YMHDTP LF R + GCVR+ + + +L Sbjct: 559 VRQPPGPKNALGELKIMFPNKHAIYMHDTPAKSLFKREKRAYSHGCVRLADPRAMAAAVL 618 Query: 358 KDTPTWSRY-HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 +R + + R+ +L T++PV Y +AW D +++ D+Y D Sbjct: 619 -----GTRVDDVSAEIFDRQNKTRRLKTKLPVFVSYFTAWPTADGKVEYFGDVYQRDTA 672 >gi|52424877|ref|YP_088014.1| hypothetical protein MS0822 [Mannheimia succiniciproducens MBEL55E] gi|52306929|gb|AAU37429.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 486 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/269 (30%), Positives = 143/269 (53%), Gaps = 13/269 (4%) Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 + +D G D +++N + + +L +N R++ + G + VNIP+ L Sbjct: 211 QQTIDKIGSSDFDDDKSVNSAI---LYKLALNAQRLRVIPNFSNG---IFVNIPSYQLNY 264 Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 + ++ L S VIVG+ +R+TP+++S+++ ++ NP W P +I +D++ ++++P YL Sbjct: 265 YRDNQLILNSRVIVGKKERRTPVMYSKLSNVVVNPPWNAPTRLINEDIVPKIKKNPGYLS 324 Query: 268 DNNIHMIDEKGKEVFVEEVDW---NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 + ++D KG +V ++W S P + RQD G +A+ K S + Y+H Sbjct: 325 AHGYSILDSKGNKVNPNSINWAAIGSKFP--YRIRQDAGDNSALGRFKFNMPSSDAIYLH 382 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP LFN R +SGCVRV L LLK+ WS + V+ ++KTT + + Sbjct: 383 DTPNHNLFNKQDRALSSGCVRVEKSNQLASILLKEA-GWSEDKKQRVLNSKKTTSAPIYS 441 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + PV+ Y++AW ++ + DIYG D Sbjct: 442 DNPVYLYYVTAWV-ENGQVNTLPDIYGYD 469 >gi|300024143|ref|YP_003756754.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525964|gb|ADJ24433.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 654 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 80/280 (28%), Positives = 139/280 (49%), Gaps = 4/280 (1%) Query: 134 FDAYVESAVKLFQMRHGLDP-SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + AVK +++ G+DP + + ++ ++N + +L N M + + +G Sbjct: 301 YDDDLARAVKAYKVEKGIDPPTPTITTALRRSLNGDDGISEAKLLAN-MEEWRWMPDDLG 359 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 YV VNIP + V++G+V ++ G V+RQTP+ + I+F P W +P SI Sbjct: 360 DFYVTVNIPDFKVRVVKDGEVVFDERIVTGSVNRQTPVFSDMMRTIVFQPRWNVPDSIKV 419 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 K+++ LR L+ + M + G+ + ++W + NF Q P NA+ K Sbjct: 420 KELLPGLRAGGDPLRRQGLVM-ERNGRRISATSINWYRSDIRNFHVYQPPSGGNALGVVK 478 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F + + Y+HDTP LFN +R + GC+RVRN + L +L W + + +++ Sbjct: 479 FLFPNAHAVYLHDTPSKGLFNESIRAFSHGCMRVRNPVQLAEVVLAQDKGWDKIAVNDLL 538 Query: 373 KTR-KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 K + + L +PVH Y +A + D I+ DIYG Sbjct: 539 KNGPEENEIALDRPIPVHITYFTARAGDDGAIESFGDIYG 578 >gi|152993088|ref|YP_001358809.1| hypothetical protein SUN_1501 [Sulfurovum sp. NBC37-1] gi|151424949|dbj|BAF72452.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 397 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 97/315 (30%), Positives = 149/315 (47%), Gaps = 42/315 (13%) Query: 101 PLHLGNSSVSVQRLRE--RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 PL GN + R++ RL+ DL ++ D+++E AVK +Q RHGL+ G + Sbjct: 112 PLFRGNEVEDIMRIKAIFRLLGIADLPDDPYIT---DSFIE-AVKEYQRRHGLEVDGKIG 167 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 T +M P+ IR+++ NL+ +K ++ +K YVLVNIP ++ ENG L Sbjct: 168 PQTRRSMKQPISSIIRKVKKNLV-LKSIVHEKPAT-YVLVNIPEFAMHYYENGWPALNMK 225 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 V+VG+ +TP+ H + I+ NP W +P SI K+ + YL+ + + G Sbjct: 226 VVVGKPKMRTPVFHRNMQYIVENPRWNVPPSIYAKEYAN---KSESYLRKKGL-FYNSDG 281 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 K Q PG+ N++ K F +R N YMHDTP LF R Sbjct: 282 K------------------LYQRPGRRNSLGLVKFLFPNRFNVYMHDTPSKYLFKRYRRA 323 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 + GC+R+ L L K T+ + KT + L +PV+ Y + W Sbjct: 324 YSHGCIRLEKPFAL---LNKLGYTY---------RPGKTRWITLKHTIPVYVEYHTVWVD 371 Query: 399 KDSIIQFRDDIYGLD 413 + I+QFR DIYG + Sbjct: 372 DNGIVQFRPDIYGYE 386 >gi|161618916|ref|YP_001592803.1| peptidoglycan binding domain-containing protein [Brucella canis ATCC 23365] gi|161335727|gb|ABX62032.1| Peptidoglycan-binding domain 1 protein [Brucella canis ATCC 23365] Length = 510 Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 83/286 (29%), Positives = 143/286 (50%), Gaps = 14/286 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 217 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 275 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT +++I ++FNP W +PRSII Sbjct: 276 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKIQTVVFNPSWGVPRSIIL 335 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 336 NEMLPKVMRDTSYL-DRNGYKVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 394 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + ++ Sbjct: 395 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS-------VKN 447 Query: 371 VVK--TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + K + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 448 LDKYFGKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 493 >gi|260772914|ref|ZP_05881830.1| hypothetical protein VIB_001376 [Vibrio metschnikovii CIP 69.14] gi|260612053|gb|EEX37256.1| hypothetical protein VIB_001376 [Vibrio metschnikovii CIP 69.14] Length = 512 Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 93/376 (24%), Positives = 177/376 (47%), Gaps = 26/376 (6%) Query: 57 ARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL-------------H 103 +R+ + + + P ++ + + A++Q + + G L PL Sbjct: 143 SRLALSVAAGTPAMADLVLQHAPQDPAYHQLVYAYGFLSALKTTPLPVYRQAGLKRPGDK 202 Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 L + +QRL +++ D+ + +D + +K FQ HGL+ G++ TL+ Sbjct: 203 LDDRPTLIQRL---ALVNIDVTVIRDDVSWYDNSLIEPIKHFQQLHGLNADGVIGPQTLK 259 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 +N+ V+ R+ + +N R++ ++VN+P+ L+ G+ +S V+VGR Sbjct: 260 WLNLSVEERLGLIALNAERMRLWPTSNTS---IVVNVPSFELKYWHAGENVFQSKVVVGR 316 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 + R TP++ +R++ ++ NP W IP I+ +D++ + ++D +YL N+ ++ G + Sbjct: 317 ISRPTPVMTTRLDSLIVNPTWNIPYKIMVEDILPMAKRDLRYLDRQNLEILPRWGATQTL 376 Query: 284 E--EVDWN--SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 + +DW S E + RQ G NA+ K +R ++HDTP LF R Sbjct: 377 DPTSIDWENISLEAFPYRMRQRAGYHNALGLYKFNTPNRRAIFLHDTPSKYLFERDSRAF 436 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 +SGC+RV + LL S+ + + P++ +PV +Y +AW Sbjct: 437 SSGCIRVEHADQFANMLLTKQGLDSQQFAPQSSSVNQAIPLR--QRIPVQIIYQTAWYDA 494 Query: 400 DSIIQFRDDIYGLDNV 415 + FR+DIY LD + Sbjct: 495 GQ-LHFREDIYRLDKL 509 >gi|300773386|ref|ZP_07083255.1| peptidoglycan-binding domain 1 protein [Sphingobacterium spiritivorum ATCC 33861] gi|300759557|gb|EFK56384.1| peptidoglycan-binding domain 1 protein [Sphingobacterium spiritivorum ATCC 33861] Length = 488 Score = 129 bits (325), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 117/233 (50%), Gaps = 13/233 (5%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRV-------------DRQTPILHSRINRIMF 240 +YV+VNIP L V+N K V VG + +TP+L ++R+ Sbjct: 243 KYVVVNIPEQKLRMVDNRKTKDVMNVCVGETIYGPYARRAGATDNHETPVLSGELDRMQV 302 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP W IP SI++K++++ LR +P YL+ N+ ++KG+ V VDW+S NF F+Q Sbjct: 303 NPVWNIPVSIVKKELISSLRSNPNYLESRNMVAYNKKGQMVDPNTVDWSSDSVLNFKFKQ 362 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 +PG N++ + K F + + Y+HDTP +F+ R + GCVRV L +L+ D Sbjct: 363 NPGADNSLGNIKFIFSNPYSIYLHDTPAKQMFSAKNRAVSHGCVRVERPAALAAFLVNDD 422 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + E K+ V + +PV+ Y + W D + DIYG D Sbjct: 423 KKAEQIATEIADTLNKSRWVMMKKTIPVYITYYTTWVDDDGKLYRLPDIYGYD 475 >gi|163843230|ref|YP_001627634.1| peptidoglycan binding domain-containing protein [Brucella suis ATCC 23445] gi|163673953|gb|ABY38064.1| Peptidoglycan-binding domain 1 protein [Brucella suis ATCC 23445] Length = 510 Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 82/286 (28%), Positives = 143/286 (50%), Gaps = 14/286 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 217 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 275 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 276 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 335 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 336 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 394 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + ++ Sbjct: 395 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS-------VKN 447 Query: 371 VVK--TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + K + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 448 LDKYFGKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 493 >gi|148825793|ref|YP_001290546.1| hypothetical protein CGSHiEE_03720 [Haemophilus influenzae PittEE] gi|148715953|gb|ABQ98163.1| hypothetical protein CGSHiEE_03720 [Haemophilus influenzae PittEE] Length = 489 Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 131/241 (54%), Gaps = 7/241 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG+ R+TP+++S Sbjct: 237 QKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGKNSRRTPVMYS 293 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS-PE 292 +++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 294 KLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIGN 353 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ L Sbjct: 354 KFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRIEKSDQL 412 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 413 ASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYGY 470 Query: 413 D 413 D Sbjct: 471 D 471 >gi|229845074|ref|ZP_04465210.1| hypothetical protein CGSHi6P18H1_00944 [Haemophilus influenzae 6P18H1] gi|229812046|gb|EEP47739.1| hypothetical protein CGSHi6P18H1_00944 [Haemophilus influenzae 6P18H1] Length = 489 Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 131/241 (54%), Gaps = 7/241 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG+ R+TP+++S Sbjct: 237 QKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGKNSRRTPVMYS 293 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS-PE 292 +++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 294 KLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIGN 353 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ L Sbjct: 354 KFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNHGLFNRKNRALSSGCVRIEKSDQL 412 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 413 ASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYGY 470 Query: 413 D 413 D Sbjct: 471 D 471 >gi|145639176|ref|ZP_01794783.1| hypothetical protein CGSHiII_04039 [Haemophilus influenzae PittII] gi|145271738|gb|EDK11648.1| hypothetical protein CGSHiII_04039 [Haemophilus influenzae PittII] Length = 489 Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 131/241 (54%), Gaps = 7/241 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG+ R+TP+++S Sbjct: 237 QKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGKNSRRTPVMYS 293 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS-PE 292 +++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 294 KLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIGN 353 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ L Sbjct: 354 KFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNHGLFNRKNRALSSGCVRIEKSDQL 412 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 413 ASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYGY 470 Query: 413 D 413 D Sbjct: 471 D 471 >gi|261754930|ref|ZP_05998639.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str. 686] gi|261744683|gb|EEY32609.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str. 686] Length = 660 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 367 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 425 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 426 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 485 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 486 NEMLPKVMRDTSYL-DRNGYKVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 544 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 545 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 602 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 603 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 643 >gi|254704262|ref|ZP_05166090.1| cell wall degradation protein [Brucella suis bv. 3 str. 686] Length = 670 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 377 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 435 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 436 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 495 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 496 NEMLPKVMRDTSYL-DRNGYKVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 554 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 555 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 612 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 613 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 653 >gi|23501845|ref|NP_697972.1| hypothetical protein BR0962 [Brucella suis 1330] gi|23347781|gb|AAN29887.1| conserved hypothetical protein [Brucella suis 1330] Length = 572 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 279 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 337 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 338 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 397 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 398 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 456 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 457 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 514 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 515 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 555 >gi|322434022|ref|YP_004216234.1| ErfK/YbiS/YcfS/YnhG family protein [Acidobacterium sp. MP5ACTX9] gi|321161749|gb|ADW67454.1| ErfK/YbiS/YcfS/YnhG family protein [Acidobacterium sp. MP5ACTX9] Length = 625 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 147/289 (50%), Gaps = 10/289 (3%) Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 S + A + AVK +Q RH L +G + ++T+ ++NVP+ R +QL +L R++ L + Sbjct: 311 STVYTADLADAVKHYQSRHSLTANGQLTAATVTSLNVPLTARSQQLADSLERLRWLPDPY 370 Query: 191 MGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIP 247 + + VN+P L E+ + + V+VG+V + QTP+ + ++F P+W +P Sbjct: 371 LHAP-LQVNLPEFVLRGFGEDHQQQFKMNVVVGQVVGEHQTPVFTHMMKYVIFRPFWNVP 429 Query: 248 RSIIQKDMMA-LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 SII+K++ + + YL+ +N +D KG V S E + R+ PG N Sbjct: 430 VSIIKKELAGHIAKSGVGYLEAHNFETVDAKGAHV---NASAESIERGGVVVREKPGPKN 486 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWSR 365 ++ K F + + Y+H TP LF R + GCVRV + L VW+L++TP W Sbjct: 487 SLGLIKFMFPNEYDIYLHSTPAQQLFARSRRDFSHGCVRVEHPDQLAVWVLQNTPRNWDL 546 Query: 366 YHIEEVVKTRKTT-PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + + ++ V L ++P+ Y +A ++ + F DDIY D Sbjct: 547 QKVTDAMQNGADNHQVNLTKQIPIVIFYATARVDENGQVDFFDDIYHYD 595 >gi|256369387|ref|YP_003106895.1| hypothetical protein BMI_I960 [Brucella microti CCM 4915] gi|255999547|gb|ACU47946.1| hypothetical protein BMI_I960 [Brucella microti CCM 4915] Length = 572 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 279 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 337 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 338 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 397 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 398 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 456 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 457 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 514 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 515 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 555 >gi|260566489|ref|ZP_05836959.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str. 40] gi|260156007|gb|EEW91087.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str. 40] Length = 634 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 341 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 399 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 400 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 459 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 460 NEMLPKVMRDTSYL-DRNGYKVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 518 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 519 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 576 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 577 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 617 >gi|16273554|ref|NP_439809.1| hypothetical protein HI1667 [Haemophilus influenzae Rd KW20] gi|260581261|ref|ZP_05849079.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|1176067|sp|P44285|Y1667_HAEIN RecName: Full=Putative L,D-transpeptidase HI_1667 gi|1574515|gb|AAC23312.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|260092088|gb|EEW76033.1| conserved hypothetical protein [Haemophilus influenzae RdAW] Length = 489 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 131/241 (54%), Gaps = 7/241 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++S Sbjct: 237 QKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMYS 293 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 +++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S + Sbjct: 294 KLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIDN 353 Query: 294 P-NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV L Sbjct: 354 KFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQL 412 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 413 ASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYGY 470 Query: 413 D 413 D Sbjct: 471 D 471 >gi|86748553|ref|YP_485049.1| hypothetical protein RPB_1428 [Rhodopseudomonas palustris HaA2] gi|86571581|gb|ABD06138.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 718 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/318 (28%), Positives = 149/318 (46%), Gaps = 28/318 (8%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV- 169 V +LR +L I+ D D S +DA V AV+ FQ L P+G++D T++A+N P Sbjct: 350 VPQLRAKLGITEDAD-----STTYDAKVAEAVRKFQRGADLKPTGILDDRTVKALNTPKR 404 Query: 170 DLRIRQLQVNLMRIKKLLEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 D I + VN+ R + L Q +G YV++N+P +L+ + NG + V++G+ Sbjct: 405 DRTIDTIMVNMERWRWLPRQLGAASLGDAYVILNVPDYTLKLMHNGAQVWTTRVVIGKPG 464 Query: 226 RQ-TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 + TP+L + I NP W +P SII + + L QDP L + M + + + Sbjct: 465 KHATPLLTETMKYITVNPTWNVPPSIINNEYLPALAQDPTVLDRMGLKMSRNRDGSIHIS 524 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 Q PG+ NA+ + F ++ Y HDTP+ LF R + GC+ Sbjct: 525 ---------------QPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAREERAFSHGCM 569 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 RV+N LL Y ++ + R + T +PV+ Y +A+ D Sbjct: 570 RVQNPDQYAAALLNIAMPDKDYTPAKIRSMYGRSEVNLNFPTPIPVNITYQTAFVDDDGK 629 Query: 403 IQFRDDIYGLDNVHVGII 420 +Q R D+YG D + ++ Sbjct: 630 LQLRKDVYGRDARMLALL 647 >gi|261325062|ref|ZP_05964259.1| peptidoglycan binding domain-containing protein [Brucella neotomae 5K33] gi|261301042|gb|EEY04539.1| peptidoglycan binding domain-containing protein [Brucella neotomae 5K33] Length = 666 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 373 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 431 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 432 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 491 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 492 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 550 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 551 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 608 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 609 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 649 >gi|227536728|ref|ZP_03966777.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227243420|gb|EEI93435.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 488 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 117/233 (50%), Gaps = 13/233 (5%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRV-------------DRQTPILHSRINRIMF 240 +Y++VNIP L V+N K V VG + +TP+L ++R+ Sbjct: 243 KYIIVNIPEQKLRMVDNRKTKEVMNVCVGETIYGPYARRAGATDNHETPVLSGELDRMQV 302 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP W IP SI++K++++ LR +P YL+ N+ ++KG+ V VDW+S NF F+Q Sbjct: 303 NPVWNIPASIVKKELISSLRSNPNYLESRNMVAYNKKGQMVDPNTVDWSSDSVLNFKFKQ 362 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 +PG N++ + K F + + Y+HDTP +F+ R + GCVRV L +L+ D Sbjct: 363 NPGADNSLGNIKFIFSNPYSIYLHDTPAKQMFSAKNRAVSHGCVRVEKPAALAAFLVNDE 422 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + E K+ V + +PV+ Y + W + + DIYG D Sbjct: 423 KKAEQIATEIADTLNKSRWVMMKKTIPVYITYYTTWVDDEGKLYKLPDIYGYD 475 >gi|294852310|ref|ZP_06792983.1| cell wall degradation protein [Brucella sp. NVSL 07-0026] gi|294820899|gb|EFG37898.1| cell wall degradation protein [Brucella sp. NVSL 07-0026] Length = 666 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 373 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 431 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 432 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 491 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 492 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 550 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 551 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMATAVLGTSVKNLDKYF-- 608 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 609 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 649 >gi|306840472|ref|ZP_07473231.1| cell wall degradation protein [Brucella sp. BO2] gi|306289487|gb|EFM60705.1| cell wall degradation protein [Brucella sp. BO2] Length = 666 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 373 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 431 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 432 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 491 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 492 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 550 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 551 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 608 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 609 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 649 >gi|256061060|ref|ZP_05451216.1| cell wall degradation protein [Brucella neotomae 5K33] Length = 670 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 377 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 435 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 436 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 495 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 496 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 554 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 555 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 612 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 613 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 653 >gi|301170424|emb|CBW30030.1| conserved hypothetical protein [Haemophilus influenzae 10810] Length = 487 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 130/241 (53%), Gaps = 7/241 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++S Sbjct: 235 QKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMYS 291 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS-PE 292 +++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 292 KLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIGN 351 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV L Sbjct: 352 KFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQL 410 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 411 ASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYGY 468 Query: 413 D 413 D Sbjct: 469 D 469 >gi|254701720|ref|ZP_05163548.1| cell wall degradation protein [Brucella suis bv. 5 str. 513] gi|261752272|ref|ZP_05995981.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str. 513] gi|261742025|gb|EEY29951.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str. 513] Length = 634 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 341 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 399 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 400 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 459 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 460 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 518 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 519 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 576 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 577 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 617 >gi|319896895|ref|YP_004135090.1| hypothetical protein HIBPF05750 [Haemophilus influenzae F3031] gi|317432399|emb|CBY80754.1| conserved hypothetical protein [Haemophilus influenzae F3031] Length = 489 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 130/241 (53%), Gaps = 7/241 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++S Sbjct: 237 QKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMYS 293 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS-PE 292 +++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 294 KLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIGN 353 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV L Sbjct: 354 KFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQL 412 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 413 ASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYGY 470 Query: 413 D 413 D Sbjct: 471 D 471 >gi|152992423|ref|YP_001358144.1| hypothetical protein SUN_0829 [Sulfurovum sp. NBC37-1] gi|151424284|dbj|BAF71787.1| hypothetical protein [Sulfurovum sp. NBC37-1] Length = 405 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 83/252 (32%), Positives = 134/252 (53%), Gaps = 16/252 (6%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 +R++++++ RIK L++ +G YVLVNIP + +EN K + VI G+ D QTPI Sbjct: 152 LRKVRMSIERIK-LMKPGLGKTYVLVNIPEFRVRVIENDKTSIAMGVITGKKDHQTPIFS 210 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM-----IDEKG---KEVFVE 284 + I+ NP W +P SI + +++ L +DP YLK + + M +D V + Sbjct: 211 ENLQYIVLNPTWNVPDSIARNEVIPKLLKDPGYLKKHRLVMRRDYNLDSPALSPGSVNLR 270 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 + P F F + P NA+ K F + ++ YMHDTP LF VR + GCV Sbjct: 271 AYKGGKGDVP-FKFIEVPSDKNALGRVKFIFPNHHSVYMHDTPTKYLFKRNVRAYSHGCV 329 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVK---TRKTTPVKLATEVPVHFVYISAWSPKDS 401 R++N + +L T ++ Y EE ++ + KT +K+ +PVH Y++A+ +D Sbjct: 330 RLQNPKLMLKYL---TEHYTNYSFEEAMEKYNSYKTQYMKIIKPLPVHTAYLTAYVEEDG 386 Query: 402 IIQFRDDIYGLD 413 ++ DIYGLD Sbjct: 387 TLKVFPDIYGLD 398 >gi|329123250|ref|ZP_08251818.1| hypothetical protein HMPREF9095_1036 [Haemophilus aegyptius ATCC 11116] gi|327471459|gb|EGF16907.1| hypothetical protein HMPREF9095_1036 [Haemophilus aegyptius ATCC 11116] Length = 487 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 130/241 (53%), Gaps = 7/241 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++S Sbjct: 235 QKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMYS 291 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS-PE 292 +++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 292 KLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIGN 351 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV L Sbjct: 352 KFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQL 410 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 411 ASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYGY 468 Query: 413 D 413 D Sbjct: 469 D 469 >gi|325578156|ref|ZP_08148291.1| hypothetical protein HMPREF9417_1032 [Haemophilus parainfluenzae ATCC 33392] gi|325159892|gb|EGC72021.1| hypothetical protein HMPREF9417_1032 [Haemophilus parainfluenzae ATCC 33392] Length = 497 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 133/243 (54%), Gaps = 7/243 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + + G + VNIP+ L+ +GK L S VIVG+ +R+TP+++S Sbjct: 246 KKLALNAQRLRVIPDFENG---IFVNIPSYQLKYYRDGKAILESRVIVGKNERRTPVMYS 302 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS-PE 292 R++ ++ NP W P +I +D++ L++DP Y +N ++D KG + ++W+S + Sbjct: 303 RLSNVVVNPPWNAPTRLINEDILPKLKRDPGYAAAHNYSILDSKGNTIDPYSINWSSIGD 362 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LF+ R +SGCVRV L Sbjct: 363 RFPYRIRQAAGD-SALGNYKFNMPSSDAIYLHDTPNHNLFSKKDRALSSGCVRVEKSDQL 421 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LL++ WS V+ ++KTT + T PV Y++AW ++ Q DIY Sbjct: 422 ASILLQEA-GWSEDRKRNVLASKKTTSANIRTNDPVFLYYVTAWV-ENGQTQVLPDIYKY 479 Query: 413 DNV 415 D+ Sbjct: 480 DDA 482 >gi|68250268|ref|YP_249380.1| hypothetical protein NTHI1968 [Haemophilus influenzae 86-028NP] gi|148827093|ref|YP_001291846.1| hypothetical protein CGSHiGG_02060 [Haemophilus influenzae PittGG] gi|319776086|ref|YP_004138574.1| hypothetical protein HICON_14350 [Haemophilus influenzae F3047] gi|68058467|gb|AAX88720.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP] gi|148718335|gb|ABQ99462.1| alpha-ketoglutarate decarboxylase [Haemophilus influenzae PittGG] gi|309750756|gb|ADO80740.1| Putative murein L,D-transpeptidase [Haemophilus influenzae R2866] gi|317450677|emb|CBY86897.1| conserved hypothetical protein [Haemophilus influenzae F3047] Length = 489 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 130/241 (53%), Gaps = 7/241 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++S Sbjct: 237 QKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMYS 293 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS-PE 292 +++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 294 KLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIGN 353 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV L Sbjct: 354 KFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQL 412 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 413 ASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYGY 470 Query: 413 D 413 D Sbjct: 471 D 471 >gi|148558873|ref|YP_001258930.1| cell wall degradation protein [Brucella ovis ATCC 25840] gi|148370130|gb|ABQ60109.1| cell wall degradation protein [Brucella ovis ATCC 25840] Length = 656 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 140/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 363 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 421 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT + ++ ++FNP W +PRSII Sbjct: 422 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYDKVQTVVFNPSWGVPRSIIL 481 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 482 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 540 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 541 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 598 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 599 ----GKDERDIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 639 >gi|309972939|gb|ADO96140.1| Putative murein L,D-transpeptidase [Haemophilus influenzae R2846] Length = 489 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 130/241 (53%), Gaps = 7/241 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++S Sbjct: 237 QKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMYS 293 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS-PE 292 +++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 294 KLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIGN 353 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV L Sbjct: 354 KFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQL 412 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 413 ASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYGY 470 Query: 413 D 413 D Sbjct: 471 D 471 >gi|145631483|ref|ZP_01787252.1| hypothetical protein CGSHi22421_02471 [Haemophilus influenzae R3021] gi|144982913|gb|EDJ90426.1| hypothetical protein CGSHi22421_02471 [Haemophilus influenzae R3021] Length = 489 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 130/241 (53%), Gaps = 7/241 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++S Sbjct: 237 QKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMYS 293 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS-PE 292 +++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 294 KLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIGN 353 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ L Sbjct: 354 KFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNHGLFNRKNRALSSGCVRIEKSDQL 412 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 413 ASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYGY 470 Query: 413 D 413 D Sbjct: 471 D 471 >gi|229846898|ref|ZP_04467005.1| alpha-ketoglutarate decarboxylase [Haemophilus influenzae 7P49H1] gi|229810387|gb|EEP46106.1| alpha-ketoglutarate decarboxylase [Haemophilus influenzae 7P49H1] Length = 489 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 130/241 (53%), Gaps = 7/241 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++S Sbjct: 237 QKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMYS 293 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS-PE 292 +++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 294 KLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIGN 353 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ L Sbjct: 354 KFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRIEKSEQL 412 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 413 ASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYGY 470 Query: 413 D 413 D Sbjct: 471 D 471 >gi|255623270|ref|XP_002540350.1| conserved hypothetical protein [Ricinus communis] gi|223496506|gb|EEF22033.1| conserved hypothetical protein [Ricinus communis] Length = 249 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 87/270 (32%), Positives = 132/270 (48%), Gaps = 27/270 (10%) Query: 80 KAIAFYQDILSRGGW---PELPIRPLHLGNSS-VSVQRLRERLIISGDLDPSKGLSVA-- 133 K + Y+D+ ++GGW PE P PL LG+ + +L RL I DP+ + A Sbjct: 1 KGLVVYRDLAAKGGWALIPEGP--PLKLGDKGDPRITQLEARLAIE---DPTIAVDKAPV 55 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 FD ++ A+ Q R GL+P G++ TL A+NVPV LRI Q+ N+ R + L E+ Sbjct: 56 FDEALQQALMRAQKRFGLNPDGVLGKGTLAALNVPVQLRIDQIVANMERWRWLPEELPAD 115 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R + VNI AA + + L + GR +TP+L S+I+ I+ NP W +P SI K Sbjct: 116 R-IQVNIAAAVMSVFHHDAPTLTMRAVTGRPGDETPMLQSQIHSIVLNPPWNVPSSIATK 174 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 ++ R +P YL N+ +I +G ++ Q G A+ K Sbjct: 175 ELWPKERANPGYLARNDFIVIPTEGGGTRLQ---------------QKAGDKAALGLVKF 219 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 +F + Y+HDTP F + R + GC Sbjct: 220 DFNNPYGVYLHDTPSRAKFASYSRLASHGC 249 >gi|145633343|ref|ZP_01789074.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 3655] gi|145634471|ref|ZP_01790181.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittAA] gi|144986189|gb|EDJ92779.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 3655] gi|145268451|gb|EDK08445.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittAA] Length = 489 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 130/241 (53%), Gaps = 7/241 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++S Sbjct: 237 QKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMYS 293 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS-PE 292 +++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 294 KLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIGN 353 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ L Sbjct: 354 KFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRIEKSEQL 412 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 413 ASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYGY 470 Query: 413 D 413 D Sbjct: 471 D 471 >gi|197105669|ref|YP_002131046.1| peptidoglycan-binding domain 1 [Phenylobacterium zucineum HLK1] gi|196479089|gb|ACG78617.1| peptidoglycan-binding domain 1 [Phenylobacterium zucineum HLK1] Length = 605 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 86/294 (29%), Positives = 136/294 (46%), Gaps = 27/294 (9%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 A+D +E AV+ FQ HGL +G D +TLEA+N R ++ NL R L G Sbjct: 308 AYDEVLEGAVRAFQRAHGLPDTGRADRTTLEALNAGAAHYERLVEANLERASAL-PASFG 366 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 R++LV+ A L ++G+ V+ G+ + TP++ ++ ++FNPYW +P ++Q Sbjct: 367 ERFILVDAAAGQLWYYDHGQQLAAMKVVTGKPSQPTPMMVGMVSHLIFNPYWNVPEDLVQ 426 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE-----------EVDWNSPEPPNFI--FR 299 + P+ L ++ + I+E+G EV + VDW + R Sbjct: 427 TSIA------PKVL-EHGLGYIEEEGLEVLSDYTADAVVLDPAAVDWRAVAAGALSVRVR 479 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG N M K+ + Y+HDTP F R +SGCVR+ + + L L Sbjct: 480 QKPGPKNMMGKVKLMLPNPLGIYLHDTPHRGDFARSQRLASSGCVRLEDAMSLARLLAGG 539 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + + + + LA PV+ Y++A D I FR D+YGLD Sbjct: 540 DKAEAALAVGGEERR-----IDLAEPAPVYITYLTAAPTSDGFI-FRPDVYGLD 587 >gi|265984050|ref|ZP_06096785.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13] gi|264662642|gb|EEZ32903.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13] Length = 660 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 367 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 425 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 426 KRYVMVNQPAYRAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 485 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 486 NEMLPKVMRDTSYL-DRNGYEVYVNGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 544 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 545 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 602 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 603 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 643 >gi|146338286|ref|YP_001203334.1| putative signal peptide [Bradyrhizobium sp. ORS278] gi|146191092|emb|CAL75097.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS278] Length = 691 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 92/322 (28%), Positives = 156/322 (48%), Gaps = 28/322 (8%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 S V +LR +L ++ +LD + +DA V +AV+ FQ L P+G++D T++A+N Sbjct: 318 SDPRVPKLRAKLGLTENLD-----DIRYDAKVAAAVRKFQDSVDLKPTGVLDDRTVKALN 372 Query: 167 VPV-DLRIRQLQVNLMR----IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 P D +I + VN+ R ++L +G YV++NIP +L+ +++G + V+ Sbjct: 373 TPKRDKQIDTVIVNMERWRWLPRELGAPAIGNAYVILNIPDYTLKVMQHGAQVWTTRVVT 432 Query: 222 GRVDRQ-TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 G+ + TP+L + I NP W +P SII + + L+QDP L + + + Sbjct: 433 GKPGQHATPLLSETMKFITVNPTWNVPPSIIYNEYLPALQQDPTVLDRMGLRLERARDGS 492 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 + + Q PG+ NA+ + F ++ Y HDTP+ LF R + Sbjct: 493 IHIS---------------QPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAKEDRAFS 537 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV--KLATEVPVHFVYISAWSP 398 GC+RV+ LL T RY E + ++ + K T +PV+ Y +A+ Sbjct: 538 HGCMRVQYPDQYASVLLNLTMPGERYTPERIRGMYGSSEIDLKFPTPIPVNITYQTAFVD 597 Query: 399 KDSIIQFRDDIYGLDNVHVGII 420 +QFR D+YG D + I+ Sbjct: 598 DAGKLQFRKDVYGRDATMIAIL 619 >gi|306838973|ref|ZP_07471795.1| cell wall degradation protein [Brucella sp. NF 2653] gi|306405940|gb|EFM62197.1| cell wall degradation protein [Brucella sp. NF 2653] Length = 666 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 373 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 431 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 432 KRYVMVNQPAYRAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 491 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 492 NEMLPKVMRDTSYL-DRNGYEVYVNGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 550 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 551 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 608 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 609 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 649 >gi|212635459|ref|YP_002311984.1| hypothetical protein swp_2663 [Shewanella piezotolerans WP3] gi|212556943|gb|ACJ29397.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 457 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 100/372 (26%), Positives = 165/372 (44%), Gaps = 23/372 (6%) Query: 49 NDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSS 108 N RFD L + S + I I Y+ LS WP+L LG + Sbjct: 95 NKRFDELLTFAE----------SNKQIKALRDKIRQYEQ-LSNYQWPQLEASVFSLGQRA 143 Query: 109 VSVQRLRERLIISGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + +LR L+ DL D S FD + ++K FQ RHGL SG ++ T+ + Sbjct: 144 TDIAKLRWVLVKLDDLEFKDISAYREAIFDPSITRSLKRFQKRHGLIQSGELNKETITLL 203 Query: 166 NVPVDLRIRQLQVNLM-RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 N + +LQ++L ++ K+ Q Y+ VNIP L + L VIVG + Sbjct: 204 NTEPAFIVSKLQLSLKDKLSKVNYQNSS--YIEVNIPEFKLRIKGDESSTLEFPVIVGSI 261 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 +TP+LH+ +++I NP W PRSI+ +++A L++ P+ L++ ++ +KG V+ Sbjct: 262 KNKTPLLHTYVSKITINPTWTPPRSIVYNELLAELKKSPKSLENQKFVLV-KKGNTNEVK 320 Query: 285 EVDWNSP-----EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 + E + Q PG NA+ + + +MHDTP+ F R Sbjct: 321 SLKGMDASRLKQELKVYQLVQSPGFRNALGKYRFTIPNSELIFMHDTPDKQAFKKRNRAI 380 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 + GC+R+ L +L+ + K T +KL +P+ + W K Sbjct: 381 SHGCIRLSQPELLAKYLIDRENSIESIRFLSARKGVNTVDIKLRNPIPIIITNHNVWVDK 440 Query: 400 DSIIQFRDDIYG 411 D+++Q R +Y Sbjct: 441 DNVLQVRPSVYN 452 >gi|75675184|ref|YP_317605.1| hypothetical protein Nwi_0991 [Nitrobacter winogradskyi Nb-255] gi|74420054|gb|ABA04253.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 811 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 92/311 (29%), Positives = 150/311 (48%), Gaps = 28/311 (9%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV- 169 V ++R RL ++ + D ++ FDA V +AV+ FQ RH L P G++ ++T+ A+N P Sbjct: 440 VPQIRARLGVTQNPDDTR-----FDADVAAAVREFQARHHLKPDGILGNNTIRALNGPKK 494 Query: 170 DLRIRQLQVNLMR----IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 D I + N+ R ++L +G Y ++NIP SL+ +++G + V+VG+ Sbjct: 495 DHTIDTIIANMERWRWLPRELGAPSLGDAYAILNIPDYSLKVMQHGAPIWSTRVVVGKPG 554 Query: 226 -RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 TP+L + I NP W +P SII K+ + L+QDP L + + ++ + + Sbjct: 555 LHATPLLTETMKYITVNPTWNVPPSIIYKEYLPALQQDPTVLSRMGLKLERDRNGGIHIS 614 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 Q PG+ NA+ + F ++ Y HDTP+ LF R + GC+ Sbjct: 615 ---------------QPPGERNALGRIRFNFPNKFLVYQHDTPDKHLFAKEKRAFSHGCM 659 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 RV+N LL Y E+V + R + T PVH Y +A+ + Sbjct: 660 RVQNPDQYAATLLNIVLPQEHYTPEKVRSMYGRNEFNINFPTPFPVHITYQTAFVDQAGK 719 Query: 403 IQFRDDIYGLD 413 +Q R D+YG D Sbjct: 720 LQLRGDVYGRD 730 >gi|254719057|ref|ZP_05180868.1| cell wall degradation protein [Brucella sp. 83/13] Length = 670 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/285 (28%), Positives = 141/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 377 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 435 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 436 KRYVMVNQPAYRAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 495 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 496 NEMLPKVMRDTSYL-DRNGYEVYVNGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 554 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 555 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 612 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 613 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 653 >gi|294011534|ref|YP_003544994.1| putative peptidoglycan binding domain protein [Sphingobium japonicum UT26S] gi|292674864|dbj|BAI96382.1| putative peptidoglycan binding domain protein [Sphingobium japonicum UT26S] Length = 484 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 98/347 (28%), Positives = 159/347 (45%), Gaps = 45/347 (12%) Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 K +A Y+ I GGWP L + S +R R+ I SV + Sbjct: 157 RKGLANYERIRDAGGWPTL--------TAQSSPDVVRARIAIEDK-------SVTPGEKL 201 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 ++ Q R+GL+P+G++D+ TL +NVPVD RI + N+ R + + +++ + V V Sbjct: 202 VDVLQRAQRRYGLNPTGLLDARTLRELNVPVDDRIAAIMANMERW-RWMPRQLPVNRVQV 260 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM--- 255 NI AA L E + + G D TP+L S I+ I+ NP W +P SI ++++ Sbjct: 261 NIAAAVLTVFEGDQPVTSMRAVTGAPDNATPMLVSSIHSIVVNPPWNVPASIAKRELWPK 320 Query: 256 --MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 AL+RQ I E G+ + P PN +A+ K Sbjct: 321 GRAALIRQ------GYKIVGTPETGERIV-------QPAGPN----------SALGRLKF 357 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 +F + Y+HDTP F++ R + GC+R+ + L ++ P + I+ ++ Sbjct: 358 DFNNPFAVYLHDTPSRAKFSSYDRLASHGCIRLEKPVPLAELMVASDPDLA-GKIQSLID 416 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 T KT V L EV V+ +Y +A++ + + FR D YG D + I Sbjct: 417 TGKTQRVSLPKEVAVYLLYWTAFAGNNGTMNFRSDPYGWDKLLAAKI 463 >gi|209884231|ref|YP_002288088.1| peptidoglycan-binding domain 1 [Oligotropha carboxidovorans OM5] gi|209872427|gb|ACI92223.1| peptidoglycan-binding domain 1 [Oligotropha carboxidovorans OM5] Length = 712 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 145/295 (49%), Gaps = 23/295 (7%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV-DLRIRQLQVNLMR----IKKLLE 188 +DA V +AV+ FQ +GL +G++D TL A+N P D +I ++VN+ R + L Sbjct: 366 YDATVATAVRKFQAANGLKATGVLDKQTLAALNGPKNDRKIDIVRVNMERWRWLPRDLGA 425 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ-TPILHSRINRIMFNPYWVIP 247 + +G YV++NIP SL+ + NG ++ V+VG+ + TP L + I NP W +P Sbjct: 426 KALGDAYVVLNIPDYSLKLMHNGAPVWKTRVVVGKPGKHATPELTETMKYITVNPTWNVP 485 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SII + + L+QDP L+ + + + + Q PG+ NA Sbjct: 486 PSIIYNEYLPALQQDPTVLERMGLKLQRNPDGTIRIS---------------QPPGERNA 530 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + + F ++ Y HDTP+ LF R + GC+RV+N LL Y Sbjct: 531 LGRIRFNFPNKFLVYQHDTPDKHLFAKTERAFSHGCMRVQNPDQYAANLLSIALPKDHYT 590 Query: 368 IEEV--VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 E++ + R + T +PV+ VY +A+ +++FR DIYG D + ++ Sbjct: 591 PEKIRGMYGRSEININFPTPIPVNIVYHTAFVDDAGVLEFRKDIYGRDARMISLL 645 >gi|154246011|ref|YP_001416969.1| peptidoglycan binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154160096|gb|ABS67312.1| Peptidoglycan-binding domain 1 protein [Xanthobacter autotrophicus Py2] Length = 672 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 97/327 (29%), Positives = 152/327 (46%), Gaps = 33/327 (10%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P IRP G S + LR RL ++G P+ A+D + AVK FQ + P+ Sbjct: 342 PGAQIRP---GASDPRIPTLRTRLGVTGR--PAD--DNAYDPALVDAVKAFQEASKIKPT 394 Query: 155 GMVDSSTLEAMNV---PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 G+V ST+ A+N P ++ + M + L + +G YV+VNIP + ++G Sbjct: 395 GIVGPSTIAALNAGATPGGGSLKSDVIANMERWRWLPRDLGESYVMVNIPEFLVRIYQSG 454 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 + V+VG+ + TP+L + I+ NP W IP SI + +MM LLR DP L I Sbjct: 455 HEIHETRVVVGKPETPTPLLSREMQYIVVNPAWNIPPSIARNEMMPLLRSDPSALSRRGI 514 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 ++ + FRQ P + NA+ K F + ++ Y+HDTP L Sbjct: 515 EVVRNGSG---------------GYSFRQVPSERNALGRIKFMFPNDHSVYLHDTPSKAL 559 Query: 332 FNNVVRFETSGCVRVRNIID-----LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 F N R + GCVRV + ++ L D W++ I ++ + + V L Sbjct: 560 FQNDRRAYSHGCVRVYEPLKFGEVIFNLGLPND--HWTQTRIGKMFGSSERY-VNLKQRF 616 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLD 413 PVH VY + + R+D+YG++ Sbjct: 617 PVHIVYFNVVVDDAGRLAVREDLYGIN 643 >gi|149277939|ref|ZP_01884078.1| putative periplasmic protein [Pedobacter sp. BAL39] gi|149231137|gb|EDM36517.1| putative periplasmic protein [Pedobacter sp. BAL39] Length = 501 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 88/269 (32%), Positives = 130/269 (48%), Gaps = 34/269 (12%) Query: 174 RQLQVNLMRIK---KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR------- 223 R L+ NL R++ K +QK YVLVNI +L+ V+N K L+ V VG Sbjct: 222 RVLKANLERLRWKNKPTQQK----YVLVNIADFTLDVVDNNKSVLKMKVCVGEGRNENFK 277 Query: 224 -----------------VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 R+TP L+S I+ + NP W IP SI K++ +D YL Sbjct: 278 DRVLKEYDETGLKKDRPFSRETPQLNSMIHSVQVNPVWNIPESIATKEISRYAAKDRFYL 337 Query: 267 KDNNIHMIDEKGKEVF-VEEVDWNSPEPPN-FIFRQDPGKINAMASTKIEFYSRNNTYMH 324 +NNI + E GK + E +D+++ + + + F+Q PG N++ K F + + Y+H Sbjct: 338 SNNNIDVF-ENGKRIEDPETIDFSAGDAGSRYTFKQRPGNDNSLGKIKFLFKNDESVYLH 396 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP F+ VR + GCVRV +L L D + E K + L+ Sbjct: 397 DTPAKAAFDLPVRAVSHGCVRVEKPSELAKALFGDGQKYQTIQKEMQSKQPVAKDISLSP 456 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +VPV+ Y +AW + +QFR DIYGLD Sbjct: 457 QVPVYLTYFTAWKDEQGNMQFRKDIYGLD 485 >gi|307294368|ref|ZP_07574212.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobium chlorophenolicum L-1] gi|306880519|gb|EFN11736.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobium chlorophenolicum L-1] Length = 485 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 97/347 (27%), Positives = 159/347 (45%), Gaps = 45/347 (12%) Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 K +A Y+ I GGWP L + + +R R+ I SV + Sbjct: 158 RKGLANYERIRDAGGWPTL--------TAQSAPDVVRARVAIEDK-------SVTPGEKL 202 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 ++ Q R+GL+P+G++D+ TL +NVPVD RI + N+ R + + +++ + V V Sbjct: 203 VDVLQRAQRRYGLNPTGLLDTRTLRELNVPVDDRIAAIMANMERW-RWMPRQLPVNRVQV 261 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM--- 255 NI AA L E + + G D TP+L S I+ I+ NP W +P SI ++++ Sbjct: 262 NIAAAVLTVFEGDEPVTSMRAVTGAPDNATPMLVSSIHSIVVNPPWNVPASIAKRELWPK 321 Query: 256 --MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 AL+RQ I E G+ + P PN +A+ K Sbjct: 322 GRAALIRQ------GYKIVGTPETGERIV-------QPAGPN----------SALGRLKF 358 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 +F + Y+HDTP F++ R + GC+R+ + L ++ P + I+ ++ Sbjct: 359 DFNNPFAVYLHDTPSRAKFSSYDRLASHGCIRLEKPVPLAELMMAGNPDLA-GKIQSLID 417 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 T KT V L EV V+ +Y +A++ + + FR D YG D + I Sbjct: 418 TGKTQRVSLPREVAVYLLYWTAFASNNGTMSFRSDPYGWDKLLAAKI 464 >gi|146329173|ref|YP_001209233.1| lipoprotein [Dichelobacter nodosus VCS1703A] gi|146232643|gb|ABQ13621.1| conserved hypothetical lipoprotein [Dichelobacter nodosus VCS1703A] Length = 505 Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 123/238 (51%), Gaps = 5/238 (2%) Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 L +N+ R++ + Q G +YV+ NIPA ++E + + + +VGR DR TP ++I Sbjct: 260 LIINMERLR-WMPQDWGEQYVITNIPAFNVEMYRDERKIYETRAVVGRADRATPRFINKI 318 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 ++ NP W +P +I+++D + L+ +P D + + GK V W+ E Sbjct: 319 QHVVINPTWTVPPTIMRQDKLPKLKNNPAAF-DASYEAVSASGKIAKPSSVSWS--EGNG 375 Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 + RQ G+ NA+ K F +++ YMHDTP LF R +SGC+R++ ++L Sbjct: 376 YSLRQKSGQYNALGRVKFLFPNKHAIYMHDTPTRHLFKQNNRARSSGCIRLQKPLELAEI 435 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 LL D W+ I+ + K V E PV+ VY + + ++ I+ D+YGLD Sbjct: 436 LLADN-GWNAQKIQASIAKEKQQWVNPVKETPVYLVYWTTYVDANNTIKTTPDVYGLD 492 >gi|254710055|ref|ZP_05171866.1| hypothetical protein BpinB_07218 [Brucella pinnipedialis B2/94] gi|256031550|ref|ZP_05445164.1| hypothetical protein BpinM2_12995 [Brucella pinnipedialis M292/94/1] gi|261317602|ref|ZP_05956799.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis B2/94] gi|265988636|ref|ZP_06101193.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M292/94/1] gi|261296825|gb|EEY00322.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis B2/94] gi|264660833|gb|EEZ31094.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M292/94/1] Length = 556 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 142/286 (49%), Gaps = 14/286 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 263 YDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 321 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 322 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 381 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 382 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 440 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + ++ Sbjct: 441 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS-------VKN 493 Query: 371 VVK--TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + K + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 494 LDKYFGKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 539 >gi|326336070|ref|ZP_08202242.1| peptidoglycan binding domain protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691579|gb|EGD33546.1| peptidoglycan binding domain protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 559 Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 87/329 (26%), Positives = 149/329 (45%), Gaps = 11/329 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ +G + ++ LR L G P +G D+ + AVK FQ G+ G+ Sbjct: 229 LKSYGIGYADSTILALRAHLEYKGYKSPVQGEPQQVDSLLIEAVKEFQRSIGIPADGIPG 288 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 + T+ + + + + L +N+ R++ + +G Y+LVNIP L + + Sbjct: 289 ALTMNYLQMNIKQKRDLLLLNMERLR-WQNKDLGEDYILVNIPEYCLRLFHKDSLMFETR 347 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK-DNNIHMIDEK 277 V+VG TPI + I F P W +P+SI++K+M+ + LK + + E Sbjct: 348 VVVGNPKTPTPIFSDSLRYIEFRPTWSVPQSIVRKEMIPNIISSGDSLKYAKRGYKLYEN 407 Query: 278 GKEVFVEEVDWNSPEPPN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 KE+ +V+W + F F +DP + N++ K Y+ + Y+HDTP LF N Sbjct: 408 NKEIDPTQVNWKDDQLHKRIFYFVEDPSERNSLGLVKFVLYNDMSIYLHDTPSKRLFGNT 467 Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV---- 391 R + GC+RV +LLK + W + E + T K + HFV Sbjct: 468 QRTYSHGCIRVEYPDQFATYLLKSSEDWDEQKVREAMDTGKN---QYRVHPKKHFVIDIS 524 Query: 392 YISAWSPKDSIIQFRDDIYGLDNVHVGII 420 Y++AW K + R+D Y D + ++ Sbjct: 525 YLTAWVDKKGNLIIRNDPYQFDKEQLKVL 553 >gi|94498521|ref|ZP_01305077.1| peptidoglycan binding domain protein [Sphingomonas sp. SKA58] gi|94422064|gb|EAT07109.1| peptidoglycan binding domain protein [Sphingomonas sp. SKA58] Length = 484 Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 101/353 (28%), Positives = 171/353 (48%), Gaps = 48/353 (13%) Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS 127 P ET+ Q +A Y+ I +GGW ++S S +R+R+ + DPS Sbjct: 148 PWAGYETLRQ---GLARYEAIRDQGGW--------QSLSASSSSDAIRKRIAME---DPS 193 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 V+ D + ++ Q R+GL+P+G +D+ TL A+NV VD RI + N+ R + + Sbjct: 194 ----VSPDEKLADIIQRAQRRYGLNPTGNLDARTLAALNVGVDDRIAAIMANMERWR-WM 248 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + + V VNI AA L E + + G D QTP+L S I+ I+ NP W +P Sbjct: 249 PRSLPVNRVQVNIAAAVLTLFEGDQPVTSMRAVTGSPDNQTPMLSSSIHSIVVNPPWNVP 308 Query: 248 RSIIQKDMM-----ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 SI ++++ L+RQ + +K +G E V+ P PN Sbjct: 309 MSIARRELFPKGRATLIRQGYKIVK-------TPEGGERIVQ------PAGPN------- 348 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 +A+ K +F + Y+HDTP F++ R + GC+R+ + L ++ +P Sbjct: 349 ---SALGRLKFDFNNPFAVYLHDTPARGKFSSYDRLASHGCIRLEKPVALAEQMVAASPD 405 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + I+ ++ KT V L +V V+ +Y +A++ D ++ FR+D YG D + Sbjct: 406 LN-GQIQNLIDEGKTQRVSLPQDVAVYLLYWTAFANGDGVVSFRNDPYGWDKL 457 >gi|85716085|ref|ZP_01047061.1| hypothetical protein NB311A_10915 [Nitrobacter sp. Nb-311A] gi|85697084|gb|EAQ34966.1| hypothetical protein NB311A_10915 [Nitrobacter sp. Nb-311A] Length = 783 Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 93/312 (29%), Positives = 154/312 (49%), Gaps = 30/312 (9%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV- 169 V ++R RL ++ + D ++ FDA V +AV+ FQ RH L P G++ ++T+ A+N P Sbjct: 413 VPQIRARLGMTQNPDDTR-----FDADVAAAVREFQARHHLKPDGILGNNTVRALNGPKK 467 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGL-----RYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 D I + VN+ R + L +++G Y ++NIP SL+ +++G + V+VG+ Sbjct: 468 DHTIDTIIVNMERWR-WLPRELGAPSLDDAYAILNIPDYSLKVMQHGAQIWSTRVVVGKP 526 Query: 225 D-RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 TP+L + I NP W +P SII K+ + L+QDP L + + ++ + + Sbjct: 527 GLHATPLLTETMKYITVNPTWNVPPSIIYKEYLPALQQDPTVLSRMGLKLERDRNGGIHI 586 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 Q PG+ NA+ + F ++ Y HDTP+ LF+ R + GC Sbjct: 587 S---------------QPPGERNALGRIRFNFPNKFLVYQHDTPDKHLFSKNKRAFSHGC 631 Query: 344 VRVRNIIDLDVWLLKDTPTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 +RV+N LL Y E++ + R + T VPVH Y +A+ + Sbjct: 632 MRVQNPDQYAATLLNIVLPQEHYTPEKIRSMYGRNEFNINFPTPVPVHITYQTAFVDQAG 691 Query: 402 IIQFRDDIYGLD 413 +Q R D+YG D Sbjct: 692 KLQLRADVYGRD 703 >gi|213420016|ref|ZP_03353082.1| hypothetical protein Salmonentericaenterica_20520 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 546 Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 77/218 (35%), Positives = 119/218 (54%), Gaps = 8/218 (3%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 316 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 375 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 376 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 432 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 433 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 492 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 + K S + Y+HDTP LF R +SGCVR Sbjct: 493 LGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVR 530 >gi|265998101|ref|ZP_06110658.1| peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1] gi|262552569|gb|EEZ08559.1| peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1] Length = 660 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 140/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 367 YDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 425 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 426 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 485 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 486 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 544 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 545 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 602 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 603 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 643 >gi|256254952|ref|ZP_05460488.1| cell wall degradation protein [Brucella ceti B1/94] Length = 670 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 140/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 377 YDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 435 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 436 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 495 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 496 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 554 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 555 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 612 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 613 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 653 >gi|260168681|ref|ZP_05755492.1| cell wall degradation protein [Brucella sp. F5/99] Length = 666 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 140/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 373 YDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 431 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 432 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 491 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 492 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 550 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 551 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 608 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 609 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 649 >gi|261218691|ref|ZP_05932972.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1] gi|260923780|gb|EEX90348.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1] Length = 660 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 140/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 367 YDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 425 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 426 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 485 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 486 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 544 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 545 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 602 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 603 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 643 >gi|256159684|ref|ZP_05457437.1| cell wall degradation protein [Brucella ceti M490/95/1] Length = 666 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 140/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 373 YDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 431 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 432 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 491 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 492 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 550 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 551 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 608 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 609 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 649 >gi|261314301|ref|ZP_05953498.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M163/99/10] gi|261321811|ref|ZP_05961008.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1] gi|261758157|ref|ZP_06001866.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99] gi|261294501|gb|EEX97997.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1] gi|261303327|gb|EEY06824.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M163/99/10] gi|261738141|gb|EEY26137.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99] Length = 634 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 140/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 341 YDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 399 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 400 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 459 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 460 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 518 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 519 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 576 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 577 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 617 >gi|225627441|ref|ZP_03785478.1| cell wall degradation protein [Brucella ceti str. Cudo] gi|254706835|ref|ZP_05168663.1| cell wall degradation protein [Brucella pinnipedialis M163/99/10] gi|254714056|ref|ZP_05175867.1| cell wall degradation protein [Brucella ceti M644/93/1] gi|254716887|ref|ZP_05178698.1| cell wall degradation protein [Brucella ceti M13/05/1] gi|225617446|gb|EEH14491.1| cell wall degradation protein [Brucella ceti str. Cudo] Length = 670 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 140/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 377 YDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 435 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 436 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 495 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 496 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 554 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 555 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 612 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 613 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 653 >gi|312113144|ref|YP_004010740.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodomicrobium vannielii ATCC 17100] gi|311218273|gb|ADP69641.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodomicrobium vannielii ATCC 17100] Length = 725 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 93/339 (27%), Positives = 158/339 (46%), Gaps = 36/339 (10%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + +R+RL + LD + +D + AV FQ GL+ +G+VD A Sbjct: 322 GDDDAQIALIRKRL--NAGLDAPR--DTIYDEALLVAVNRFQKERGLNVNGIVDKKLRAA 377 Query: 165 MN----VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 +N VD + +L VN+ R + + +G YV +IP + + G+V + ++ Sbjct: 378 LNEGAGGSVDEKKMRLIVNMERWR-WMPDDLGEFYVWNSIPEQTTRVFDRGRVAFQERIV 436 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD-PQYLKDNNIHMIDE--- 276 VG+ QTP +++ ++FNP W +P I ++ LR+ P D+ + Sbjct: 437 VGKPTSQTPSFSAKMQFVIFNPEWGVPDGIKANEIAPKLRRAAPSGPSDDLFSFLGGRSG 496 Query: 277 ---------------------KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 G++V + VDW+ + + F Q G NA+ K F Sbjct: 497 GGGGGGASSVLQRLGGLRVTYNGRDVDPDSVDWSRVDARRYSFIQPAGPRNALGVVKFRF 556 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL-DVWLLKDTPTWSRYHIEEVVKT 374 ++++ YMHDTPE LF + R + GC+R +N + +V L D T + I +++ Sbjct: 557 PNKHDVYMHDTPEKSLFGSATRAFSHGCMRTQNPVRFAEVILAYDNGT-TPEQIRRQIES 615 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +TT KL +PVH VY +A + I++ D+YGLD Sbjct: 616 GQTTENKLTKTIPVHMVYFTAAPDEKGDIRYFSDLYGLD 654 >gi|261222137|ref|ZP_05936418.1| peptidoglycan binding domain-containing protein [Brucella ceti B1/94] gi|260920721|gb|EEX87374.1| peptidoglycan binding domain-containing protein [Brucella ceti B1/94] Length = 634 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/285 (28%), Positives = 140/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 341 YDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 399 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 400 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 459 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 460 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 518 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 519 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 576 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 577 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 617 >gi|42522163|ref|NP_967543.1| putative periplamic protein [Bdellovibrio bacteriovorus HD100] gi|39574694|emb|CAE78536.1| putative periplamic protein [Bdellovibrio bacteriovorus HD100] Length = 505 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/338 (27%), Positives = 162/338 (47%), Gaps = 25/338 (7%) Query: 94 WPELPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 WP LP + L LG+ + L+ R+ G P L FD V +AV Q Sbjct: 160 WPALPKVKKTLKLGSKDAILIPLKTRMTQLGY--PMTSLDNVFDDKVVAAVNDIQWNLRF 217 Query: 152 DPSGMVD--SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 P + T + +NV R+RQ+++++ +++ Q RY+ +N+ + V+ Sbjct: 218 KPDSKISPGGKTWKYLNVSCQDRMRQIRLDMEKLR-WFPQHFEDRYIFINLAMSYFSLVD 276 Query: 210 NGKVGLRST---VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR-----Q 261 G S I GR +R++P + +I I+ NP+WV+P +I ++D + ++ + Sbjct: 277 KSGGGFYSMSFRTINGRPERKSPTMKDKIVYIVINPFWVVPPTIFREDKVEEIKNLWPWE 336 Query: 262 DPQYLKDNNIHMIDEKGKEVF-VEEVDWNSPEP---PNFIFRQDPGKINAMASTKIEFYS 317 +Y + + ++ + F +DW + +P N RQ P ++NA+ S K + Sbjct: 337 IREYFDTRHYQVWNKSFTQRFDPASIDWYNMDPNQDANIYIRQSPHRMNALGSLKFMMTN 396 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT--- 374 Y+HDT + LF R +SGCVRV +DL +LLK T W R IE + Sbjct: 397 SYAIYLHDTNQRELFAEPHRLLSSGCVRVEKPVDLAEYLLKGT-EWDRAAIERYMAKPGE 455 Query: 375 --RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 K T V+L ++PV+ V++++ D I++F +D Y Sbjct: 456 VLDKDTKVQLKQQMPVYMVFLTSQLSSDGILRFAEDSY 493 >gi|329890356|ref|ZP_08268699.1| putative peptidoglycan binding domain protein [Brevundimonas diminuta ATCC 11568] gi|328845657|gb|EGF95221.1| putative peptidoglycan binding domain protein [Brevundimonas diminuta ATCC 11568] Length = 518 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 103/363 (28%), Positives = 166/363 (45%), Gaps = 40/363 (11%) Query: 83 AFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPS-----KGLSVAFDA 136 A Y+ I +GGWP I + G S + L RL GDL + KG ++A+ Sbjct: 178 ARYRRIARQGGWPAFRIGGTIEPGTSDPRIPALVARLAAEGDLSAAAAERLKG-NLAYGP 236 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 +E AV+ FQ RHGL G + +T ++ + R RQ+ +NL R ++ L++ + + Sbjct: 237 ELEQAVRSFQTRHGLGSDGRIGGATQRSLTATAEDRARQIALNLER-RRWLKRDLNPERI 295 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 VN AA + ++GK + V+VG QTP L ++ NP W +P I +++ Sbjct: 296 EVNTAAAIMVYWKDGKPVHSNRVVVGTAANQTPSLEKPFASVVANPPWTVPMGIARRE-- 353 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 +L + P YL N++ +V W Q G +++ + K E Sbjct: 354 -ILPKGPGYLAANDM----------YVNADGW---------VVQRAGPKSSLGNVKFELQ 393 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK-TR 375 ++HDTP FN VR + GCVRV++ I LL P R + + + + Sbjct: 394 DSYAIFLHDTPARGAFNLSVRQRSHGCVRVQDAIGFARLLLSPDP--ERLALFDAAQASG 451 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV---HVGI-IPLPE---DHPI 428 +T V + V +Y +A+ + FR+D+Y D +GI + LP+ D PI Sbjct: 452 ETKRVTTGRNIGVRLLYWTAFVDGQGRVAFREDVYKRDAKLADALGIAVNLPQVIADAPI 511 Query: 429 DSD 431 D D Sbjct: 512 DPD 514 >gi|115526100|ref|YP_783011.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115520047|gb|ABJ08031.1| Peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris BisA53] Length = 705 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 92/318 (28%), Positives = 154/318 (48%), Gaps = 28/318 (8%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV- 169 V +LR +L I+ + D +K +DA V +AV+ FQ + +G++D T++A+N P Sbjct: 336 VPQLRAKLGITENADSTK-----YDAKVAAAVRKFQDATDIPVTGVLDDRTVKALNSPKR 390 Query: 170 DLRIRQLQVNLMRIKKLLEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 D +I + VN+ R + L Q +G YV++N+P +L+ ++N + V+ G+ Sbjct: 391 DRQIDIVVVNMERWRWLPRQLGASSLGNAYVILNVPDFTLKVMQNDAAVWTTRVVTGKPG 450 Query: 226 RQ-TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 + TP+L + I NP W +P SII + + L+QDP L + + + + + Sbjct: 451 KHATPMLTETMKYITVNPTWNVPPSIIYNEYLPALQQDPTVLDRMGLKLERNRDGSIHIS 510 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 Q PG+ NA+ + F ++ Y HDTP+ LF R + GC+ Sbjct: 511 ---------------QPPGERNALGRIRFNFPNKFLVYQHDTPDKHLFARDERAFSHGCM 555 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 RV+N LL T RY E + + R +K T +PV+ Y +A+ Sbjct: 556 RVQNPDQYAATLLNITMPNERYSPERIRGMYGRSEIDLKFPTPIPVNITYQTAFVDDSGK 615 Query: 403 IQFRDDIYGLDNVHVGII 420 +Q R DIYG D +G++ Sbjct: 616 LQIRKDIYGRDAAMIGLL 633 >gi|90425452|ref|YP_533822.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris BisB18] gi|90107466|gb|ABD89503.1| Peptidoglycan-binding domain 1 [Rhodopseudomonas palustris BisB18] Length = 730 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 94/322 (29%), Positives = 156/322 (48%), Gaps = 28/322 (8%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-V 169 V +LR +L IS + D S +DA V +AV+ FQ L +G++D T+ A+N P Sbjct: 364 VPQLRAKLGISENPD-----STRYDAKVAAAVRKFQDSADLKETGVLDERTVTALNSPKS 418 Query: 170 DLRIRQLQVNLMR----IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV- 224 D +I + VN+ R + L +G YV++NIP +L+ +++G + V+VG+ Sbjct: 419 DRQIDTVIVNMERWRWLPRVLGAPSLGDAYVILNIPDYTLKVMQHGAPVWTTRVVVGKPG 478 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 + TP+L + I NP W +P SII + + L+QDP L + + + + + Sbjct: 479 NHATPLLTETMKYITVNPTWNVPPSIIYNEYLPALQQDPTVLDRMGLKLERNRDGSIHIS 538 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 Q PG+ NA+ + F ++ Y HDTP+ LF+ R + GC+ Sbjct: 539 ---------------QPPGERNALGRIRFNFPNKFLVYQHDTPDKNLFSRDARAFSHGCM 583 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 RV+N LL RY E++ + + +K AT +PV+ Y +A+ Sbjct: 584 RVQNPDQYAATLLNIAMPNERYTPEKIRGMYGKSEIDLKFATPIPVNLTYQTAFVDDAGK 643 Query: 403 IQFRDDIYGLDNVHVGIIPLPE 424 +Q R D+YG D + I+ P+ Sbjct: 644 LQTRKDVYGRDAAMLAILRNPK 665 >gi|301156058|emb|CBW15529.1| predicted carboxypeptidase [Haemophilus parainfluenzae T3T1] Length = 489 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/243 (31%), Positives = 129/243 (53%), Gaps = 7/243 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + + G + VNIP+ L+ +GKV L S VIVG+ +R+TP+++S Sbjct: 238 KKLALNAQRLRIIPDFENG---IFVNIPSYQLKYYRDGKVLLESRVIVGKNERRTPVMYS 294 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS-PE 292 R++ ++ NP W P +I +D++ L++DP Y +N ++D G + ++W+S Sbjct: 295 RLSNVVVNPPWNAPTRLINEDILPKLKRDPSYATAHNYSILDSNGNTINPHSINWSSIGN 354 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LF+ R +SGCVRV L Sbjct: 355 KFPYRIRQAAGD-SALGNYKFNMPSSDAIYLHDTPNHSLFSKKDRALSSGCVRVEKSDQL 413 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LLK+ WS + ++KT + T PV Y++AW ++ DIY Sbjct: 414 ASILLKEA-GWSEDKKRNALASKKTVSANIRTNDPVFLYYVTAWV-ENGQTHVLPDIYKY 471 Query: 413 DNV 415 D+ Sbjct: 472 DDA 474 >gi|265994887|ref|ZP_06107444.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|262766000|gb|EEZ11789.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] Length = 538 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 142/286 (49%), Gaps = 14/286 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 245 YDPELVSAIKDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 303 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 304 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 363 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 364 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 422 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + ++ Sbjct: 423 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS-------VKN 475 Query: 371 VVK--TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + K + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 476 LDKYFGKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 521 >gi|148258072|ref|YP_001242657.1| hypothetical protein BBta_6864 [Bradyrhizobium sp. BTAi1] gi|146410245|gb|ABQ38751.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 702 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/322 (27%), Positives = 152/322 (47%), Gaps = 28/322 (8%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 S V +LR +L ++ + D + +DA V +AV+ FQ L P+G++D T++A+N Sbjct: 330 SDPRVPKLRAKLGLTENAD-----DIRYDAKVAAAVRKFQESADLKPTGVLDDRTVKALN 384 Query: 167 VPV-DLRIRQLQVNLMR----IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 P D +I + VN+ R + L +G YV++NIP +L+ ++ G + V+ Sbjct: 385 TPKRDKQIDTILVNMERWRWLPRDLGAPALGDAYVILNIPDYTLKVMQRGAQVWTTRVVT 444 Query: 222 GRVDRQ-TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 G+ + TP+L + I NP W +P SII + + L+QDP L + + + Sbjct: 445 GKPGQHATPLLSETMKFITVNPTWNVPPSIIYNEYLPALQQDPTVLDRMGLRLERARDGS 504 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 + + Q PG+ NA+ + F ++ Y HDTP+ LF R + Sbjct: 505 IHIS---------------QPPGEANALGRIRFNFPNKFLVYQHDTPDKHLFAREDRAFS 549 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV--KLATEVPVHFVYISAWSP 398 GC+RV+ LL RY E + ++ + K T +PV+ Y +A+ Sbjct: 550 HGCMRVQYPDQYASVLLNIAMPGERYTPERIRSMYGSSEIDLKFPTPIPVNITYQTAFVD 609 Query: 399 KDSIIQFRDDIYGLDNVHVGII 420 +QFR D+YG D + I+ Sbjct: 610 DAGKLQFRKDVYGRDATMISIL 631 >gi|260582628|ref|ZP_05850417.1| alpha-ketoglutarate decarboxylase [Haemophilus influenzae NT127] gi|260094300|gb|EEW78199.1| alpha-ketoglutarate decarboxylase [Haemophilus influenzae NT127] Length = 489 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 129/241 (53%), Gaps = 7/241 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++S Sbjct: 237 QKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMYS 293 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS-PE 292 +++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 294 KLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIGN 353 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV L Sbjct: 354 KFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQL 412 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIY Sbjct: 413 ASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYDY 470 Query: 413 D 413 D Sbjct: 471 D 471 >gi|260563978|ref|ZP_05834464.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. 16M] gi|265991052|ref|ZP_06103609.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. Rev.1] gi|260153994|gb|EEW89086.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. 16M] gi|263001836|gb|EEZ14411.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. Rev.1] Length = 538 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 142/286 (49%), Gaps = 14/286 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 245 YDPELVSAIKDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 303 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 304 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 363 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 364 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 422 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + ++ Sbjct: 423 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS-------VKN 475 Query: 371 VVK--TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + K + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 476 LDKYFGKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 521 >gi|17987297|ref|NP_539931.1| cell wall degradation protein [Brucella melitensis bv. 1 str. 16M] gi|256044628|ref|ZP_05447532.1| cell wall degradation protein [Brucella melitensis bv. 1 str. Rev.1] gi|17982976|gb|AAL52195.1| cell wall degradation protein [Brucella melitensis bv. 1 str. 16M] Length = 531 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 142/286 (49%), Gaps = 14/286 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 238 YDPELVSAIKDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 296 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 297 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 356 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 357 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 415 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + ++ Sbjct: 416 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS-------VKN 468 Query: 371 VVK--TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + K + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 469 LDKYFGKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 514 >gi|307318578|ref|ZP_07598012.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306895918|gb|EFN26670.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] Length = 631 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 131/277 (47%), Gaps = 15/277 (5%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 V+ FQ +GL G+V +++ A+ +I ++++ M + L +G RYV +N Sbjct: 347 VEAFQKEYGLKADGIVGQASIRALTGGDTTQGKIDKVEI-AMEQARWLPDGLGDRYVFIN 405 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 PA + E G V+VG QT I + NPYW +P+SII +M+ L Sbjct: 406 QPAFTASYTEQGTEQFSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKL 465 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 R DP YL D + ++ G+ V V+W + RQ P NA+ KI F + + Sbjct: 466 RNDPGYL-DRMGYQVEVGGRVVPSTAVNWYG-STNSIAVRQPPSSDNALGELKILFPNAH 523 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV---VKTRK 376 YMHDTP F R + GCVR+ + + +L ++EV + + Sbjct: 524 AIYMHDTPSKSFFKRDQRALSHGCVRLADPRRMAAAVLG-------VSVDEVGMEISGGR 576 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + ++ +VPV+ Y +AW KD +++ DD+Y D Sbjct: 577 NKALPVSAKVPVYVAYFTAWPNKDGTVEYFDDVYERD 613 >gi|256113506|ref|ZP_05454340.1| cell wall degradation protein [Brucella melitensis bv. 3 str. Ether] Length = 531 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 142/286 (49%), Gaps = 14/286 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 238 YDPELVSAIKDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 296 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 297 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 356 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 357 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 415 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + ++ Sbjct: 416 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS-------VKN 468 Query: 371 VVK--TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + K + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 469 LDKYFGKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 514 >gi|113461215|ref|YP_719284.1| hypothetical protein HS_1072 [Haemophilus somnus 129PT] gi|112823258|gb|ABI25347.1| conserved hypothetical protein [Haemophilus somnus 129PT] Length = 475 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/245 (31%), Positives = 134/245 (54%), Gaps = 9/245 (3%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + +L +N R++ + + G + VNIP+ L +GK+ L S VIVG+ R+TP+++ Sbjct: 222 LYKLAINAQRLRIIPDFNNG---IFVNIPSYQLNYYRDGKLVLNSKVIVGKKARKTPVMY 278 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 S+++ I+ NP W+ +I +D++ ++ DP Y+ N+ + D KG+ + +DWN+ Sbjct: 279 SKLSNIVVNPPWIPTPRLINEDIVPKIKLDPDYVARNSYTISDSKGQVIDPSSIDWNTI- 337 Query: 293 PPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 NF + RQ PG +A+ + K S + Y+HDTP LF+ R +SGCVRV Sbjct: 338 GTNFPYRIRQAPGG-SALGNYKFNMPSSDAIYLHDTPNRGLFSKKNRALSSGCVRVEKSD 396 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 L LL + W+ + V+ ++K T + ++ PV+ Y++ W D +++ DIY Sbjct: 397 QLATILLTEA-GWTEERKQNVLNSKKNTSENIRSDNPVYLYYVTTWVEND-VVKTLPDIY 454 Query: 411 GLDNV 415 D V Sbjct: 455 EYDQV 459 >gi|306843862|ref|ZP_07476457.1| cell wall degradation protein [Brucella sp. BO1] gi|306275617|gb|EFM57341.1| cell wall degradation protein [Brucella sp. BO1] Length = 681 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/280 (28%), Positives = 138/280 (49%), Gaps = 12/280 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 373 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 431 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 432 KRYVMVNQPAYRAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 491 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 492 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 550 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 551 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 608 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 + +K+ VPV+ Y +AW D I + DI Sbjct: 609 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDI 644 >gi|300022605|ref|YP_003755216.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299524426|gb|ADJ22895.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 597 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 96/315 (30%), Positives = 144/315 (45%), Gaps = 16/315 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + S V L++R ++ ++G FDA + +AVK FQ GL G V +T Sbjct: 213 LQSKSKSPEVATLKKRFGVAS----AQGEETVFDAALVAAVKTFQASAGLRADGFVGPAT 268 Query: 162 LEAM--NVPVDL--RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 A+ P + RI + N M + + Q++G V VNIPA S+ ++G Sbjct: 269 RAALAGGGPENNADRIAAVIAN-MEEWRWMPQELGATNVFVNIPAFSIRLTKDGAPVFED 327 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V+VG D+QTPI + I+ P W +P SI + ALL + +++ Sbjct: 328 RVVVGTADKQTPIFSKSMKTIVLRPEWNLPDSI---KLTALLSGRS---VEQQGYVVMRN 381 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 G+ + V+W + Q G NA+ K F +++ Y+HDTP LFN VR Sbjct: 382 GRTIDSTRVNWAKANLREYTIFQPSGDDNALGLVKFLFPNKHAVYLHDTPSRHLFNERVR 441 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV-KTRKTTPVKLATEVPVHFVYISAW 396 + GCVRVRN LL + + ++ +V K K V L T +PVH Y + W Sbjct: 442 LYSHGCVRVRNPQVFAQDLLDIDRGAAAFDVKRLVRKGPKDNNVTLETPIPVHVGYFTVW 501 Query: 397 SPKDSIIQFRDDIYG 411 D Q+ D YG Sbjct: 502 VGDDGQPQYFKDYYG 516 >gi|188582120|ref|YP_001925565.1| peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] gi|179345618|gb|ACB81030.1| Peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] Length = 662 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 100/342 (29%), Positives = 159/342 (46%), Gaps = 44/342 (12%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLII----SGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 P+ P+ L LG S V LR R + +G LD + G + A+D V AVK FQ G Sbjct: 292 PDGPV--LKLGMSDPRVPLLRSRFGLEKQAAGTLDAAPGEADAYDGAVADAVKSFQRSRG 349 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNL---MRIKKLLEQKMGLRYVLVNIPAASLEA 207 L SG + +T+ A+ P + + +L M + L ++G YV VN+P L+ Sbjct: 350 LPASGTLTRATVAALANPSVPKTAASEADLLVNMERWRWLPAELGPDYVFVNVPEFKLKV 409 Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 +G + + VIVG+ TPI + + NP W +P SI+ K M+A R Sbjct: 410 FRDGHLRDETRVIVGKPTSPTPIFSGMMEYAVVNPSWYVPPSIL-KQMLASGR------- 461 Query: 268 DNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTP 327 + +GK + RQ PG+ NA+ K F ++++ Y+HDTP Sbjct: 462 -TAGFEVVRRGKTI---------------SLRQPPGERNALGFIKFMFPNQHSVYLHDTP 505 Query: 328 EPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVP 387 LF+ R + GCVRV + +L PTW+ +++++ + T ++L ++P Sbjct: 506 NRSLFSASTRAFSHGCVRVDDPFRFADAVL---PTWTEERLKKLIGKGERT-LRLPEKLP 561 Query: 388 VHFVYISAWSPKDSIIQFR--DDIYGLDN---VHVGIIPLPE 424 VH Y +A D + +R D+YG D +G+ P E Sbjct: 562 VHLAYFTAEV--DDLGSYRTLTDLYGYDGPMKAALGLAPRSE 601 >gi|308050064|ref|YP_003913630.1| ErfK/YbiS/YcfS/YnhG family protein [Ferrimonas balearica DSM 9799] gi|307632254|gb|ADN76556.1| ErfK/YbiS/YcfS/YnhG family protein [Ferrimonas balearica DSM 9799] Length = 459 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 88/323 (27%), Positives = 147/323 (45%), Gaps = 15/323 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLII--SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P++ L LG S + +LR L I L P+ +D + +K +Q +GL +G Sbjct: 139 PLQSLGLGQSHPDLAQLRRALAIRLGEALPPTLQDRPVWDPPFTALLKQYQDSNGLSATG 198 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 +DS+T + RI +Q +L + +L ++ G +LVNIP L + + V L Sbjct: 199 RLDSATRRHLGSVGQDRIAAIQYSLRQWYQLPDRIEGY-AMLVNIPRYELLVLNDEAVEL 257 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 VIVG TP ++S + + NP W P SI++ +++ RQDP L + Sbjct: 258 AVPVIVGSPANPTPKMNSYFSSVTLNPSWTPPMSIVRNELLPGYRQDPTTLHRQGFEWVG 317 Query: 276 EKGKEVFVEEVDWNSPEPPN-------FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 KG+ + W P N + RQ PG+ N + + Y+HDT Sbjct: 318 -KGQS----RLPWTQVTPENVNNVLGRYQLRQKPGRNNPLGKVRFNLAQSRAIYLHDTNN 372 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 P LF R + GCVRV + +LL + + + + + ++ + ++ + V V Sbjct: 373 PRLFRQSQRALSHGCVRVAEYQRVLDYLLANESSGRQRQVAQALQQHDSVTARVGSRVAV 432 Query: 389 HFVYISAWSPKDSIIQFRDDIYG 411 + VY+ AW D+ + DD+YG Sbjct: 433 YLVYMPAWVGPDNRLHLVDDVYG 455 >gi|307946894|ref|ZP_07662229.1| peptidoglycan-binding domain 1 protein [Roseibium sp. TrichSKD4] gi|307770558|gb|EFO29784.1| peptidoglycan-binding domain 1 protein [Roseibium sp. TrichSKD4] Length = 681 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 77/275 (28%), Positives = 136/275 (49%), Gaps = 8/275 (2%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDL-RIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 VK FQ + L G+V +T+ AM + +I ++++ + R ++ L ++G R V +N Sbjct: 393 VKGFQKENKLAADGIVGKNTIRAMVGETNAAKIAKIELAMER-RRWLPDELGERRVFINQ 451 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 PA + E + L V+VG+ QT + + + +NPYW +P SII +M+ L Sbjct: 452 PAFTATFYEGSSLPLSMRVVVGKKSNQTNFFYDNVEIVEYNPYWGVPYSIIVNEMIPKLA 511 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMASTKIEFYSR 318 +P YL + G++V V+W + + RQ PG NA+ KI F ++ Sbjct: 512 ANPYYLDQAGYEVTTPSGRKVSSANVNWYAVASRQQSINVRQYPGAKNALGVVKILFPNK 571 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 ++ YMHDTP LFN R + GCVR+ + + +L S+ ++ + + K Sbjct: 572 HHIYMHDTPAKSLFNKDTRAYSHGCVRLHDPKAMAAAVLGK----SKDYVSQQIAKGKNR 627 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 ++ ++PV+ Y +AW +++ D+Y D Sbjct: 628 QERVEGDLPVYVSYFTAWPNDAGQVEYFADVYDRD 662 >gi|15965611|ref|NP_385964.1| hypothetical protein SMc00150 [Sinorhizobium meliloti 1021] gi|307302730|ref|ZP_07582486.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] gi|15074792|emb|CAC46437.1| Putative membrane protein [Sinorhizobium meliloti 1021] gi|306903094|gb|EFN33685.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] Length = 631 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 131/277 (47%), Gaps = 15/277 (5%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 V+ FQ +GL G+V +++ A+ +I ++++ M + L +G RYV +N Sbjct: 347 VEAFQKEYGLKADGIVGQASIRALTGGDTTQGKIDKVEI-AMEQARWLPDGLGDRYVFIN 405 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 PA + E G V+VG QT I + NPYW +P+SII +M+ L Sbjct: 406 QPAFTASYTEQGTEQFSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKL 465 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 R DP YL D + ++ G+ V V+W + RQ P NA+ KI F + + Sbjct: 466 RNDPGYL-DRMGYQVEVGGRVVPSTAVNWYG-STNSIAVRQPPSSDNALGELKILFPNAH 523 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV---VKTRK 376 YMHDTP F R + GCVR+ + + +L ++EV + + Sbjct: 524 AIYMHDTPSKSFFKRDQRALSHGCVRLADPRRMAAAVLG-------VSVDEVGMEISGGR 576 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + ++ +VPV+ Y +AW KD +++ DD+Y D Sbjct: 577 NKALPVSAKVPVYVSYFTAWPNKDGTVEYFDDVYERD 613 >gi|225852468|ref|YP_002732701.1| peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC 23457] gi|225640833|gb|ACO00747.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC 23457] Length = 510 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 80/285 (28%), Positives = 140/285 (49%), Gaps = 12/285 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA++ +Q G G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 217 YDPELVSAIQDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 275 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 276 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 335 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 336 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 394 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT-PTWSRYHIE 369 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + +Y Sbjct: 395 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTSVKNLDKYF-- 452 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 453 ----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 493 >gi|332186707|ref|ZP_08388450.1| putative peptidoglycan binding domain protein [Sphingomonas sp. S17] gi|332013359|gb|EGI55421.1| putative peptidoglycan binding domain protein [Sphingomonas sp. S17] Length = 476 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 90/297 (30%), Positives = 140/297 (47%), Gaps = 26/297 (8%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 L+I L P + + AV+ Q +G+ P G++ + L +N+ R R + Sbjct: 181 LVILDYLTPDAAQGDRYTPAIGDAVRRMQADYGMKPDGIIGNEALAILNMSDADRARAIA 240 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 V + R++ LE+ + VNI AA L +GK+ V+VG D +TP L S I R Sbjct: 241 VAMERLR-WLERTPPATRIDVNIAAARLSYWRDGKIVDSRRVVVGEPDTETPQLGSPIFR 299 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 ++ NP W +PRSI +K+ L ++ YL+ NN+ + D +I Sbjct: 300 LVANPTWTVPRSIQKKE---LAQKGAGYLRANNMELKD-------------------GWI 337 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 +Q PG N++ K + + + Y+HDTP LF V R + GCVRV + + L Sbjct: 338 VQQ-PGPKNSLGLAKFDMQNDHAIYLHDTPAKPLFAMVQRQRSHGCVRVEDALGFAEMLA 396 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 KD +H +T K T VKL ++PV +Y + KD R+D YG D+ Sbjct: 397 KDEGVVDEWH--RARETGKETFVKLPRQIPVRLLYQTVLFDKDGEPIVRNDPYGWDD 451 >gi|326408985|gb|ADZ66050.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M28] gi|326538698|gb|ADZ86913.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M5-90] Length = 531 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 142/286 (49%), Gaps = 14/286 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA++ +Q G G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 238 YDPELVSAIQDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 296 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 297 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 356 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 357 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 415 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + ++ Sbjct: 416 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS-------VKN 468 Query: 371 VVK--TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + K + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 469 LDKYFGKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 514 >gi|265999484|ref|ZP_05466569.2| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|263094225|gb|EEZ18102.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] Length = 538 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 80/286 (27%), Positives = 142/286 (49%), Gaps = 14/286 (4%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA++ +Q G G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 245 YDPELVSAIQDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 303 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RYV+VN PA E+G+ L V++G QT ++++ ++FNP W +PRSII Sbjct: 304 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNPSWGVPRSIIL 363 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 +M+ + +D YL D N + + GK+V V+W+ + + RQ P N++ Sbjct: 364 NEMLPKVMRDTSYL-DRNGYEVYANGKKVSASAVNWSAVATGKAHIGIRQKPSLDNSLGE 422 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 KI F + ++ YMHDTP F +R + GC+R+ D+ +L + ++ Sbjct: 423 LKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS-------VKN 475 Query: 371 VVK--TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + K + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 476 LDKYFGKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 521 >gi|170741335|ref|YP_001769990.1| peptidoglycan binding domain-containing protein [Methylobacterium sp. 4-46] gi|168195609|gb|ACA17556.1| Peptidoglycan-binding domain 1 protein [Methylobacterium sp. 4-46] Length = 654 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 79/274 (28%), Positives = 133/274 (48%), Gaps = 19/274 (6%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 A++ FQ GL +G++D T+ A+ P R + M + L ++G +YV VN Sbjct: 300 GAIERFQRERGLAATGILDPRTVAALAGPSPGRQEADLLANMERWRWLPAELGRKYVWVN 359 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IP + +E G+V + VIVG+ D TPI ++ + NP W +P SI++ + + L Sbjct: 360 IPDLKVRVMEGGRVVDEARVIVGKPDSPTPIFSGEMSYAVVNPSWNVPPSILKNEFLPRL 419 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 +DP Y ++ KG + V RQ PG+ NA+ K F + + Sbjct: 420 ARDPSYAARLGYQVV-RKGNSIAV---------------RQPPGERNALGFIKFMFPNEH 463 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 Y+HDTP LF R + GCVRV + +L PTW +++++ + T Sbjct: 464 AVYLHDTPNRTLFARGARALSHGCVRVDDPFRFAEVVL--GPTWPTERLKKLIGKGERT- 520 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 V L ++PVH Y + + + ++ +D+YG++ Sbjct: 521 VMLPEKLPVHLAYFTLVADEAGGLREAEDLYGIN 554 >gi|92116782|ref|YP_576511.1| peptidoglycan binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91799676|gb|ABE62051.1| Peptidoglycan-binding domain 1 [Nitrobacter hamburgensis X14] Length = 775 Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 90/322 (27%), Positives = 155/322 (48%), Gaps = 28/322 (8%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-V 169 V ++R +L ++ + D FDA V +AV+ FQ R+ L P G+ ++T+ A+N P Sbjct: 405 VPQIRAKLGVTQNPD-----DAHFDADVAAAVREFQTRNHLQPDGIAGNNTIRALNGPRK 459 Query: 170 DLRIRQLQVNLMR----IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 +I + VN+ R ++L +G Y ++NIP +L+ +++G + V+VG+ Sbjct: 460 GHQIDTIIVNMERWRWLPRELGAPSLGNAYAILNIPDYTLKVMQHGAQLWSTRVVVGKPG 519 Query: 226 -RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 TP+L + I NP W +P SII K+ + L+QDP L+ + + ++ + + Sbjct: 520 IHATPLLTETMKYITVNPTWNVPPSIIYKEYLPALQQDPTVLERMGLKLERDRNGGIHIS 579 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 Q PG NA+ + F ++ Y HDTP+ LF R + GC+ Sbjct: 580 ---------------QPPGDRNALGRIRFNFPNKFLVYQHDTPDKYLFAKEKRAFSHGCM 624 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 RV+N LL Y E++ + RK +K T +PV+ Y +A+ Sbjct: 625 RVQNPDQYAATLLNIALPQEHYTPEKIRGMYGRKEFDIKFPTPIPVNITYQTAFVDHAGK 684 Query: 403 IQFRDDIYGLDNVHVGIIPLPE 424 +Q R D+YG D + ++ P+ Sbjct: 685 LQIRPDVYGSDAKMLALLRNPK 706 >gi|299132062|ref|ZP_07025257.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] gi|298592199|gb|EFI52399.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] Length = 710 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/302 (29%), Positives = 147/302 (48%), Gaps = 37/302 (12%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV-DLRIRQLQVNLMR----IKKLLE 188 +DA V +AV+ FQ + L +G++D+ T+ A+N P D +I ++VN+ R + L Sbjct: 365 YDATVAAAVRKFQSANDLKATGVLDNHTVAALNGPRNDRKIDIIRVNMERWRWLPRDLGA 424 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ-TPILHSRINRIMFNPYWVIP 247 +G YV++NIP SL+ + NG ++ V+VG+ + TP+L + I NP W +P Sbjct: 425 PALGDAYVILNIPDYSLQLMHNGATAWKTRVVVGKPGKHATPLLTETMKYITVNPTWNVP 484 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SII + + L+QDP L+ + + + + Q PG+ NA Sbjct: 485 PSIIYNEYLPALQQDPTVLERMGLKLQRNPDGTIRIS---------------QPPGEANA 529 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN-----IIDLDVWLLKD--T 360 + + F ++ Y HDTP+ LF R + GC+RV+N L + L KD T Sbjct: 530 LGRIRFNFPNKFLVYQHDTPDKYLFAKSERAFSHGCMRVQNPDQYAATILGIALPKDHYT 589 Query: 361 PTWSR--YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 P R Y E+ + L T +PV+ Y +A+ ++FR DIYG D + Sbjct: 590 PEKIRSMYGHNEIN-------INLPTPLPVNITYQTAFVDDAGKLEFRKDIYGRDATMIK 642 Query: 419 II 420 ++ Sbjct: 643 LL 644 >gi|227822250|ref|YP_002826221.1| peptidoglycan binding protein, putative [Sinorhizobium fredii NGR234] gi|227341250|gb|ACP25468.1| peptidoglycan binding protein, putative [Sinorhizobium fredii NGR234] Length = 630 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/276 (29%), Positives = 128/276 (46%), Gaps = 9/276 (3%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 S V+ FQ HGL G+V +++ + +I +L++ M + L +G RYV Sbjct: 343 SLVEAFQKEHGLKADGVVGQASIRVLTGGDTTASKIDKLEI-AMEQARWLPNDLGNRYVF 401 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 +N PA ++G V+VG QT H I + NPYW +P+SII +M+ Sbjct: 402 INQPAFMAYYTDHGAEQFSMRVVVGSKANQTYFFHDEIQTVEVNPYWGVPQSIIVNEMLP 461 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 LR DP YL D + ++ G+ V VDW + RQ P NA+ KI F + Sbjct: 462 KLRSDPSYL-DRMGYQVEVGGRVVPSYAVDWYG-STNSVAVRQPPSSDNALGELKILFPN 519 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 + YMHDTP F R + GCVR+ + +L S + + + Sbjct: 520 SHAIYMHDTPSKSFFKRDQRALSHGCVRLAEPRRMAAAVL----GVSMDDVGNEIAQGRN 575 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + + +VPV+ Y +AW KD +++ +D+Y D Sbjct: 576 RALPVPQKVPVYVSYFTAWPNKDGKVEYFNDVYERD 611 >gi|332188328|ref|ZP_08390054.1| putative peptidoglycan binding domain protein [Sphingomonas sp. S17] gi|332011641|gb|EGI53720.1| putative peptidoglycan binding domain protein [Sphingomonas sp. S17] Length = 428 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 95/333 (28%), Positives = 152/333 (45%), Gaps = 31/333 (9%) Query: 95 PELPI----RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 P PI +P+ G S + + +L+ LD + +V + + +AVK Q +G Sbjct: 107 PPTPIPDAGKPIEPGKSDPRIPAIAAQLVAFDYLDKAAAGAV-YTPPMVAAVKRMQADYG 165 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 +DP GM+ + LE +N+ R R + VN+ R++ LE+ + VN+ AA L + Sbjct: 166 IDPDGMIGTDALEILNLSDADRARAIAVNMERLR-WLERNPPATRIDVNLAAARLAYWRD 224 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 GK+ V+VG + TP L S I R++ NP W +PRSI +K++ + YL+ NN Sbjct: 225 GKLVDTRKVVVGEPETATPQLGSPILRLVANPTWTVPRSIQRKELAG---KGAGYLRRNN 281 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 + D +I +Q PG NA+ K + + + Y+HDTP Sbjct: 282 MVWKD-------------------GWIVQQ-PGPKNALGLVKFDMQNEQSIYLHDTPAKA 321 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 LF+ V R + GCVRV + + L +D + +H T K + V L VPV Sbjct: 322 LFSEVQRQRSHGCVRVEDALGFAEMLARDQGVDAEWH--RARATGKESYVALPQPVPVRM 379 Query: 391 VYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 +Y + R D YG ++ + P Sbjct: 380 LYQTVLFDDSGEPVVRSDPYGWNDRVASALGFP 412 >gi|170717815|ref|YP_001784877.1| hypothetical protein HSM_1557 [Haemophilus somnus 2336] gi|168825944|gb|ACA31315.1| conserved hypothetical protein [Haemophilus somnus 2336] Length = 475 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/245 (30%), Positives = 134/245 (54%), Gaps = 9/245 (3%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + +L +N R++ + + G + VNIP+ L +G++ L S VIVG+ R+TP+++ Sbjct: 222 LYKLAINAQRLRIIPDFNNG---IFVNIPSYQLNYYRDGELVLNSKVIVGKKARKTPVMY 278 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 S+++ I+ NP W+ +I +D++ ++ DP Y+ N+ + D KG+ + ++WN+ Sbjct: 279 SKLSNIVVNPPWIPTPRLINEDIVPKIKLDPDYVARNSYTISDSKGQVIDPSSINWNTI- 337 Query: 293 PPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 NF + RQ PG +A+ + K S + Y+HDTP LF+ R +SGCVRV Sbjct: 338 GTNFPYRIRQAPGG-SALGNYKFNMPSSDAIYLHDTPNRGLFSKKNRALSSGCVRVEKSD 396 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 L LL + W+ + V+ ++K T + ++ PV+ Y++ W D +++ DIY Sbjct: 397 QLATILLTEA-GWTEERKQNVLNSKKNTSENIRSDNPVYLYYVTTWVEND-VVKTLPDIY 454 Query: 411 GLDNV 415 D V Sbjct: 455 EYDQV 459 >gi|192293029|ref|YP_001993634.1| peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris TIE-1] gi|192286778|gb|ACF03159.1| Peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris TIE-1] Length = 724 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 91/318 (28%), Positives = 150/318 (47%), Gaps = 28/318 (8%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV- 169 V +LR RL ++ + D S +DA V +AV+ FQ L SG++D T++A+N P Sbjct: 354 VPQLRARLGVTENPD-----STTYDATVAAAVRKFQDHADLKASGVLDERTVKALNTPKR 408 Query: 170 DLRIRQLQVNLMR----IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 D I + VN+ R + L +G YV++NIP +L+ +++G + V+ G+ Sbjct: 409 DRTIDTIIVNMERWRWLPRDLGAPSLGDAYVILNIPDYTLKVMQHGAEVWTTRVVTGKPG 468 Query: 226 RQ-TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 + TP+L + I NP W +P SII + + L+QDP L + + + + + Sbjct: 469 KHATPLLTETMKYITVNPTWNVPPSIIYNEYLPALQQDPTVLDRMGLKLERNRDGSIHIS 528 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 Q PG+ NA+ + F ++ Y HDTP+ LF R + GC+ Sbjct: 529 ---------------QPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAREERAFSHGCM 573 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 RV+N LL Y +V + R +K T +PV+ Y +A+ Sbjct: 574 RVQNPDVYASTLLNIAMPEKDYTPAKVRAMYGRSEVDLKFPTPIPVNITYQTAFVDDAGK 633 Query: 403 IQFRDDIYGLDNVHVGII 420 +Q R D+YG D +G++ Sbjct: 634 LQLRKDVYGRDAAMLGLL 651 >gi|300024880|ref|YP_003757491.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526701|gb|ADJ25170.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 557 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 124/239 (51%), Gaps = 2/239 (0%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L+ N M + + + MG YVL NIP ++G++ + ++ G VD+++ I Sbjct: 252 KRLRAN-MEMWRWMWPDMGDFYVLNNIPEFMQYVYKDGEIIRSAKIVAGEVDKKSTIFSR 310 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 + ++ P W +P SI+ ++ L + ++ + + + G+ V + DW+S + Sbjct: 311 PLKYVVLRPAWRVPESIMVNELWPSLIRGGGLMRQYGLQLQTKDGRRVDWRQYDWSSTDI 370 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 NFI Q PG + + K F S++ +MHDTP+ +F R + GC+RV+N + L Sbjct: 371 RNFIVLQPPGPKSVLGRVKFSFPSQHTIFMHDTPDKWMFRPAQRTLSHGCLRVQNPMQLA 430 Query: 354 VWLLKDTPTWSRYHIEEVVKTRK-TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 +LK+ W I E+ ++ V ++ E+P+H VY +AW D ++ +D+YG Sbjct: 431 EMVLKEDKGWDAAKIAELDRSGPLNNEVPISKEIPIHLVYFTAWVTDDGKLKTFNDVYG 489 >gi|27382242|ref|NP_773771.1| hypothetical protein blr7131 [Bradyrhizobium japonicum USDA 110] gi|27355413|dbj|BAC52396.1| blr7131 [Bradyrhizobium japonicum USDA 110] Length = 735 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 88/318 (27%), Positives = 153/318 (48%), Gaps = 28/318 (8%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV- 169 V +LR +L I+ + ++ +DA V AV+ FQ + +G++D T++A+N P Sbjct: 367 VPQLRAKLGITENASDTR-----YDAAVAEAVRKFQNGAEIKATGILDDKTVKALNTPKR 421 Query: 170 DLRIRQLQVNLMRIKKLLEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 D +I + VN+ R + L +G YV++NIP +L+ ++ G+ + V+ G+ Sbjct: 422 DKQIDTVLVNMERWRWLPRDLGVPSLGDAYVILNIPDYTLKVMQRGQPVWTTRVVTGKPG 481 Query: 226 RQ-TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 + TP+L + I NP W +P SI+ + + L+QDP L+ + + + V + Sbjct: 482 QHATPLLTETMKYITVNPTWNVPPSIVYNEYLPALQQDPTVLQRMGLKLEQNRDGSVHIS 541 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 Q PG+ NA+ + F ++ Y HDTP+ LF R + GC+ Sbjct: 542 ---------------QPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAKEDRAFSHGCM 586 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 RV+N LL +Y E V + + +K T +PV+ Y +A+ Sbjct: 587 RVQNPDQYASVLLNIAMPNEKYTPERVRSMYGKSEIDLKFPTPIPVNITYQTAFVDDAGK 646 Query: 403 IQFRDDIYGLDNVHVGII 420 +QFR D+YG D+ + I+ Sbjct: 647 LQFRKDVYGRDSTMINIL 664 >gi|316935702|ref|YP_004110684.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] gi|315603416|gb|ADU45951.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] Length = 743 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 92/318 (28%), Positives = 152/318 (47%), Gaps = 28/318 (8%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV- 169 V +LR RL ++ + D S +DA V +AV+ FQ L +G++D T++A+N P Sbjct: 373 VPQLRARLGVTENTD-----SATYDAAVAAAVRKFQHSADLKATGVLDDRTVKALNTPKR 427 Query: 170 DLRIRQLQVNLMRIKKLLEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 D I + VN+ R + L Q + YV++N+P +L+ ++NG+ + V+VG+ Sbjct: 428 DRTIDTILVNMERWRWLPRQLGAPALDDAYVILNVPDYTLKLMQNGEQVWSTRVVVGKPG 487 Query: 226 RQ-TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 + TP+L + I NP W +P SII + + L+QDP L + + + + + Sbjct: 488 KHATPLLTETMKYITVNPTWNVPPSIINNEYLPALQQDPTVLDRMGLKLSRNRDGSIHIS 547 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 Q PG+ NA+ + F ++ Y HDTP+ LF R + GC+ Sbjct: 548 ---------------QPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFGRDERAFSHGCM 592 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 RV+N LL Y + + R +K AT +PV+ Y +A+ D Sbjct: 593 RVQNPDQYAAALLNIAMPDKNYTPARIRSMYGRSEVDLKFATPIPVNITYQTAFVDDDGK 652 Query: 403 IQFRDDIYGLDNVHVGII 420 +Q R DIYG D + ++ Sbjct: 653 LQLRKDIYGRDAAMLALL 670 >gi|163852171|ref|YP_001640214.1| peptidoglycan binding domain-containing protein [Methylobacterium extorquens PA1] gi|163663776|gb|ABY31143.1| Peptidoglycan-binding domain 1 protein [Methylobacterium extorquens PA1] Length = 646 Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 99/330 (30%), Positives = 155/330 (46%), Gaps = 43/330 (13%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLII----SGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 P+ P+ L LG S V LR R + +G LD + G + A+D V AVK FQ G Sbjct: 275 PDGPV--LKLGMSDPRVPLLRSRFGLDASAAGTLDSAPGEADAYDRSVADAVKNFQRSRG 332 Query: 151 LDPSGMVDSSTLEAM---NVP-VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 L +G + +T+ A+ +VP + VN+ R + L ++G YV VN+P L+ Sbjct: 333 LPANGTLTRATVAALVNSSVPKTSASEADILVNMERWR-WLPPELGPNYVFVNVPEFKLK 391 Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 +G+V + VIVG+ TP + + NP W +P SI+ K M+A Sbjct: 392 VFRDGQVRDETRVIVGKPTSPTPTFSGMMEYAVVNPSWYVPPSIL-KQMLA--------- 441 Query: 267 KDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT 326 G+ E V N RQ PG+ NA+ K F +++ Y+HDT Sbjct: 442 ----------SGRTAGFEVVRRGG----NISLRQPPGERNALGFIKFMFPNQHAVYLHDT 487 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P LF+ R + GCVRV + +L PTW++ +++++ + T ++L ++ Sbjct: 488 PNRSLFSASTRAFSHGCVRVDDPFRFADAVL---PTWTQERLKKLIGKGERT-LRLPEKL 543 Query: 387 PVHFVYISAWSPKDSIIQFRD--DIYGLDN 414 PVH Y +A D + +R D+YG D Sbjct: 544 PVHLAYFTAEV--DDLGSYRTLPDLYGYDG 571 >gi|288959756|ref|YP_003450096.1| hypothetical protein AZL_a00210 [Azospirillum sp. B510] gi|288912064|dbj|BAI73552.1| hypothetical protein AZL_a00210 [Azospirillum sp. B510] Length = 545 Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 87/304 (28%), Positives = 147/304 (48%), Gaps = 12/304 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V +L RLI G L P+ + +F+ VE+AV+ FQ GL P G V T +A++ Sbjct: 172 VGKLSRRLIELGLL-PADKWTDSFNDDVEAAVRAFQTTEGLQPDGKVGEVTRQALDR-TP 229 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 + L + + + +LVN+P S+ +E+G+ +VGR R+TP+ Sbjct: 230 AQTVALLRRAAAAMRAQQASIPDTSILVNLPGQSVTLIEHGRPTFTMRAVVGRPSRKTPL 289 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF-VEEVDWN 289 L ++ + NP W +P +++ +D + LR+ N + +D G EV + V+W Sbjct: 290 LQDKVTSVTINPTWTVPPTVLSEDKLPALRKKGTTGIKNAVVYLD--GAEVASTQSVNWW 347 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 S +P Q PG NA+ + + + ++H T +P LF+ +R +SGCVR+ + Sbjct: 348 SVDPGRVRIVQKPGDDNALGRFRFNLTNGDGIFLHGTNDPRLFSRDLRAASSGCVRLEDA 407 Query: 350 IDLDVWLL---KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 + LL K TP I + + T T ++L +PV FVY +A +++ Sbjct: 408 RLMAETLLGAAKVTP----AGIGQQLDTGDTKTIRLPVAIPVRFVYWNASVDTAGVVRVH 463 Query: 407 DDIY 410 DIY Sbjct: 464 PDIY 467 >gi|39937248|ref|NP_949524.1| hypothetical protein RPA4188 [Rhodopseudomonas palustris CGA009] gi|39651106|emb|CAE29629.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] Length = 724 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 90/318 (28%), Positives = 149/318 (46%), Gaps = 28/318 (8%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV- 169 V +LR RL ++ + D S +DA V +AV+ FQ L SG++D T++A+N P Sbjct: 354 VPQLRARLGVTENPD-----STTYDATVAAAVRKFQDHADLKASGVLDERTVKALNTPKR 408 Query: 170 DLRIRQLQVNLMR----IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 D I + VN+ R + L +G YV++NIP +L+ +++G + V+ G+ Sbjct: 409 DRTIDTIIVNMERWRWLPRDLGAPSLGDAYVILNIPDYTLKVMQHGAEVWTTRVVTGKPG 468 Query: 226 RQ-TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 + TP+L + I NP W +P SII + + L+QDP L + + + + + Sbjct: 469 KHATPLLTETMKYITVNPTWNVPPSIIYNEYLPALQQDPTVLDRMGLKLERNRDGSIHIS 528 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 Q PG+ NA+ + F ++ Y HDTP+ LF R + GC+ Sbjct: 529 ---------------QPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAREERAFSHGCM 573 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 RV+N LL Y +V + R +K T +PV+ Y +A+ Sbjct: 574 RVQNPDVYASTLLNIAMPEKDYTPAKVRAMYGRSEVDLKFPTPIPVNITYQTAFVDDAGK 633 Query: 403 IQFRDDIYGLDNVHVGII 420 +Q R D+YG D + ++ Sbjct: 634 LQLRKDVYGRDAAMLALL 651 >gi|218530929|ref|YP_002421745.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|218523232|gb|ACK83817.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] Length = 648 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 98/330 (29%), Positives = 155/330 (46%), Gaps = 43/330 (13%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLII----SGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 P+ P+ L LG S V LR R + +G LD + G + A+D V AVK FQ G Sbjct: 277 PDGPV--LKLGMSDPRVPLLRSRFGLDASAAGTLDSAPGEADAYDRAVADAVKNFQRSRG 334 Query: 151 LDPSGMVDSSTLEAM---NVP-VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 L +G + +T+ A+ +VP + VN+ R + L ++G YV VN+P L+ Sbjct: 335 LPANGTLTRATVAALASSSVPKTSASEADILVNMERWR-WLPPELGPNYVFVNVPEFKLK 393 Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 +G+V + VIVG+ TP + + NP W +P SI+ K M+A Sbjct: 394 VFRDGQVRDETRVIVGKPTSPTPTFSGMMEYAVVNPSWYVPPSIL-KQMLA--------- 443 Query: 267 KDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT 326 G+ E V N RQ PG+ NA+ K F +++ Y+HDT Sbjct: 444 ----------SGRTAGFEVVRRGG----NISLRQPPGERNALGFIKFMFPNQHAVYLHDT 489 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P LF+ R + GCVRV + +L P+W++ +++++ + T ++L ++ Sbjct: 490 PNRSLFSASTRAFSHGCVRVDDPFRFADAVL---PSWTQERLKKLIGKGERT-LRLPEKL 545 Query: 387 PVHFVYISAWSPKDSIIQFRD--DIYGLDN 414 PVH Y +A D + +R D+YG D Sbjct: 546 PVHLAYFTAEV--DDLGSYRTLPDLYGYDG 573 >gi|254561917|ref|YP_003069012.1| hypothetical protein METDI3518 [Methylobacterium extorquens DM4] gi|254269195|emb|CAX25161.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 646 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 98/330 (29%), Positives = 155/330 (46%), Gaps = 43/330 (13%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLII----SGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 P+ P+ L LG S V LR R + +G LD + G + A+D V AVK FQ G Sbjct: 275 PDGPV--LKLGMSDPRVPLLRSRFGLDASAAGTLDSAPGEADAYDRAVADAVKNFQRSRG 332 Query: 151 LDPSGMVDSSTLEAM---NVP-VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 L +G + +T+ A+ +VP + VN+ R + L ++G YV VN+P L+ Sbjct: 333 LPANGTLTRATVAALASSSVPKTSASEADILVNMERWR-WLPPELGPNYVFVNVPEFKLK 391 Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 +G+V + VIVG+ TP + + NP W +P SI+ K M+A Sbjct: 392 VFRDGQVRDETRVIVGKPTSPTPTFSGMMEYAVVNPSWYVPPSIL-KQMLA--------- 441 Query: 267 KDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT 326 G+ E V N RQ PG+ NA+ K F +++ Y+HDT Sbjct: 442 ----------SGRTAGFEVVRRGG----NISLRQPPGERNALGFIKFMFPNQHAVYLHDT 487 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P LF+ R + GCVRV + +L P+W++ +++++ + T ++L ++ Sbjct: 488 PNRSLFSASTRAFSHGCVRVDDPFRFADAVL---PSWTQERLKKLIGKGERT-LRLPEKL 543 Query: 387 PVHFVYISAWSPKDSIIQFRD--DIYGLDN 414 PVH Y +A D + +R D+YG D Sbjct: 544 PVHLAYFTAEV--DDLGSYRTLPDLYGYDG 571 >gi|254418463|ref|ZP_05032187.1| Putative peptidoglycan binding domain protein [Brevundimonas sp. BAL3] gi|196184640|gb|EDX79616.1| Putative peptidoglycan binding domain protein [Brevundimonas sp. BAL3] Length = 497 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 89/342 (26%), Positives = 152/342 (44%), Gaps = 43/342 (12%) Query: 85 YQDILSRGGWPELPIRPLHLGN------SSVSVQRLRERLIISGDLDPSKGLSVA----- 133 Y+ I RGGWP P LG S + L RL + GDL + V Sbjct: 160 YRAIADRGGWP-----PFALGATIEPFASDPRLPALLPRLRVEGDLTDAAAAMVGPSGGD 214 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + ++ AV++FQ+RHGL+ + +T A+++ + R RQ+ +NL R ++ L++ + Sbjct: 215 YGSVLQEAVRVFQVRHGLEADARIGPATQRALSISAEARARQIALNLER-RRWLKRDVAP 273 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 + VN A+ + ++G+ V+ G D TP L ++ NP W +P SI Q+ Sbjct: 274 ERIEVNTAASIMVYWKDGRPVHSMRVVTGDADNATPSLERPFASVVANPPWTVPTSIAQR 333 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + +L + Y++ NN+ + N + Q G A+ K Sbjct: 334 E---ILPRGAGYMRANNMTI--------------------QNGMVVQRAGPNAALGQVKF 370 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT-WSRYHIEEVV 372 E ++HDTP F+ R + GCVRV++ + LL P +R+ + + Sbjct: 371 ELQDSYAIFLHDTPSRGAFDQSFRHLSHGCVRVQDAVGFARLLLAPDPERLARF--DAAL 428 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + +T V + V +Y +A+ + FRDDIY D Sbjct: 429 DSGQTVRVATGRPIDVRLLYWTAFLDGQGRVAFRDDIYRRDT 470 >gi|240139503|ref|YP_002963978.1| hypothetical protein MexAM1_META1p2949 [Methylobacterium extorquens AM1] gi|240009475|gb|ACS40701.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 648 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 97/330 (29%), Positives = 155/330 (46%), Gaps = 43/330 (13%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLII----SGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 P+ P+ L LG S V LR R + +G LD + G + A+D V AVK FQ G Sbjct: 277 PDGPV--LKLGMSDPRVPLLRSRFGLDASAAGTLDSAPGEADAYDRAVADAVKNFQRSRG 334 Query: 151 LDPSGMVDSSTLEAM---NVP-VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 L +G + +T+ A+ +VP + VN+ R + L ++G YV VN+P L+ Sbjct: 335 LPANGTLTRATVAALASSSVPKTSASEADILVNMERWR-WLPPELGPNYVFVNVPEFKLK 393 Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 +G++ + VIVG+ TP + + NP W +P SI+ K M+A Sbjct: 394 VFRDGQMRDETRVIVGKPTSPTPTFSGMMEYAVVNPSWYVPPSIL-KQMLA--------- 443 Query: 267 KDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT 326 G+ E V N RQ PG+ NA+ K F +++ Y+HDT Sbjct: 444 ----------SGRTAGFEVVRRGG----NISLRQPPGERNALGFIKFMFPNQHAVYLHDT 489 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P LF+ R + GCVRV + +L P+W++ +++++ + T ++L ++ Sbjct: 490 PNRSLFSASTRAFSHGCVRVDDPFRFADAVL---PSWTQERLKKLIGKGERT-LRLPEKL 545 Query: 387 PVHFVYISAWSPKDSIIQFR--DDIYGLDN 414 PVH Y +A D + +R D+YG D Sbjct: 546 PVHLAYFTAEV--DDLGSYRTLSDLYGYDG 573 >gi|42522877|ref|NP_968257.1| putative peptidoglycan-binding protein [Bdellovibrio bacteriovorus HD100] gi|39574073|emb|CAE79250.1| putative peptidoglycan-binding protein [Bdellovibrio bacteriovorus HD100] Length = 526 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 94/342 (27%), Positives = 156/342 (45%), Gaps = 22/342 (6%) Query: 88 ILSRGGWPEL--PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 +L G W + +PL LG + +L+ERL G S ++ FD + A+ Sbjct: 175 LLETGLWENITPAKKPLSLGKKDPVIIKLKERLRQLGYRIDS--MNDTFDQDMLIAINDI 232 Query: 146 QMRHGLDPSGMVD--SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 Q+ + P G++ T +V + R+ QLQ ++ +++ Q + R++ VN + Sbjct: 233 QLNLKMKPDGVISPGGRTWRFFSVSLLDRLSQLQADMEQLR-WFPQNLEDRHIFVNTAFS 291 Query: 204 SLEAVEN-GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + + + I G +R+TP L RI ++ NP W IP ++ D + +L++ Sbjct: 292 HFMMTDKKNNISMSFKAINGTAERKTPTLRDRITYLVMNPTWTIPPTVFLNDKVEILKKL 351 Query: 263 P-----QYLKDNNIHMIDEK-GKEVFVEEVDWNSPEPP--NFIFRQDPGKINAMASTKIE 314 +Y DN + + + +DW S + NF RQ P NA+ K Sbjct: 352 DTKGIRKYFTDNRFEVYTADFSRTIDPTSIDWKSIKSSSVNFYIRQKPSYNNALGVVKFM 411 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 + Y+HDT + LF R +SGCVR+ +DL +LL T WSR IE V Sbjct: 412 MTNPYAIYLHDTNQRDLFGEAQRLRSSGCVRLEKPLDLAEYLLAGT-QWSRPQIENFVVK 470 Query: 375 R-----KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 K T V L +PV+ V +++ D +I+F +D+YG Sbjct: 471 EGQLVDKETRVDLKEPMPVYLVPVTSQMNSDGVIRFVEDVYG 512 >gi|116750212|ref|YP_846899.1| peptidoglycan binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116699276|gb|ABK18464.1| Peptidoglycan-binding domain 1 protein [Syntrophobacter fumaroxidans MPOB] Length = 587 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 100/351 (28%), Positives = 154/351 (43%), Gaps = 43/351 (12%) Query: 81 AIAFYQDILSRGGWPEL----PIRPLHLGNSSVSVQ-RLRERLIISGDLDPSKGLSVAFD 135 A+A Y+D+ + ++ +RP GN+ +Q RLR+ G++ + FD Sbjct: 250 ALARYRDLAANTTQQQVRAPSTMRPGESGNAVRDLQKRLRQEDFYRGEI------TGTFD 303 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ--VNLMRIKKLLEQKMGL 193 A + AVK FQ H ++P G V T E +N+P + + +NL+R + + Sbjct: 304 AATQQAVKRFQAAHQIEPDGAVGQRTREWLNMPFKQKAEMIAHGINLLRQSQT---RRSD 360 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRV-------------DRQTPILHSRINRIMF 240 RYV +NIP +LE ++G+ VIVG+ + QTP L S I +++ Sbjct: 361 RYVRINIPQFALEYYKDGQSLSSHRVIVGKASGKKVKVLGKWMRENQTPTLTSNIEQVII 420 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP W + I+ ++ A DPQY + G W P +F Q Sbjct: 421 NPRWYV-SDRIRLELDAQAGSDPQYFARH--------GYVQMASLYPWGQPR----LF-Q 466 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N + K EF + Y+HDT + LF R + GC+RV L LLKD Sbjct: 467 KPGPKNPLGQIKFEFPNPYAVYLHDTNQKSLFQRTRRDFSHGCIRVEKAKHLAHLLLKDD 526 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 E + + + +KLAT VP+ Y+ +D + F D YG Sbjct: 527 QNPLADKTEPYLSSDRQLFIKLATPVPIIIEYLPVSCNEDGQVIFFGDPYG 577 >gi|182677142|ref|YP_001831288.1| peptidoglycan binding domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182633025|gb|ACB93799.1| Peptidoglycan-binding domain 1 protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 624 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 88/320 (27%), Positives = 145/320 (45%), Gaps = 28/320 (8%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 PL +G V +R RL + G LD + G S +D+ V AV FQ +GL SG++ Sbjct: 311 PLRVGMRDPRVALIRARLSLDGKLDKGQTENGASEIYDSEVSMAVADFQRANGLPASGVL 370 Query: 158 DSSTLEAMN------VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 T ++ P+ + + M + + +G + VN+P + +E Sbjct: 371 TPQTSAILSGARLSATPLSPHVEHEILANMERWRWMPHDLGHDRIEVNLPDFEVAVIEKD 430 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 +V R V++G+ + TPI + ++ NPYW +P SI++K+M+ L +P YL Sbjct: 431 EVVSRHRVVIGKEETPTPIFSHVMQFLIVNPYWNVPASILKKEMLPKLAANPNYL----- 485 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 H + G EVF + + + RQ PG+ NA+ K F + Y+HDTP Sbjct: 486 HRL---GYEVFKRDG--------HLVVRQPPGERNALGRIKFMFPNDYAVYLHDTPSKHY 534 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 F R + GCVRV +L P WS I+ + ++ + L +P+H Sbjct: 535 FEEDKRAFSHGCVRVDEPYHFAEAVL--GPKWSESRIKGLFGEKERY-ITLPKPLPIHLE 591 Query: 392 YISAWSPKDSIIQFRDDIYG 411 Y +A + + +D+YG Sbjct: 592 YFTATVDRFGHLHLSEDVYG 611 >gi|327405461|ref|YP_004346299.1| ErfK/YbiS/YcfS/YnhG family protein [Fluviicola taffensis DSM 16823] gi|327320969|gb|AEA45461.1| ErfK/YbiS/YcfS/YnhG family protein [Fluviicola taffensis DSM 16823] Length = 535 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 85/324 (26%), Positives = 150/324 (46%), Gaps = 11/324 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 P + +S V+ +E LI G LDP K +F A+ FQ +GL G++ Sbjct: 212 PALVEDSLRCVELSKESLIDKGYLDPKKNDDESF----WDAMSRFQADNGLKADGVIGIY 267 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T +++N V + + +++ R + RY+ VNIP L N + V+ Sbjct: 268 TRKSLNESVRFKCHRAILSMERWR--WRAPFPDRYLWVNIPEYKLRLFYNDSLLSEHRVV 325 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VG+ + QTP L S++ I+ PYW P +I K+ + ++ + Y NN + + E Sbjct: 326 VGKPENQTPELSSKLRAIISLPYWTQPHTIASKEFLPAIQNNSNYAAKNN-YKVYRGETE 384 Query: 281 VFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 V ++W + NF F RQ+PG NA+ K EF ++ Y+HDTP FN +R Sbjct: 385 VDPTTINWKRYKEKNFPFRVRQEPGSDNALGLVKFEFNNKFGVYIHDTPSKGFFNKDIRA 444 Query: 339 ETSGCVRVRNIIDLDVWLLK--DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 + GC+R L ++L D +R ++ ++ ++ + L + + YI+ Sbjct: 445 YSHGCMRCELPDSLARFILTRDDRQKMTRDSLDTLIARKEHFTIHLHKPIQLQVDYITVT 504 Query: 397 SPKDSIIQFRDDIYGLDNVHVGII 420 + + F D+Y D ++ ++ Sbjct: 505 TNGKGRLLFYPDVYDRDEKYLKMM 528 >gi|319957191|ref|YP_004168454.1| erfk/ybis/ycfs/ynhg family protein [Nitratifractor salsuginis DSM 16511] gi|319419595|gb|ADV46705.1| ErfK/YbiS/YcfS/YnhG family protein [Nitratifractor salsuginis DSM 16511] Length = 423 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 116/234 (49%), Gaps = 15/234 (6%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y LVNIP + ENG++ S V+VG+ QTPI + + ++ NP W +P +I + + Sbjct: 185 YFLVNIPEFRVRFFENGRLAFVSDVVVGKKSWQTPIFSAAMKYVVLNPTWNVPDNIARAE 244 Query: 255 MMALLRQDPQYLKDNNIHMI---DEKGKEVFVEEVDWNSPEPPNFIFR-------QDPGK 304 + L +DP Y K + ++ D V V W P + + Q P K Sbjct: 245 EIPHLLRDPNYFKHKRMIVLRSYDLDTTPVNPRSVPWRKYLRPEWKKKDLPYKLIQLPAK 304 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD---TP 361 NA+ K F + N+ YMHDTP LF +R + GC+R+ I++ +L + + Sbjct: 305 GNALGRVKFLFPNGNSVYMHDTPAKSLFKRKIRAYSHGCIRLARPIEMLRYLAQHGYLSK 364 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 W++ +EE +K+ K V L +PVH Y +A+ + +QF DIYG D + Sbjct: 365 DWTQ--VEEELKSWKRHNVSLKEPIPVHVGYFTAYVSQGGGVQFFPDIYGYDQI 416 >gi|90578006|ref|ZP_01233817.1| hypothetical amidase [Vibrio angustum S14] gi|90441092|gb|EAS66272.1| hypothetical amidase [Vibrio angustum S14] Length = 569 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/283 (26%), Positives = 132/283 (46%), Gaps = 7/283 (2%) Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + A+K F+ +GL G++ + + P +R +NL R ++ + + ++ Sbjct: 257 LNQAIKAFEENYGLKADGIIGPDVVSQLTRPYSSLVRLAALNLQR-ERFAQLEGDGPQII 315 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VNIP + +N + S +I G R T + S IN ++ NPYW +P +I ++ + Sbjct: 316 VNIPDYKMTLYDNQEPVFESKIIDGMPKRPTNLFQSYINTVVINPYWYVPETIKVQNTIP 375 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFV--EEVDWNSPEPPNFI--FRQDPGKINAMASTKI 313 + +P +L +N + +I+ V +DW + P F FRQDPG NA+ Sbjct: 376 SAKANPNFLANNRMDVINSWSDRSVVPPSSIDWATVNPKTFAHEFRQDPGPENALGRVAF 435 Query: 314 EFYSRNNTYMHD--TPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 + YMHD E LF R +SGC+RV+ + ++L + ++++ Sbjct: 436 LMPDSFSVYMHDESQSEYPLFKRRHRDLSSGCMRVQQPRKMATFILSYQNMPNLPSVDDM 495 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + T + L T V + Y++AW + + R DIYG DN Sbjct: 496 INTNNHREIGLNTHVNLDVAYLTAWVTPNGQLAMRPDIYGYDN 538 >gi|323497656|ref|ZP_08102673.1| hypothetical protein VISI1226_22555 [Vibrio sinaloensis DSM 21326] gi|323317405|gb|EGA70399.1| hypothetical protein VISI1226_22555 [Vibrio sinaloensis DSM 21326] Length = 469 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 67/219 (30%), Positives = 123/219 (56%), Gaps = 6/219 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D + A+K FQ HGL+P G++ TL+ +N+ + R+ L +N R++ + + Sbjct: 222 YDKSLVPAIKQFQQLHGLNPDGIIGPQTLKWLNLSLSSRLSTLALNAERVRYWPSEHDSI 281 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+P+ + +GK S V+VGR R TP++ + ++ ++ NP W +P +I+ + Sbjct: 282 --IVVNVPSYEMTYWHDGKAVFESKVVVGRKARPTPLMVTNLDTLILNPTWNVPWTIMVE 339 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPNFIFR--QDPGKINAMA 309 D++ +++DP+Y+ +I ++ + G + ++ E+DW S P F +R Q G NA+ Sbjct: 340 DIIPKIQKDPEYITKQHIEILPKWGSKERIDPLEIDWESLNPKAFPYRMTQMSGSRNALG 399 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 K + Y+HDTP LF+ R +SGC+RV N Sbjct: 400 LYKFNTPNNRAIYLHDTPSKGLFSQPKRAFSSGCIRVEN 438 >gi|190149392|ref|YP_001967917.1| hypothetical protein APP7_0123 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914523|gb|ACE60775.1| Uncharacterized protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 213 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 107/199 (53%), Gaps = 7/199 (3%) Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 +IVGR DR+TP+++S+++ ++ NP W IP +I+ KD++ L ++P + + D KG Sbjct: 1 MIVGRDDRRTPVMYSKLSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKG 60 Query: 279 KEVFVEEVDW----NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 ++ V+W NS P + RQ G +A+ K S + Y+HDTP LF Sbjct: 61 NKINPRSVNWAQYVNSKNLP-YRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGK 119 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 R +SGCVRV DL LLK+ WS ++V+ ++KTT + ++ PV+ Y++ Sbjct: 120 TDRALSSGCVRVERSDDLASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVT 178 Query: 395 AWSPKDSIIQFRDDIYGLD 413 AW + DIY D Sbjct: 179 AWVENGKVYTL-PDIYKFD 196 >gi|89076172|ref|ZP_01162529.1| hypothetical amidase [Photobacterium sp. SKA34] gi|89048122|gb|EAR53707.1| hypothetical amidase [Photobacterium sp. SKA34] Length = 569 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 79/291 (27%), Positives = 136/291 (46%), Gaps = 11/291 (3%) Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + A++ F+ +GL G++ + + P R +NL R ++ + + ++ Sbjct: 257 INQAIQAFEGNYGLKMDGIIGPDVMRQLTRPYSSLARIAALNLQR-ERFAQLEGDGPQII 315 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VNIP + +N K S +I G R T + S IN ++ NPYW +P +I ++ + Sbjct: 316 VNIPDYKMTLYDNQKPIFESKIIDGIPKRPTNLFQSYINTVVINPYWYVPETIKVQNTIP 375 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFV--EEVDWNSPEPPNFI--FRQDPGKINAMASTKI 313 + +P +L +N + +I+ V +DW + P F FRQDPG NA+ Sbjct: 376 SAKANPNFLANNRMDVINSWSDRSVVPPSSIDWATVNPKTFSHEFRQDPGPENALGRVAF 435 Query: 314 EFYSRNNTYMHD--TPEPILFNNVVRFETSGCVRVRNIIDLDVWLL--KDTPTWSRYHIE 369 + YMHD E LF R +SGC+RV+ + +L ++ PT + Sbjct: 436 LMPDSFSVYMHDESQSEYPLFKRRHRDLSSGCMRVQQPRKMATLILSYQNMPTLP--SVN 493 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 +++ T K + L T V + Y++AW ++ + R DIYG DN +I Sbjct: 494 DMINTNKHREIGLNTHVNLDVAYLTAWVTQNGQLAMRPDIYGYDNPGAKLI 544 >gi|145641085|ref|ZP_01796666.1| hypothetical protein CGSHiR3021_08446 [Haemophilus influenzae R3021] gi|145274246|gb|EDK14111.1| hypothetical protein CGSHiR3021_08446 [Haemophilus influenzae 22.4-21] Length = 288 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 120/221 (54%), Gaps = 6/221 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++S Sbjct: 64 QKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMYS 120 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS-PE 292 +++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 121 KLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIGN 180 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ L Sbjct: 181 KFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRIEKSDQL 239 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 LLK+ W+ V+ ++KTT + ++ PV ++ + Sbjct: 240 ASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFYIML 279 >gi|256423860|ref|YP_003124513.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] gi|256038768|gb|ACU62312.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] Length = 478 Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 93/375 (24%), Positives = 171/375 (45%), Gaps = 26/375 (6%) Query: 44 YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH 103 Y ++ N+ F+ L +V+ S + IAFY D L R + P+ Sbjct: 118 YSALANNNFNKLLEKVEP---------SAPQYNALKSMIAFYNDRLQRQDY-----HPVK 163 Query: 104 LGNSSV--SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + + + S L ++L G LD A + + ++ + G + Sbjct: 164 ITSETADSSNHPLIDKLYQLGFLDAPD--YTAHEDTLRIKIRAAEYMFEFLEDGALRQGV 221 Query: 162 LEAMNVPVDLRIRQLQ--VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 +E +NV ++ R+ +L+ +N R L + + V+V+IPAA L L S V Sbjct: 222 IEELNVSLEKRLSELKHAINTFRWLNCLRKYQYV--VVVDIPAAELFVYLGDSTMLNSRV 279 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ-YLKDNNIHMIDEKG 278 IVG+ + L SRI+ ++ PYW +P +I K+++ ++ P YL+ N ++D+ G Sbjct: 280 IVGKAKTPSSPLASRIDEVILFPYWTVPHNIAVKELLPGIKGAPSIYLEAGNYQVLDKSG 339 Query: 279 KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + + + ++WN+ NF + RQ G N++ K+ F++ +TY+HDTP F Sbjct: 340 RILDPQSINWNTLNKHNFPYTLRQMFGCDNSLGIIKLNFFNPYSTYLHDTPARSYFMFNS 399 Query: 337 RFETSGCVRVRNIIDLDVWLL-KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 R+ + GC+RV + I L L+ + P + + + +PV +Y A Sbjct: 400 RYFSHGCIRVEDAIPLAKLLVPAEAPRIDSLSRMKTPPAGSPITIPMKPGIPVIILYEVA 459 Query: 396 WSPKDSIIQFRDDIY 410 W + ++F +D+Y Sbjct: 460 WPDANGKVRFFEDVY 474 >gi|228472762|ref|ZP_04057520.1| peptidoglycan-binding domain 1 protein [Capnocytophaga gingivalis ATCC 33624] gi|228275813|gb|EEK14579.1| peptidoglycan-binding domain 1 protein [Capnocytophaga gingivalis ATCC 33624] Length = 559 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 83/328 (25%), Positives = 151/328 (46%), Gaps = 9/328 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ +G + ++ LR L G P + D+ + AVK FQ G+ G+ Sbjct: 229 LKSYTIGYADSTILALRACLKHKGYESPVQENPEQVDSLLVEAVKDFQRSIGIPADGVPG 288 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 + T+ + + + L +N+ R++ + +G Y+LVNIP L + ++ Sbjct: 289 AQTMGYLLMTAKEKRDLLLLNMERLR-WHNKDLGEDYILVNIPEYRLRLFHKDSLVFQTR 347 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL---RQDPQYLKDNNIHMID 275 V+VG + TPI + + F P W +P+SI++K+M+ + R +Y K + + Sbjct: 348 VVVGNPETPTPIFSDSLRYVEFRPTWSVPQSIVRKEMIPNIISSRDSLKYAKRG--YKLY 405 Query: 276 EKGKEVFVEEVDWNSPEPPN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 E KE+ +V+W+ F F + P + N++ K Y+ + Y+HDTP LF Sbjct: 406 ENNKEIDPAKVNWHDERISKRAFYFVEAPSENNSLGLVKFVLYNDMSIYLHDTPSKRLFG 465 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT-RKTTPVKLATEVPVHFVY 392 N R + GC+RV L LL+ + W ++E + T R V+ + Y Sbjct: 466 NTQRTYSHGCIRVEYPERLATKLLRGSEEWDAEKVKEAMTTGRDQRRVRPKQHFVIDVSY 525 Query: 393 ISAWSPKDSIIQFRDDIYGLDNVHVGII 420 ++AW ++ + R+D Y D + I+ Sbjct: 526 LTAWVDEEGKLIIRNDPYQFDKEQLKIL 553 >gi|300023955|ref|YP_003756566.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525776|gb|ADJ24245.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 743 Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 94/345 (27%), Positives = 152/345 (44%), Gaps = 42/345 (12%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG V LR+RL + + + L +D + AVK +Q +GL P G+V + Sbjct: 332 LRLGTRDDQVALLRQRLKVPSESPDANDL---YDDALLDAVKDYQRANGLTPDGLVGNGV 388 Query: 162 LEAMN-------VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 A+N + + +L VN+ R + L E +G YV+ NIP + E + Sbjct: 389 RNALNGGGKSKRIDPARNVDRLIVNMERWRWLPEN-LGSFYVMNNIPEYTSEIWRGKERV 447 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 L +IVG+ TP+L + + ++F P W +P I K++ L+Q + Sbjct: 448 LNQRMIVGQPSWPTPVLTASMQYVIFRPSWGMPDGIKAKELAPRLKQ----ASNTGYDFF 503 Query: 275 DE-------------------------KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 D+ G+ V V+WN+ + + F Q PG N + Sbjct: 504 DQLFGGGGGGNSGGARVLQAYKLQVSFNGRPVDPNSVNWNTADIRRYSFVQPPGPDNPLG 563 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F ++++ YMHDTPE LF R + GC+RV + +L++ +S + Sbjct: 564 MVKFRFPNKHDVYMHDTPERGLFGQANRALSHGCLRVGDPRRTAEVILQEDKGYSAEKVG 623 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 E+ V L+ VPV+ VY +A +D ++ DIYG DN Sbjct: 624 ELWNGGAD--VTLSKPVPVYLVYFTARVDEDGKLRTYGDIYGNDN 666 >gi|262361436|gb|ACY58157.1| hypothetical protein YPD4_1249 [Yersinia pestis D106004] Length = 205 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 6/188 (3%) Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV---EEVD 287 + S +N ++ NP W +P S++++D++ R D Y + N ++ + V +D Sbjct: 1 MSSALNNVVVNPPWNVPTSLVRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMID 60 Query: 288 WNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 W+ P NF +R Q PG N++ K S + Y+HDTP LF +R +SGCVR Sbjct: 61 WSIISPNNFPYRLRQAPGANNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVR 120 Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 V DL LL+D W+ + VK TT V + VPV Y++AW +D QF Sbjct: 121 VNKASDLANMLLQDA-GWNDARVSSKVKQGDTTYVNIRQRVPVQLYYLTAWVAEDGKPQF 179 Query: 406 RDDIYGLD 413 R DIY D Sbjct: 180 RTDIYNYD 187 >gi|145637696|ref|ZP_01793349.1| hypothetical protein CGSHiHH_01956 [Haemophilus influenzae PittHH] gi|145269098|gb|EDK09048.1| hypothetical protein CGSHiHH_01956 [Haemophilus influenzae PittHH] Length = 461 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 66/221 (29%), Positives = 119/221 (53%), Gaps = 6/221 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++S Sbjct: 237 QKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMYS 293 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS-PE 292 +++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 294 KLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIGN 353 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ L Sbjct: 354 KFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRIEKSEQL 412 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 LLK+ W+ V+ ++K T + ++ PV ++ + Sbjct: 413 ASILLKEA-GWTETRKNTVLASKKNTSAPIRSDNPVFYIML 452 >gi|220920262|ref|YP_002495563.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219944868|gb|ACL55260.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 670 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/274 (27%), Positives = 127/274 (46%), Gaps = 19/274 (6%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 AV+ FQ GL +G+++ T+ A+ P R + M + L +G +V VN Sbjct: 303 GAVERFQRERGLAATGILNPETVAALAGPSPGRQEADLLANMERWRWLPADLGKTHVWVN 362 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IP + V +V + VIVG+ D TP+ + + NP W +P SI++ + + L Sbjct: 363 IPEYKVRVVSGTRVVDEARVIVGKPDSPTPVFSGEMTYAVVNPSWNVPPSILKNEFLPRL 422 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 +DP Y ++ +G + + RQ PG+ NA+ K F + + Sbjct: 423 ARDPTYAARLGYEVV-RRGNGIAI---------------RQPPGERNALGFIKFMFPNDH 466 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 Y+HDTP LF R + GCVRV + +L PTW ++ ++ + T Sbjct: 467 AVYLHDTPNRALFARSARALSHGCVRVDDPFRFAEVVL--GPTWPTERLKRLIGKGERT- 523 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 V L ++PVH Y + + + ++ DD+YG++ Sbjct: 524 VMLPEKLPVHLAYFTLVADEAGTLRQFDDLYGIN 557 >gi|330448515|ref|ZP_08312163.1| hypothetical protein PMSV_2819 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492706|dbj|GAA06660.1| hypothetical protein PMSV_2819 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 569 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/283 (25%), Positives = 132/283 (46%), Gaps = 7/283 (2%) Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + A+K F+ +GL G++ + + P R +NL R ++ + + ++ Sbjct: 257 MNQAIKAFETNYGLKADGIMGPEVVAQLTCPYSSLARIAALNLQR-ERFAQLEGDGPQII 315 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VNIP ++ +N K S +I G R T + + IN ++ NPYW +P +I ++ + Sbjct: 316 VNIPDYTMTLYDNQKPVFESDIIDGMPKRPTNLFQTYINTVVINPYWYVPETIKVQNTIP 375 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFV--EEVDWNSPEPPNFI--FRQDPGKINAMASTKI 313 + +P +L+ N + +I+ V ++W + P F FRQDPG NA+ Sbjct: 376 SAKANPNFLQRNRMDVINSWSDRSVVPPSSINWATVNPKTFPHEFRQDPGPENALGRVAF 435 Query: 314 EFYSRNNTYMHD--TPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 + YMHD E LF R +SGC+RV+ ++ +L + ++++ Sbjct: 436 LMPDSFSVYMHDEEQSEYPLFKRRHRDLSSGCMRVQKPREMAKLILSYQNMPNLPSVDDM 495 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + K + L V + Y+++W D + R DIYG DN Sbjct: 496 INSNKHREIGLKKHVDLDVAYLTSWVTPDGQLAMRPDIYGYDN 538 >gi|294012199|ref|YP_003545659.1| hypothetical protein SJA_C1-22130 [Sphingobium japonicum UT26S] gi|292675529|dbj|BAI97047.1| conserved hypothetical protein [Sphingobium japonicum UT26S] Length = 503 Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 90/337 (26%), Positives = 145/337 (43%), Gaps = 39/337 (11%) Query: 92 GGWPELPI------RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 GG P++P+ RP LR RL ++ A+D + + VK F Sbjct: 193 GGLPQVPVPADVKLRP----GMKAGAAALRRRLGLAS--------GTAYDKALVARVKAF 240 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 Q HGL P G+ ++T+ A+N D R + +N+ R + L + +R+V+V+ +A L Sbjct: 241 QGDHGLKPDGVAGAATIAALNRGDDHYDRLIALNMERARLLPGPQ--VRHVVVDAASARL 298 Query: 206 EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 G V+VG + QTP++ + NPYW +P ++++ + + Sbjct: 299 WYFSKGAQDGTMKVVVGAKESQTPMMAGMVRYATLNPYWNVPSDLVERKLAPRMLNGASL 358 Query: 266 LKDNNIHMID--EKGKEVFVEEVDWNS--PEPPNFIFRQDPGKINAMASTKIEFYSRNNT 321 K + D +++ VDW + RQ PG NAM K F + Sbjct: 359 TKLRYEALSDWSANARKLDPAAVDWRAVADGRTELRVRQLPGGDNAMGKVKFMFPNDLGI 418 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP-- 379 Y+HDTP L R ++GCVR L+D R+ + +K P Sbjct: 419 YLHDTPSRDLLAKPARQFSNGCVR-----------LEDAQRLGRWFFGKPLKPASDKPEQ 467 Query: 380 -VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 V L VPV+ Y++A P + ++F D+YG D V Sbjct: 468 HVPLPQPVPVYLTYLTA-VPLEDGVRFLPDVYGRDGV 503 >gi|312115661|ref|YP_004013257.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodomicrobium vannielii ATCC 17100] gi|311220790|gb|ADP72158.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodomicrobium vannielii ATCC 17100] Length = 569 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 121/250 (48%), Gaps = 9/250 (3%) Query: 171 LRIRQLQVNLMRIKKLLEQ------KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 LR ++ R+ +EQ +G YV NIP + V+NG+V + ++ G++ Sbjct: 250 LRDKKQSAEAKRLLANMEQWRWMPADLGDLYVWNNIPEYTQRVVKNGEVVRKERIVTGQL 309 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 D+QTP+ + +I F P W++P SI ++++ L++ +++ + + D+ G+ V Sbjct: 310 DKQTPVFTRTLKKITFKPTWIVPESIKVREILPSLQRGGGMMREWQLELRDKDGQTVDWR 369 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT--PEPILFNNVVRFETSG 342 ++W + F Q G + M K F S++ +MHD P+ +FN R + G Sbjct: 370 RINWYRTDIRIFNVVQPNGAKSVMGKVKFSFPSQHTVFMHDAYPPDKWMFNKARRTYSHG 429 Query: 343 CVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT-TPVKLATEVPVHFVYISAWSPKDS 401 C+RV+N I L LLK+ + + + V+T + +P+H Y +A D Sbjct: 430 CMRVQNPIGLAEILLKEDKGFEAAQVRDAVRTGGNDNEFDIERRIPIHMTYFTALVGDDG 489 Query: 402 IIQFRDDIYG 411 + D+YG Sbjct: 490 KLHTFPDVYG 499 >gi|326798188|ref|YP_004316007.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobacterium sp. 21] gi|326548952|gb|ADZ77337.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobacterium sp. 21] Length = 487 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 3/223 (1%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVD-RQTPILHSRINRIMFNPYWVIPRSIIQKD 254 + VNIPA L + + + V+VG+ D +TP+L S+I+ + NP W IP SI +K+ Sbjct: 259 IYVNIPAYQLYIIRDRSTKGQMKVVVGKADGHETPMLASKIHSVQVNPIWNIPTSIAKKE 318 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQDPGKINAMASTK 312 ++ + D YL ++ + + K + +DW+ N + F+Q PG N++ K Sbjct: 319 ILVQAKADKYYLANHGMDVYRRGVKIANPDTIDWSVYNEENLPYSFKQQPGNTNSLGLIK 378 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F + ++ Y+HDTP +F+ +R + GCVRV +DL L + + E Sbjct: 379 FLFKNGSSVYLHDTPAKAVFSRSMRAASHGCVRVEKPLDLARALFGEGEKYDLIKEEMSS 438 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + + L +VPV Y++ S ++F D+Y LD++ Sbjct: 439 EEPVAKTIGLKPQVPVVLDYVTCKMDSSSTLKFYPDVYKLDSL 481 >gi|326388316|ref|ZP_08209912.1| hypothetical protein Y88_3197 [Novosphingobium nitrogenifigens DSM 19370] gi|326207048|gb|EGD57869.1| hypothetical protein Y88_3197 [Novosphingobium nitrogenifigens DSM 19370] Length = 386 Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 69/245 (28%), Positives = 112/245 (45%), Gaps = 25/245 (10%) Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 R L N+ R + L Q +G YVLVN A + +G+ V+VG+ TP Sbjct: 153 RRATLATNMDRWR-WLPQSLGADYVLVNAAAFEVRLWRHGQQVGTWPVVVGKTKSPTPTF 211 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN-IHMIDEKGKEVFVEEVDWNS 290 ++++ + FNP+W IP +I+++ + ++R+ P + IH Sbjct: 212 SAQVSGVTFNPWWDIPPAIVRESIGGMMRRHPALARQRGYIHT----------------- 254 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 +RQ PG NA+ K+ + N Y+HDTPE LF R + GC+RV + I Sbjct: 255 ----GASYRQKPGPANALGQMKLVMPNPFNVYLHDTPEKKLFARDTRAFSHGCIRVSDAI 310 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 L++D S ++ ++ T +TT V L +PV+ Y +A + D + DIY Sbjct: 311 GFATTLVQDVK--SADEVKAIIATGRTTTVDLPMHLPVYVTYFTATTRSDGTLAILPDIY 368 Query: 411 GLDNV 415 D Sbjct: 369 KRDGT 373 >gi|255036894|ref|YP_003087515.1| ErfK/YbiS/YcfS/YnhG family protein [Dyadobacter fermentans DSM 18053] gi|254949650|gb|ACT94350.1| ErfK/YbiS/YcfS/YnhG family protein [Dyadobacter fermentans DSM 18053] Length = 398 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 114/218 (52%), Gaps = 4/218 (1%) Query: 194 RYVLVNIPAASLEAVEN-GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 R+VLVNI A L A+++ G+ L +VG+ D TP + + I+ +PYW +P+SI Sbjct: 172 RFVLVNIRGAYLTAMDSAGQNVLTMRTVVGKRDTPTPTIDTYATSIVTHPYWNVPKSIAI 231 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN--SPEPPNFIFRQDPGKINAMAS 310 K++ DP+YL N I +I + G+ + +E+DW + E + FRQ+ G+ N++ Sbjct: 232 KEIFPKAAADPEYLSRNRIQVIGKDGQAIDPQELDWGDLTAEKFPYRFRQETGEDNSLGL 291 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K+E + Y+HDT LF + R+ + GCVRV+ DL ++ S + E Sbjct: 292 LKVEIKNPLAIYLHDTNARYLFKSGQRWRSHGCVRVQYPTDLANYMAGSKLLDSDFMTEP 351 Query: 371 VVKTRKTTPVKLATEVPVHFVYISA-WSPKDSIIQFRD 407 + KL +PV +Y+ A +PK ++ F D Sbjct: 352 DSVSHPPKWHKLQVRIPVFLLYLPADCNPKGDLMYFPD 389 >gi|300778249|ref|ZP_07088107.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300503759|gb|EFK34899.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 468 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 125/252 (49%), Gaps = 13/252 (5%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLR---YVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 + I+++ +N+ R++ MG+ Y+LVNIPA SL+ V+ K L VIVG+ Sbjct: 215 EAEIKKVAINMERLRW-----MGISSDAYLLVNIPAYSLDFVQKDKT-LHYKVIVGKPST 268 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 +P+L SR++ P W +P++I K+M+ + ++ QYL++++ + D GK V V Sbjct: 269 PSPVLKSRVDYFTTAPDWKVPQNIFIKEMLPKIIKNSQYLEEHHYSLYDRSGKIVPVTSA 328 Query: 287 DWNSP--EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 +P + RQ G NA+ + F + Y+HDT + LF R + GC+ Sbjct: 329 KLKQAYRKPYQYSIRQSSGCDNALGAVVFRFSNSYGVYLHDTSQKQLFEKTQRALSHGCI 388 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR-KTTPVKLATEVPVHFVYISAWSPKDSII 403 RV N DL LLK T + + R + L VP+ Y++ K+ + Sbjct: 389 RVENAGDLAAQLLKHDGTEDEIPLMKSFMDRYERKDFVLKQPVPIMITYLTCLV-KNGKM 447 Query: 404 QFRDDIYGLDNV 415 F +DIY LD V Sbjct: 448 VFYNDIYNLDPV 459 >gi|42524313|ref|NP_969693.1| putative amidase [Bdellovibrio bacteriovorus HD100] gi|39576522|emb|CAE80686.1| putative amidase [Bdellovibrio bacteriovorus HD100] Length = 510 Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 91/344 (26%), Positives = 159/344 (46%), Gaps = 28/344 (8%) Query: 92 GGWPEL-PIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 G W ++ P+ PL L + ++ ++ RL + G + + FD + AV Q Sbjct: 158 GTWQDIVPVTTPLRLYSIHPVIREIKSRLALLGYT--MRNMDDRFDGDLLKAVTDIQWNM 215 Query: 150 GLDPSGMVD--SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 + P G + ++V R+RQ+QV++ +++ Q +Y+ VN+ + Sbjct: 216 RIRPDGEISPKGKVWSFLSVSCMDRVRQIQVDMEKMR-WFPQYFEKKYIFVNLAMSYFIM 274 Query: 208 VENGKVGLRST---VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR---- 260 ++ R I GR R++P + I ++ NP+WV+P +I +D + L+ Sbjct: 275 MDQSTDWPRVMSFRTINGRPARKSPTMRDEIVNVIINPFWVVPPTIFYEDKVNDLKDLTS 334 Query: 261 -QDPQYLKDNNIHM-IDEKGKEVFVEEVDWNSPEP----PNFIFRQDPGKINAMASTKIE 314 Q +Y ++ + ++V +DW P+ I RQ P NA+ K + Sbjct: 335 EQIREYFDSHHYEAWVGGFRRKVDPTTIDWKGIAAGTVDPDIIIRQLPHLGNALGVLKFD 394 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE----- 369 + Y+HDT + LF+ +R +SGCVR+ +DL +LL+DTP W R I Sbjct: 395 LTNSFAIYLHDTNQRELFDTPMRQLSSGCVRLEKPLDLAEYLLEDTP-WDRQTIASMMAR 453 Query: 370 --EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 EVV PV +PV+ Y+++ D +++F DDIYG Sbjct: 454 PGEVVAKPTEIPVPSYKRMPVYTAYLTSMMNSDEVVRFVDDIYG 497 >gi|296445064|ref|ZP_06887025.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] gi|296257485|gb|EFH04551.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] Length = 518 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 19/242 (7%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 D R+R + M + + + +G + VNIP L + +G+V R+ VIVG+ TP Sbjct: 283 DTRLRAEIIANMERWRWMPRDLGENRIEVNIPDFELAVIRDGEVTHRARVIVGKEGTPTP 342 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 + + + I+ NPYW +P SI+ K+M+ P++ D + I +G EV Sbjct: 343 VFSNAMQFIIVNPYWNVPPSILNKEML------PKFGGD--LQAIAARGYEVVYRNG--- 391 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 + RQ PG+ NA+ K F + + Y+HDTP LF + R + GCVRV Sbjct: 392 -----HARVRQRPGEGNALGRIKFMFPNDFSVYLHDTPSRALFASTHRAFSHGCVRVDQP 446 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 +L W ++ ++ ++ + LA +P+H Y +A+ + +Q R D+ Sbjct: 447 FRFAEAVLGS--GWREERVKRLIGDQERY-INLARPLPIHIEYFTAYVDESGRLQLRGDL 503 Query: 410 YG 411 YG Sbjct: 504 YG 505 >gi|145629244|ref|ZP_01785043.1| hypothetical protein CGSHi22121_10590 [Haemophilus influenzae 22.1-21] gi|144978747|gb|EDJ88470.1| hypothetical protein CGSHi22121_10590 [Haemophilus influenzae 22.1-21] Length = 459 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 110/204 (53%), Gaps = 6/204 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++S Sbjct: 235 QKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMYS 291 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS-PE 292 +++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 292 KLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIGN 351 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV L Sbjct: 352 KFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQL 410 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRK 376 LLK+ W+ V+ ++K Sbjct: 411 ASILLKEA-GWTETRKNTVLASKK 433 >gi|295086942|emb|CBK68465.1| Uncharacterized protein conserved in bacteria [Bacteroides xylanisolvens XB1A] Length = 513 Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/258 (27%), Positives = 122/258 (47%), Gaps = 19/258 (7%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHS 233 +L VN+ R + G +YV+ N+ A L+A+ E L + VG V +TP+L S Sbjct: 242 RLLVNMERARWQYALDKGQKYVIANVAAFMLQAINEETDSILEMRICVGSVKNKTPLLSS 301 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 RI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V +V+W Sbjct: 302 RIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVNPHQVNWAKYAG 361 Query: 294 PN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + +QD N++ F + ++ Y+HDTP F R + GCVR++ +D Sbjct: 362 KGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKALD 421 Query: 352 LDVWLLKDTPTWSR------YHIEEVVKTRKTTPVKLATE----------VPVHFVYISA 395 +LLK+ I+ V + K PV A +P+ Y + Sbjct: 422 FAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPVSAAYRELKHYSLEKYIPLFIDYQTV 481 Query: 396 WSPKDSIIQFRDDIYGLD 413 + D+ +++ +DIY D Sbjct: 482 YLSADNNLRYCEDIYKYD 499 >gi|298481479|ref|ZP_06999671.1| periplasmic protein [Bacteroides sp. D22] gi|298272343|gb|EFI13912.1| periplasmic protein [Bacteroides sp. D22] Length = 513 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/258 (27%), Positives = 122/258 (47%), Gaps = 19/258 (7%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHS 233 +L VN+ R + G +YV+ N+ A L+A+ E L + VG V +TP+L S Sbjct: 242 RLLVNMERARWQYALDKGQKYVIANVAAFMLQAINEETDSILEMRICVGSVKNKTPLLSS 301 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 RI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V +V+W Sbjct: 302 RIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVNPHQVNWAKYAG 361 Query: 294 PN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + +QD N++ F + ++ Y+HDTP F R + GCVR++ +D Sbjct: 362 KGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKALD 421 Query: 352 LDVWLLKDTPTWSR------YHIEEVVKTRKTTPVKLATE----------VPVHFVYISA 395 +LLK+ I+ V + K PV A +P+ Y + Sbjct: 422 FAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPVSAAYRELKHYSLEKYIPLFIDYQTV 481 Query: 396 WSPKDSIIQFRDDIYGLD 413 + D+ +++ +DIY D Sbjct: 482 YLSADNNLRYCEDIYKYD 499 >gi|312886219|ref|ZP_07745834.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] gi|311301326|gb|EFQ78380.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] Length = 542 Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 85/310 (27%), Positives = 139/310 (44%), Gaps = 51/310 (16%) Query: 156 MVDSSTLEAMNVPVD---LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 +V L AM+ + L++R +++N+ R++ K RY+ VNIPA L+ +EN K Sbjct: 223 LVLKKELAAMSTVTNADSLQLRTIKLNMERLRWQTPAKDS-RYLWVNIPAFKLQWIENKK 281 Query: 213 VGLRSTVIVGR-----------------------VDRQTPILHSRINRIMFNPYWVIPRS 249 V V +G V+ +T IL SRIN I NP W IP S Sbjct: 282 VVFDMKVCLGEPKPAGYDTMLLRYLKTHSIDDKPVNHETTILCSRINTIQLNPNWNIPSS 341 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQDPGKINA 307 I Q ++ + ++P YL +NNI + + + + W + + F+QD ++NA Sbjct: 342 IAQNEIYYAILRNPAYLSNNNIRVYYKDKLVTQPDTIRWGRIQRQKIPYKFKQDASELNA 401 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR-------------NIID--- 351 + K F + Y+HDTP F + R + GCVRV N++D Sbjct: 402 LGKFKFIFDNEAGIYLHDTPNKKAFGSSWRAVSHGCVRVEDPLKLSEALVNDTNMVDNIR 461 Query: 352 LDVWL----LKDTPTWSRYHIEEVVK--TRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 ++V L LKDT ++ + VK K+ + L ++ + Y + W ++ + F Sbjct: 462 MEVGLKPVNLKDTTKYNAIQAKRAVKGFELKSKYIGLKPDMQLFIDYYTCWPDENGKLVF 521 Query: 406 RDDIYGLDNV 415 D Y +D V Sbjct: 522 YADAYRMDTV 531 >gi|294646674|ref|ZP_06724299.1| conserved domain protein [Bacteroides ovatus SD CC 2a] gi|294807105|ref|ZP_06765923.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b] gi|292637962|gb|EFF56355.1| conserved domain protein [Bacteroides ovatus SD CC 2a] gi|294445671|gb|EFG14320.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 521 Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 80/311 (25%), Positives = 137/311 (44%), Gaps = 30/311 (9%) Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM--------NVPVDLRIRQLQVNLMR 182 + A D+ + + F HG PS + E + D +L VN+ R Sbjct: 201 NAALDSLRANPIAAF---HGAQPSSPLYRKMQEELVRVNAWGKTDTTDYYRNRLLVNMER 257 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 + G +YV+ N+ A L+A+ E L + VG V +TP+L SRI + N Sbjct: 258 ARWQYALDKGQKYVIANVAAFMLQAINEETDSILEMRICVGSVKNKTPLLSSRIYYMELN 317 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFR 299 PYW +P+SII+K+++ R+D Y N + + D+ G +V +V+W + + Sbjct: 318 PYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVNPHQVNWAKYAGKGVPYTVK 377 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 QD N++ F + ++ Y+HDTP F R + GCVR++ +D +LLK+ Sbjct: 378 QDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKALDFAFFLLKE 437 Query: 360 TPTWSR------YHIEEVVKTRKTTPVKLATE----------VPVHFVYISAWSPKDSII 403 I+ V + K PV A +P+ Y + + D+ + Sbjct: 438 PDELLEDRIRIAMDIKPVSEEGKKLPVSAAYRELKHYSLEKYIPLFIDYQTVYLSADNNL 497 Query: 404 QFRDDIYGLDN 414 ++ +D Y D+ Sbjct: 498 RYCEDTYKYDS 508 >gi|262408643|ref|ZP_06085189.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|262353508|gb|EEZ02602.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 513 Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 80/311 (25%), Positives = 137/311 (44%), Gaps = 30/311 (9%) Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM--------NVPVDLRIRQLQVNLMR 182 + A D+ + + F HG PS + E + D +L VN+ R Sbjct: 193 NAALDSLRANPIAAF---HGAQPSSPLYRKMQEELVRVNAWGKTDTTDYYRNRLLVNMER 249 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 + G +YV+ N+ A L+A+ E L + VG V +TP+L SRI + N Sbjct: 250 ARWQYALDKGQKYVIANVAAFMLQAINEETDSILEMRICVGSVKNKTPLLSSRIYYMELN 309 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFR 299 PYW +P+SII+K+++ R+D Y N + + D+ G +V +V+W + + Sbjct: 310 PYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVNPHQVNWAKYAGKGVPYTVK 369 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 QD N++ F + ++ Y+HDTP F R + GCVR++ +D +LLK+ Sbjct: 370 QDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKALDFAFFLLKE 429 Query: 360 TPTWSR------YHIEEVVKTRKTTPVKLATE----------VPVHFVYISAWSPKDSII 403 I+ V + K PV A +P+ Y + + D+ + Sbjct: 430 PDELLEDRIRIAMDIKPVSEEGKKLPVSAAYRELKHYSLEKYIPLFIDYQTVYLSADNNL 489 Query: 404 QFRDDIYGLDN 414 ++ +D Y D+ Sbjct: 490 RYCEDTYKYDS 500 >gi|237715634|ref|ZP_04546115.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229444343|gb|EEO50134.1| conserved hypothetical protein [Bacteroides sp. D1] Length = 518 Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 80/311 (25%), Positives = 137/311 (44%), Gaps = 30/311 (9%) Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM--------NVPVDLRIRQLQVNLMR 182 + A D+ + + F HG PS + E + D +L VN+ R Sbjct: 198 NAALDSLRANPIAAF---HGAQPSSPLYRKMQEELVRVNAWGKTDTTDYYRNRLLVNMER 254 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 + G +YV+ N+ A L+A+ E L + VG V +TP+L SRI + N Sbjct: 255 ARWQYALDKGQKYVIANVAAFMLQAINEETDSILEMRICVGSVKNKTPLLSSRIYYMELN 314 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFR 299 PYW +P+SII+K+++ R+D Y N + + D+ G +V +V+W + + Sbjct: 315 PYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVNPHQVNWAKYAGKGVPYTVK 374 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 QD N++ F + ++ Y+HDTP F R + GCVR++ +D +LLK+ Sbjct: 375 QDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKALDFAFFLLKE 434 Query: 360 TPTWSR------YHIEEVVKTRKTTPVKLATE----------VPVHFVYISAWSPKDSII 403 I+ V + K PV A +P+ Y + + D+ + Sbjct: 435 PDELLEDRIRIAMDIKPVSEEGKKLPVSAAYRELKHYSLEKYIPLFIDYQTVYLSADNNL 494 Query: 404 QFRDDIYGLDN 414 ++ +D Y D+ Sbjct: 495 RYCEDTYKYDS 505 >gi|284036319|ref|YP_003386249.1| ErfK/YbiS/YcfS/YnhG family protein [Spirosoma linguale DSM 74] gi|283815612|gb|ADB37450.1| ErfK/YbiS/YcfS/YnhG family protein [Spirosoma linguale DSM 74] Length = 403 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 114/224 (50%), Gaps = 8/224 (3%) Query: 194 RYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 ++VLVNIPA L + GK L VI G+ D+ TP + + I I+ PYW +P++I Sbjct: 181 QFVLVNIPAGELNVFDRTGKRLLPMQVISGKPDKMTPCMVTYIQDIVMYPYWNVPQNIAL 240 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAS 310 +M+ +++D Y+ + N+ ++D K KEV EE+DW S NF + RQ G N++ Sbjct: 241 DEMLPRMKRDLSYIYNQNLQILDAKNKEVDPEEIDWESLSETNFPYRVRQASGCENSLGL 300 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVV-RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K + Y+HDT LF + + + GCVRV+ ++L +L + + + Sbjct: 301 LKFNLANPLAIYLHDTNSRDLFKSTKDHWRSHGCVRVQKPVELANLILGAKTFDADFMNK 360 Query: 370 EVVKTR-KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 ++ + KT P K + PV Y A + F +D+Y L Sbjct: 361 CLIDQKPKTLPTK---KFPVFITYNIADVDAAGKLHFYNDVYSL 401 >gi|218458323|ref|ZP_03498414.1| hypothetical protein RetlK5_02246 [Rhizobium etli Kim 5] Length = 90 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 44/72 (61%), Positives = 56/72 (77%) Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVRV+N+ DL WLL++TP WSR +E+V+ + TP+KLA EVPV+FVYISAW D Sbjct: 1 GCVRVQNVRDLTNWLLRETPGWSRQQMEQVIASGVNTPIKLAAEVPVYFVYISAWGMPDG 60 Query: 402 IIQFRDDIYGLD 413 I+QFRDDIY +D Sbjct: 61 IVQFRDDIYQMD 72 >gi|237721416|ref|ZP_04551897.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449212|gb|EEO55003.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 518 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 120/258 (46%), Gaps = 19/258 (7%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHS 233 +L VN+ R + G +YV+ N+ A L+AV E L + VG V +TP+L S Sbjct: 247 RLLVNMERARWQYALDKGRKYVIANVAAFMLQAVNEETDSILEMRICVGTVKNKTPLLSS 306 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 RI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + W Sbjct: 307 RIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVDPHSIKWAKYAG 366 Query: 294 PN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + +QD N++ F + ++ Y+HDTP F R + GCVR++ +D Sbjct: 367 SGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKALD 426 Query: 352 LDVWLLKDTPTWSR------YHIEEVVKTRKTTPVKLATE----------VPVHFVYISA 395 +LLK+ I+ V + K P+ A +P+ Y + Sbjct: 427 FAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPLFIDYQTV 486 Query: 396 WSPKDSIIQFRDDIYGLD 413 + D+ +++ +DIY D Sbjct: 487 YLSADNNLRYCEDIYKYD 504 >gi|260171549|ref|ZP_05757961.1| ErfK/YbiS/YcfS/YnhG family protein [Bacteroides sp. D2] Length = 518 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 120/258 (46%), Gaps = 19/258 (7%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHS 233 +L VN+ R + G +YV+ N+ A L+AV E L + VG V +TP+L S Sbjct: 247 RLLVNMERARWQYALDKGRKYVIANVAAFMLQAVNEETDSILEMRICVGTVKNKTPLLSS 306 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 RI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + W Sbjct: 307 RIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVDPHSIKWAKYAG 366 Query: 294 PN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + +QD N++ F + ++ Y+HDTP F R + GCVR++ +D Sbjct: 367 SGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKALD 426 Query: 352 LDVWLLKDTPTWSR------YHIEEVVKTRKTTPVKLATE----------VPVHFVYISA 395 +LLK+ I+ V + K P+ A +P+ Y + Sbjct: 427 FAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPLFIDYQTV 486 Query: 396 WSPKDSIIQFRDDIYGLD 413 + D+ +++ +DIY D Sbjct: 487 YLSTDNNLRYCEDIYKYD 504 >gi|160887148|ref|ZP_02068151.1| hypothetical protein BACOVA_05164 [Bacteroides ovatus ATCC 8483] gi|156107559|gb|EDO09304.1| hypothetical protein BACOVA_05164 [Bacteroides ovatus ATCC 8483] Length = 513 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 120/258 (46%), Gaps = 19/258 (7%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHS 233 +L VN+ R + G +YV+ N+ A L+AV E L + VG V +TP+L S Sbjct: 242 RLLVNMERARWQYALDKGQKYVIANVAAFMLQAVNEETDSILEMRICVGTVKNKTPLLSS 301 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 RI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + W Sbjct: 302 RIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVDPHSIKWAKYAG 361 Query: 294 PN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + +QD N++ F + ++ Y+HDTP F R + GCVR++ +D Sbjct: 362 SGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKALD 421 Query: 352 LDVWLLKDTPTWSR------YHIEEVVKTRKTTPVKLATE----------VPVHFVYISA 395 +LLK+ I+ V + K P+ A +P+ Y + Sbjct: 422 FAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPLFIDYQTV 481 Query: 396 WSPKDSIIQFRDDIYGLD 413 + D+ +++ +DIY D Sbjct: 482 YLSADNNLRYCEDIYKYD 499 >gi|315919863|ref|ZP_07916103.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693738|gb|EFS30573.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 513 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 120/258 (46%), Gaps = 19/258 (7%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHS 233 +L VN+ R + G +YV+ N+ A L+AV E L + VG V +TP+L S Sbjct: 242 RLLVNMERARWQYALDKGRKYVIANVAAFMLQAVNEETDSILEMRICVGTVKNKTPLLSS 301 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 RI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + W Sbjct: 302 RIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVDPHSIKWAKYAG 361 Query: 294 PN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + +QD N++ F + ++ Y+HDTP F R + GCVR++ +D Sbjct: 362 SGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKALD 421 Query: 352 LDVWLLKDTPTWSR------YHIEEVVKTRKTTPVKLATE----------VPVHFVYISA 395 +LLK+ I+ V + K P+ A +P+ Y + Sbjct: 422 FAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPLFIDYQTV 481 Query: 396 WSPKDSIIQFRDDIYGLD 413 + D+ +++ +DIY D Sbjct: 482 YLSTDNNLRYCEDIYKYD 499 >gi|293370854|ref|ZP_06617399.1| conserved domain protein [Bacteroides ovatus SD CMC 3f] gi|292634070|gb|EFF52614.1| conserved domain protein [Bacteroides ovatus SD CMC 3f] Length = 513 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 120/258 (46%), Gaps = 19/258 (7%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHS 233 +L VN+ R + G +YV+ N+ A L+AV E L + VG V +TP+L S Sbjct: 242 RLLVNMERARWQYALDKGRKYVIANVAAFMLQAVNEETDSILEMRICVGTVKNKTPLLSS 301 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 RI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + W Sbjct: 302 RIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGFQVDPHSIKWAKYAG 361 Query: 294 PN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + +QD N++ F + ++ Y+HDTP F R + GCVR++ +D Sbjct: 362 SGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKALD 421 Query: 352 LDVWLLKDTPTWSR------YHIEEVVKTRKTTPVKLATE----------VPVHFVYISA 395 +LLK+ I+ V + K P+ A +P+ Y + Sbjct: 422 FAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPLFIDYQTV 481 Query: 396 WSPKDSIIQFRDDIYGLD 413 + D+ +++ +DIY D Sbjct: 482 YLSADNNLRYCEDIYKYD 499 >gi|299148640|ref|ZP_07041702.1| putative periplasmic protein [Bacteroides sp. 3_1_23] gi|298513401|gb|EFI37288.1| putative periplasmic protein [Bacteroides sp. 3_1_23] Length = 513 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 120/258 (46%), Gaps = 19/258 (7%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHS 233 +L VN+ R + G +YV+ N+ A L+AV E L + VG V +TP+L S Sbjct: 242 RLLVNMERARWQYALDKGRKYVIANVAAFMLQAVNEETDSILEMRICVGTVKNKTPLLSS 301 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 RI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + W Sbjct: 302 RIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVDPHSIKWAKYAG 361 Query: 294 PN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + +QD N++ F + ++ Y+HDTP F R + GCVR++ +D Sbjct: 362 SGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKALD 421 Query: 352 LDVWLLKDTPTWSR------YHIEEVVKTRKTTPVKLATE----------VPVHFVYISA 395 +LLK+ I+ V + K P+ A +P+ Y + Sbjct: 422 FAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPLFIDYQTV 481 Query: 396 WSPKDSIIQFRDDIYGLD 413 + D+ +++ +DIY D Sbjct: 482 YLSTDNNLRYCEDIYKYD 499 >gi|170749212|ref|YP_001755472.1| peptidoglycan binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170655734|gb|ACB24789.1| peptidoglycan-binding domain 1 protein [Methylobacterium radiotolerans JCM 2831] Length = 674 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 94/329 (28%), Positives = 144/329 (43%), Gaps = 37/329 (11%) Query: 97 LPIRP-LHLGNSSVSVQRLRERLII----SGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 LP P L +G V LR + + LD G +D+ V AV FQ GL Sbjct: 269 LPAGPVLRVGMRDARVPLLRAHFNLENRPAATLDKGPGEPEEYDSGVADAVAKFQRGRGL 328 Query: 152 DPSGMVDSSTLEAMN------VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 +G ++ T+ A+ P +L VN+ R + L +G Y+LVN+P L Sbjct: 329 PGNGTLNVQTVLALADAGRTARPTGGEA-ELIVNMERWR-WLPGDLGSDYILVNVPEYRL 386 Query: 206 EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 A G + + VIVG+ + +TP+ + + NP W +P SI Sbjct: 387 RAYRGGVMRDEARVIVGKPESRTPLFSGMMEYAVVNPSWYVPPSI--------------- 431 Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHD 325 LK + GK EV + RQ PG+ NA+ K F +++ Y+HD Sbjct: 432 LKTMAPKLAGYGGKTWGGYEVVRRGG---HISLRQPPGERNALGFIKFMFPNQHAVYLHD 488 Query: 326 TPEPILFNNVVRFETSGCVRVRNIIDL-DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 TP LF+ R + GCVRV + L DV L P WS +++++ + T ++L Sbjct: 489 TPNRSLFSASKRDFSHGCVRVDDPFRLADVVL----PNWSEDRLKKLIGKGERT-IRLPE 543 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 ++PVH Y +A+ + D+YG D Sbjct: 544 KLPVHLAYFTAFVDDGGTYRTLPDLYGYD 572 >gi|262040976|ref|ZP_06014198.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041670|gb|EEW42719.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 466 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 96/183 (52%), Gaps = 5/183 (2%) Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPE 292 +N ++ NP W +P ++ +KD++ +R +P YL+ + ++ + ++ VDW++ Sbjct: 267 LNNVVVNPPWNVPPTLARKDILPKVRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWSTIT 326 Query: 293 PPN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 N F F+Q PG N++ K S + Y+HDTP LF VR +SGCVRV Sbjct: 327 ENNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPNHNLFQKDVRALSSGCVRVNKAS 386 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 +L LL+D W+ I + +K T V + +PV+ Y++A+ D Q+R DIY Sbjct: 387 ELANMLLQDA-GWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTAFVDADGRTQYRTDIY 445 Query: 411 GLD 413 D Sbjct: 446 NYD 448 >gi|153807673|ref|ZP_01960341.1| hypothetical protein BACCAC_01955 [Bacteroides caccae ATCC 43185] gi|149130035|gb|EDM21247.1| hypothetical protein BACCAC_01955 [Bacteroides caccae ATCC 43185] Length = 514 Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 121/264 (45%), Gaps = 19/264 (7%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQ 227 D +L VN+ R + + G +YV+ N A L+AV E L + VG V + Sbjct: 237 TDYYRNRLLVNMERARWQYALEKGKKYVVANTAAFMLQAVNEETDSILEMRICVGSVKNR 296 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 TP+L S+I + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + Sbjct: 297 TPLLSSKIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGTQVDPHSIK 356 Query: 288 WNSPEPPN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 W + +QD N++ F + + Y+HDTP F+ R + GCVR Sbjct: 357 WAKYAGKGVPYTVKQDNKAGNSLGRIIFRFPNPYSVYLHDTPSKWAFSRKNRAVSHGCVR 416 Query: 346 VRNIIDLDVWLLKDTPTWSR------YHIEEVVKTRKTTPVKLATE----------VPVH 389 ++ +D +LLK+ I+ V + K P+ A +P+ Sbjct: 417 LQKALDFAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPLF 476 Query: 390 FVYISAWSPKDSIIQFRDDIYGLD 413 Y + + D+ +++ +DIY D Sbjct: 477 IDYQTVYLSADNNMRYCEDIYNYD 500 >gi|323137795|ref|ZP_08072871.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322397092|gb|EFX99617.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 495 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 95/221 (42%), Gaps = 17/221 (7%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +G + VNIP L +G R+ V+VG+ TP+ + ++ NP W +P+SI Sbjct: 279 LGATRIEVNIPQFELALTRDGVKTHRTRVVVGKTSTPTPVFSDTMRYVVINPSWSVPQSI 338 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 I K+M D YL + G+ RQ PG+ NA+ Sbjct: 339 ITKEMAGKHGGDLSYLAARGFKVSYSNGRAS----------------VRQPPGEKNALGR 382 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F + + Y+HDTP LF R + GCVRV L +L W+ + Sbjct: 383 VKFVFPNEFSVYLHDTPSRSLFATARRAYSHGCVRVDQPFALAEAVLTADAGWTEKRLRG 442 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 +V + + LA +PVH Y +A D ++ DDIYG Sbjct: 443 MVGASERR-IDLARPMPVHIEYFTATVDADGQLRLFDDIYG 482 >gi|289804603|ref|ZP_06535232.1| hypothetical protein Salmonellaentericaenterica_09007 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 443 Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 102/188 (54%), Gaps = 8/188 (4%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L E Sbjct: 258 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELST 317 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 318 G---IMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 374 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE--EVDWNSPEPPN--FIFRQDPGKINA 307 +KD++ + DP YL+ + ++ + ++ +VDW + P N F F+Q PG N+ Sbjct: 375 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 434 Query: 308 MASTKIEF 315 + K Sbjct: 435 LGRYKFNM 442 >gi|300727069|ref|ZP_07060488.1| putative cell wall degradation protein [Prevotella bryantii B14] gi|299775613|gb|EFI72204.1| putative cell wall degradation protein [Prevotella bryantii B14] Length = 507 Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/267 (29%), Positives = 129/267 (48%), Gaps = 14/267 (5%) Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQK--MGLRYVLVNIPAASLEAVENGKVGLRS 217 S L+ N+ + R R L VN+ R + L + +YV+VNIPA SL AV+ KV + Sbjct: 234 SRLQKPNITAEQR-RLLLVNMERSRWRLSDYPYLHTKYVIVNIPALSLFAVDGDKVQ-QM 291 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V+VG + +TP+LHS R+ NP W+IP SI+ K +A + Y ++ + + Sbjct: 292 KVVVGALKTKTPLLHSNFTRMDINPQWLIPMSIL-KSSVARFAGNTSYFNRHHYFIRNRS 350 Query: 278 -GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 GK V +V N++ Q+ G N++ F + + Y+HDT +F Sbjct: 351 TGKVVPTNQVTSAMILSGNYVVVQEGGPYNSLGRIIFRFNNDYSIYLHDTNSRGVFQKED 410 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPT-WSRYHIEEVV-------KTRKTTPVKLATEVPV 388 R + GCVRV N DL V++L + + R V K + +K+ ++PV Sbjct: 411 RCLSHGCVRVENPFDLAVFMLDNNKSVIGRIKYSMTVDSVTGPDKNKLIHSMKVMQDIPV 470 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDNV 415 VY + + + ++ D+YG D + Sbjct: 471 FIVYYTLYPNRQGELEQYQDVYGYDQI 497 >gi|299140698|ref|ZP_07033836.1| periplasmic protein [Prevotella oris C735] gi|298577664|gb|EFI49532.1| periplasmic protein [Prevotella oris C735] Length = 472 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/251 (28%), Positives = 117/251 (46%), Gaps = 31/251 (12%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +YVLVNIP+ L AV NG+ L + G + +TP+L SRI R+ NP WVIPRSI +K Sbjct: 213 KYVLVNIPSFHLRAV-NGREVLEMKIGCGTTETKTPLLTSRIMRMDINPQWVIPRSITEK 271 Query: 254 DMMALLRQDPQYLKDNNIHMIDEK-GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 ++ D QY + + D K G++V + + + +++ Q G N++ Sbjct: 272 NIANHF-GDRQYFDSHRYFVRDRKTGQKVPFDRITQDMFHSKDYLVIQKGGIGNSLGRII 330 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT--PTWSRYHI-- 368 F + + ++HDT +F+ R + GC+RV DL V+LLKD + H Sbjct: 331 FRFNNSFSVFLHDTNRHNVFSQENRGVSHGCIRVERPFDLAVFLLKDKNESLIRKLHYSM 390 Query: 369 -------------EEVVKTRKTTP-----------VKLATEVPVHFVYISAWSPKDSIIQ 404 EE +K P +K+ ++P+ Y + + + +Q Sbjct: 391 TAEIGGESTVLPEEEKKMIKKQKPDTLQRSMLISSLKVEPQIPIFITYFTIYPDVNGKLQ 450 Query: 405 FRDDIYGLDNV 415 + D+YG D V Sbjct: 451 YFSDVYGYDKV 461 >gi|149275869|ref|ZP_01882014.1| hypothetical protein PBAL39_21400 [Pedobacter sp. BAL39] gi|149233297|gb|EDM38671.1| hypothetical protein PBAL39_21400 [Pedobacter sp. BAL39] Length = 532 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 84/304 (27%), Positives = 131/304 (43%), Gaps = 53/304 (17%) Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 + L+A + R + +N+ R++ L MG YV VNIP SL V Sbjct: 221 AALKAGGLGSSASARTILINMERLRWKLPD-MGNEYVEVNIPDFSLTWFNKQDTVSHMKV 279 Query: 220 IVGRV-----------------------DRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 VG + +TPIL+S++N I NP W IP SI + ++ Sbjct: 280 CVGGAREANYKEKIATYLKTKSLDDKPKNHETPILYSKLNSIQVNPIWNIPVSIARSEIY 339 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVF-VEEVDWNS--PEPPNFIFRQDPGKINAMASTKI 313 + R+DP YL +NNI+ + KGK V + + WN E F F+Q G NA+ K Sbjct: 340 WMARKDPFYLSNNNIN-VYYKGKLVNDPDTIQWNKYPREKLPFQFKQGSGGGNALGKFKF 398 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE---- 369 F + ++ Y+HDT F R + GCVRV ++ L+ + + +E Sbjct: 399 IFDNGSSIYLHDTNNKTAFGRANRAISHGCVRVERPLEFAEKLVGSKYQYDQLRMEVNLP 458 Query: 370 ------------------EVVKTRKTTPVKLATEVPVHFV--YISAWSPKDSIIQFRDDI 409 + + + P T+ PV + Y++AWS ++ I+FR D+ Sbjct: 459 PLDTTKMNVYRKKLAQKADTLNAFQLKPKWFGTKKPVPLIINYVTAWS-QNGKIEFRPDV 517 Query: 410 YGLD 413 Y LD Sbjct: 518 YRLD 521 >gi|315608208|ref|ZP_07883200.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315250177|gb|EFU30174.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 514 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 118/248 (47%), Gaps = 32/248 (12%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +YVLVNIP+ L AV+ V L V G + +TP+L+S+I R+ NP W+IPRSI++K Sbjct: 264 KYVLVNIPSFKLCAVDGDSV-LEMRVGCGTFETKTPLLYSQIKRMDINPQWIIPRSIVKK 322 Query: 254 DMMALLRQDPQYLKD-----NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 ++ + D Y + NIH G+E+ +++ E F Q GK N++ Sbjct: 323 SIIKHV-GDKNYFESRGYLIKNIHT----GEEIDLDKASLGMLENREFAVIQRGGKGNSL 377 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 F + + Y+HDTP F+ R + GC+RV+ +L ++L + I Sbjct: 378 GRIVFRFDNDFSVYLHDTPSRDFFSREDRGVSHGCIRVQKPFELAKFILGNANDELIRKI 437 Query: 369 EEVVKT---------RKTTPVK------------LATEVPVHFVYISAWSPKDSIIQFRD 407 ++ K+ P+ + +VP+ +Y + + K+ ++ F D Sbjct: 438 AYSIQADISIHRDDKNKSLPIDTLNRKLLIRTCYVKPKVPLFIIYFTIYPDKNGVLTFYD 497 Query: 408 DIYGLDNV 415 D+YG D V Sbjct: 498 DVYGYDQV 505 >gi|288925831|ref|ZP_06419762.1| putative periplasmic protein [Prevotella buccae D17] gi|288337486|gb|EFC75841.1| putative periplasmic protein [Prevotella buccae D17] Length = 505 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 70/248 (28%), Positives = 118/248 (47%), Gaps = 32/248 (12%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +YVLVNIP+ L AV+ V L V G + +TP+L+S+I R+ NP W+IPRSI++K Sbjct: 255 KYVLVNIPSFKLCAVDGDSV-LEMRVGCGTFETKTPLLYSQIKRMDINPQWIIPRSIVKK 313 Query: 254 DMMALLRQDPQYLKD-----NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 ++ + D Y + NIH G+E+ +++ E F Q GK N++ Sbjct: 314 SIIKHV-GDKNYFESRGYLIKNIHT----GEEIDLDKASLGMLENREFAVIQRGGKGNSL 368 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 F + + Y+HDTP F+ R + GC+RV+ +L ++L + I Sbjct: 369 GRIVFRFDNDFSVYLHDTPSRDFFSREDRGVSHGCIRVQKPFELAKFILGNANDELIRKI 428 Query: 369 EEVVKT---------RKTTPVK------------LATEVPVHFVYISAWSPKDSIIQFRD 407 ++ K+ P+ + +VP+ +Y + + K+ ++ F D Sbjct: 429 AYSIQADISIHRDDKNKSLPIDTLNRKLLIRTCYVMPKVPLFIIYFTIYPDKNGVLTFYD 488 Query: 408 DIYGLDNV 415 D+YG D V Sbjct: 489 DVYGYDQV 496 >gi|323136049|ref|ZP_08071132.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322399140|gb|EFY01659.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 537 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 87/321 (27%), Positives = 132/321 (41%), Gaps = 54/321 (16%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP------- 153 P H G Q+LRE+L +L + +A V SA + Q P Sbjct: 248 PPHYG-----YQQLREKLA---ELHSQRAAGLAGAERVASAEEGLQTDADPPPLKSRKRR 299 Query: 154 ---SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 +G +S LEA ++ N+ R + L + +G + VNIP L V Sbjct: 300 AASAGGGSTSALEA----------EIVANMERWR-WLPRDLGDERIEVNIPDFELAVVRG 348 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 G V R+ VIVG+ TPI + I+ NP W +P+SIIQK+ + Q N Sbjct: 349 GMVTHRTRVIVGKEQTPTPIFSDEMVEIIVNPSWYVPQSIIQKEWHGGVGAGYQVSYRNG 408 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 + RQ PG+ NA+ K F + YMHDTP Sbjct: 409 ------------------------QMVVRQPPGEKNALGRIKFVFPNDFAVYMHDTPSRG 444 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 LF R + GC+RV + L +L WS +++++ + + L+ +PVH Sbjct: 445 LFAASHRAFSHGCMRVDDPFALAGAVLGPGSGWSEARVKKLIGPSERY-INLSKPLPVHI 503 Query: 391 VYISAWSPKDSIIQFRDDIYG 411 Y +A+ + + R D+YG Sbjct: 504 QYFTAYVDEGGRLVQRPDLYG 524 >gi|240142210|ref|YP_002966720.1| hypothetical protein MexAM1_META2p0532 [Methylobacterium extorquens AM1] gi|240012154|gb|ACS43379.1| Hypothetical protein MexAM1_META2p0532 [Methylobacterium extorquens AM1] Length = 290 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 101/221 (45%), Gaps = 8/221 (3%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ- 252 R V+VN+ L A +G+ L S V+VGR TP L + + + NP W +P +I++ Sbjct: 66 RLVVVNVAGRFLAAYRDGEPELESRVVVGRDGWHTPDLATSVASVTLNPTWTVPETILRD 125 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 + L DP + + N ++ G+ V + V + E Q PG NA+ K Sbjct: 126 EGWRGELASDPGWAERNGFDVL-LGGRRVAADRV--GTAELLKATLVQRPGADNALGRMK 182 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 I + + Y+HDT EP F++ + GCVRV ++L W+L S + ++V Sbjct: 183 IAMRNAGSIYLHDTNEPGGFDDPGHSGSHGCVRVELALELATWVLGA----SGPEVADLV 238 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 T VPV F Y +AW + + DIY D Sbjct: 239 LGGSTIVRTTPEPVPVVFGYFTAWPDAVGRVAYYPDIYRRD 279 >gi|284038422|ref|YP_003388352.1| ErfK/YbiS/YcfS/YnhG family protein [Spirosoma linguale DSM 74] gi|283817715|gb|ADB39553.1| ErfK/YbiS/YcfS/YnhG family protein [Spirosoma linguale DSM 74] Length = 378 Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 120/251 (47%), Gaps = 14/251 (5%) Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTP 229 L I Q+Q L + L + + ++VNIP+A+L ++ GK L S V+VG+ D TP Sbjct: 126 LTIEQVQETL-NTYRWLNRFRNSKRIVVNIPSATLRVIDRQGKTLLNSRVVVGKADTPTP 184 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY-LKDNNIHMIDEKGKEVFVEEVDW 288 + + I ++ PYW +PRSI+ K+M+ ++++P L N+ +ID KG+ V + V+W Sbjct: 185 LFTAFIPSLVMYPYWNVPRSIMVKEMLPRIQKNPALVLSFLNLDVIDAKGQVVDPKTVNW 244 Query: 289 --------NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 N P + RQ G NA+ K S + Y+HDT F + R + Sbjct: 245 SVSASAVYNGSFP--YRLRQATGCANALGVLKFNVNSPYDVYLHDTNARHAFASENRQLS 302 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKD 400 GC+RV +L LL T +S ++ K V+L VPV Y Sbjct: 303 HGCIRVEKPAELANLLLGYT-RFSDDYLTSCPKNASPKTVQLPVSVPVITTYNVLDIDAA 361 Query: 401 SIIQFRDDIYG 411 IQ D+YG Sbjct: 362 GAIQVYPDVYG 372 >gi|281425838|ref|ZP_06256751.1| putative cell wall degradation protein [Prevotella oris F0302] gi|281400099|gb|EFB30930.1| putative cell wall degradation protein [Prevotella oris F0302] Length = 472 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 31/251 (12%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +YVLVNIP+ L AV NG+ L + G + +TP+L SRI R+ NP WVIPRSI +K Sbjct: 213 KYVLVNIPSFHLRAV-NGREVLEMKIGCGTTETKTPLLTSRIMRMDINPQWVIPRSITEK 271 Query: 254 DMMALLRQDPQYLKDNNIHMIDEK-GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 ++ D QY + + D K G++V + + + +++ Q G N++ Sbjct: 272 NIANHF-GDRQYFDSHRYFVRDRKTGQKVPFDRITQDMFHSKDYLVIQKGGIGNSLGRII 330 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT--PTWSRYHI-- 368 F + + ++HDT +F+ R + GC+RV +L V+LLKD + H Sbjct: 331 FRFNNSFSVFLHDTNRHNVFSQENRRVSHGCIRVERPFELAVFLLKDKNESLIRKLHYSM 390 Query: 369 -------------EEVVKTRKTTP-----------VKLATEVPVHFVYISAWSPKDSIIQ 404 EE +K P +K+ ++P+ Y + + + +Q Sbjct: 391 TAEIGGESTVLPEEEKKMIKKQKPDTLQRSMLISSLKVEPQIPIFITYFTIYPDVNGKLQ 450 Query: 405 FRDDIYGLDNV 415 + D+YG D V Sbjct: 451 YFSDVYGYDKV 461 >gi|307946680|ref|ZP_07662015.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] gi|307770344|gb|EFO29570.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] Length = 429 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 108/207 (52%), Gaps = 9/207 (4%) Query: 85 YQDILSRGGWPELP----IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 Y++ + GG+ +P ++P + V L+ERL+ L + ++ + Sbjct: 208 YREKAANGGFTSIPKGEVLKPEMI---DPRVPTLKERLVQEDFLLAEQHSGSTYNGALVE 264 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ HGL+ G++ STLEA+NV ++ R+ Q+++N+ R ++ + +G YV VN+ Sbjct: 265 AVKNFQSYHGLEVDGIIGKSTLEALNVSINDRLIQMELNMER-RRWMPDNLGDTYVFVNL 323 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 +L+ V NGK + VIVG+ TP+ + + NPYW +P SI ++ + L+ Sbjct: 324 ADQALKVVRNGKTWHTTPVIVGKPYHATPVFSDVMTYVEVNPYWNVPYSISTREYLPKLQ 383 Query: 261 QDPQYLKDNNIHMIDE-KGKEVFVEEV 286 + L + I E KG VF ++ Sbjct: 384 ANANALSEKKHAGISERKGSCVFKRQL 410 >gi|260642730|ref|ZP_05859514.1| putative periplasmic protein [Bacteroides finegoldii DSM 17565] gi|260620827|gb|EEX43698.1| putative periplasmic protein [Bacteroides finegoldii DSM 17565] Length = 512 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 118/258 (45%), Gaps = 19/258 (7%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHS 233 +L +NL R + G +YV+ N+ A L+AV E L + VG V +TP+L S Sbjct: 241 RLLLNLERARWQYALDKGKKYVVANVAAFMLQAVNEETDSILEMRICVGSVRNKTPLLSS 300 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 RI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + W Sbjct: 301 RIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGTQVDPHSIKWAKYAG 360 Query: 294 PN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + +QD N++ F + + Y+HDTP F R + GCVR++ +D Sbjct: 361 KGVPYTVKQDNKTGNSLGRIIFRFPNPYSVYLHDTPSRWAFMRKNRAVSHGCVRLQKALD 420 Query: 352 LDVWLLKDTPTWSRYHI------EEVVKTRKTTPVKLATE----------VPVHFVYISA 395 +LL++ I + + + K P+ A VP+ Y + Sbjct: 421 FAFFLLEEPDELLEDRIRIAMDLKPISEEGKKLPISAAYRELKHYSLEKYVPLFIDYQTV 480 Query: 396 WSPKDSIIQFRDDIYGLD 413 + D+ + + DDIY D Sbjct: 481 YLSADNNLMYCDDIYKYD 498 >gi|282877810|ref|ZP_06286623.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] gi|281300126|gb|EFA92482.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] Length = 361 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/273 (26%), Positives = 130/273 (47%), Gaps = 34/273 (12%) Query: 174 RQLQVNLMRIKKLLEQKMGL--RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 R++ NL R + L+ + G +Y L+N+P+ L A ++ K L + +G +D +TP++ Sbjct: 82 RKVICNLERARWRLDDEPGKHEKYALINLPSMHLMARDHDKT-LSMRIGIGALDTKTPLI 140 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEEVDWN 289 SRI R+ NP WV+PRSII+K ++ + D + I E+ GK + V +V + Sbjct: 141 TSRIVRMDVNPQWVMPRSIIEKSVVPQAGNKDYF--DARRYFIRERKTGKRMDVTQVSAD 198 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 + N+ Q+ GK NAM F ++ Y+HDT +F R + GC+R+ Sbjct: 199 MLKSGNYFVIQEGGKGNAMGRIVFRFKNKFAIYLHDTSSKGVFEREDRGVSHGCIRLEKP 258 Query: 350 IDLDVWLLKDTPTWS----RYHIE-----------------------EVVKTRKTTPVKL 382 D V+LL D + RY +E ++ + + V++ Sbjct: 259 FDFAVFLLNDKDEKTIERIRYSMEADIHSTYMDDNPSSDKKPSMETNKLDRAKLIKSVQV 318 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 VP+ Y + + +++++ D+YG D+V Sbjct: 319 KPTVPLFITYYTLYPNENNVMTEYPDVYGFDSV 351 >gi|255533072|ref|YP_003093444.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter heparinus DSM 2366] gi|255346056|gb|ACU05382.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter heparinus DSM 2366] Length = 512 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 81/290 (27%), Positives = 126/290 (43%), Gaps = 51/290 (17%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV-------- 224 + + VN+ R++ L +G +V VNIP +L V VG Sbjct: 214 FKTVMVNMERLRWKLPD-LGEEHVEVNIPDFTLTWFSGQDTLSHMKVCVGGAREKDYAEK 272 Query: 225 ---------------DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 + +TPIL+S++N I NP W IP SI + ++ +DP YL +N Sbjct: 273 IKLYLKSGNLDDKPKNHETPILYSKLNSIQVNPIWNIPVSIARSEIYWQAIRDPYYLSNN 332 Query: 270 NIHMIDEKGKEVFVEEVDWNS--PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTP 327 NI + + + + WN E F F+Q G+ NA+ K F + ++ Y+HDT Sbjct: 333 NIKVYYKGQLVTDPDTIQWNKYPREKLPFQFKQGSGEGNALGKFKFIFDNGSSIYLHDTN 392 Query: 328 EPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL----- 382 F R + GCVRV ++ L+KD + + +E + TT ++L Sbjct: 393 NKSAFARNNRAISHGCVRVEKPLEFAEMLVKDKYQYDQLRMEVNLPPVDTTKMELYRKKL 452 Query: 383 -----------------ATEVPVHFV--YISAWSPKDSIIQFRDDIYGLD 413 T+ PV + YI+AWS ++ IQFR D+YGLD Sbjct: 453 AKKADTLNIFQLKPKWFGTKKPVPLIINYITAWS-QNGTIQFRPDVYGLD 501 >gi|294674104|ref|YP_003574720.1| lipoprotein [Prevotella ruminicola 23] gi|294472724|gb|ADE82113.1| putative lipoprotein [Prevotella ruminicola 23] Length = 496 Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 91/321 (28%), Positives = 141/321 (43%), Gaps = 34/321 (10%) Query: 123 DLDPS-KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR-QLQVNL 180 D DP+ SVA ES F + P + + L M+ + R QL VN+ Sbjct: 167 DYDPALPDTSVAAKKMTESDRLAFLVSSA--PDTYIYKALLREMDKTTNADKRHQLAVNM 224 Query: 181 MRIKKLLEQKMGL-RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R + +E + R +LVNIPA L A++ V L + G V +TP+LHS I+ + Sbjct: 225 ERCRWQIEHPKDVKRQILVNIPAQQLWAIDVDSV-LDMRICCGAVPTKTPLLHSAISYMQ 283 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-EKGKEVFVEEVDWNSPEPPNFIF 298 NP WVIP++I++ +++ D Y N +ID E G + V V N+ Sbjct: 284 VNPEWVIPQNIVKTEVVHHA-GDSAYFARNRYSVIDKESGDTLNVASVGANALLSGKLRI 342 Query: 299 RQDPGKINAMASTKIEFYSRNN--TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 Q G N++ +I F S+N+ Y+HDT F R + GCVRV+ +L +L Sbjct: 343 SQKGGVGNSLG--RIVFRSQNDFSIYLHDTNNRSAFQRDRRTLSHGCVRVQKPFELASFL 400 Query: 357 LKDTPTWS---------------------RYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 L D W+ H + R + + VP++ +Y + Sbjct: 401 LSDVDEWTLESLRISMDIPPVTDRGREWLHKHADAPHPYRLISYHAVKPHVPLYILYYTT 460 Query: 396 W-SPKDSIIQFRDDIYGLDNV 415 + +PK I + D+YG D V Sbjct: 461 FPNPKTGAIDYWPDLYGFDKV 481 >gi|282879885|ref|ZP_06288612.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] gi|281306279|gb|EFA98312.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] Length = 491 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 115/247 (46%), Gaps = 27/247 (10%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +YV+VNIPA L A+++ +V +R V VG +TP+L SRI R+ NP WV+P+SII K Sbjct: 237 KYVMVNIPAMELLAIDHEQV-MRMRVGVGTNTTKTPLLSSRIMRMDVNPQWVMPKSIIDK 295 Query: 254 DMMALLRQDPQYLKDNNIHMID-EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 + A D Y +++ + + E G V +V + Q+ GK NAM Sbjct: 296 SV-ARHAGDSAYFENHRYFIRNRETGNRVDPRQVTSEMLRSGQYFVIQEGGKGNAMGRIV 354 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP----TWSRY-- 366 F + Y+HDT +F+ R + GCVRV +L V+LLKD RY Sbjct: 355 FRFKNNFAVYLHDTSSRGVFDQSNRGVSHGCVRVEKPFELAVFLLKDKDEELIEKMRYSM 414 Query: 367 ------HIEEVVKTRKTTP------------VKLATEVPVHFVYISAWSPKDSIIQFRDD 408 H ++ + P V++ VP++ Y + + + ++ D Sbjct: 415 QADIHSHYQKKLTATSNLPNDTLQESKLINSVRVQPAVPLYITYYTLYPNEQHGMREYQD 474 Query: 409 IYGLDNV 415 IYG D V Sbjct: 475 IYGFDAV 481 >gi|148553414|ref|YP_001260996.1| hypothetical protein Swit_0490 [Sphingomonas wittichii RW1] gi|148498604|gb|ABQ66858.1| Uncharacterized protein [Sphingomonas wittichii RW1] Length = 572 Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 114/249 (45%), Gaps = 21/249 (8%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 +++L++NL R + L R+V+V+ +A L E GK V+VG + +TP+L Sbjct: 338 VQRLRLNLDRARLL--PGPWTRHVVVDAASARLWYYEGGKQRAMMRVVVGAPETETPMLA 395 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMA--LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 + + NPYW +P +IQ+ + + P L+ + + + +EVDW + Sbjct: 396 GMVRYAVLNPYWNVPDYLIQRRLAPKIVAGATPASLRMEVLSDWSASPRRLAGDEVDWPA 455 Query: 291 PEPPNFI--FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + RQ PG+ NAM K F + Y+HDTP+ L + R ++GC+R Sbjct: 456 VAAGRKLVRMRQLPGRDNAMGRVKFIFPNDLGIYLHDTPDKGLLSKADRHLSNGCIR--- 512 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP---VKLATEVPVHFVYISAWSPKDSIIQF 405 L+D P R + P V L +PV+ YI+A +P + I F Sbjct: 513 --------LQDAPGLYRLMFGRPLPAASKQPERDVALPAPIPVYLTYITA-TPTERGIGF 563 Query: 406 RDDIYGLDN 414 D+YG D Sbjct: 564 LKDVYGRDE 572 >gi|260912258|ref|ZP_05918809.1| peptidoglycan binding protein [Prevotella sp. oral taxon 472 str. F0295] gi|260633559|gb|EEX51698.1| peptidoglycan binding protein [Prevotella sp. oral taxon 472 str. F0295] Length = 549 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 108/240 (45%), Gaps = 19/240 (7%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +YVLVN+P+ L+A+E V L + G +D +TP+L+S I R+ NP W+IPRSII+K Sbjct: 301 KYVLVNVPSFHLDAIEGDSV-LTMRMACGTLDTKTPLLNSHIMRMDVNPQWIIPRSIIKK 359 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 +++A + + + G+ V V P++ Q+ G+ N++ Sbjct: 360 EVIAHAGNTDYFDRHRYFILNRSTGRRVDPCSVSAGMLLTPDYFVVQEGGEGNSLGRIVF 419 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD-------------- 359 F + + ++HDT F R + GC+RV+ +L V+LLKD Sbjct: 420 RFNNNFSIFIHDTSSKWAFERGNRGVSHGCIRVQKPFELAVFLLKDKDKSLIDKITYSMQ 479 Query: 360 ----TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 P V R VK+ VP+ Y + + IQ D+YG D V Sbjct: 480 ADLSKPKDGEEPKPRVDYRRLVNSVKVNPNVPLFITYYTLYPDMAGRIQTYADVYGYDQV 539 >gi|197105408|ref|YP_002130785.1| hypothetical protein PHZ_c1945 [Phenylobacterium zucineum HLK1] gi|196478828|gb|ACG78356.1| hypothetical protein PHZ_c1945 [Phenylobacterium zucineum HLK1] Length = 483 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 16/248 (6%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 R + N+ R + L + +G R++LVN +A L E+G+ R VIVGR TP + Sbjct: 231 RLILANMDRARGL-PRALGPRFILVNAASAELRVYEDGEEVDRMPVIVGRPSAATPPMAG 289 Query: 234 RINRIMFNPYWVIPRSIIQKDMMA-LLRQDPQYLKDNNIHMIDEKGKEVFV---EEVDWN 289 I F PYW +P +++++ +LR+ P +L + + + V E+DW Sbjct: 290 VIRYARFRPYWNLPEGMVREEFAPRVLREGPGFLAAAGFEALSDWSPQARVLDPAEIDWR 349 Query: 290 --SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 + + RQ PG N + + K+ + Y+HDTP+ F R ++GC+R+ Sbjct: 350 AVARGERSLRLRQSPGPGNILGNVKLMLPNHLGIYLHDTPDKASFRRSRRTLSAGCIRLA 409 Query: 348 NIIDLDVWLLKDTPTWSR-YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 + L LL+ W E + R V L VPV+ +Y++A + + Sbjct: 410 DADRLTRRLLE----WEEGERPPEGLNQR----VDLPRGVPVYILYLTAERGEGGEVLRH 461 Query: 407 DDIYGLDN 414 D+YG D+ Sbjct: 462 PDLYGRDS 469 >gi|323345681|ref|ZP_08085904.1| cell wall degradation protein [Prevotella oralis ATCC 33269] gi|323093795|gb|EFZ36373.1| cell wall degradation protein [Prevotella oralis ATCC 33269] Length = 507 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/278 (28%), Positives = 125/278 (44%), Gaps = 36/278 (12%) Query: 172 RIRQLQVNLMRIKKLLEQKMGL-----------RYVLVNIPAASLEAVENGKVGLRSTVI 220 R++Q RIK L + +YVLVNIP+ L AV+ V L + Sbjct: 222 RLKQCSTQTERIKMLCNMERCRWRLYDYPWRHRKYVLVNIPSFHLRAVDQDSV-LEMKIG 280 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-K 279 G ++ +TP+L SRI R+ NP WVIPRSI++K + A D Y + ++ + K K Sbjct: 281 CGSLETKTPLLTSRIMRMDLNPQWVIPRSIVRKSI-ANHAGDSAYFASHRYYVRERKTIK 339 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 + V V + ++ Q+ G+ NA+ F + + ++H T P +F R Sbjct: 340 RIPVSLVSRSMLNSSDYFVIQEGGEGNALGRIIFRFNNNFSVFLHYTSAPGVFEQSSRDV 399 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWS----RYHIE------------------EVVKTRKT 377 + GCVRV +DL V+LLK+ RY + V K++ Sbjct: 400 SHGCVRVEKPLDLAVFLLKNKDEKIIEKIRYSMTVDLGNQRDKGQRGVEFRPPVDKSKLI 459 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 +K+ EVP+ Y + + + ++ D+YG D V Sbjct: 460 GSLKVEPEVPLFITYYTLYPDRYGQLEEFPDVYGYDRV 497 >gi|288928347|ref|ZP_06422194.1| lipoprotein [Prevotella sp. oral taxon 317 str. F0108] gi|288331181|gb|EFC69765.1| lipoprotein [Prevotella sp. oral taxon 317 str. F0108] Length = 460 Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 112/241 (46%), Gaps = 21/241 (8%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +YVLVN+P+ L+A+E V L + G +D +TP+L+S I R+ NP W+IPRSII+K Sbjct: 212 KYVLVNVPSYHLDAIEGDSV-LTMRMACGTLDTKTPLLNSHIMRMDVNPQWIIPRSIIKK 270 Query: 254 DMMALLRQDPQYLKDNNIHMIDE-KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 +++ +P Y + + +++ G+ V V P++ Q+ G+ N++ Sbjct: 271 EVVGHA-GNPDYFERHRYFILNRPSGRRVDPANVSAGMLLNPDYFVIQEGGEGNSLGRVV 329 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL--KD----------- 359 F + + ++HDT F+ R + GC+RV+ +L V+LL KD Sbjct: 330 FRFNNNFSIFIHDTSSKWAFDRGSRSVSHGCIRVQKPFELAVFLLGKKDKTLIDKINYSM 389 Query: 360 -----TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 P V R VK+ VP+ Y + + + D+YG D Sbjct: 390 QADLSKPKEGEEKRTRVDYRRLVNSVKVNPNVPLFITYYTLYPDVKGKMHTYADVYGYDK 449 Query: 415 V 415 V Sbjct: 450 V 450 >gi|332880541|ref|ZP_08448215.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681529|gb|EGJ54452.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 508 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 2/166 (1%) Query: 194 RYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +YV VN+ AA+L AV EN L + +G +TP+L SRI R+ NPYW IP SI++ Sbjct: 261 KYVWVNLAAATLYAVDENKPEYLDMKICIGSPKNKTPMLQSRIERVDMNPYWNIPYSIVK 320 Query: 253 KDMMALLRQDPQYLKDNNIHMID-EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 K++ D Y N + + E G+E+ V + + RQD G+ N++ Sbjct: 321 KEIAPRHAGDEAYFSRNRYRIFNKETGEELPPAAVTSDMLTSGRYRVRQDNGEGNSLGRL 380 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 F + + Y+HDT F R + GC+R+ ++L V+LL Sbjct: 381 IFRFPNNFSIYLHDTNNRQAFKRTNRAISHGCIRIEKPLELAVFLL 426 >gi|317502835|ref|ZP_07960937.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315666050|gb|EFV05615.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 509 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 70/251 (27%), Positives = 111/251 (44%), Gaps = 31/251 (12%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +YVLVNIP+ L V V + G D +TP+L SRI R+ NP W++PRSII+K Sbjct: 250 KYVLVNIPSFHLRMVNRDDV-REMKIGCGSKDTKTPLLTSRIIRMDVNPQWIVPRSIIKK 308 Query: 254 DMMALLRQDPQYLKDNNIHMIDEK-GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 ++ D Y ++ + K GK++ +++ +++ Q G N++ Sbjct: 309 SIVNHC-GDRHYFDSHHFFVRHRKTGKKIPFDQITREMLLSKDYLVIQTGGLGNSLGRII 367 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW--SRYHI-- 368 F + + ++HDT + +F+ R + GCVRV DL V+LLKD + H Sbjct: 368 FRFPNGFSVFLHDTNQQNIFSQTDRDVSHGCVRVERPFDLAVFLLKDKEASIIRKLHYSM 427 Query: 369 -------------EEVVKTRKTTPVKLAT-----------EVPVHFVYISAWSPKDSIIQ 404 EE KT P L +VP++ Y + + +Q Sbjct: 428 TAKIGEEGVNSSEEEHKNMEKTRPDTLKKSLILRSLSVEPQVPIYLTYFTIYPDGKGKLQ 487 Query: 405 FRDDIYGLDNV 415 D+YG D V Sbjct: 488 HFADVYGFDKV 498 >gi|330996788|ref|ZP_08320660.1| conserved domain protein [Paraprevotella xylaniphila YIT 11841] gi|329572510|gb|EGG54161.1| conserved domain protein [Paraprevotella xylaniphila YIT 11841] Length = 508 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 3/190 (1%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG-LRSTVIVGRVDRQTPILH 232 R+ +N+ R + + +YV VN+ AA L AV+ K L + +G +TP+L Sbjct: 241 RKAIINIERSRWRTPRAAHDKYVWVNLAAAKLYAVDEKKPEYLDMKICIGSPKSKTPMLQ 300 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-EKGKEVFVEEVDWNSP 291 SRI R+ NPYW IP SI++K++ + Y N + E G+E+ V + Sbjct: 301 SRIERVDMNPYWNIPYSIVKKEIAPRHAGNEAYFSRNRYRIFSKETGEELPPAAVTADML 360 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQD G+ N++ F + + Y+HDT F R + GC+R+ ++ Sbjct: 361 TSGRYRVRQDNGEGNSLGRLIFRFPNNFSIYLHDTNNKQAFKRTNRAISHGCIRIEKPLE 420 Query: 352 LDVWLLKDTP 361 L V+LL DTP Sbjct: 421 LAVFLL-DTP 429 >gi|288801197|ref|ZP_06406652.1| peptidoglycan-binding domain 1 [Prevotella sp. oral taxon 299 str. F0039] gi|288331808|gb|EFC70291.1| peptidoglycan-binding domain 1 [Prevotella sp. oral taxon 299 str. F0039] Length = 460 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 117/245 (47%), Gaps = 26/245 (10%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +YVLVN+P+ L+AV+ V V G + +TP+L+S I R+ NP W+IP SI++K Sbjct: 209 KYVLVNVPSFYLQAVDEDSV-FSMRVACGALSTKTPLLNSTIERMDINPQWIIPLSIVKK 267 Query: 254 DMMALLRQDPQYLKDNNIHMIDE--KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 +++ L ++ D++ + I GKE+ + EV + + Q G+ NA+ Sbjct: 268 QIISQLGN--RHYFDSHSYFIRHVATGKEIDISEVTPDMLLSGAYKVVQRGGEGNALGRI 325 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT----------- 360 F + + Y+HDT F+ R + GC+RV ++L ++LL+D Sbjct: 326 VFRFPNNFSVYLHDTSSREAFSRFDRGVSHGCIRVEKPLELAIFLLQDKEEALIDKLIYS 385 Query: 361 -----PTWSRYHIEEVV-----KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 T SR + ++ + + R L VP+ Y + + + +++ D+Y Sbjct: 386 TTVDMKTDSRNNEKDCLENKIDRKRLINSKSLKPSVPLFITYYTLYPDEKGVMRDYPDVY 445 Query: 411 GLDNV 415 G D V Sbjct: 446 GYDKV 450 >gi|281422421|ref|ZP_06253420.1| putative cell wall degradation protein [Prevotella copri DSM 18205] gi|281403484|gb|EFB34164.1| putative cell wall degradation protein [Prevotella copri DSM 18205] Length = 451 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 10/230 (4%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +YV+VNIP+ L A+++ L + G +TPIL+S I R+ NP W +PRSI+ Sbjct: 215 KYVVVNIPSFHLLAIDHQDT-LSMRIGCGASKTKTPILNSHIKRMELNPQWFVPRSIVLH 273 Query: 254 DMMALLRQDPQYLKDNNIHMID-EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 DM+ + + Y + N ++ + GKEV ++ V + + Q GK NA+ Sbjct: 274 DMIHRV-GNHGYFRARNYYVREVATGKEVDLDRVTRSMLISGAYGIAQRGGKGNALGRII 332 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI---- 368 F + + ++HDT +F R + GC+R+ D V+LL D + I Sbjct: 333 FRFDNNFSVFLHDTNSKGVFGQEDRGVSHGCIRIEKPYDFAVFLLADKNEKLKEKIYYSM 392 Query: 369 -EEVVKTRK--TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + + +K VK+ +VP+ Y + + I D+YG D + Sbjct: 393 TADSLANKKLVVNNVKVNPQVPLFITYYTLYPLAGGRIADYSDVYGFDAI 442 >gi|85709388|ref|ZP_01040453.1| hypothetical protein NAP1_10923 [Erythrobacter sp. NAP1] gi|85688098|gb|EAQ28102.1| hypothetical protein NAP1_10923 [Erythrobacter sp. NAP1] Length = 460 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 109/240 (45%), Gaps = 18/240 (7%) Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR-QTPILHSR 234 +Q N+ R + L + +G +Y++ N+P L ++ +VG+ R TP L Sbjct: 203 IQANMDRWR-WLARDLGTQYLITNVPEYQLRLTVRDRIISTYRTVVGKPGRTATPQLAEM 261 Query: 235 INRIMFNPYWVIPRSIIQKDMMA-LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 + ++FNP W +P+SI++ + + + +P + + N +G ++ V Sbjct: 262 VEGVVFNPTWTVPQSIVKGEGLGERVLGNPGWARANGYTAT--RGSNGWITVV------- 312 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 Q PG N++ K+E + + + HDTP LF N R + GC+R ++L Sbjct: 313 ------QQPGPGNSLGRMKLEMPNPHAIFFHDTPSRHLFANANRALSHGCIRTERALELA 366 Query: 354 VWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + + +R E+ + K T V + ++P + Y + + ++ DDIYG D Sbjct: 367 ITMAILGKGATRDEAVEIATSGKYTKVMIEKQLPAYITYFTMGVDIEGELRTFDDIYGRD 426 >gi|326386118|ref|ZP_08207742.1| hypothetical protein Y88_2010 [Novosphingobium nitrogenifigens DSM 19370] gi|326209343|gb|EGD60136.1| hypothetical protein Y88_2010 [Novosphingobium nitrogenifigens DSM 19370] Length = 505 Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 113/248 (45%), Gaps = 26/248 (10%) Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR-QTPI 230 +I ++ N+ R + L + +GL+Y+++N+P L N K+ IVGR + TP Sbjct: 247 QIAMIRANMDRWR-WLGRDLGLQYLIINVPEQELRLTVNNKIIRTYKAIVGRPGKTATPQ 305 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 L ++ ++FNP W +P+SI+ + + KD +I K + V S Sbjct: 306 LAEQVKNVVFNPTWTVPQSIVVGEGLG---------KD----LIAHPAKAKRLGYVATQS 352 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + Q PG NA+ K++ + + Y+HDTP LFN R + GC+R Sbjct: 353 AD-GTITVVQQPGNTNALGRVKLDMPNDHAIYIHDTPNRTLFNQPQRALSHGCIRAERAT 411 Query: 351 DLDVW---LLKDTP--TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 +L + L D P T Y + + K T V +A PV+ Y + + +++ Sbjct: 412 ELAMTMAILGADLPPQTAVDYSL-----SGKYTKVPMAKPFPVYITYFTVARDVNGLMRS 466 Query: 406 RDDIYGLD 413 D+YG D Sbjct: 467 FPDLYGRD 474 >gi|261880240|ref|ZP_06006667.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270333074|gb|EFA43860.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 458 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/248 (27%), Positives = 112/248 (45%), Gaps = 27/248 (10%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +YVLVNIP+ L AV+ KV L + G +TP++ S I R+ NP WV+P+SI++K Sbjct: 203 KYVLVNIPSFHLRAVDGDKV-LTMRIAFGSNKNKTPLIVSAIKRMDVNPQWVMPKSIVRK 261 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 ++ L + ++ + G+ V V V E ++ Q G+ NAM Sbjct: 262 SVVPQLGNINYFTQNRYFIRNRQTGEHVDVSSVSPEMLESGDYFVIQRGGEGNAMGRIVF 321 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL--KDTPTWSRYHI--- 368 F + + Y+HDT +F+ VR + GC+RV +L ++L KD R + Sbjct: 322 RFDNNLSIYLHDTSSRTIFDRSVRNVSHGCIRVEKPFELSKFVLAKKDDKLVDRINYSMH 381 Query: 369 ----------EEVV-----------KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 EE+ ++R V + VP+ +Y + + I+ Sbjct: 382 ADVSPVNMKKEEMTERMMLVADTLDRSRLIGSVNIKPMVPIFILYYTMYPDASGKIETFS 441 Query: 408 DIYGLDNV 415 D+YG D++ Sbjct: 442 DVYGYDSL 449 >gi|148554282|ref|YP_001261864.1| hypothetical protein Swit_1361 [Sphingomonas wittichii RW1] gi|148499472|gb|ABQ67726.1| Uncharacterized protein [Sphingomonas wittichii RW1] Length = 418 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 96/241 (39%), Gaps = 31/241 (12%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L+ NL R + + + +G RY+ VNIP L + NG V+VG TP L Sbjct: 191 RLRANLERWR-WMPRDLGDRYIYVNIPGYRLSVINNGIEEASYNVVVGAPRTPTPQLELY 249 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 I+ NP W +P SI++ + I V W Sbjct: 250 AQSIVANPGWTVPHSIVKAGGT----------RGKGFRWIRNPDGSVSA----W------ 289 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 Q PG NA+ KI+ + + Y+HDTP +F R + GC+RV NI +L Sbjct: 290 -----QAPGPTNALGRIKIDMPNPHAIYLHDTPNRAVFARENRALSHGCIRVENIEELAA 344 Query: 355 WLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 L + KT +L VPV+ VY +A + D ++ D YG D Sbjct: 345 MLQGGDGL-----DAALADPGKTKVFQLERSVPVYLVYFTAQADPDGTVRPLGDPYGRDK 399 Query: 415 V 415 Sbjct: 400 A 400 >gi|85374905|ref|YP_458967.1| hypothetical protein ELI_10390 [Erythrobacter litoralis HTCC2594] gi|84787988|gb|ABC64170.1| hypothetical protein ELI_10390 [Erythrobacter litoralis HTCC2594] Length = 473 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/246 (23%), Positives = 111/246 (45%), Gaps = 18/246 (7%) Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR-QTPI 230 R + ++ N+ R + L + +G +Y++ N+P L N K+ IVG+ R TP Sbjct: 211 RFKLIRANMDRWR-WLPRDLGGQYLMTNVPEYQLRLTVNDKIVRTYKTIVGKPGRTATPQ 269 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMM-ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 L + ++ NP W +P+SI++ + + A + +P + + KG +V V Sbjct: 270 LAEVVEGVILNPTWTVPQSIVKGEGLGAKVLNNPGWARAKGYKAT--KGANGWVTVV--- 324 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 Q PG N++ K++ +R+ ++HDTP LF R + GC+R Sbjct: 325 ----------QQPGPTNSLGRMKLDMPNRHAIFLHDTPSRNLFGTSNRALSHGCIRTERA 374 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 +L + L + E++ + + T V ++PV+ Y + + D + D+ Sbjct: 375 TELALTLSILQAGLTADEGVELLNSGEYTRVGFEKKMPVYITYFTMATDIDGKLSTFKDL 434 Query: 410 YGLDNV 415 YG D+ Sbjct: 435 YGRDDA 440 >gi|204789654|gb|ACI02035.1| hypothetical protein [uncultured bacterium] Length = 397 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 3/167 (1%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +YVLVNIP+ L A++ L + G +TPIL+S I R+ NP W +PRSI+ K Sbjct: 230 KYVLVNIPSFHLYAIDEQDT-LAMKIGCGSTKTKTPILNSYIKRMDLNPKWFVPRSIMVK 288 Query: 254 DMMALLRQDPQYLKDNNIHMIDEK-GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 DM+ +P Y N ++ D G+EV +V + Q GK N++ Sbjct: 289 DMVHHA-GNPAYFNARNYYISDRSTGEEVNPAQVTRTMLLSGKYGVVQRGGKGNSLGRII 347 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 F + + Y+HDT +F+ R + GC+RV +L +LL + Sbjct: 348 FRFDNNFSVYLHDTSSQAVFSREDRDVSHGCIRVEKPFELAKFLLHE 394 >gi|149185534|ref|ZP_01863850.1| hypothetical protein ED21_20954 [Erythrobacter sp. SD-21] gi|148830754|gb|EDL49189.1| hypothetical protein ED21_20954 [Erythrobacter sp. SD-21] Length = 475 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 62/262 (23%), Positives = 119/262 (45%), Gaps = 27/262 (10%) Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR-QTPI 230 RI+ ++ N+ R + L Q +G +Y++ N+P L NG++ IVG+ R TP Sbjct: 208 RIKLIRANMDRWR-WLPQDLGRQYLVTNVPEYMLRLTVNGRIIKSYRTIVGKPGRTATPQ 266 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMA-LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 L + ++FNP W +P+SI+ + + + +P + + N KG ++ V Sbjct: 267 LAEMVEAVIFNPTWTVPQSIVVGEGLGNKVLNNPGWAR--NAGYKATKGANGWITVV--- 321 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 Q PG N++ K++ + + ++HDTP LFN R + GC+RV+ Sbjct: 322 ----------QQPGPTNSLGLMKLDMPNEHAIFLHDTPSRHLFNQDARALSHGCIRVKGA 371 Query: 350 IDLDVWL--------LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 +L + + D P + + E+ + + T ++ + PV+ Y + + + Sbjct: 372 RELAMTMSMLGNASNRADIPA-IQEEVSEITMSGEYTRYEMKKQWPVYITYFTMATDVNG 430 Query: 402 IIQFRDDIYGLDNVHVGIIPLP 423 ++ DIY D + + P Sbjct: 431 EMKTFRDIYDRDKPVLAALDAP 452 >gi|296283068|ref|ZP_06861066.1| hypothetical protein CbatJ_05580 [Citromicrobium bathyomarinum JL354] Length = 468 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/248 (23%), Positives = 108/248 (43%), Gaps = 18/248 (7%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR- 226 P R + +Q N+ R + L + +G +Y++ N+P L N K+ IVG+ R Sbjct: 203 PGSKRYKLIQANMDRWR-WLPRDLGHQYLITNVPEYQLRLTVNDKIMRTYRTIVGKPGRT 261 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMA-LLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 TP L + ++ NP W +P+SI++ + + + +P + +G ++ Sbjct: 262 ATPQLAESVEGVILNPNWTVPQSIVKGEGLGERVLGNPSWAASKGYKAT--RGANGYISV 319 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 V Q PG NA+ K++ +R+ + HDTP LF+ R + GC+R Sbjct: 320 V-------------QGPGPGNALGRMKLDMPNRHAIFFHDTPSRGLFSQADRALSHGCIR 366 Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 +L + L + E + + + T V+ +++P + Y + + D + Sbjct: 367 TERATELALTLAILQAGLTADEGVEKLASGEYTRVEFNSKMPAYITYFTMGTTIDGEMAT 426 Query: 406 RDDIYGLD 413 DIY D Sbjct: 427 FKDIYDRD 434 >gi|46204583|ref|ZP_00209472.1| COG2989: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 259 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/137 (35%), Positives = 71/137 (51%), Gaps = 8/137 (5%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPI----RPLHLGNSSVSVQRLRERLIISG 122 +P + +T +T +A YQ GGW LP +P G+S ++ LR L ++G Sbjct: 127 LPTFTAQTFVETMRAAERYQVYAEAGGWKTLPADFAPKP---GDSHPAIPSLRHHLTLTG 183 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DL S +D + +AVK FQ RHGL +G+ TL A+NVP ++R RQL+ + R Sbjct: 184 DLPADAPPSDRYDPPLVAAVKSFQARHGLPDAGIFGRLTLNALNVPAEVRQRQLRASAQR 243 Query: 183 IKKLLEQKMGLRYVLVN 199 + G RYV VN Sbjct: 244 LMG-SSFAFGERYVTVN 259 >gi|218458505|ref|ZP_03498596.1| hypothetical protein RetlK5_03208 [Rhizobium etli Kim 5] Length = 239 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 69/127 (54%), Gaps = 3/127 (2%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 V+ FQ GL G++ +T+ AM +I +L+V M + L + +G RYV++N Sbjct: 94 VEDFQKERGLKADGVIGQATVRAMTGGDTNASKIDKLEV-AMEQARWLPEDLGSRYVMIN 152 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 PA ++GK L V+VG + QT + I + FNP+W +P+SII +M+ L Sbjct: 153 QPAYMAYYHDDGKEQLSMRVVVGGKNNQTYFFNDEIETVEFNPFWGVPQSIIINEMLPKL 212 Query: 260 RQDPQYL 266 R DP YL Sbjct: 213 RSDPNYL 219 >gi|103486925|ref|YP_616486.1| hypothetical protein Sala_1440 [Sphingopyxis alaskensis RB2256] gi|98977002|gb|ABF53153.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256] Length = 409 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 99/240 (41%), Gaps = 17/240 (7%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 + ++VN+ R + + + +G RYV+ N+P V G V +VG+ TP L+ Sbjct: 143 QAIRVNMERWR-WMPRDLGERYVVSNVPEYLTRVVHGGTVIATHKAVVGKKSTPTPQLNP 201 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 I+ NP W +PRSII + + A + ++P + + GK + V Sbjct: 202 MATGIIVNPNWTLPRSIINEGIGATIARNPAAARAQG-YTWTGSGKTLSVV--------- 251 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 Q PG NA+ K+E + + Y+HDTP FN R + GC+R + Sbjct: 252 ------QKPGPNNALGVMKMEMLNEHAIYLHDTPSKNAFNAAARAFSHGCIRTERALHFS 305 Query: 354 VWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + S E + + KTT PV+ Y + ++ D+Y D Sbjct: 306 GLMAVMFAGRSPEEFGEAIASGKTTRFGFDQPFPVYVAYWTVVPDGKGGVKKLADLYERD 365 >gi|87198452|ref|YP_495709.1| hypothetical protein Saro_0427 [Novosphingobium aromaticivorans DSM 12444] gi|87134133|gb|ABD24875.1| conserved hypothetical protein [Novosphingobium aromaticivorans DSM 12444] Length = 499 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/245 (23%), Positives = 104/245 (42%), Gaps = 21/245 (8%) Query: 175 QLQVNLMRIK----KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR-QTP 229 Q Q L+R + L + +G +Y+L N+P L K+ VIVG+ + TP Sbjct: 239 QKQAALIRANMDRWRWLARDLGTQYLLANVPEQVLRLTVRNKIISTYKVIVGKPGKTATP 298 Query: 230 ILHSRINRIMFNPYWVIPRSII-QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 L + ++FNP W +P+SI+ + + A L +P+ + + ++V Sbjct: 299 QLAETVEGVIFNPTWTVPQSIVVGEGLGARLVNNPRQAEREGYKVTKAGDGTIYVV---- 354 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 Q PG N++ K++ + + ++HDTP LFN R + GCVRV Sbjct: 355 -----------QQPGDNNSLGRMKLDMPNEHAIFLHDTPNRNLFNLPARALSHGCVRVER 403 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 +L + + + ++ T V + PV+ Y + + +++ D Sbjct: 404 ATELAMTMAILGAGMTPDDAVAAHTSKVYTKVPMTKTFPVYLTYFTVARDVNGMLRSFPD 463 Query: 409 IYGLD 413 IY D Sbjct: 464 IYNRD 468 >gi|218515096|ref|ZP_03511936.1| hypothetical protein Retl8_16076 [Rhizobium etli 8C-3] Length = 152 Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 11/139 (7%) Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 G V VDW N RQ P NA+ KI F + + YMHDTP F +R Sbjct: 4 GHAVASSSVDWYG-STDNVSVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDMR 62 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK---TRKTTPVKLATEVPVHFVYIS 394 + GCVR+ N + +L T +++V K + + V++ ++PV+ Y + Sbjct: 63 ALSHGCVRLSNPRAMAAAVLGTT-------VDDVAKQIASGQNHAVRVPQKIPVYVSYFT 115 Query: 395 AWSPKDSIIQFRDDIYGLD 413 AW K+ ++++ DD+YG D Sbjct: 116 AWPNKEGVVEYFDDVYGRD 134 >gi|312890410|ref|ZP_07749947.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] gi|311297180|gb|EFQ74312.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] Length = 436 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 83/176 (47%), Gaps = 28/176 (15%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR---------- 223 R + VNL R++ + +YVLVNIP L ++NGK L V VG Sbjct: 248 RAILVNLERLR-WKNKPSESKYVLVNIPDYQLNFMDNGKSILNMKVCVGEGRNKDHSHNL 306 Query: 224 ------------VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 R+TP L+S I NP W IP+SI K+++ +DP YL + NI Sbjct: 307 VEYDDSYQIDRPFSRETPQLNSMIYVAEVNPVWNIPQSIASKEIIVEAAKDPYYLSNKNI 366 Query: 272 HMIDEKGKEVF-VEEVDW---NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYM 323 ++ + G+EV E + W + E ++ F+Q PG N++ K F + N Y+ Sbjct: 367 -VVYKGGQEVEDPETIKWATLSENEKASYSFKQKPGDDNSLGKIKFLFKNSTNVYL 421 >gi|218508835|ref|ZP_03506713.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli Brasil 5] Length = 62 Score = 64.7 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 28/44 (63%), Positives = 35/44 (79%) Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +V+ T TP+KLATEVPV++VYISAW D I+QFRDDIY +D Sbjct: 1 QVIATGVNTPIKLATEVPVYYVYISAWGMPDGIVQFRDDIYQMD 44 >gi|289808938|ref|ZP_06539567.1| hypothetical protein Salmonellaentericaenterica_32767 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 108 Score = 60.5 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL 382 MHDTP LF R +SGCVRV +L LL+D W+ I +K T V + Sbjct: 1 MHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNI 59 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +PV+ Y++A+ D +Q+R DIY D Sbjct: 60 RQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 90 >gi|330860173|emb|CBX70494.1| hypothetical protein YEW_AT04130 [Yersinia enterocolitica W22703] Length = 132 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 55/98 (56%), Gaps = 5/98 (5%) Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 +IVGR R+TP++ S +N ++ NP W +P S++++D++ R D Y + + ++ Sbjct: 1 MIVGRPSRKTPLMSSALNNVVVNPPWNVPTSLVRQDIVPKARYDSSYFQRHGYTVLSGWS 60 Query: 279 KEVFVEE---VDWNSPEPPNFIF--RQDPGKINAMAST 311 + V + +DW+ P NF + RQ PG N++ + Sbjct: 61 NDAEVVDPSMIDWSMISPNNFPYRLRQAPGASNSLGGS 98 >gi|307946679|ref|ZP_07662014.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] gi|307770343|gb|EFO29569.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] Length = 97 Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 +FN R + GC+RV DL LL +S+ +E++ +K T +KL + VH Sbjct: 1 MFNRAQRDFSHGCIRVAKPFDLGDVLL-SPEGYSKGKLEKIRDGQKRTVIKLNKPLKVHL 59 Query: 391 VYISAWSPKDSIIQFRDDIYGLDNV 415 Y++AW KD FR DIY D V Sbjct: 60 TYLTAWMNKDGSTHFRRDIYSRDAV 84 >gi|254501948|ref|ZP_05114099.1| hypothetical protein SADFL11_1986 [Labrenzia alexandrii DFL-11] gi|222438019|gb|EEE44698.1| hypothetical protein SADFL11_1986 [Labrenzia alexandrii DFL-11] Length = 522 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 4/203 (1%) Query: 92 GGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GG+ L I+ L G V LR R+ G + G + FD + AV + R+ Sbjct: 183 GGFTYLDIQEELSPGAQGDQVPDLRRRMFEDGLVGEGTGGEL-FDKRLAFAVAQSKHRYV 241 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L S V + A+N+P++ RI Q+ + RI+ + + ++ + +N E+ Sbjct: 242 LPVSSEVTPRLIRALNIPIERRIEQVSNAMERIRWIPPEFSRVK-LFINKGENQFVFSES 300 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 G+V + DR + I + F+P W +P + +++ L+ DP ++ Sbjct: 301 GRVVMEGQAFANCPDRNHANTATAIEAVTFHPTWQVPLEFLGNELLPRLKDDPTEVEGVG 360 Query: 271 IHMIDEKGKEVFVEEVDWNSPEP 293 ++ KG +V + + W P Sbjct: 361 YYL-RRKGADVPLSSLPWGQATP 382 >gi|312890411|ref|ZP_07749948.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] gi|311297181|gb|EFQ74313.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] Length = 91 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 39/80 (48%) Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 +R + GCVR+ +D L D+ + V + T + L +VPV+ Y + Sbjct: 1 MRAVSHGCVRLEKPLDFAHALFGDSAKYKTIEKCIVEDNPEPTSLSLNNKVPVYITYFTC 60 Query: 396 WSPKDSIIQFRDDIYGLDNV 415 WS +QFR DIYGLD V Sbjct: 61 WSDDSGTLQFRKDIYGLDIV 80 >gi|262361435|gb|ACY58156.1| hypothetical protein YPD4_1248 [Yersinia pestis D106004] Length = 412 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ GL G++ T E +NV R L +N+ R++ L ++VNI Sbjct: 326 AVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGHVDN--GIMVNI 383 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTP 229 P SL ++G L S VIVGR R+TP Sbjct: 384 PNYSLNYYKDGAEVLSSRVIVGRPSRKTP 412 >gi|261404540|ref|YP_003240781.1| peptidoglycan-binding domain 1 protein [Paenibacillus sp. Y412MC10] gi|261281003|gb|ACX62974.1| Peptidoglycan-binding domain 1 protein [Paenibacillus sp. Y412MC10] Length = 159 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 36/74 (48%), Gaps = 5/74 (6%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 GWP L G+S V+ L+ L SG + +F A V SAVK FQ R GL Sbjct: 36 GWP-----TLRQGSSGGYVRALQSNLWASGYQSTVGSIDGSFGAGVTSAVKAFQSREGLT 90 Query: 153 PSGMVDSSTLEAMN 166 G+V S + AMN Sbjct: 91 SDGVVGSGSWNAMN 104 >gi|218507870|ref|ZP_03505748.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli Brasil 5] Length = 103 Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%) Query: 34 SVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 S LD ++N +D+FD A R + S+ PI+ +++A ++AI YQ I + G Sbjct: 36 SALDGLLNAPRRGNWDDQFDAKAASRTASAVVSNTPILGPQSVASAQQAIMQYQQIAAAG 95 Query: 93 GWPEL 97 GWPE+ Sbjct: 96 GWPEV 100 >gi|330860172|emb|CBX70493.1| hypothetical protein YEW_AT04120 [Yersinia enterocolitica W22703] Length = 85 Score = 44.7 bits (104), Expect = 0.033, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 DL LL+D W+ + +K TT V + VPV Y++AW D QFR DIY Sbjct: 6 DLANMLLQDA-GWNDARVSSTLKQGDTTYVNIRQRVPVQLYYLTAWVADDGKPQFRTDIY 64 Query: 411 GLD 413 D Sbjct: 65 NYD 67 >gi|291299342|ref|YP_003510620.1| peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] gi|290568562|gb|ADD41527.1| Peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] Length = 323 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 3/105 (2%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 S +P +LGN ++ L +G + G AFDA ESAVK FQ Sbjct: 27 SASAYPNAAFHMQNLGNRGADTLSVQHLLAQAGHQVEATG---AFDAATESAVKKFQESK 83 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 GLD G+V T EA+ ++ V ++++ +Q++ L Sbjct: 84 GLDADGIVGPKTWEALAPNLETGASGEAVKALQVQLNAKQRLSLE 128 >gi|254514047|ref|ZP_05126108.1| general secretion pathway protein A [gamma proteobacterium NOR5-3] gi|219676290|gb|EED32655.1| general secretion pathway protein A [gamma proteobacterium NOR5-3] Length = 563 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +R L LG+S V+R+ E L D P FDA +E VKLFQ + GL G++ Sbjct: 470 LRTLQLGDSGEDVRRVAE-LFARLDRQPKPLTESLFDARLEQRVKLFQQQQGLRADGVLG 528 Query: 159 SSTLEAMNVPV 169 +TL A+++ V Sbjct: 529 ENTLRALSLSV 539 >gi|255637048|gb|ACU18856.1| unknown [Glycine max] Length = 232 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +R +H G ++ V LR L G L + FD VESA+K +Q H L +G+VD Sbjct: 43 LRGVHRGQNAKGVGELRGYLQKYGYLTKGSSSNDNFDENVESALKHYQAFHHLRDTGVVD 102 Query: 159 SSTLEAMNVP 168 T++ M++P Sbjct: 103 DDTIKKMSLP 112 >gi|23013110|ref|ZP_00053052.1| COG2989: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 84 Score = 43.5 bits (101), Expect = 0.069, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 27/53 (50%) Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 P W E + R T + L V+ +Y +AW+ + I+ FRDDIYG D Sbjct: 10 PRWQGKLAENIAANRSTRTLMLERTTQVYMMYWTAWTDEAGILHFRDDIYGHD 62 >gi|268680155|ref|YP_003304586.1| ATP-dependent DNA helicase RecQ [Sulfurospirillum deleyianum DSM 6946] gi|268618186|gb|ACZ12551.1| ATP-dependent DNA helicase RecQ [Sulfurospirillum deleyianum DSM 6946] Length = 596 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 6/96 (6%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARV--DMGID-SDIPIISKETIAQTE 79 G S+ + HA + E NE+YH+ +ND D +A V MGID S+I ++ ++ +T Sbjct: 250 GYSMRVRAYHAGLCTEEKNETYHAFLNDEIDVVVATVAFGMGIDKSNIRFVAHMSLPKTL 309 Query: 80 KAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLR 115 + +YQ+I R G LP L L ++S V+ R Sbjct: 310 E--NYYQEI-GRAGRDGLPSSTLLLFSASDIVEHKR 342 >gi|117929357|ref|YP_873908.1| cell wall hydrolase/autolysin [Acidothermus cellulolyticus 11B] gi|117649820|gb|ABK53922.1| cell wall hydrolase/autolysin [Acidothermus cellulolyticus 11B] Length = 378 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%) Query: 102 LHLGNSSVSVQRLRERLI-------ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + LG+ S +V +R RL +GD D + FD V+ A++ FQ + GL Sbjct: 7 MRLGDRSFAVAEIRHRLAHLGLLSRTNGDHDCVRAACDVFDETVDHAIRAFQQQRGLRTD 66 Query: 155 GMVDSSTLEAMN 166 G+VD+ T A++ Sbjct: 67 GVVDAETFRALD 78 >gi|254489086|ref|ZP_05102290.1| peptidoglycan-binding domain 1 [Roseobacter sp. GAI101] gi|214042094|gb|EEB82733.1| peptidoglycan-binding domain 1 [Roseobacter sp. GAI101] Length = 236 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 79/222 (35%), Gaps = 44/222 (19%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 + +LVNIPA L A + G LRS +IVG +TP L + ++ + F P W Sbjct: 59 KAILVNIPAFELIAFDRGVPVLRSRIIVGTPWHRTPRLTTYVSAVRFRPTW--------- 109 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 R P + E V+ PG+ N + I Sbjct: 110 ------RPTPSMIASG------EYADRVW------------------PPGRNNPLGLVAI 139 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 Y+HDT F+ R + GCVRV+ L ++L + + Sbjct: 140 RLQPGLLVYLHDTNHREKFDQEYRALSHGCVRVQQWDRLVAFVLGI----DLAEVHRLAN 195 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 R+T V A +PV Y + + I DIY L Sbjct: 196 GRETFDVP-APPIPVTLGYFTRFPNAAGQIVDHPDIYRLGQA 236 >gi|290967813|ref|ZP_06559366.1| 3D domain protein [Megasphaera genomosp. type_1 str. 28L] gi|290782172|gb|EFD94747.1| 3D domain protein [Megasphaera genomosp. type_1 str. 28L] Length = 170 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + +G S +VQRL+ LI +G L S G F A AV FQ GLD G+V + T Sbjct: 1 MEMGMSGAAVQRLQYMLIDAGYL--SDGADGVFGAATRDAVTRFQAAKGLDADGVVGTRT 58 Query: 162 LEAM 165 L A+ Sbjct: 59 LTAL 62 >gi|251798289|ref|YP_003013020.1| cell wall hydrolase SleB [Paenibacillus sp. JDR-2] gi|247545915|gb|ACT02934.1| cell wall hydrolase SleB [Paenibacillus sp. JDR-2] Length = 212 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 11/99 (11%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG-LSVAFDAYVESAVKLFQMRHGLDPS 154 E L +G+ V+ L+ERL + LD KG ++ F A +SAV FQ GL P Sbjct: 23 EASAASLKVGSKGTEVKDLQERLYM---LDYYKGNITSYFSASTKSAVAAFQKGAGLKPD 79 Query: 155 GMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKKLLEQKMG 192 G+ S TL A++ V VD + +L R+ +++ + G Sbjct: 80 GVAGSITLHALHKVTVD------RSDLSRMARVVNAEAG 112 >gi|242092574|ref|XP_002436777.1| hypothetical protein SORBIDRAFT_10g008650 [Sorghum bicolor] gi|241915000|gb|EER88144.1| hypothetical protein SORBIDRAFT_10g008650 [Sorghum bicolor] Length = 370 Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDL-DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 H G + ++++ L G L + S G + FDA +E A+K++Q GLD +G +D+S Sbjct: 56 CHFGEQQQGLAKVKDYLSHFGYLPESSSGFNDLFDADLEEAIKVYQRNFGLDVTGAMDAS 115 Query: 161 TLEAMNVP 168 T+ M P Sbjct: 116 TVAQMMAP 123 >gi|329118082|ref|ZP_08246794.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria bacilliformis ATCC BAA-1200] gi|327465742|gb|EGF12015.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria bacilliformis ATCC BAA-1200] Length = 349 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +V++NIP L +GK+ V VG+ QT I +I FNP W IP+S IQK+ Sbjct: 58 HVVINIPQQRLFLYSDGKLSKIYPVAVGKAMTQTNIGSHKIGAKAFNPTWHIPKS-IQKE 116 Query: 255 M 255 + Sbjct: 117 L 117 >gi|298492482|ref|YP_003722659.1| peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] gi|298234400|gb|ADI65536.1| Peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] Length = 249 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 9/77 (11%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERL-IISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 ++ GWP L R + G+ V +Q+L + L + G +D G++ E+AVK Q+R Sbjct: 173 TKEGWPIL--RLGNRGSEVVKLQKLLQNLGFLKGSIDGDFGITT------EAAVKAAQIR 224 Query: 149 HGLDPSGMVDSSTLEAM 165 +GL P G+ +T EA Sbjct: 225 YGLQPDGIAGGATWEAF 241 >gi|218672072|ref|ZP_03521741.1| hypothetical protein RetlG_10705 [Rhizobium etli GR56] Length = 58 Score = 41.2 bits (95), Expect = 0.32, Method: Composition-based stats. Identities = 15/34 (44%), Positives = 24/34 (70%) Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 VK+ +VPV+ Y +AW KD ++++ DD+YG D Sbjct: 7 VKVPQKVPVYVSYFTAWPNKDGVVEYFDDVYGRD 40 >gi|325267376|ref|ZP_08134037.1| ErfK/YbiS/YcfS/YnhG family protein [Kingella denitrificans ATCC 33394] gi|324981171|gb|EGC16822.1| ErfK/YbiS/YcfS/YnhG family protein [Kingella denitrificans ATCC 33394] Length = 363 Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 30/57 (52%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +YV++NIP L NG++ V VG+ QT + RI FNP W IP SI Sbjct: 78 QYVVINIPQQRLFLYNNGRLQKVYPVAVGKAMTQTTLGEHRIGAKAFNPTWHIPLSI 134 >gi|83588974|ref|YP_428983.1| ErfK/YbiS/YcfS/YnhG [Moorella thermoacetica ATCC 39073] gi|83571888|gb|ABC18440.1| ErfK/YbiS/YcfS/YnhG [Moorella thermoacetica ATCC 39073] Length = 294 Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 11/80 (13%) Query: 97 LPIRPLHLGNSSVSV----QRLRER-LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P PL G S V RLRE+ + G D GL E AVK FQ+ HGL Sbjct: 218 MPTGPLKPGQGSPEVITLQARLREKGFYLFGPTDGDYGL------MTELAVKEFQLYHGL 271 Query: 152 DPSGMVDSSTLEAMNVPVDL 171 +G+ D+ TL A+ V L Sbjct: 272 TATGVADARTLRALGFDVPL 291 >gi|332968887|gb|EGK07934.1| ErfK/YbiS/YcfS/YnhG family protein [Kingella kingae ATCC 23330] Length = 305 Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 30/57 (52%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +YV++N+P L NG++ V VG+ QT + RI FNP W IP SI Sbjct: 36 QYVVINVPQQRLFLYNNGRLQKVYPVAVGKAMTQTNLGEHRIGAKAFNPTWHIPLSI 92 >gi|119511408|ref|ZP_01630520.1| Peptidoglycan-binding domain 1 [Nodularia spumigena CCY9414] gi|119463953|gb|EAW44878.1| Peptidoglycan-binding domain 1 [Nodularia spumigena CCY9414] Length = 267 Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 12/74 (16%) Query: 97 LPIRPLHLGNSSVSVQRLRERL----IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 LPI L LG + V++L+ RL ++GD+D G++ E+AVK Q R+GL+ Sbjct: 200 LPI--LRLGMRNSEVRKLQARLKQLGFLAGDVDGDFGMNT------EAAVKAAQQRYGLE 251 Query: 153 PSGMVDSSTLEAMN 166 G+V +T EA++ Sbjct: 252 ADGVVGGATWEALS 265 >gi|17231786|ref|NP_488334.1| hypothetical protein all4294 [Nostoc sp. PCC 7120] gi|17133430|dbj|BAB75993.1| all4294 [Nostoc sp. PCC 7120] Length = 508 Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ +V+ +++RL G S L FD Y ++V FQ + L+P+G VDS T Sbjct: 365 LTVGDRGNNVRAVQQRLTQLGFFTGS--LDGYFDEYTRASVASFQQYYQLNPTGNVDSQT 422 Query: 162 LEAMNV 167 +A+N+ Sbjct: 423 WQALNI 428 >gi|75907469|ref|YP_321765.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75701194|gb|ABA20870.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 508 Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 6/56 (10%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 QRL + +G LD FD Y ++V FQ + L+P+G VDS T +A+N+ Sbjct: 379 QRLTQLGFFTGSLDG------YFDEYTRASVASFQQYYQLNPTGNVDSQTWQALNI 428 >gi|15807153|ref|NP_295882.1| hypothetical protein DR_2159 [Deinococcus radiodurans R1] gi|6459963|gb|AAF11713.1|AE002049_18 hypothetical protein DR_2159 [Deinococcus radiodurans R1] Length = 255 Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V++L+ RL+ +DP KG F E+ V +FQ+ +GL P+G+VD +T + P Sbjct: 180 VKQLQLRLMDRSHVDPGKGGDGWFGPVTEANVIVFQLANGLKPTGVVDRATWTTLFSP 237 >gi|15676382|ref|NP_273518.1| hypothetical protein NMB0471 [Neisseria meningitidis MC58] gi|7225699|gb|AAF40908.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|316984751|gb|EFV63710.1| conserved hypothetical protein [Neisseria meningitidis H44/76] gi|325140891|gb|EGC63400.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis CU385] gi|325199656|gb|ADY95111.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis H44/76] Length = 358 Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSI 103 >gi|325202722|gb|ADY98176.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis M01-240149] gi|325208718|gb|ADZ04170.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis NZ-05/33] Length = 358 Score = 40.0 bits (92), Expect = 0.71, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSI 103 >gi|121635388|ref|YP_975633.1| hypothetical protein NMC1677 [Neisseria meningitidis FAM18] gi|161870603|ref|YP_001599775.1| hypothetical protein NMCC_1671 [Neisseria meningitidis 053442] gi|218768765|ref|YP_002343277.1| hypothetical protein NMA2014 [Neisseria meningitidis Z2491] gi|254805501|ref|YP_003083722.1| hypothetical protein NMO_1571 [Neisseria meningitidis alpha14] gi|120867094|emb|CAM10860.1| hypothetical protein NMC1677 [Neisseria meningitidis FAM18] gi|121052773|emb|CAM09119.1| hypothetical protein NMA2014 [Neisseria meningitidis Z2491] gi|161596156|gb|ABX73816.1| conserved hypothetical protein [Neisseria meningitidis 053442] gi|254669043|emb|CBA07504.1| conserved hypothetical protein [Neisseria meningitidis alpha14] gi|254670599|emb|CBA06543.1| hypothetical protein NME_1166 [Neisseria meningitidis alpha153] gi|254672572|emb|CBA06223.1| hypothetical protein NMW_0790 [Neisseria meningitidis alpha275] gi|261391984|emb|CAX49448.1| conserved hypothetical periplasmic protein [Neisseria meningitidis 8013] gi|308388672|gb|ADO30992.1| hypothetical protein NMBB_0524 [Neisseria meningitidis alpha710] gi|319411005|emb|CBY91403.1| conserved hypothetical periplasmic protein [Neisseria meningitidis WUE 2594] gi|325130769|gb|EGC53504.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis OX99.30304] gi|325134836|gb|EGC57472.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis M13399] gi|325136857|gb|EGC59455.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis M0579] gi|325138839|gb|EGC61390.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis ES14902] gi|325142905|gb|EGC65267.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis 961-5945] gi|325198847|gb|ADY94303.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis G2136] gi|325203575|gb|ADY99028.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis M01-240355] gi|325205535|gb|ADZ00988.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis M04-240196] Length = 358 Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSI 103 >gi|20808596|ref|NP_623767.1| LysM repeat-containing protein [Thermoanaerobacter tengcongensis MB4] gi|254479061|ref|ZP_05092416.1| LysM domain protein [Carboxydibrachium pacificum DSM 12653] gi|20517226|gb|AAM25371.1| LysM-repeat proteins and domains [Thermoanaerobacter tengcongensis MB4] gi|214035017|gb|EEB75736.1| LysM domain protein [Carboxydibrachium pacificum DSM 12653] Length = 324 Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Query: 102 LHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L LG+ V L+ RL G D P G+ F E+AVK +Q GL P+G+VD + Sbjct: 179 LRLGDRGPFVVNLQARLKSLGFDPGPIDGI---FGPKTEAAVKAYQQSRGLPPTGIVDET 235 Query: 161 TLEAM 165 T A+ Sbjct: 236 TWNAL 240 >gi|7159629|emb|CAB76364.1| matrix metalloproteinase [Cucumis sativus] Length = 320 Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust. Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 6/76 (7%) Query: 99 IRPLHLGNSSVSVQRLRERL----IISGDLDPSKG--LSVAFDAYVESAVKLFQMRHGLD 152 ++ HLG++ + ++++ L I+ ++ FD +ESA+K +Q H L Sbjct: 51 LQGCHLGDTKQGIHQIKKYLQRFGYITTNIQKHSNPIFDDTFDHILESALKTYQTNHNLA 110 Query: 153 PSGMVDSSTLEAMNVP 168 PSG++DS+T+ + +P Sbjct: 111 PSGILDSNTIAQIAMP 126 >gi|325145008|gb|EGC67291.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis M01-240013] Length = 358 Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSI 103 >gi|325128783|gb|EGC51645.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis N1568] Length = 344 Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI Sbjct: 33 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSI 89 >gi|304386762|ref|ZP_07369030.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis ATCC 13091] gi|304339162|gb|EFM05248.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis ATCC 13091] Length = 365 Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSI 103 >gi|291532676|emb|CBL05789.1| Uncharacterized protein conserved in bacteria [Megamonas hypermegale ART12/1] Length = 395 Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 R++L+NIPA SL +N K V VG+++ +TP+ ++ + NP W P + Sbjct: 52 RWILINIPARSLRLYDNDKCIEMYPVGVGKIETKTPVGFYKVVEKIVNPTWTDPADV 108 >gi|260545357|ref|ZP_05821098.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC 8038] gi|260096764|gb|EEW80639.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC 8038] Length = 517 Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 367 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 425 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 RYV+VN PA E+G+ L V++G Sbjct: 426 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIG 455 >gi|317126727|ref|YP_004100839.1| cell wall hydrolase/autolysin [Intrasporangium calvum DSM 43043] gi|315590815|gb|ADU50112.1| cell wall hydrolase/autolysin [Intrasporangium calvum DSM 43043] Length = 418 Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 8/72 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPS-------KGLSVAFDAYVESAVKLFQMRHGLDPS 154 L G+S +V + RL+++GDL S +G +V FD VE AVK FQ R GL Sbjct: 9 LRRGDSGPAVADVCARLLLTGDLPASWAERGVPRGTAV-FDETVEEAVKSFQQRRGLLVD 67 Query: 155 GMVDSSTLEAMN 166 G+V ST ++ Sbjct: 68 GVVGRSTYSVLD 79 >gi|260883727|ref|ZP_05895341.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260873255|gb|EEX80324.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 9 str. C68] Length = 517 Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 367 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 425 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 RYV+VN PA E+G+ L V++G Sbjct: 426 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIG 455 >gi|225024391|ref|ZP_03713583.1| hypothetical protein EIKCOROL_01266 [Eikenella corrodens ATCC 23834] gi|224942888|gb|EEG24097.1| hypothetical protein EIKCOROL_01266 [Eikenella corrodens ATCC 23834] Length = 310 Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 36/66 (54%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V++NIP L ENG++ V VG+ +TP+ + I +NP W IP SI ++ Sbjct: 33 QHVVINIPQMRLFLYENGQLKNVYPVAVGKNRTRTPLGNYHIGSKAYNPTWSIPASIRRE 92 Query: 254 DMMALL 259 A L Sbjct: 93 RAAAGL 98 >gi|325131741|gb|EGC54443.1| ErfK/YbiS/YcfS/YnhG family [Neisseria meningitidis M6190] Length = 207 Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+S IQK Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKS-IQK 105 Query: 254 D 254 + Sbjct: 106 E 106 >gi|302794749|ref|XP_002979138.1| hypothetical protein SELMODRAFT_110370 [Selaginella moellendorffii] gi|300152906|gb|EFJ19546.1| hypothetical protein SELMODRAFT_110370 [Selaginella moellendorffii] Length = 361 Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 5/99 (5%) Query: 92 GGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRH 149 G W +L + H G+S ++Q+L+ + G L S ++FD +E+AV+L+Q Sbjct: 38 GAWADLLSLVDAHKGDSKPAIQKLKSYFVDFGYLGNSTLTADLSFDDALEAAVRLYQQNF 97 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 L +G +DS+T+ + P R + V+ + ++L+ Sbjct: 98 HLPVTGNLDSATIAQLVTP---RCGGIDVDPSGVSQMLQ 133 >gi|260757925|ref|ZP_05870273.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4 str. 292] gi|260761747|ref|ZP_05874090.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2 str. 86/8/59] gi|260668243|gb|EEX55183.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4 str. 292] gi|260672179|gb|EEX59000.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2 str. 86/8/59] Length = 527 Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 377 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 435 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 RYV+VN PA E+G+ L V++G Sbjct: 436 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIG 465 >gi|260754701|ref|ZP_05867049.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str. 870] gi|260674809|gb|EEX61630.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str. 870] Length = 527 Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 377 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 435 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 RYV+VN PA E+G+ L V++G Sbjct: 436 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIG 465 >gi|310790817|gb|EFQ26350.1| tRNA synthetase class II core domain-containing protein [Glomerella graminicola M1.001] Length = 514 Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 17/90 (18%) Query: 133 AFDAYVESAVKLFQMRHGLDP------SGMVDSSTLEAMNVPVDLRIRQLQVNLMR---- 182 A++ Y E ++++F GL+ SGM LEAM +P D+R+ ++L R Sbjct: 424 AYNPYTEPSMEIFSFHKGLNKLVEIGNSGMFRPEMLEAMGLPKDMRVYGWGLSLERPTMI 483 Query: 183 ------IKKLLEQKMGLRYVLVNIPAASLE 206 I++LL K+ L ++ N PA LE Sbjct: 484 KYGISNIRELLGHKVDLNFIERN-PAVRLE 512 >gi|261213952|ref|ZP_05928233.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str. Tulya] gi|260915559|gb|EEX82420.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str. Tulya] Length = 527 Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R++ L G Sbjct: 377 YDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMERLR-WLPHDFG 435 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 RYV+VN PA E+G+ L V++G Sbjct: 436 KRYVMVNQPAYHAGYYEDGQQKLGMNVVIG 465 >gi|320007102|gb|ADW01952.1| Peptidoglycan-binding domain 1 protein [Streptomyces flavogriseus ATCC 33331] Length = 126 Score = 39.7 bits (91), Expect = 0.89, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 31/64 (48%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S VQ L+ L+ G S G+ F A ESAV+ FQ G+ G+V +T Sbjct: 61 GDSGAKVQELQALLVFKGFSVGSSGVDGQFGAGTESAVRRFQTSRGISSDGVVGPTTWHY 120 Query: 165 MNVP 168 + P Sbjct: 121 LRTP 124 >gi|113475624|ref|YP_721685.1| peptidoglycan binding domain-containing protein [Trichodesmium erythraeum IMS101] gi|110166672|gb|ABG51212.1| Peptidoglycan-binding domain 1 [Trichodesmium erythraeum IMS101] Length = 487 Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L LGN+ + V+RL++RL G + ++ FD E+AV FQ R+ + P+G+V Sbjct: 264 RVLRLGNTGLDVRRLQQRLRSLGYYQ--RQITNYFDLSTETAVIDFQKRNRITPTGIVGQ 321 Query: 160 ST 161 +T Sbjct: 322 TT 323 >gi|294668409|ref|ZP_06733512.1| hypothetical protein NEIELOOT_00327 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309727|gb|EFE50970.1| hypothetical protein NEIELOOT_00327 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 317 Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +V++NIP L +GK+ V VG+ QT + +I FNP W IP+S IQK+ Sbjct: 33 HVVINIPQQRLFLYTDGKLAKIYPVAVGKAMTQTNLGSHKIGAKAFNPIWHIPKS-IQKE 91 Query: 255 M 255 + Sbjct: 92 L 92 >gi|313667851|ref|YP_004048135.1| hypothetical protein NLA_5060 [Neisseria lactamica ST-640] gi|313005313|emb|CBN86746.1| hypothetical protein NLA_5060 [Neisseria lactamica 020-06] Length = 340 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+S IQK Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWHIPKS-IQK 105 Query: 254 D 254 + Sbjct: 106 E 106 >gi|50550865|ref|XP_502905.1| YALI0D16643p [Yarrowia lipolytica] gi|49648773|emb|CAG81096.1| YALI0D16643p [Yarrowia lipolytica] Length = 491 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 17/90 (18%) Query: 133 AFDAYVESAVKLFQMRHGLDP------SGMVDSSTLEAMNVPVDLRIRQLQVNLMR---- 182 A++ Y E ++++F GL SGM LEAM +P DLR+ ++L R Sbjct: 399 AYNPYTEPSLEIFSWHEGLGKWVEIGNSGMFRPEMLEAMGLPKDLRVHGWGLSLERPTMI 458 Query: 183 ------IKKLLEQKMGLRYVLVNIPAASLE 206 I++LL K+ L +V N PA L+ Sbjct: 459 KYGVSNIRELLGHKVSLDFV-ENNPAVRLD 487 >gi|59801822|ref|YP_208534.1| hypothetical protein NGO1484 [Neisseria gonorrhoeae FA 1090] gi|194099286|ref|YP_002002380.1| hypothetical protein NGK_1755 [Neisseria gonorrhoeae NCCP11945] gi|239999553|ref|ZP_04719477.1| hypothetical protein Ngon3_08731 [Neisseria gonorrhoeae 35/02] gi|240014729|ref|ZP_04721642.1| hypothetical protein NgonD_08818 [Neisseria gonorrhoeae DGI18] gi|240017177|ref|ZP_04723717.1| hypothetical protein NgonFA_08426 [Neisseria gonorrhoeae FA6140] gi|240081184|ref|ZP_04725727.1| hypothetical protein NgonF_07718 [Neisseria gonorrhoeae FA19] gi|240113397|ref|ZP_04727887.1| hypothetical protein NgonM_07477 [Neisseria gonorrhoeae MS11] gi|240116255|ref|ZP_04730317.1| hypothetical protein NgonPID1_08470 [Neisseria gonorrhoeae PID18] gi|240121252|ref|ZP_04734214.1| hypothetical protein NgonPI_05693 [Neisseria gonorrhoeae PID24-1] gi|240124087|ref|ZP_04737043.1| hypothetical protein NgonP_09138 [Neisseria gonorrhoeae PID332] gi|240126296|ref|ZP_04739182.1| hypothetical protein NgonSK_08827 [Neisseria gonorrhoeae SK-92-679] gi|240128752|ref|ZP_04741413.1| hypothetical protein NgonS_09032 [Neisseria gonorrhoeae SK-93-1035] gi|254494270|ref|ZP_05107441.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|260439930|ref|ZP_05793746.1| hypothetical protein NgonDG_02373 [Neisseria gonorrhoeae DGI2] gi|268595365|ref|ZP_06129532.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268597296|ref|ZP_06131463.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268599470|ref|ZP_06133637.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268601920|ref|ZP_06136087.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268682710|ref|ZP_06149572.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684880|ref|ZP_06151742.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268687137|ref|ZP_06153999.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291043209|ref|ZP_06568932.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293398537|ref|ZP_06642715.1| hypothetical protein NGNG_01196 [Neisseria gonorrhoeae F62] gi|59718717|gb|AAW90122.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193934576|gb|ACF30400.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|226513310|gb|EEH62655.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548754|gb|EEZ44172.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268551084|gb|EEZ46103.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268583601|gb|EEZ48277.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268586051|gb|EEZ50727.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268622994|gb|EEZ55394.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268625164|gb|EEZ57564.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268627421|gb|EEZ59821.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291012815|gb|EFE04798.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291611008|gb|EFF40105.1| hypothetical protein NGNG_01196 [Neisseria gonorrhoeae F62] gi|317164801|gb|ADV08342.1| hypothetical protein NGTW08_1380 [Neisseria gonorrhoeae TCDC-NG08107] Length = 358 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWHIPKSI 103 >gi|302813804|ref|XP_002988587.1| hypothetical protein SELMODRAFT_128150 [Selaginella moellendorffii] gi|300143694|gb|EFJ10383.1| hypothetical protein SELMODRAFT_128150 [Selaginella moellendorffii] Length = 361 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 5/99 (5%) Query: 92 GGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRH 149 G W +L + H G+S ++Q+L+ + G L S ++FD +E+AV+L+Q Sbjct: 38 GAWADLLSLVDAHKGDSKPAIQKLKSYFVDFGYLGNSTLTADLSFDDALEAAVRLYQQNF 97 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 L +G +DS+T+ + P R + V+ + ++L+ Sbjct: 98 RLPVTGNLDSATIAQLVTP---RCGGIDVDPSGVSQMLQ 133 >gi|240118541|ref|ZP_04732603.1| hypothetical protein NgonPID_08787 [Neisseria gonorrhoeae PID1] gi|268604251|ref|ZP_06138418.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268588382|gb|EEZ53058.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] Length = 358 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWHIPKSI 103 >gi|323309299|gb|EGA62519.1| Frs2p [Saccharomyces cerevisiae FostersO] Length = 305 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 24/120 (20%) Query: 104 LGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDP------SGM 156 LG+ ++ ER+ ++G P+ ++ Y E ++++F GL SGM Sbjct: 188 LGDLIKFMEEFFERMGVTGLRFKPT------YNPYTEPSMEIFSWHEGLQKWVEIGNSGM 241 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMR----------IKKLLEQKMGLRYVLVNIPAASLE 206 LE+M +P DLR+ ++L R I++LL K+ L ++ N PAA L+ Sbjct: 242 FRPEMLESMGLPKDLRVLGWGLSLERPTMIKYKVQNIRELLGHKVSLDFIETN-PAARLD 300 >gi|296315100|ref|ZP_06865041.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria polysaccharea ATCC 43768] gi|296838011|gb|EFH21949.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria polysaccharea ATCC 43768] Length = 326 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+S IQK Sbjct: 33 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWHIPKS-IQK 91 Query: 254 D 254 + Sbjct: 92 E 92 >gi|119488463|ref|ZP_01621636.1| hypothetical protein L8106_23835 [Lyngbya sp. PCC 8106] gi|119455274|gb|EAW36414.1| hypothetical protein L8106_23835 [Lyngbya sp. PCC 8106] Length = 238 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 7/77 (9%) Query: 98 PIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 PIR L G V L++RL I G DP + SV F + E AV+ FQ GL+ +G Sbjct: 77 PIRRYTLEPGTRGTQVTGLQQRLQIHG-FDPGRVDSV-FGSRTEQAVRAFQQARGLEVNG 134 Query: 156 MVDSST---LEAMNVPV 169 +VD T LE PV Sbjct: 135 IVDRGTWKLLETTPRPV 151 >gi|256824326|ref|YP_003148286.1| cell wall-associated hydrolase, invasion-associated protein [Kytococcus sedentarius DSM 20547] gi|256687719|gb|ACV05521.1| cell wall-associated hydrolase, invasion-associated protein [Kytococcus sedentarius DSM 20547] Length = 422 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P+RP H G VQRL+ L G++ P L + A AV+ FQ R GL G+ Sbjct: 40 PLRPGHRGGY---VQRLQWALNKVGNVTPKVALDGVYGAITTRAVRAFQTRQGLLVDGIA 96 Query: 158 DSSTLEAMNVPVD 170 + T ++ +D Sbjct: 97 GTGTKRRLDALLD 109 >gi|261401380|ref|ZP_05987505.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria lactamica ATCC 23970] gi|269208587|gb|EEZ75042.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria lactamica ATCC 23970] Length = 326 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+S IQK Sbjct: 33 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWHIPKS-IQK 91 Query: 254 D 254 + Sbjct: 92 E 92 >gi|226502831|ref|NP_001142095.1| hypothetical protein LOC100274259 [Zea mays] gi|194707100|gb|ACF87634.1| unknown [Zea mays] Length = 370 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDP--SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 HLG + ++++ L G L P S + FDA +E A+K++Q GL +G++D+ Sbjct: 55 CHLGEQQQGLAKVKDYLSRFGYLPPESSGSFNDVFDADLEEAIKVYQRNFGLGITGVMDA 114 Query: 160 STLEAMNVP 168 ST+ M P Sbjct: 115 STVAQMMAP 123 >gi|282600699|ref|ZP_06257697.1| putative cell wall lytic activity [Subdoligranulum variabile DSM 15176] gi|282571458|gb|EFB76993.1| putative cell wall lytic activity [Subdoligranulum variabile DSM 15176] Length = 508 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 34/76 (44%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 S G WP + ++ G+ VQ L P+ + F A E AVK+FQ Sbjct: 49 SSGSWPGVVLKRGSTGSEVEQVQFWLSELAQFNSALPALTVDGNFGAATERAVKIFQQEQ 108 Query: 150 GLDPSGMVDSSTLEAM 165 GL G+V +T EA+ Sbjct: 109 GLTADGVVGQATWEAL 124 >gi|313885142|ref|ZP_07818894.1| peptidase, S41 family [Eremococcus coleocola ACS-139-V-Col8] gi|312619833|gb|EFR31270.1| peptidase, S41 family [Eremococcus coleocola ACS-139-V-Col8] Length = 486 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 3/89 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG S SV L +I++G + S FD E AVK FQ H LD G+V T Sbjct: 400 LSLGQHSDSVANLN--VILNG-MGYSANQKDEFDQDTEKAVKAFQKDHDLDQDGIVTGDT 456 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 A+N+ ++ L + K+L++K Sbjct: 457 SAAINLAAQEYLQNHDGQLDQAIKILKEK 485 >gi|260588566|ref|ZP_05854479.1| spore cortex-lytic enzyme SleC [Blautia hansenii DSM 20583] gi|260541041|gb|EEX21610.1| spore cortex-lytic enzyme SleC [Blautia hansenii DSM 20583] Length = 421 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 11/93 (11%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPS-KGLSV--AFDAYVESAVKLFQMRHGLDPS 154 P +PL +G+S +++++E+L + P+ +SV F ++AVK FQ GL + Sbjct: 337 PGQPLDIGSSGSKIRQIQEQLNAIANAYPALPKISVDGVFGENTQNAVKKFQQIFGLPAT 396 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 G++D ST I+++ V + RI +L+ Sbjct: 397 GIIDYSTW--------YEIQEIYVGVTRIAELV 421 >gi|294787984|ref|ZP_06753228.1| ErfK/YbiS/YcfS/YnhG family protein [Simonsiella muelleri ATCC 29453] gi|294484277|gb|EFG31960.1| ErfK/YbiS/YcfS/YnhG family protein [Simonsiella muelleri ATCC 29453] Length = 378 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 YVL+NIP L NG + V VG+ QT + +I ++P W IP+S IQ + Sbjct: 19 YVLINIPQQRLFLFNNGALEKVYPVAVGKAMTQTNLGEHKIGGKAYDPTWHIPKS-IQAE 77 Query: 255 M 255 M Sbjct: 78 M 78 >gi|75910509|ref|YP_324805.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75704234|gb|ABA23910.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 305 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 GWP L +G + V +L++RL G L G+ F E A+K Q R+G++ Sbjct: 231 GWPIL-----RVGMKNSEVTKLQQRLSQLGFLK--GGVDGYFGVQTEEALKAAQRRYGIE 283 Query: 153 PSGMVDSSTLEAM 165 P G+ +T EA+ Sbjct: 284 PDGVAGGATWEAL 296 >gi|120554152|ref|YP_958503.1| hypothetical protein Maqu_1226 [Marinobacter aquaeolei VT8] gi|120324001|gb|ABM18316.1| conserved hypothetical protein [Marinobacter aquaeolei VT8] Length = 87 Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 15/81 (18%) Query: 81 AIAFYQDILSRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDL-----DPSKGLSVA 133 +A Y+ + +GGWP+LP R L G+ V LR+RL+++G+L D G S+ Sbjct: 4 GLAQYRHLERQGGWPQLPNRQQSLRPGDVHEEVALLRKRLLVTGELAITHVDELAGQSIV 63 Query: 134 --------FDAYVESAVKLFQ 146 +D ++ AV+ FQ Sbjct: 64 SSHPETYEYDEHLVDAVRRFQ 84 >gi|295703171|ref|YP_003596246.1| N-acetylmuramoyl-L-alanine amidase [Bacillus megaterium DSM 319] gi|294800830|gb|ADF37896.1| N-acetylmuramoyl-L-alanine amidase cwlL (Cell wall hydrolase) (Autolysin) [Bacillus megaterium DSM 319] Length = 281 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V+ L+++L G +KG F A +SAV+ FQ HGL G+V ST Sbjct: 117 LKKGSKGNAVKELQQKLTSLGY--NTKGTDGVFGANTDSAVRKFQKDHGLTADGIVGPST 174 Query: 162 LEAM 165 +A+ Sbjct: 175 YKAL 178 >gi|331082131|ref|ZP_08331259.1| hypothetical protein HMPREF0992_00183 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405726|gb|EGG85256.1| hypothetical protein HMPREF0992_00183 [Lachnospiraceae bacterium 6_1_63FAA] Length = 163 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 11/93 (11%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPS-KGLSV--AFDAYVESAVKLFQMRHGLDPS 154 P +PL +G+S +++++E+L + P+ +SV F ++AVK FQ GL + Sbjct: 79 PGQPLDIGSSGSKIRQIQEQLNAIANAYPALPKISVDGVFGENTQNAVKKFQQIFGLPAT 138 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 G++D ST I+++ V + RI +L+ Sbjct: 139 GIIDYSTW--------YEIQEIYVGVTRIAELV 163 >gi|189490384|ref|YP_001956952.1| virion structural protein [Pseudomonas phage 201phi2-1] gi|164609449|gb|ABY63058.1| virion structural protein [Pseudomonas phage 201phi2-1] Length = 262 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 72/186 (38%), Gaps = 32/186 (17%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V RL+ +LI G G+ F E AVK Q+R L G+V ++T Sbjct: 3 LKNGSKGDDVIRLQRKLIGLGYSVKDDGV---FGDNTEKAVKAVQLRFNLKDDGIVGNNT 59 Query: 162 LEAMNVPVDLR-----------IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 ++ P R LQV+L +K + E V PA + + Sbjct: 60 WAVLDTPTTTRPALTDKDYQWAADYLQVDLPAVKAVKE---------VEAPAGGF--LPD 108 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 G+V T++ +R R+N I P+ SI+ K L + +Y + Sbjct: 109 GRV----TIL---YERHVMFKRLRVNGINPEPFAAANPSIVNKSTGGYLGKSAEYTRLEQ 161 Query: 271 IHMIDE 276 IDE Sbjct: 162 AEKIDE 167 >gi|159040579|ref|YP_001539832.1| cell wall hydrolase/autolysin [Salinispora arenicola CNS-205] gi|157919414|gb|ABW00842.1| cell wall hydrolase/autolysin [Salinispora arenicola CNS-205] Length = 387 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 34/69 (49%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +RP+ G+ +V +R L L PS S FDA+ E AV+ FQ GL G V Sbjct: 1 MRPIRPGDRGPAVTEIRRVLAGLDLLVPSAPDSDEFDAHTERAVRAFQQSRGLSVDGRVG 60 Query: 159 SSTLEAMNV 167 + T A++ Sbjct: 61 TETWRALDA 69 >gi|330860174|emb|CBX70495.1| hypothetical protein YEW_AT04140 [Yersinia enterocolitica W22703] Length = 112 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ HGL G++ + T E +NV R L +N+ R+ ++L ++ ++VNI Sbjct: 29 AVKRFQRWHGLSDDGVIGARTREWLNVSPQTRATLLALNIQRL-RILPGRVD-NGIMVNI 86 Query: 201 PAASLEAVENGKVG 214 P SL + G Sbjct: 87 PNYSLNYYKKWHTG 100 >gi|218288979|ref|ZP_03493216.1| Peptidoglycan-binding domain 1 protein [Alicyclobacillus acidocaldarius LAA1] gi|218240804|gb|EED07982.1| Peptidoglycan-binding domain 1 protein [Alicyclobacillus acidocaldarius LAA1] Length = 719 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 10/68 (14%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA----YVESAVKLFQMRHGLDPSGMV 157 L LG++ +V++L+E DL+ GL +A D ++AVK FQ++HG+ G+ Sbjct: 619 LQLGSTGPAVKQLQE------DLNKVLGLHLAVDGVFGPATQAAVKSFQLQHGITVDGIY 672 Query: 158 DSSTLEAM 165 T +AM Sbjct: 673 GPQTAQAM 680 >gi|145597090|ref|YP_001161387.1| cell wall hydrolase/autolysin [Salinispora tropica CNB-440] gi|145306427|gb|ABP57009.1| cell wall hydrolase/autolysin [Salinispora tropica CNB-440] Length = 392 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 36/69 (52%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +RP+ G+ +V +R+ L L P+ S FDA+ E AV+ FQ GL G V Sbjct: 1 MRPIRPGDRGPAVTEIRKVLAGLDLLVPAAPDSDEFDAHTERAVRAFQQSRGLSVDGRVG 60 Query: 159 SSTLEAMNV 167 + T +A++ Sbjct: 61 TETWQALDA 69 >gi|326497859|dbj|BAJ94792.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326518943|dbj|BAJ92632.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326528353|dbj|BAJ93358.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 369 Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 H+G+ + RL++ L G L S S AFDA +E+AV +Q GL+ +G++D Sbjct: 54 CHMGDERDGLARLKDYLSHFGYLSEAPTSSPFSDAFDAELEAAVATYQRNFGLNATGVLD 113 Query: 159 SSTLEAMNVP 168 T+ M P Sbjct: 114 PPTVSQMVAP 123 >gi|332970134|gb|EGK09128.1| zinc D-Ala-D-Ala carboxypeptidase [Desmospora sp. 8437] Length = 243 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 7/77 (9%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRH 149 GW R L G+S V+ L+ R+ PS+ + F E+AVK FQ + Sbjct: 34 GWS----RTLKQGDSGADVRELQIRVAGWAADSPSRTYVAVDGVFGPGTEAAVKRFQRAY 89 Query: 150 GLDPSGMVDSSTLEAMN 166 GL P G+V +T A+N Sbjct: 90 GLSPDGVVGPATQSALN 106 >gi|319639270|ref|ZP_07994021.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria mucosa C102] gi|317399454|gb|EFV80124.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria mucosa C102] Length = 368 Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++V++NI L +NGK+ V VG+ QT + +I +NP W IP+SI Sbjct: 48 QHVVINITQQRLFLYDNGKLSKIYPVAVGKAMTQTTLGEHKIGAKAYNPVWHIPKSI 104 >gi|261365343|ref|ZP_05978226.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria mucosa ATCC 25996] gi|288566283|gb|EFC87843.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria mucosa ATCC 25996] Length = 332 Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V++NIP L +G++ V VG+ QT + +I FNP W IP+S IQK Sbjct: 33 QHVVINIPQQRLFLYTDGQLTKIYPVAVGKAMTQTNLGEHKIGAKAFNPTWHIPKS-IQK 91 Query: 254 D 254 + Sbjct: 92 E 92 >gi|172947|gb|AAA35152.1| Phe-RNA synthetase [Saccharomyces cerevisiae] Length = 503 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 17/90 (18%) Query: 133 AFDAYVESAVKLFQMRHGLDP------SGMVDSSTLEAMNVPVDLRIRQLQVNLMR---- 182 ++ Y E ++++F GL SGM LE+M +P DLR+ ++L R Sbjct: 410 TYNPYTEPSMEIFSWHEGLQKWVEIGNSGMFRPEMLESMGLPKDLRVLGWGLSLERPTMI 469 Query: 183 ------IKKLLEQKMGLRYVLVNIPAASLE 206 I++LL K+ L ++ N PAA L+ Sbjct: 470 KYKVQNIRELLGHKVSLDFIETN-PAARLD 498 >gi|256268905|gb|EEU04254.1| Frs2p [Saccharomyces cerevisiae JAY291] Length = 503 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 17/90 (18%) Query: 133 AFDAYVESAVKLFQMRHGLDP------SGMVDSSTLEAMNVPVDLRIRQLQVNLMR---- 182 ++ Y E ++++F GL SGM LE+M +P DLR+ ++L R Sbjct: 410 TYNPYTEPSMEIFSWHEGLQKWVEIGNSGMFRPEMLESMGLPKDLRVLGWGLSLERPTMI 469 Query: 183 ------IKKLLEQKMGLRYVLVNIPAASLE 206 I++LL K+ L ++ N PAA L+ Sbjct: 470 KYKVQNIRELLGHKVSLDFIETN-PAARLD 498 >gi|254465139|ref|ZP_05078550.1| Putative peptidoglycan binding domain protein [Rhodobacterales bacterium Y4I] gi|206686047|gb|EDZ46529.1| Putative peptidoglycan binding domain protein [Rhodobacterales bacterium Y4I] Length = 3030 Score = 37.7 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 I P+ ++ V L+E L + G +D + AF ++A++ Q R GL PSG V Sbjct: 6 IHPISFLDTGEHVAALQEALGVEGFTVDAEELQHAAFGRSTQTALRELQERVGLTPSGNV 65 Query: 158 DSSTLEAMNVPVDLR 172 D++T A++ +D R Sbjct: 66 DAATARAISERLDRR 80 >gi|190406552|gb|EDV09819.1| phenylalanine-tRNA ligase subunit [Saccharomyces cerevisiae RM11-1a] gi|259146168|emb|CAY79427.1| Frs2p [Saccharomyces cerevisiae EC1118] gi|323333711|gb|EGA75103.1| Frs2p [Saccharomyces cerevisiae AWRI796] gi|323337820|gb|EGA79062.1| Frs2p [Saccharomyces cerevisiae Vin13] gi|323348764|gb|EGA83004.1| Frs2p [Saccharomyces cerevisiae Lalvin QA23] gi|323355239|gb|EGA87065.1| Frs2p [Saccharomyces cerevisiae VL3] Length = 503 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 17/90 (18%) Query: 133 AFDAYVESAVKLFQMRHGLDP------SGMVDSSTLEAMNVPVDLRIRQLQVNLMR---- 182 ++ Y E ++++F GL SGM LE+M +P DLR+ ++L R Sbjct: 410 TYNPYTEPSMEIFSWHEGLQKWVEIGNSGMFRPEMLESMGLPKDLRVLGWGLSLERPTMI 469 Query: 183 ------IKKLLEQKMGLRYVLVNIPAASLE 206 I++LL K+ L ++ N PAA L+ Sbjct: 470 KYKVQNIRELLGHKVSLDFIETN-PAARLD 498 >gi|14318497|ref|NP_116631.1| Frs2p [Saccharomyces cerevisiae S288c] gi|1174509|sp|P15625|SYFA_YEAST RecName: Full=Phenylalanyl-tRNA synthetase alpha chain; AltName: Full=Phenylalanine--tRNA ligase alpha chain; Short=PheRS gi|836732|dbj|BAA09216.1| cytoplasmic phenylalanyl-tRNA synthetase beta chain [Saccharomyces cerevisiae] gi|285811873|tpg|DAA12418.1| TPA: Frs2p [Saccharomyces cerevisiae S288c] Length = 503 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 17/90 (18%) Query: 133 AFDAYVESAVKLFQMRHGLDP------SGMVDSSTLEAMNVPVDLRIRQLQVNLMR---- 182 ++ Y E ++++F GL SGM LE+M +P DLR+ ++L R Sbjct: 410 TYNPYTEPSMEIFSWHEGLQKWVEIGNSGMFRPEMLESMGLPKDLRVLGWGLSLERPTMI 469 Query: 183 ------IKKLLEQKMGLRYVLVNIPAASLE 206 I++LL K+ L ++ N PAA L+ Sbjct: 470 KYKVQNIRELLGHKVSLDFIETN-PAARLD 498 >gi|151940741|gb|EDN59128.1| mitochondrial phenylalanyl-tRNA synthetase alpha subunit [Saccharomyces cerevisiae YJM789] Length = 503 Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 17/90 (18%) Query: 133 AFDAYVESAVKLFQMRHGLDP------SGMVDSSTLEAMNVPVDLRIRQLQVNLMR---- 182 ++ Y E ++++F GL SGM LE+M +P DLR+ ++L R Sbjct: 410 TYNPYTEPSMEIFSWHEGLQKWVEIGNSGMFRPEMLESMGLPKDLRVLGWGLSLERPTMI 469 Query: 183 ------IKKLLEQKMGLRYVLVNIPAASLE 206 I++LL K+ L ++ N PAA L+ Sbjct: 470 KYKVQNIRELLGHKVSLDFIETN-PAARLD 498 >gi|149181183|ref|ZP_01859682.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus sp. SG-1] gi|148851082|gb|EDL65233.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus sp. SG-1] Length = 347 Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 +RGG LP L G+ V+ ++ +L+ +G P G F E AV FQ ++ Sbjct: 185 ARGGSLSLP---LGEGDQGALVREIQTKLVKAGFSLPRYGADGIFGQETEMAVMRFQRKY 241 Query: 150 GLDPSGMVDSSTLEAMN 166 GL G+V TL +N Sbjct: 242 GLRVDGLVGMQTLGKLN 258 >gi|261380022|ref|ZP_05984595.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria subflava NJ9703] gi|284797229|gb|EFC52576.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria subflava NJ9703] Length = 368 Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 31/57 (54%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++V++NI L +NGK+ V VG+ QT + +I +NP W IP+SI Sbjct: 48 QHVVINITQQRLFLYDNGKLSKIYPVAVGKAMTQTNLGEHKIGAKAYNPVWHIPKSI 104 >gi|17228662|ref|NP_485210.1| lysin [Nostoc sp. PCC 7120] gi|17130513|dbj|BAB73124.1| lysin [Nostoc sp. PCC 7120] Length = 242 Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V L+E ++I DP + + F E+AVK FQ R + P G+V+ +T Sbjct: 7 LRKGSKGSDVSELQE-ILIKLKFDPGR-IDGDFGNKTEAAVKQFQQRQSITPDGVVEINT 64 Query: 162 LEAMNVPVDLRI 173 A+N + +I Sbjct: 65 RNALNKAIQRQI 76 >gi|269213836|ref|ZP_06158207.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria cinerea ATCC 14685] gi|269145157|gb|EEZ71575.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria cinerea ATCC 14685] Length = 338 Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +G + V VGR QT + +I +NP W IP+S IQK Sbjct: 47 QHVFINIPQQRLFLYTDGNLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWHIPKS-IQK 105 Query: 254 D 254 + Sbjct: 106 E 106 >gi|34497388|ref|NP_901603.1| hypothetical protein CV_1933 [Chromobacterium violaceum ATCC 12472] gi|34103244|gb|AAQ59607.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 301 Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R++++N+P A L ++GK+ V VG++ QTP I I P W +P+S IQ+ Sbjct: 35 RHLVLNLPQARLFLYQDGKLARIFPVAVGKMLTQTPTGSFDITGIYRAPSWHVPKS-IQE 93 Query: 254 DM 255 +M Sbjct: 94 EM 95 >gi|326502188|dbj|BAJ98922.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 365 Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDL-DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 H G+ + RL++ L G L P + FDA +E+A++ +Q GL+ +G +D++ Sbjct: 55 CHFGDERQGLARLKDYLSRFGYLPAPPAKFNDMFDADMETAIRTYQHNFGLEATGQLDAA 114 Query: 161 TLEAMNVP 168 T+ M P Sbjct: 115 TVAKMMSP 122 >gi|326488589|dbj|BAJ93963.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326534164|dbj|BAJ89432.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 365 Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDL-DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 H G+ + RL++ L G L P + FDA +E+A++ +Q GL+ +G +D++ Sbjct: 55 CHFGDERQGLARLKDYLSRFGYLPAPPAKFNDMFDADMETAIRTYQHNFGLEATGQLDAA 114 Query: 161 TLEAMNVP 168 T+ M P Sbjct: 115 TVAKMMSP 122 >gi|322384552|ref|ZP_08058232.1| spore cortex-lytic enzyme-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150607|gb|EFX44084.1| spore cortex-lytic enzyme-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 216 Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L++G S V L+ERL G KG++ + + AV+ FQ +GL +G DS+T Sbjct: 32 LNIGTQSEHVLNLQERLSSLGYFK--KGITGYYGKITKEAVRDFQKAYGLSVTGSADSAT 89 Query: 162 LEAMN 166 L +N Sbjct: 90 LAKLN 94 >gi|167465177|ref|ZP_02330266.1| cell wall hydrolase, SleB [Paenibacillus larvae subsp. larvae BRL-230010] Length = 216 Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L++G S V L+ERL G KG++ + + AV+ FQ +GL +G DS+T Sbjct: 32 LNIGTQSEHVLNLQERLSSLGYFK--KGITGYYGKITKEAVRDFQKAYGLSVTGSADSAT 89 Query: 162 LEAMN 166 L +N Sbjct: 90 LAKLN 94 >gi|23100366|ref|NP_693833.1| hypothetical protein OB2911 [Oceanobacillus iheyensis HTE831] gi|22778599|dbj|BAC14867.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 1115 Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 65/162 (40%), Gaps = 27/162 (16%) Query: 33 ASVLDEIINESYHSIVNDRFDNF------------LARVDMGIDSDIPIISKETIAQTEK 80 ++D E S+ N F N L R+ G + + T Q K Sbjct: 583 TGIVDHTTEEKISSVYNSPFQNGKRHDGTVEIKEKLNRIGFGYITVSTLYGSFTETQVRK 642 Query: 81 AIAFYQDILSRGGWPELPI--------RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 + Y +L G E+ I PL LGNS + L+E L G G+++ Sbjct: 643 FQSHY-GLLENGIADEVTIAKLDNIFNHPLQLGNSHPDIITLKENLNHLG----YDGIAI 697 Query: 133 A--FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 + F + E+ +K FQ +GL SG+ D TL A+ V+ R Sbjct: 698 SDYFGNWTETRLKQFQEDNGLPVSGIADEITLAAIEEAVENR 739 >gi|17230237|ref|NP_486785.1| hypothetical protein alr2745 [Nostoc sp. PCC 7120] gi|17131838|dbj|BAB74444.1| alr2745 [Nostoc sp. PCC 7120] Length = 305 Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 GWP L +G + V +L++RL G L S + F E A+K Q R+G++ Sbjct: 231 GWPIL-----RVGMKNSEVTKLQQRLSQLGFLKGS--VDGYFGVQTEEALKAAQRRYGIE 283 Query: 153 PSGMVDSSTLEAM 165 P G+ +T EA+ Sbjct: 284 PDGVAGGATWEAL 296 >gi|238061899|ref|ZP_04606608.1| cell wall hydrolase/autolysin [Micromonospora sp. ATCC 39149] gi|237883710|gb|EEP72538.1| cell wall hydrolase/autolysin [Micromonospora sp. ATCC 39149] Length = 388 Score = 37.0 bits (84), Expect = 5.7, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 31/69 (44%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +RP+ G+ +V +R L L P + FD E AV+ FQ GL G V Sbjct: 1 MRPIRTGDRGPAVSEIRAVLTGLDLLTPGSSAADEFDTETERAVRAFQQSRGLSVDGRVG 60 Query: 159 SSTLEAMNV 167 + T A++ Sbjct: 61 AETWRALDA 69 >gi|241759332|ref|ZP_04757438.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria flavescens SK114] gi|241320468|gb|EER56765.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria flavescens SK114] Length = 353 Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V++NI L +NGK+ V VG+ QT + +I +NP W IP+S IQK Sbjct: 33 QHVVINITQQRLFLYDNGKLSKIYPVAVGKAMTQTNLGEHKIGAKAYNPVWHIPKS-IQK 91 Query: 254 D 254 + Sbjct: 92 E 92 >gi|225076549|ref|ZP_03719748.1| hypothetical protein NEIFLAOT_01597 [Neisseria flavescens NRL30031/H210] gi|224952120|gb|EEG33329.1| hypothetical protein NEIFLAOT_01597 [Neisseria flavescens NRL30031/H210] Length = 353 Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V++NI L +NGK+ V VG+ QT + +I +NP W IP+S IQK Sbjct: 33 QHVVINITQQRLFLYDNGKLSKIYPVAVGKAMTQTNLGEHKIGAKAYNPVWHIPKS-IQK 91 Query: 254 D 254 + Sbjct: 92 E 92 >gi|297804516|ref|XP_002870142.1| hypothetical protein ARALYDRAFT_493212 [Arabidopsis lyrata subsp. lyrata] gi|297315978|gb|EFH46401.1| hypothetical protein ARALYDRAFT_493212 [Arabidopsis lyrata subsp. lyrata] Length = 362 Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 28/44 (63%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 D S+ S FD +ESA+ L+Q GL +G +D+ST+ M++P Sbjct: 84 DGSESFSDVFDGPLESAISLYQENLGLPITGRLDTSTVSLMSLP 127 >gi|56963694|ref|YP_175425.1| peptidoglycan binding domain-containing protein [Bacillus clausii KSM-K16] gi|56909937|dbj|BAD64464.1| peptidoglycan-binding domain-containing protein [Bacillus clausii KSM-K16] Length = 355 Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 5/88 (5%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 P+H G S V++L++ L+ SG L+ + S +D+ V +AVK FQ + L G+ Sbjct: 59 PIHEGEKSERVEKLQDYLVESGYLE-DQDRSHTYDSKVVAAVKQFQQDNNLLVDGIAGVQ 117 Query: 161 TLEAMNVPVD----LRIRQLQVNLMRIK 184 TL +M V + L + LQ L +++ Sbjct: 118 TLGSMAVLQEGSDGLLVNMLQKKLAQLQ 145 >gi|218659271|ref|ZP_03515201.1| hypothetical protein RetlI_06191 [Rhizobium etli IE4771] Length = 211 Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 3/88 (3%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 V+ FQ GL G++ +T+ AM +I +L+V M + L + +G RYV++N Sbjct: 125 VEDFQKERGLKADGVIGQATVRAMTGGDTNASKIDKLEV-AMEQARWLPEDLGSRYVMIN 183 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQ 227 PA +GK L V+VG + Q Sbjct: 184 QPAYMAYYHNDGKEQLSMRVVVGGKNNQ 211 >gi|260424725|ref|ZP_05778983.1| endopeptidase, cell wall lytic activity [Dialister invisus DSM 15470] gi|260402963|gb|EEW96510.1| endopeptidase, cell wall lytic activity [Dialister invisus DSM 15470] Length = 246 Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 LG+S +V+ L+ RL +G L + G F+ SAVK FQ +H LD G+V T + Sbjct: 28 LGDSGDAVKDLQRRLTQAGCLVRADGR---FNETTVSAVKKFQKKHNLDVDGVVGPVTYK 84 Query: 164 AMN 166 A+ Sbjct: 85 ALT 87 Searching..................................................done Results from round 2 >gi|254780350|ref|YP_003064763.1| hypothetical protein CLIBASIA_01175 [Candidatus Liberibacter asiaticus str. psy62] gi|254040027|gb|ACT56823.1| hypothetical protein CLIBASIA_01175 [Candidatus Liberibacter asiaticus str. psy62] Length = 431 Score = 601 bits (1550), Expect = e-170, Method: Composition-based stats. Identities = 431/431 (100%), Positives = 431/431 (100%) Query: 1 MVGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD 60 MVGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD Sbjct: 1 MVGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD 60 Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII Sbjct: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL Sbjct: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF Sbjct: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ Sbjct: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT Sbjct: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII Sbjct: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 Query: 421 PLPEDHPIDSD 431 PLPEDHPIDSD Sbjct: 421 PLPEDHPIDSD 431 >gi|315122226|ref|YP_004062715.1| hypothetical protein CKC_02390 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495628|gb|ADR52227.1| hypothetical protein CKC_02390 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 431 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 296/430 (68%), Positives = 360/430 (83%) Query: 1 MVGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD 60 M+ YLKI +++ FF YLIL MGL LV+ P+ A +LDEI ESYH+ V++RFD L+R D Sbjct: 1 MISYLKIINVVHRFFTYLILLMGLFLVKYPVRADILDEITKESYHANVDNRFDTLLSRPD 60 Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 +GIDS I+S ETI TEKAI FYQDI+SRGGW +L RPL LG+SSV VQ+LRERLII Sbjct: 61 IGIDSYAAIVSNETITNTEKAIVFYQDIVSRGGWQQLANRPLRLGDSSVLVQKLRERLII 120 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 SGDLD SKG S FD+YVESAVK FQ RHGL P G+VD +TL+A+NVP DLR+RQL+VNL Sbjct: 121 SGDLDSSKGFSSVFDSYVESAVKFFQARHGLFPDGVVDIATLKAINVPADLRLRQLRVNL 180 Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 +RI LL++KMG RYVL+NIP+AS+EAVEN KV LRS IVGR+DRQTPILHS+I+RIM Sbjct: 181 LRISNLLKRKMGSRYVLINIPSASMEAVENDKVALRSVAIVGRIDRQTPILHSKIDRIML 240 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NPYWVIPRSII+KD++ L+R+ P+YLK++NIH+I++KGKEV E+VDWNS + P+FIFRQ Sbjct: 241 NPYWVIPRSIIKKDLVELVRESPEYLKESNIHIINDKGKEVLPEDVDWNSADLPHFIFRQ 300 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 D GK NAMASTKIEFYS+NN+YMHDTPEP LF+ RFETSGCVRV+NIIDL+VWLLK+ Sbjct: 301 DSGKNNAMASTKIEFYSQNNSYMHDTPEPFLFSQTARFETSGCVRVKNIIDLNVWLLKNM 360 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 P WSR+ IEEV+KTRKTTPVKL EV +HFVYISAWS KD ++QFRDD+YGLDNV++ I Sbjct: 361 PGWSRHDIEEVIKTRKTTPVKLDKEVLIHFVYISAWSTKDLVVQFRDDVYGLDNVYIDSI 420 Query: 421 PLPEDHPIDS 430 PLP +P++S Sbjct: 421 PLPGKYPVNS 430 >gi|150396039|ref|YP_001326506.1| peptidoglycan binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150027554|gb|ABR59671.1| Peptidoglycan-binding domain 1 protein [Sinorhizobium medicae WSM419] Length = 443 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 205/429 (47%), Positives = 279/429 (65%), Gaps = 9/429 (2%) Query: 11 LYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPII 70 F + L+EIIN +D+FD +R + S+ P+ Sbjct: 12 RRAFLRSAATFGAAAWAGAASAQDALNEIINSPRRGSWDDQFDAKASRTATAVLSNTPVF 71 Query: 71 SKETIAQTEKAIAFYQDILSRGGWPEL---PIRPLHLGNSSVSVQRLRERLIISGDLDPS 127 ETIA ++AI YQ I + GGWP + + L LG + +VQ+LR+RL+ISGDL S Sbjct: 72 GPETIALLQQAILDYQQIAAAGGWPMVNPASTQRLELGVNDPAVQQLRQRLMISGDLPQS 131 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 G+S +FD+YV+ AVK FQ RHGL G++ +L+A+NV R+ QL+ NL+R++ + Sbjct: 132 AGISPSFDSYVDGAVKRFQARHGLPADGVIGEYSLKALNVDASTRLAQLETNLVRLQS-M 190 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 +G RYV+VNIPAA +EAVENG+V LR T IVG++DRQ+PIL+S+I ++ NPYW P Sbjct: 191 SGDLGRRYVMVNIPAAYIEAVENGRVALRHTAIVGKIDRQSPILNSKIYEVILNPYWTAP 250 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 RSIIQKD+M L+R+DP YL+ N I ++D G EV E +DW + + PN +FRQDPGKINA Sbjct: 251 RSIIQKDIMPLMRKDPTYLERNAIRLLDGNGNEVSPETIDWQAEKAPNLMFRQDPGKINA 310 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 M+STKI F++ + YMHDTP+ LFN ++RFE+SGCVRV+N+ DL WLLK+TP WSR Sbjct: 311 MSSTKINFHNEHAVYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLSTWLLKETPGWSRQQ 370 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP---- 423 IE +K+ TP+KLA EVPV+F YI+AWS KD ++QFRDDIY D + Sbjct: 371 IEGTIKSGVNTPIKLAEEVPVYFTYITAWSAKDRVVQFRDDIYQRDGAAELALQTTTGIE 430 Query: 424 -EDHPIDSD 431 PID+D Sbjct: 431 QSAGPIDAD 439 >gi|15964960|ref|NP_385313.1| hypothetical protein SMc01769 [Sinorhizobium meliloti 1021] gi|307301031|ref|ZP_07580800.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] gi|307317765|ref|ZP_07597203.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|15074139|emb|CAC45786.1| Hypothetical protein SMc01769 [Sinorhizobium meliloti 1021] gi|306896527|gb|EFN27275.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306903986|gb|EFN34572.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] Length = 443 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 206/429 (48%), Positives = 278/429 (64%), Gaps = 9/429 (2%) Query: 11 LYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPII 70 F + L+EIIN +D+FD +R + S+ P+ Sbjct: 12 RRAFLRSAATFGAAAWAGAAGAQDALNEIINSPRRGSWDDQFDAKASRTATAVLSNTPVF 71 Query: 71 SKETIAQTEKAIAFYQDILSRGGWPEL---PIRPLHLGNSSVSVQRLRERLIISGDLDPS 127 ETIA ++AI YQ I S GGWP + + L +G + SVQ+LR+RL+ISGDL S Sbjct: 72 GPETIAHLQQAIFDYQQIASAGGWPMVTPASTQRLEIGVTDPSVQQLRQRLMISGDLPQS 131 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 G+S +FD+YV+ AVK FQ RHGL G++ +L+AMNV R+ QL+ NL+R++ + Sbjct: 132 AGISSSFDSYVDGAVKRFQARHGLPADGVIGEYSLKAMNVDASTRLAQLETNLVRLQS-M 190 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 +G RYV+VNIPAA +EAVENG+V LR T IVG++DRQ+PIL+S+I ++ NPYW P Sbjct: 191 SGDLGRRYVMVNIPAAYIEAVENGRVALRHTAIVGKIDRQSPILNSKIYEVILNPYWTAP 250 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 RSIIQKD+M L+R+DP YL N I ++D G EV E +DW + + PN +FRQDPGKINA Sbjct: 251 RSIIQKDIMPLMRKDPTYLARNAIRLLDGNGNEVSPETIDWQAEKAPNLMFRQDPGKINA 310 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 M+STKI F++ + YMHDTP+ LFN ++RFE+SGCVRV+N+ DL WLLK+TP W+R Sbjct: 311 MSSTKINFHNEHAVYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLSTWLLKETPGWARQQ 370 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP---- 423 IE +K+ TP+KLA EVPV+F YI+AWS KD ++QFRDDIY D + Sbjct: 371 IEATIKSGVNTPIKLAEEVPVYFTYITAWSAKDRVVQFRDDIYQRDGAAELALQTTTGIE 430 Query: 424 -EDHPIDSD 431 PID+D Sbjct: 431 QSAGPIDAD 439 >gi|227821529|ref|YP_002825499.1| putative amidase [Sinorhizobium fredii NGR234] gi|227340528|gb|ACP24746.1| putative amidase [Sinorhizobium fredii NGR234] Length = 442 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 203/428 (47%), Positives = 279/428 (65%), Gaps = 8/428 (1%) Query: 11 LYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPII 70 F + L E+IN +D+FD +R + S+ P+ Sbjct: 12 RRAFLRSAATFGAAAWAGAASAQDALGELINSPRRGSWDDQFDAKASRTATAVLSNTPVF 71 Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELP--IRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 +TI ++AI YQ I++ GGWP++P L LG + SVQ+LR+RL++SGDL S Sbjct: 72 GPQTIGHVQQAIFDYQQIVAAGGWPQVPQTGARLELGVTDPSVQQLRQRLMVSGDLPRSA 131 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 G+S +FD+YV+ AVK FQ RHGL G++ + +A+NV R+ QL+ NL+R++ + Sbjct: 132 GISSSFDSYVDGAVKRFQARHGLPADGVIGEYSFKALNVDAATRLAQLETNLVRLQS-MS 190 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 +G RYV+VNIPAA +EAVENG+V LR T IVG++DRQ+PIL+S+I ++ NPYW PR Sbjct: 191 GDLGRRYVMVNIPAAYIEAVENGRVVLRHTAIVGKIDRQSPILNSKIYEVILNPYWTAPR 250 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SI+QKD+M L+R+DP YL+ N I ++D G EV E VDWN+ + PN +FRQDPGKINAM Sbjct: 251 SIVQKDIMPLMRKDPTYLERNAIRLLDGSGNEVSPETVDWNAEKAPNLMFRQDPGKINAM 310 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 +STKI F++ ++ YMHDTP+ LFN ++RFE+SGCVRV+N+ DL WLLK+TP WSR I Sbjct: 311 SSTKINFHNEHSVYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLSTWLLKETPGWSRQQI 370 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP----- 423 E +KT TP+KLA EVPV+F YI+AWS KD ++QFRDDIY D + Sbjct: 371 EATIKTGVNTPIKLAEEVPVYFTYITAWSAKDRVVQFRDDIYQRDGAAELALQTTTGIEQ 430 Query: 424 EDHPIDSD 431 ID+D Sbjct: 431 SPGAIDAD 438 >gi|110633486|ref|YP_673694.1| twin-arginine translocation pathway signal [Mesorhizobium sp. BNC1] gi|110284470|gb|ABG62529.1| Twin-arginine translocation pathway signal [Chelativorans sp. BNC1] Length = 419 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 182/385 (47%), Positives = 260/385 (67%), Gaps = 1/385 (0%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG 92 + D IIN + +D+FD ++ + S +P+++ +T E+AIA Y +I++ G Sbjct: 27 QNAFDAIINAPRRGVWDDQFDAQISSGRDRVISYLPVLNPQTAVHVEQAIAGYSNIVASG 86 Query: 93 GWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 GWP++P + L LG V+ LR RL++SGDL P G+S AFD+YV+ A+K FQ+RHGL Sbjct: 87 GWPQVPATKKLQLGVIDPDVEALRRRLMVSGDLSPRAGMSPAFDSYVDQALKRFQVRHGL 146 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 G+ T A+NV +R+ QLQ NL R++++ +++G R+V+VNIPAA +EAVENG Sbjct: 147 PADGVTGRYTFSALNVSAPVRLGQLQTNLGRLREMTSKQLGNRFVMVNIPAAQIEAVENG 206 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 +V R T +VG++DRQTP+L S+IN I+ NPYW P SI++KD++ L+R+DP YL DNNI Sbjct: 207 RVVSRHTAVVGKIDRQTPVLSSKINEIILNPYWNAPVSIVRKDIIPLMRKDPNYLTDNNI 266 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 MI G EV +DW++ E + FRQDPGKINAMAS KI F +++ YMHDTP+ L Sbjct: 267 RMIAPDGSEVDPLTIDWSTEEAAKYRFRQDPGKINAMASVKINFPNQHAVYMHDTPQQSL 326 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 F + RF +SGCVRV+N+ DL WLL+DT W R IE +++++ + +A VPV+FV Sbjct: 327 FRDQERFHSSGCVRVQNVRDLVAWLLRDTQGWDRRRIETTIQSQEDIHINVADPVPVYFV 386 Query: 392 YISAWSPKDSIIQFRDDIYGLDNVH 416 Y+SAWS D ++ FRDDIYG D Sbjct: 387 YVSAWSTGDGVVHFRDDIYGFDGAE 411 >gi|209548779|ref|YP_002280696.1| peptidoglycan-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534535|gb|ACI54470.1| Peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 433 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 202/404 (50%), Positives = 279/404 (69%), Gaps = 6/404 (1%) Query: 15 FVYLILPMGLSLVEKPIHA-SVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPIISK 72 F+ +G+S + P A S +D +IN +D+FD A R + S+ PI+ Sbjct: 15 FLASAATVGVSAIAAPAFAQSAIDTLINAPRRGNWDDQFDAKAASRTASAVVSNTPILGP 74 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 +++A ++A+ YQ I + GGWPE+ L LG S +VQ LR+RL I+GDL G+ Sbjct: 75 QSLASAQQAVMQYQQIAAAGGWPEVNPGDQKLQLGVSHPAVQALRQRLAITGDLPREAGM 134 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 S AFD+YV+ AVK FQ RHGL G++ TL+AMN+P D+R++QL N++R++ + Sbjct: 135 SSAFDSYVDGAVKRFQARHGLPSDGVLGEFTLKAMNIPADVRLQQLNTNIIRLQTF-PED 193 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +G R+V+VNIPAA +EAVE+G V R T +VGR+ R T +++S+I ++ NPYW PRSI Sbjct: 194 LGRRHVMVNIPAAYVEAVEDGTVATRHTAVVGRLSRPTHLVNSKIYEVILNPYWTSPRSI 253 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 ++KD+M L+R+DP YL+ N I +ID KG EV E +DWN E PN +FRQDPGK NAMAS Sbjct: 254 VEKDIMPLMRKDPTYLEKNAIRLIDGKGNEVAPETIDWNG-EAPNLMFRQDPGKTNAMAS 312 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 TKI FY++N YMHDTP+ LFN ++RFE+SGCVRV+N+ DL WLL++TP W+R +E+ Sbjct: 313 TKINFYNKNGEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLSNWLLRETPGWNRQQMEQ 372 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 V+ + TPVKLATEVPV+FVYISAW D I+QFRDDIY +D Sbjct: 373 VIASGVNTPVKLATEVPVYFVYISAWGMPDGIVQFRDDIYQMDG 416 >gi|13476933|ref|NP_108502.1| hypothetical protein mlr8397 [Mesorhizobium loti MAFF303099] gi|14027695|dbj|BAB54288.1| mlr8397 [Mesorhizobium loti MAFF303099] Length = 422 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 193/405 (47%), Positives = 269/405 (66%), Gaps = 4/405 (0%) Query: 13 CFFVYLILPMGLSLVEKPIHAS-VLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIIS 71 FF+ + ++V A V+ +I+ S +D+FD A + S +PI S Sbjct: 11 RFFLSGASLLAAAMVAGRASAQDVIGDILKSSARGNWDDQFDAR-ASEGGKVASTLPIFS 69 Query: 72 KETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 +T+A TE+A+A YQ+I+ +GGW E+P + L LG V LR+RL++SGDL S G+ Sbjct: 70 TQTVAFTEQAVAQYQNIVGQGGWVEVPATKKLELGVDDPDVVPLRKRLMVSGDLSQSAGI 129 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 S AFD+YV+SAVK FQ+RHGL G + T AMNV +R+ QLQ NL R+K+ Sbjct: 130 STAFDSYVDSAVKRFQLRHGLPADGSMGKYTYAAMNVSAQIRLGQLQTNLQRLKE-KAGT 188 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +G RYVLV+IPAA +EAVEN +V LR T IVG++DRQTPI++S+IN I+ NPYW P SI Sbjct: 189 LGSRYVLVDIPAAQIEAVENDRVVLRHTAIVGKIDRQTPIVNSKINEIIVNPYWNAPVSI 248 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 ++KD++ L+R+DP YLK+++I + G EV VDW++ + + FRQDPG NAMAS Sbjct: 249 VRKDIIPLMRKDPNYLKNSHIRLFAPDGSEVDPMNVDWSTDDAAKYRFRQDPGSENAMAS 308 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 KI F S + YMHDTP+ LF ++RF++SGCVRV+N+ DL W+L+DTP W R H E Sbjct: 309 VKINFPSPDGVYMHDTPQQSLFGKMMRFDSSGCVRVQNVRDLVTWILRDTPGWDRQHFEA 368 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 +KT + TP+++ VPVHF+Y+SAWS ++QFRDD+Y LD Sbjct: 369 AIKTGQNTPIQVTNPVPVHFLYLSAWSTGPGVVQFRDDVYALDGA 413 >gi|114704835|ref|ZP_01437743.1| hypothetical protein FP2506_07861 [Fulvimarina pelagi HTCC2506] gi|114539620|gb|EAU42740.1| hypothetical protein FP2506_07861 [Fulvimarina pelagi HTCC2506] Length = 444 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 183/413 (44%), Positives = 261/413 (63%), Gaps = 2/413 (0%) Query: 5 LKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGID 64 + F +GL + S LD ++ +D+FD + + Sbjct: 7 IPGRTTRRAFLSGTTAALGLGMTGFASAQSGLDGLLGARGRGNWDDQFDTRGSSARE-VS 65 Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGD 123 S PI S++T+ T+ A+ Y I+++GGWP +P R L LG + V+ LR+RL ISGD Sbjct: 66 SLNPIFSQQTLYSTQAAMQTYNQIVAQGGWPTVPARYVLKLGEVTPDVEVLRQRLAISGD 125 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 L P S AFD YVE+AVK FQ RHGL G+V +A+NVP DLR+ QLQ N R+ Sbjct: 126 LSPQASRSPAFDTYVEAAVKRFQARHGLPADGVVGEHAYKALNVPADLRLFQLQTNAARL 185 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L++++ RYV+VNIPAA++EAVENG++ R T +VG+VDRQTPIL S+I + NPY Sbjct: 186 QNQLQEQLPYRYVMVNIPAAAIEAVENGQIVQRHTAVVGKVDRQTPILTSKITNLNLNPY 245 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P SI++KD++ L+RQDP YL+ N IH+ + G+EV + +DW+S E +++FRQ+PG Sbjct: 246 WHAPASIVRKDIIPLVRQDPTYLQRNGIHIFNGNGQEVPPQSIDWSSDEAVSYLFRQNPG 305 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 +AMAS KI F + + YMHDTP+ LF+ ++RFE+SGCVRV+N+ DL VWL +D P W Sbjct: 306 PNSAMASVKINFPNEHAVYMHDTPQKGLFSELMRFESSGCVRVQNVRDLIVWLARDEPNW 365 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 +R IE V+ R + LA VPV+F Y++ W+ +++QFRDDIY D Sbjct: 366 NRQAIERVISARSREDIDLANPVPVYFTYVTGWATDPNVVQFRDDIYHRDGAE 418 >gi|153009858|ref|YP_001371073.1| peptidoglycan-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151561746|gb|ABS15244.1| Peptidoglycan-binding domain 1 protein [Ochrobactrum anthropi ATCC 49188] Length = 433 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 193/402 (48%), Positives = 267/402 (66%), Gaps = 3/402 (0%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 + ++V L ++I+ S D+FD A + ++ P++S +T+ Sbjct: 24 TAGLSVAASAMVSSAYAQQALTDVISSSRRGNWADQFDAR-ATGGQRVATNQPVLSPQTV 82 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + AIA Y DI RGGWP +P L +G + SVQ LR+RL+ISGDL GLS +F Sbjct: 83 GNLQTAIAQYTDIAGRGGWPSVPGNTKLQIGVTDPSVQALRKRLMISGDLPQEAGLSSSF 142 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GL 193 D YV++AVK FQ RHGL G++ T AMNV + R+ QLQ NL R+ L Q + Sbjct: 143 DTYVDAAVKRFQSRHGLPADGVMGQFTYAAMNVDANTRLGQLQTNLQRLSPLANQGLQEQ 202 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R+V+VNIPAA +EAVE G V R T +VG++DRQTPIL+S+I+ ++ NPYW P+SIIQK Sbjct: 203 RFVMVNIPAARIEAVEGGSVMQRHTAVVGKIDRQTPILNSKIHEVILNPYWTAPKSIIQK 262 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 D++ L+R+DPQYL N I + D+ G+EV E +DWN+ + +FRQDPGKINAM+STKI Sbjct: 263 DIIPLMRKDPQYLAKNKIRLYDQSGQEVAPESIDWNTDDAVKLMFRQDPGKINAMSSTKI 322 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 F+++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R +IE +K Sbjct: 323 NFHNQYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTAGWDRQNIESTIK 382 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + TP++LA VP+HFVYI+AWS D ++QFRDDIY +D Sbjct: 383 SGTNTPIQLADPVPLHFVYITAWSTGDGVVQFRDDIYKMDGA 424 >gi|90419407|ref|ZP_01227317.1| putative peptidoglycan-binding protein [Aurantimonas manganoxydans SI85-9A1] gi|90336344|gb|EAS50085.1| putative peptidoglycan-binding protein [Aurantimonas manganoxydans SI85-9A1] Length = 447 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 188/407 (46%), Positives = 259/407 (63%), Gaps = 2/407 (0%) Query: 11 LYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPII 70 F + L + L E++ +D+FD + V + S+ P+ Sbjct: 15 RRRFVLGTAAASAAMLPGAAFAQNALGELLQAPTRGNWDDQFDTRGSNVR-QVASNSPVF 73 Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKG 129 S+ TI ++AI Y I+ GGWP +P L +G S +V LR+RL I+GDL + G Sbjct: 74 SENTIYSLQEAINSYSAIVQGGGWPMVPEGETLKIGVQSRTVPVLRQRLAIAGDLGNNAG 133 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 S AFD YV++AVK FQ RHGL G+V T +AMNV DLR+ QLQ NL R+++ L Sbjct: 134 GSPAFDTYVDAAVKRFQARHGLPADGVVSGHTYKAMNVGADLRLGQLQTNLQRLREKLAT 193 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 +G RYV+VNIPAAS+EAVENG+V R T +VG+VDRQTPIL SRI + NPYW P S Sbjct: 194 DLGQRYVVVNIPAASIEAVENGRVVQRHTAVVGKVDRQTPILDSRITNLNLNPYWHAPVS 253 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I++KD++ L+++DP YL+ N I + D G+E+ + +DWN+ E ++FRQDPGKINAMA Sbjct: 254 IVRKDIIPLMQKDPTYLERNAIRIFDGNGQEIPPQTIDWNTEEAVKYLFRQDPGKINAMA 313 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 S KI F + + YMHDTP+ LF+ ++RFE+SGCVRV+N+ DL VWL +D P W R IE Sbjct: 314 SVKINFPNPHAVYMHDTPQQSLFSELMRFESSGCVRVQNVRDLIVWLARDVPGWDRQRIE 373 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 +V+ R+ + L VPVHF Y++AW+ +++QFRDDIY D V Sbjct: 374 QVIAARERQDIDLLNPVPVHFTYVTAWATDPTVVQFRDDIYHRDGVE 420 >gi|239831589|ref|ZP_04679918.1| peptidoglycan binding domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239823856|gb|EEQ95424.1| peptidoglycan binding domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 438 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 194/407 (47%), Positives = 269/407 (66%), Gaps = 3/407 (0%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 + ++V VL ++I +D+FD A + ++ P++S +T+ Sbjct: 29 TAGLSVAASAMVSSAYAQQVLTDVIAAPRRGNWDDQFDAR-ATGGQRVATNQPVLSPQTV 87 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + AIA Y DI RGGWP +P L +G + +VQ LR+RL+ISGDL GLS +F Sbjct: 88 GNLQTAIAQYTDIAGRGGWPSVPGNAKLQIGVTDPAVQALRKRLMISGDLPQEAGLSSSF 147 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GL 193 D YV++AVK FQ RHGL G++ T AMNV + R+ QLQ NL R+ L +Q M Sbjct: 148 DTYVDAAVKRFQSRHGLPADGVMGQFTYAAMNVDANTRLGQLQTNLQRLSPLADQGMQEQ 207 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R+V+VNIPAA +EAVE G V R T +VG++DRQTPIL+S+I+ ++ NPYW P+SIIQK Sbjct: 208 RFVMVNIPAARIEAVEGGSVVQRHTAVVGKIDRQTPILNSKIHEVILNPYWTAPKSIIQK 267 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 D++ L+R+DPQYL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI Sbjct: 268 DIIPLMRKDPQYLAKNKIRLYDQSGQEVAPETVDWNTDDAVKLMFRQDPGKINAMSSTKI 327 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 F++++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R IE +K Sbjct: 328 NFHNQHQVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTAGWDRQTIENTIK 387 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + TP+++A VP+HFVYISAWS D ++QFRDDIY +D + Sbjct: 388 SGTNTPIQVADPVPLHFVYISAWSTGDGVVQFRDDIYKMDGATALAL 434 >gi|222148202|ref|YP_002549159.1| hypothetical protein Avi_1609 [Agrobacterium vitis S4] gi|221735190|gb|ACM36153.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 410 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 194/385 (50%), Positives = 273/385 (70%), Gaps = 2/385 (0%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 + S +DE+IN +D+FD +R + S+ P++S + + AI+ YQ I++ Sbjct: 1 MAQSAVDELINARSRGNWDDQFDAQTSRAVASVTSNSPMLSATNLPNLQLAISAYQQIVA 60 Query: 91 RGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 +GGWP++ P L LG+ VQ+LR+RL+ISGDL G+S +FD YV+ AVK FQ RH Sbjct: 61 QGGWPQVNPSVKLKLGSIDPVVQQLRQRLMISGDLGQEAGMSNSFDTYVDGAVKRFQARH 120 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL G + TL+AMN+ D+R+ QL NL+R++ + +G RYV+VNIP+ S+EAVE Sbjct: 121 GLPTDGALGEYTLKAMNISADVRLNQLNTNLVRLQA-MSGDLGNRYVMVNIPSMSIEAVE 179 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 N +V LR+ +VGR+DR T ++S+I ++ NPYW PRSI++KD++ L+R+DP YL N Sbjct: 180 NDRVALRTNAVVGRIDRPTHSINSKIYEVILNPYWTAPRSIVEKDIVPLMRKDPTYLTRN 239 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 NI + D KG+EV E VDWN+P+ PN +FRQDPGKINAMASTKI F++ NN Y+HDTP+ Sbjct: 240 NIRLFDGKGQEVAPETVDWNAPKAPNLMFRQDPGKINAMASTKINFHNPNNEYLHDTPQQ 299 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LFN ++RFE+SGC+RV+N+ DL WLL+DTP W+R IE V+ TR+ +KL+ EVPV+ Sbjct: 300 GLFNKLMRFESSGCMRVQNVRDLITWLLRDTPGWNRQEIERVISTRQNNVIKLSQEVPVY 359 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDN 414 VYI+AWS KD+++QFRDDIY D Sbjct: 360 IVYITAWSAKDNVVQFRDDIYKRDG 384 >gi|241204000|ref|YP_002975096.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857890|gb|ACS55557.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 433 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 202/407 (49%), Positives = 274/407 (67%), Gaps = 5/407 (1%) Query: 11 LYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPI 69 F +L S LD +IN +D+FD A R + S+ PI Sbjct: 12 RRAFLASAATVGASALAAPAFAQSALDTLINAPRRGNWDDQFDAKAASRTATAMVSNTPI 71 Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPS 127 + +++A ++AI YQ I + GGWPE+ L LG SS +VQ LR+RL I+GDL Sbjct: 72 LGPQSVASAQQAIMQYQQIAAAGGWPEVNPGDQRLQLGVSSPAVQALRQRLAITGDLPRE 131 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD+YV+ AVK FQ RHGL G++ TL+AMN+P D+R++QL N++R++ Sbjct: 132 AGLSNAFDSYVDGAVKRFQARHGLPADGVLGEFTLKAMNIPADVRLQQLNTNVVRLQTF- 190 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + +G R+++VNIPAA +EAVE+G V R T +VGR+ R T +++S+I ++ NPYW P Sbjct: 191 PEDLGRRHLMVNIPAAYVEAVEDGSVATRHTAVVGRLSRPTHLVNSKIYEVILNPYWTAP 250 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 RSI++KD+M L+R+DP YL+ N I ++D KG EV E +DWN E PN +FRQDPGK NA Sbjct: 251 RSIVEKDIMPLMRKDPTYLEKNAIRLLDGKGNEVAPETIDWNG-EAPNLMFRQDPGKTNA 309 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 MASTKI FY++N YMHDTP+ LFN ++RFE+SGCVRV+N+ DL WLL++TP W+R Sbjct: 310 MASTKINFYNKNGEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLSNWLLRETPGWNRQQ 369 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +E+V+ T TPVKLATEVPV+FVYISAW D I+QFRDDIY +D Sbjct: 370 MEQVIATGVNTPVKLATEVPVYFVYISAWGMPDGIVQFRDDIYQMDG 416 >gi|86357145|ref|YP_469037.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli CFN 42] gi|86281247|gb|ABC90310.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli CFN 42] Length = 433 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 202/407 (49%), Positives = 275/407 (67%), Gaps = 5/407 (1%) Query: 11 LYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPI 69 F ++ + S LD +IN +D+FD A R + S+ PI Sbjct: 12 RRAFLASAATIGAGAMAAPALAQSALDTLINAPRRGNWDDQFDAKAASRTATAVVSNTPI 71 Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPS 127 + +++A ++AI YQ I + GGWPE+ L LG SS +VQ LR+RL I+GDL Sbjct: 72 LGPQSVASAQQAIMQYQQIAAAGGWPEVNPGDQRLQLGVSSPAVQVLRQRLAITGDLPRE 131 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 G+S AFD+YV+ AVK FQ RHGL G++ TL+AMN+P D+R++QL NL+R++ Sbjct: 132 AGMSNAFDSYVDGAVKRFQARHGLPSDGVLGEFTLKAMNIPADVRLQQLNTNLVRLQTF- 190 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + +G R+++VNIPAA +EAVE+G V R T +VGR+ R T +++S+I ++ NPYW P Sbjct: 191 PEDLGRRHLMVNIPAAYVEAVEDGSVATRHTAVVGRLSRPTHLVNSKIYEVILNPYWTAP 250 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 RSI++KD+M L+R+DP YL+ N I +ID KG EV E +DWN E PN FRQDPGKINA Sbjct: 251 RSIVEKDIMPLMRKDPTYLEKNAIRLIDGKGNEVSPETIDWNG-EAPNLQFRQDPGKINA 309 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 MASTKI FY++N YMHDTP+ LFN ++RFE+SGCVRV+N+ DL WLL++TP WSR Sbjct: 310 MASTKINFYNKNGEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLSTWLLRETPGWSRQQ 369 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +E+V+ + TP+KLATEVPV+FVYISAW D I+QFRDDIY +D Sbjct: 370 MEQVIASGVNTPIKLATEVPVYFVYISAWGMPDGIVQFRDDIYQMDG 416 >gi|222085506|ref|YP_002544036.1| peptidoglycan binding protein [Agrobacterium radiobacter K84] gi|221722954|gb|ACM26110.1| peptidoglycan binding protein [Agrobacterium radiobacter K84] Length = 437 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 206/419 (49%), Positives = 281/419 (67%), Gaps = 8/419 (1%) Query: 13 CFFVYLILPMGLSLVEKPIH----ASVLDEIINESYHSIVNDRFDNFLARVDMG-IDSDI 67 FF+ G++ + P + LD +IN +D+FD A + S+ Sbjct: 13 RFFLRSAATFGVAALAAPALAQQDQTPLDALINNRARGNWDDQFDAKAAARTAAAVQSNT 72 Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLD 125 PI+ +++ ++AIA YQ+I + GGWP++ L LG + +VQ LR+ L+++GDL Sbjct: 73 PILGPDSVPNIQQAIAQYQNIAANGGWPQITPGDQKLQLGVTDGAVQALRQHLMVTGDLP 132 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 G+S AFD+YV+ AVK FQ RHGL P G++ TL+AMN+P ++R++QL NL+R++ Sbjct: 133 REAGISSAFDSYVDGAVKRFQARHGLPPDGVLGDFTLKAMNIPANVRLQQLNTNLVRLQT 192 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 +G R+V+VNIPA +EAVE+G+V LR IVGR R T +++S+I ++ NPYW Sbjct: 193 F-PADLGRRHVMVNIPATRVEAVEDGQVALRHEAIVGRESRPTHLINSKIYEVILNPYWT 251 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 PRSII KD+M L+R+DP YL NNI ++D KG+EV E +DWNS + PN +FRQDPGK Sbjct: 252 APRSIIIKDIMPLMRKDPTYLSKNNIRLLDGKGQEVAPETIDWNSDKAPNLMFRQDPGKT 311 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 NAMASTKI FY+ NN YMHDTPE LFN ++RF++SGCVRV+N+ DL WLL DTP W R Sbjct: 312 NAMASTKINFYNPNNEYMHDTPEQGLFNKLMRFDSSGCVRVQNVRDLATWLLTDTPGWPR 371 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPE 424 HIE+V+ TR TP+KLATEVPV+FVYISAWS D I+QFRDDIY LD + + Sbjct: 372 QHIEQVISTRVNTPIKLATEVPVYFVYISAWSAADGIVQFRDDIYNLDGNSQLALDTTQ 430 >gi|190891191|ref|YP_001977733.1| peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli CIAT 652] gi|190696470|gb|ACE90555.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli CIAT 652] gi|327192107|gb|EGE59084.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli CNPAF512] Length = 434 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 202/385 (52%), Positives = 270/385 (70%), Gaps = 5/385 (1%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 S LD ++N +D+FD A R + S+ PI+ +++A ++AI YQ I + Sbjct: 35 QSALDGLLNAPRRGNWDDQFDAKAASRTASAVVSNTPILGPQSVASAQQAIMQYQQIAAA 94 Query: 92 GGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 GGWPE+ L LG S +VQ LR+RL I+GDL G+S AFD+YV+ AVK FQ RH Sbjct: 95 GGWPEVNPGDQRLQLGVSHPAVQALRQRLAITGDLPREAGMSSAFDSYVDGAVKRFQARH 154 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL G++ TL+AMN+P D+R++QL NL+R++ + +G R+V+VNIPAA +EAVE Sbjct: 155 GLPSDGVLGEFTLKAMNIPADVRLQQLNTNLVRLQTF-PEDLGRRHVMVNIPAAYVEAVE 213 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 +G V R T +VGR+ R T +++S+I ++ NPYW PRSI++KD+M L+R+DP YL+ N Sbjct: 214 DGSVATRHTAVVGRLSRPTHLVNSKIYEVILNPYWTAPRSIVEKDIMPLMRKDPTYLEKN 273 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 I +ID KG EV E VDWN E PN FRQDPGKINAMASTKI FY++N YMHDTP+ Sbjct: 274 AIRLIDGKGNEVAPETVDWNG-EAPNLQFRQDPGKINAMASTKINFYNKNGEYMHDTPQQ 332 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LFN ++RFE+SGCVRV+N+ DL WLL++TP WSR +E+V+ T TP+KLATEVPV+ Sbjct: 333 GLFNKLMRFESSGCVRVQNVRDLTNWLLRETPGWSRQQMEQVIATGVNTPIKLATEVPVY 392 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDN 414 FVYISAW D I+QFRDDIY +D Sbjct: 393 FVYISAWGMPDGIVQFRDDIYQMDG 417 >gi|116251385|ref|YP_767223.1| hypothetical protein RL1618A [Rhizobium leguminosarum bv. viciae 3841] gi|115256033|emb|CAK07114.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 433 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 204/407 (50%), Positives = 274/407 (67%), Gaps = 5/407 (1%) Query: 11 LYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPI 69 F +L S LD +IN +D+FD A R + S+ PI Sbjct: 12 RRAFLASAATVGASALAAPAFAQSALDTLINAPRRGNWDDQFDAKAASRTATAMVSNTPI 71 Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPS 127 + +++A ++AI YQ I + GGWPE+ L LG SS SVQ LR+RL I+GDL Sbjct: 72 LGPQSVASAQQAIMQYQQIAAAGGWPEVNPGDQRLQLGVSSPSVQALRQRLAITGDLPRE 131 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD+YV+ AVK FQ RHGL G++ TL+AMN+P D+R++QL N++R++ Sbjct: 132 AGLSNAFDSYVDGAVKRFQARHGLPADGVLGEFTLKAMNIPADVRLQQLNTNVVRLQTF- 190 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + +G R+++VNIPAA +EAVE+G V R T +VGR+ R T +++S+I ++ NPYW P Sbjct: 191 PEDLGRRHLMVNIPAAYVEAVEDGSVATRHTAVVGRLSRPTHLVNSKIYEVILNPYWTAP 250 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 RSI++KD+M L+R+DP YL+ N I ++D KG EV E VDWN E PN +FRQDPGKINA Sbjct: 251 RSIVEKDIMPLMRKDPTYLEKNAIRLLDGKGNEVAPETVDWNG-EAPNLMFRQDPGKINA 309 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 MASTKI FY++N YMHDTP+ LFN ++RFE+SGCVRV+N+ DL WLL++TP WSR Sbjct: 310 MASTKINFYNKNGEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLTNWLLRETPGWSRQQ 369 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +E+V+ T TP+KLA EVPV+FVYISAW D I+QFRDDIY +D Sbjct: 370 MEQVIATGVNTPIKLAAEVPVYFVYISAWGMPDGIVQFRDDIYQMDG 416 >gi|328543533|ref|YP_004303642.1| Twin-arginine translocation pathway signal [polymorphum gilvum SL003B-26A1] gi|326413277|gb|ADZ70340.1| Twin-arginine translocation pathway signal [Polymorphum gilvum SL003B-26A1] Length = 415 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 171/403 (42%), Positives = 261/403 (64%), Gaps = 5/403 (1%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 + G+ + + AS L+ + + DRFD + ++ I S P +S ET Sbjct: 5 LAGFGIGAGVQSVTASPLEALRQYNQRIEWEDRFDATMESLE-AIKSSKPTLSPETADYL 63 Query: 79 EKAIAFYQDILSRGGWPELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 AI YQ I+ +GGW ++ L +G SV LR RLI SGDL+ + GLS FD+ Sbjct: 64 AAAINRYQFIVQQGGWGKVQSSRHGLRIGAQDASVVALRRRLIASGDLEQTAGLSDTFDS 123 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 YV++AV+ FQ+RHGL P G+V +T+ A+NVP ++R++QL+ NL+R++ + +G RYV Sbjct: 124 YVDAAVRRFQVRHGLIPDGVVGQTTVVALNVPAEVRLQQLETNLVRLRS-MSGFLGDRYV 182 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +VNIPAA +EAVENG+V R T +VG++DRQTPIL+S+I + FNPYW +P SII+KD++ Sbjct: 183 MVNIPAAEIEAVENGRVRSRHTAVVGKIDRQTPILNSKIYELNFNPYWTVPVSIIRKDLI 242 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 +++DP+YL N I + D K E+ +++DWN+ E + FRQ+PG IN++ S +I F+ Sbjct: 243 PKMKEDPEYLAKNKIRIFDWKNNELSWQQIDWNTDEATQYQFRQEPGDINSLGSVRINFH 302 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD-TPTWSRYHIEEVVKTR 375 +++ Y+HDTP LF + RF +SGCVRV+N+ +L W+L+ TP WSR ++E ++ Sbjct: 303 NQHQVYLHDTPSKSLFGSDYRFHSSGCVRVQNVRELVTWMLESTTPDWSRARVDETIRMG 362 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 VKL T+VP++ Y++AWS + I+ FRDDIY D ++ Sbjct: 363 VREDVKLKTQVPLYMTYVTAWSTDEGIVHFRDDIYNRDGLYAN 405 >gi|15888502|ref|NP_354183.1| hypothetical protein Atu1164 [Agrobacterium tumefaciens str. C58] gi|15156204|gb|AAK86968.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 443 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 192/380 (50%), Positives = 274/380 (72%), Gaps = 3/380 (0%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE 96 ++++ S +D+FD +R +G+ S+ P++ +E ++AI YQ I+ GGWP+ Sbjct: 38 NDLMGSSRRGNWDDQFDANTSRSAVGVVSNNPVLGREAPVYMQQAIMQYQQIVQNGGWPD 97 Query: 97 LPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +P + L +G S SVQ LR+RL++SGDL G+S AFD+YV+ A+K FQ RHGL Sbjct: 98 VPTSQQRLQIGVSDPSVQALRQRLMVSGDLPREAGISSAFDSYVDGALKRFQARHGLPAD 157 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G+ T +A+NV +R+ QLQ NL+RI+ + +G R+++VNIPAA++EAVEN +V Sbjct: 158 GVSGEYTTKALNVSAQIRLAQLQTNLVRIQS-MSGDLGQRHMMVNIPAAAIEAVENERVV 216 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 LR+T +VGR R T +++S++ ++ NPYW PRSI++KD++ L+++DP YL+ NNI +I Sbjct: 217 LRNTAVVGRASRPTHVINSKVYEVILNPYWTAPRSIVEKDIVPLMQKDPTYLERNNIRLI 276 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 D KG+EV VDW +P+ PN +FRQDPGKINAM+STKI F++ NN YMHDTP+ LFN Sbjct: 277 DGKGQEVSPTTVDWFAPKAPNLMFRQDPGKINAMSSTKINFHNPNNEYMHDTPQQGLFNK 336 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 ++RFE+SGCVRV+N+ DL WLL+DTP WSR +E V+ +R TP+KLA EVPV+FVYI+ Sbjct: 337 LMRFESSGCVRVQNVRDLTSWLLRDTPGWSRQEMERVIASRVNTPIKLAQEVPVYFVYIT 396 Query: 395 AWSPKDSIIQFRDDIYGLDN 414 AWS KD ++QFRDDIYG D Sbjct: 397 AWSAKDGVVQFRDDIYGKDG 416 >gi|325292539|ref|YP_004278403.1| hypothetical protein AGROH133_05364 [Agrobacterium sp. H13-3] gi|325060392|gb|ADY64083.1| hypothetical protein AGROH133_05364 [Agrobacterium sp. H13-3] Length = 443 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 193/380 (50%), Positives = 274/380 (72%), Gaps = 3/380 (0%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE 96 ++++ S +D+FD +R +G+ S+ P++ +E ++AI YQ I+ GGWP+ Sbjct: 38 NDLMGSSRRGNWDDQFDANSSRSAVGVVSNNPVLGREAPVYMQQAIMQYQQIVQNGGWPD 97 Query: 97 LPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +P+ + L +G S SVQ LR+RL++SGDL G+S AFD+YV+ A+K FQ RHGL Sbjct: 98 VPVTQQRLQIGVSDPSVQALRQRLMVSGDLPREAGISSAFDSYVDGALKRFQARHGLPAD 157 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G+ T +A+NV +R+ QLQ NL+RI+ + +G R+++VNIPAA++EAVEN +V Sbjct: 158 GVSGEYTTKALNVSAQIRLAQLQTNLVRIQS-MSGDLGQRHLMVNIPAAAIEAVENERVV 216 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 LR+T +VGR R T +++S+I ++ NPYW PRSI++KD++ L+++DP YL+ NNI +I Sbjct: 217 LRNTAVVGRASRPTHVINSKIYEVILNPYWTAPRSIVEKDIVPLMQKDPTYLERNNIRLI 276 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 D KG+EV VDW +P+ PN +FRQDPGKINAM+STKI F++ NN YMHDTP+ LFN Sbjct: 277 DGKGQEVSPTAVDWFAPKAPNLMFRQDPGKINAMSSTKINFHNPNNEYMHDTPQQGLFNK 336 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 ++RFE+SGCVRV+N+ DL WLL+DTP WSR +E V+ TR TP+KLA EVPV+FVYI+ Sbjct: 337 LMRFESSGCVRVQNVRDLTSWLLRDTPGWSRQEMERVIATRVNTPIKLAQEVPVYFVYIT 396 Query: 395 AWSPKDSIIQFRDDIYGLDN 414 AWS KD ++QFRDDIY D Sbjct: 397 AWSAKDGVVQFRDDIYEKDG 416 >gi|260466848|ref|ZP_05813032.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] gi|259029350|gb|EEW30642.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] Length = 417 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 188/388 (48%), Positives = 262/388 (67%), Gaps = 3/388 (0%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD 87 + V+ +I+ S +D+FD A + S +PI S +T+A TE+A+A YQ+ Sbjct: 22 GRASAQDVIGDILKSSARGNWDDQFDAR-ASEGGKVASTLPIFSPQTVAFTEQAVAQYQN 80 Query: 88 ILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 I+ +GGW ++P + L LG V LR+RL+I+GDL S G+S AFD+YV+SAVK FQ Sbjct: 81 IVGQGGWVDVPATKKLELGVDDPDVVPLRKRLMIAGDLSQSAGISTAFDSYVDSAVKRFQ 140 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 +RHGL G + T AMNV +R+ QLQ NL R+K+ +G RYVLV+IPAA +E Sbjct: 141 LRHGLPADGSMGKYTYAAMNVSAQIRLGQLQTNLQRLKE-KAGTLGSRYVLVDIPAAQIE 199 Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 AVEN +V LR T IVG++DRQTPI++S+IN I+ NPYW P SI++KD++ L+R+DP YL Sbjct: 200 AVENDRVVLRHTAIVGKIDRQTPIVNSKINEIIVNPYWNAPVSIVRKDIIPLMRKDPDYL 259 Query: 267 KDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT 326 K+++I + G EV VDW++ + + FRQDPG NAMAS KI F S + YMHDT Sbjct: 260 KNSHIRLFAPDGSEVDPMNVDWSTDDAAKYRFRQDPGSENAMASVKINFPSPDGVYMHDT 319 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P+ LF ++RF++SGCVRV+N+ DL W+L+DTP W R H E +KT + TP+++ V Sbjct: 320 PQQSLFGKMMRFDSSGCVRVQNVRDLVTWILRDTPGWDRQHFEAAIKTGQNTPIQVTNPV 379 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLDN 414 PVHF+Y+SAWS ++QFRDD+Y LD Sbjct: 380 PVHFLYLSAWSTGPGVVQFRDDVYALDG 407 >gi|319784167|ref|YP_004143643.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170055|gb|ADV13593.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 417 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 185/384 (48%), Positives = 259/384 (67%), Gaps = 3/384 (0%) Query: 32 HASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 V+ +I+ S +D+FD A + S +PI S +T+A TE+A+ YQ+I+ + Sbjct: 26 AQDVIGDILKSSARGNWDDQFDAR-ASEGGKVASTLPIFSPQTVAFTEQAVGQYQNIVGQ 84 Query: 92 GGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GGW E+P + L LG V LR+RL++SGDL S G+S AFD+YV+SAVK FQ+RHG Sbjct: 85 GGWVEVPATKKLQLGVDDPDVVPLRKRLMVSGDLSQSAGISTAFDSYVDSAVKRFQLRHG 144 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L G + T AMNV +R+ QLQ NL R+++ +G RYVLV+IPAA +EAVEN Sbjct: 145 LPADGSMGKYTYAAMNVSAQIRLGQLQTNLQRLRE-KAGTLGSRYVLVDIPAAQVEAVEN 203 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 +V LR T IVG++DRQTPI++S+I I+ NPYW P SI++KD++ L+R++P YLK+++ Sbjct: 204 DRVVLRHTAIVGKIDRQTPIVNSKITEIIVNPYWNAPVSIVRKDIIPLMRKNPDYLKNSH 263 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 I + G EV VDW++ + + FRQDPG NAMAS KI F S + YMHDTP+ Sbjct: 264 IRLFAPDGSEVDPMNVDWSTDDAAKYRFRQDPGSENAMASVKINFPSPDGVYMHDTPQQS 323 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 LF ++RF++SGCVRV+N+ DL W+L+DTP W R H E +KT + TP+++ VPVHF Sbjct: 324 LFGKMLRFDSSGCVRVQNVRDLVTWILRDTPGWDRQHFEAAIKTGENTPIQVTNPVPVHF 383 Query: 391 VYISAWSPKDSIIQFRDDIYGLDN 414 +Y+SAWS ++QFRDD+Y LD Sbjct: 384 LYLSAWSTGPGVVQFRDDVYALDG 407 >gi|161618731|ref|YP_001592618.1| peptidoglycan binding domain-containing protein [Brucella canis ATCC 23365] gi|254701537|ref|ZP_05163365.1| peptidoglycan binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|254704086|ref|ZP_05165914.1| peptidoglycan binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|254709878|ref|ZP_05171689.1| peptidoglycan binding domain-containing protein [Brucella pinnipedialis B2/94] gi|254713879|ref|ZP_05175690.1| peptidoglycan binding domain-containing protein [Brucella ceti M644/93/1] gi|254717064|ref|ZP_05178875.1| peptidoglycan binding domain-containing protein [Brucella ceti M13/05/1] gi|256031370|ref|ZP_05444984.1| peptidoglycan binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|256060880|ref|ZP_05451040.1| peptidoglycan binding domain-containing protein [Brucella neotomae 5K33] gi|256369195|ref|YP_003106703.1| peptidoglycan-binding protein, putative [Brucella microti CCM 4915] gi|260566666|ref|ZP_05837136.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str. 40] gi|261218874|ref|ZP_05933155.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1] gi|261317420|ref|ZP_05956617.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis B2/94] gi|261321627|ref|ZP_05960824.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1] gi|261752087|ref|ZP_05995796.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str. 513] gi|261754746|ref|ZP_05998455.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str. 686] gi|161335542|gb|ABX61847.1| Peptidoglycan-binding domain 1 protein [Brucella canis ATCC 23365] gi|255999355|gb|ACU47754.1| peptidoglycan-binding protein, putative [Brucella microti CCM 4915] gi|260156184|gb|EEW91264.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str. 40] gi|260923963|gb|EEX90531.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1] gi|261294317|gb|EEX97813.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1] gi|261296643|gb|EEY00140.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis B2/94] gi|261741840|gb|EEY29766.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str. 513] gi|261744499|gb|EEY32425.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str. 686] Length = 433 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 196/408 (48%), Positives = 271/408 (66%), Gaps = 3/408 (0%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 + L + ++V VL ++I+ +D+FD A + ++ P Sbjct: 17 RFLRSAATAGLSVAASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQP 75 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 ++S +T+A + AI Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL Sbjct: 76 VLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQE 135 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD YV++A+K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L Sbjct: 136 AGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLA 195 Query: 188 EQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 M R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 196 NDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTA 255 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SIIQKD++ L+R+DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKIN Sbjct: 256 PKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKIN 315 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R Sbjct: 316 AMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQ 375 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 376 NIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|23501649|ref|NP_697776.1| peptidoglycan-binding protein [Brucella suis 1330] gi|23347568|gb|AAN29691.1| peptidoglycan-binding protein, putative [Brucella suis 1330] Length = 433 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 196/408 (48%), Positives = 271/408 (66%), Gaps = 3/408 (0%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 + L + ++V VL ++I+ +D+FD A + ++ P Sbjct: 17 RFLRSAATAGLSVAASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQP 75 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 ++S +T+A + AI Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL Sbjct: 76 VLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQE 135 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD YV++A+K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L Sbjct: 136 AGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLA 195 Query: 188 EQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 M R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 196 NDTMQEQRFVMVNIPAACIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTA 255 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SIIQKD++ L+R+DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKIN Sbjct: 256 PKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKIN 315 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R Sbjct: 316 AMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQ 375 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 376 NIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|254718880|ref|ZP_05180691.1| peptidoglycan binding domain-containing protein [Brucella sp. 83/13] gi|265983867|ref|ZP_06096602.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13] gi|306838784|ref|ZP_07471617.1| peptidoglycan-binding protein [Brucella sp. NF 2653] gi|264662459|gb|EEZ32720.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13] gi|306406135|gb|EFM62381.1| peptidoglycan-binding protein [Brucella sp. NF 2653] Length = 433 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 197/408 (48%), Positives = 271/408 (66%), Gaps = 3/408 (0%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 + L + ++V VL ++I+ +D+FD A + ++ P Sbjct: 17 RFLRSAATAGLSVAASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQP 75 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 ++S +T+A + AI Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL Sbjct: 76 VLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQE 135 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD YV++A+K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L Sbjct: 136 AGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLA 195 Query: 188 EQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 M R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 196 NDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTA 255 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SIIQKD++ L+R+DPQYL N I + D+ G+EV E VDWN+ + +FRQDPGKIN Sbjct: 256 PKSIIQKDIIPLMRKDPQYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKIN 315 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R Sbjct: 316 AMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQ 375 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 376 NIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|306841990|ref|ZP_07474664.1| peptidoglycan-binding protein [Brucella sp. BO2] gi|306287918|gb|EFM59335.1| peptidoglycan-binding protein [Brucella sp. BO2] Length = 433 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 197/408 (48%), Positives = 271/408 (66%), Gaps = 3/408 (0%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 + L + ++V VL ++I+ +D+FD A + ++ P Sbjct: 17 RFLRSAATAGLSVAASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQP 75 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 ++S +T+A + AI Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL Sbjct: 76 VLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQE 135 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD YV++A+K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L Sbjct: 136 AGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLA 195 Query: 188 EQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 M R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 196 NDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTA 255 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SIIQKD++ L+R+DPQYL N I + D+ G+EV E VDWN+ + +FRQDPGKIN Sbjct: 256 PKSIIQKDIIPLMRKDPQYLTKNKIRLYDQSGQEVLPESVDWNTDDAVKLMFRQDPGKIN 315 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R Sbjct: 316 AMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQ 375 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 376 NIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|148558991|ref|YP_001258743.1| putative peptidoglycan-binding protein [Brucella ovis ATCC 25840] gi|261324878|ref|ZP_05964075.1| peptidoglycan binding domain-containing protein [Brucella neotomae 5K33] gi|265988457|ref|ZP_06101014.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M292/94/1] gi|148370248|gb|ABQ60227.1| putative peptidoglycan-binding protein [Brucella ovis ATCC 25840] gi|261300858|gb|EEY04355.1| peptidoglycan binding domain-containing protein [Brucella neotomae 5K33] gi|264660654|gb|EEZ30915.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M292/94/1] Length = 446 Score = 483 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 196/408 (48%), Positives = 271/408 (66%), Gaps = 3/408 (0%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 + L + ++V VL ++I+ +D+FD A + ++ P Sbjct: 30 RFLRSAATAGLSVAASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQP 88 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 ++S +T+A + AI Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL Sbjct: 89 VLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQE 148 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD YV++A+K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L Sbjct: 149 AGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLA 208 Query: 188 EQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 M R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 209 NDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTA 268 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SIIQKD++ L+R+DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKIN Sbjct: 269 PKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKIN 328 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R Sbjct: 329 AMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQ 388 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 389 NIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 436 >gi|256159492|ref|ZP_05457260.1| peptidoglycan binding domain-containing protein [Brucella ceti M490/95/1] gi|256254778|ref|ZP_05460314.1| peptidoglycan binding domain-containing protein [Brucella ceti B1/94] gi|260168504|ref|ZP_05755315.1| peptidoglycan-binding protein, putative [Brucella sp. F5/99] gi|261757974|ref|ZP_06001683.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99] gi|261737958|gb|EEY25954.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99] Length = 433 Score = 483 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 196/408 (48%), Positives = 270/408 (66%), Gaps = 3/408 (0%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 + L + ++V VL ++I+ +D+FD A + ++ P Sbjct: 17 RFLRSAATAGLSVAASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQP 75 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 ++S +T+A + AI Y DI SRGGWP +P L +G + VQ LR+RL+ISGDL Sbjct: 76 VLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPVVQYLRKRLMISGDLPQE 135 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD YV++A+K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L Sbjct: 136 AGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLA 195 Query: 188 EQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 M R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 196 NDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTA 255 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SIIQKD++ L+R+DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKIN Sbjct: 256 PKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKIN 315 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R Sbjct: 316 AMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQ 375 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 376 NIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|306843707|ref|ZP_07476307.1| peptidoglycan-binding protein [Brucella sp. BO1] gi|306276017|gb|EFM57726.1| peptidoglycan-binding protein [Brucella sp. BO1] Length = 433 Score = 483 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 197/408 (48%), Positives = 271/408 (66%), Gaps = 3/408 (0%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 + L + ++V VL ++I+ +D+FD A + ++ P Sbjct: 17 RFLRSAATAGLSVAASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQP 75 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 ++S +T+A + AI Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL Sbjct: 76 VLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQE 135 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD YV++A+K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L Sbjct: 136 AGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLA 195 Query: 188 EQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 M R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 196 NDAMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTA 255 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SIIQKD++ L+R+DPQYL N I + D+ G+EV E VDWN+ + +FRQDPGKIN Sbjct: 256 PKSIIQKDIIPLMRKDPQYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKIN 315 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R Sbjct: 316 AMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQ 375 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 376 NIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|260563801|ref|ZP_05834287.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. 16M] gi|260153817|gb|EEW88909.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. 16M] Length = 433 Score = 483 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 196/408 (48%), Positives = 271/408 (66%), Gaps = 3/408 (0%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 + L + ++V VL ++I+ +D+FD A + ++ P Sbjct: 17 RFLRSAATAGLSVAVSAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQP 75 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 ++S +T+A + AI Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL Sbjct: 76 VLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQE 135 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD YV++A+K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L Sbjct: 136 AGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLA 195 Query: 188 EQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 M R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 196 NDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTA 255 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SIIQKD++ L+R+DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKIN Sbjct: 256 PKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKIN 315 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R Sbjct: 316 AMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQ 375 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 376 NIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|254707013|ref|ZP_05168841.1| peptidoglycan binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261314480|ref|ZP_05953677.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M163/99/10] gi|261303506|gb|EEY07003.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M163/99/10] Length = 433 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 195/408 (47%), Positives = 271/408 (66%), Gaps = 3/408 (0%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 + L + ++V VL ++I+ +D+FD A + ++ P Sbjct: 17 RFLRSAATAGLSVAASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQP 75 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 ++S +T+A + AI Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL Sbjct: 76 VLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQE 135 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD YV++A+K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L Sbjct: 136 AGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLA 195 Query: 188 EQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 M R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 196 NDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTA 255 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SIIQKD++ L+R+DP+YL N I + D+ G+EV E +DWN+ + +FRQDPGKIN Sbjct: 256 PKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESMDWNTDDAVKLMFRQDPGKIN 315 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R Sbjct: 316 AMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQ 375 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 376 NIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|225627262|ref|ZP_03785299.1| peptidoglycan-binding protein [Brucella ceti str. Cudo] gi|261221958|ref|ZP_05936239.1| peptidoglycan binding domain-containing protein [Brucella ceti B1/94] gi|265997921|ref|ZP_06110478.1| peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1] gi|225617267|gb|EEH14312.1| peptidoglycan-binding protein [Brucella ceti str. Cudo] gi|260920542|gb|EEX87195.1| peptidoglycan binding domain-containing protein [Brucella ceti B1/94] gi|262552389|gb|EEZ08379.1| peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1] Length = 446 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 196/408 (48%), Positives = 270/408 (66%), Gaps = 3/408 (0%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 + L + ++V VL ++I+ +D+FD A + ++ P Sbjct: 30 RFLRSAATAGLSVAASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQP 88 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 ++S +T+A + AI Y DI SRGGWP +P L +G + VQ LR+RL+ISGDL Sbjct: 89 VLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPVVQYLRKRLMISGDLPQE 148 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD YV++A+K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L Sbjct: 149 AGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLA 208 Query: 188 EQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 M R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 209 NDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTA 268 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SIIQKD++ L+R+DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKIN Sbjct: 269 PKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKIN 328 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R Sbjct: 329 AMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQ 388 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 389 NIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 436 >gi|225852279|ref|YP_002732512.1| peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC 23457] gi|256044450|ref|ZP_05447354.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. Rev.1] gi|256113294|ref|ZP_05454162.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 3 str. Ether] gi|256264215|ref|ZP_05466747.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|225640644|gb|ACO00558.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC 23457] gi|263094459|gb|EEZ18281.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|326408784|gb|ADZ65849.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M28] gi|326538502|gb|ADZ86717.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M5-90] Length = 433 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 196/408 (48%), Positives = 271/408 (66%), Gaps = 3/408 (0%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 + L + ++V VL ++I+ +D+FD A + ++ P Sbjct: 17 RFLRSAATAGLSVAVSAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQP 75 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 ++S +T+A + AI Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL Sbjct: 76 VLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQE 135 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD YV++A+K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L Sbjct: 136 AGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLA 195 Query: 188 EQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 M R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 196 NDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTA 255 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SIIQKD++ L+R+DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKIN Sbjct: 256 PKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKIN 315 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R Sbjct: 316 AMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQ 375 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 376 NIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|62289715|ref|YP_221508.1| peptidoglycan-binding protein [Brucella abortus bv. 1 str. 9-941] gi|82699644|ref|YP_414218.1| peptidoglycan binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189023964|ref|YP_001934732.1| peptidoglycan binding domain protein [Brucella abortus S19] gi|254697160|ref|ZP_05158988.1| Putative peptidoglycan binding domain protein [Brucella abortus bv. 2 str. 86/8/59] gi|254730056|ref|ZP_05188634.1| Putative peptidoglycan binding domain protein [Brucella abortus bv. 4 str. 292] gi|260545531|ref|ZP_05821272.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC 8038] gi|260757741|ref|ZP_05870089.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4 str. 292] gi|260761566|ref|ZP_05873909.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2 str. 86/8/59] gi|62195847|gb|AAX74147.1| peptidoglycan-binding protein, hypothetical [Brucella abortus bv. 1 str. 9-941] gi|82615745|emb|CAJ10741.1| Putative peptidoglycan binding domain 1:Twin-arginine translocation pathway signal [Brucella melitensis biovar Abortus 2308] gi|189019536|gb|ACD72258.1| Putative peptidoglycan binding domain protein [Brucella abortus S19] gi|260096938|gb|EEW80813.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC 8038] gi|260668059|gb|EEX54999.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4 str. 292] gi|260671998|gb|EEX58819.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2 str. 86/8/59] Length = 433 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 195/408 (47%), Positives = 270/408 (66%), Gaps = 3/408 (0%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 + L + ++V VL ++I+ +D+FD A + ++ P Sbjct: 17 RFLRSAATAGLSVAASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQP 75 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 ++S +T+A + AI Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL Sbjct: 76 VLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQE 135 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD YV++A+K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L Sbjct: 136 AGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLA 195 Query: 188 EQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 M R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 196 NDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTA 255 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SIIQKD++ L+R+DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKIN Sbjct: 256 PKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKIN 315 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R Sbjct: 316 AMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTLGWDRQ 375 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 376 NIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|265990871|ref|ZP_06103428.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. Rev.1] gi|265994707|ref|ZP_06107264.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|262765820|gb|EEZ11609.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263001655|gb|EEZ14230.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. Rev.1] Length = 446 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 196/408 (48%), Positives = 271/408 (66%), Gaps = 3/408 (0%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 + L + ++V VL ++I+ +D+FD A + ++ P Sbjct: 30 RFLRSAATAGLSVAVSAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQP 88 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 ++S +T+A + AI Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL Sbjct: 89 VLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQE 148 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD YV++A+K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L Sbjct: 149 AGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLA 208 Query: 188 EQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 M R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 209 NDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTA 268 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SIIQKD++ L+R+DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKIN Sbjct: 269 PKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKIN 328 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R Sbjct: 329 AMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQ 388 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 389 NIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 436 >gi|254693508|ref|ZP_05155336.1| Putative peptidoglycan binding domain protein [Brucella abortus bv. 3 str. Tulya] gi|261213768|ref|ZP_05928049.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str. Tulya] gi|260915375|gb|EEX82236.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str. Tulya] Length = 433 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 195/408 (47%), Positives = 270/408 (66%), Gaps = 3/408 (0%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 + L + ++V VL ++I+ +D+FD A + ++ P Sbjct: 17 RFLRSAATAGLSVAASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQP 75 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 ++S +T+A + AI Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL Sbjct: 76 VLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQE 135 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD YV++A+K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L Sbjct: 136 AGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLA 195 Query: 188 EQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 M R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 196 NDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTA 255 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SIIQKD++ L+R+DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKIN Sbjct: 256 PKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKIN 315 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R Sbjct: 316 AMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTLGWDRQ 375 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 376 NIEATIKSGLNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|237815203|ref|ZP_04594201.1| peptidoglycan-binding protein [Brucella abortus str. 2308 A] gi|237790040|gb|EEP64250.1| peptidoglycan-binding protein [Brucella abortus str. 2308 A] Length = 446 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 195/408 (47%), Positives = 270/408 (66%), Gaps = 3/408 (0%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 + L + ++V VL ++I+ +D+FD A + ++ P Sbjct: 30 RFLRSAATAGLSVAASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQP 88 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 ++S +T+A + AI Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL Sbjct: 89 VLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQE 148 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD YV++A+K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L Sbjct: 149 AGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLA 208 Query: 188 EQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 M R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 209 NDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTA 268 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SIIQKD++ L+R+DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKIN Sbjct: 269 PKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKIN 328 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R Sbjct: 329 AMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTLGWDRQ 388 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 389 NIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 436 >gi|163843034|ref|YP_001627438.1| peptidoglycan binding domain-containing protein [Brucella suis ATCC 23445] gi|163673757|gb|ABY37868.1| Peptidoglycan-binding domain 1 protein [Brucella suis ATCC 23445] Length = 433 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 194/408 (47%), Positives = 269/408 (65%), Gaps = 3/408 (0%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 + L + ++V VL ++I+ +D+FD A + ++ P Sbjct: 17 RFLRSAATAGLSVAASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQP 75 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 ++S +T+A + AI Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL Sbjct: 76 VLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQE 135 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD YV++A+K FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L Sbjct: 136 AGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLA 195 Query: 188 EQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 196 NDTTQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTA 255 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SIIQKD++ L+R+DP+YL N I + D+ G+EV E VDWN+ + +FRQD GKIN Sbjct: 256 PKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDSGKIN 315 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R Sbjct: 316 AMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQ 375 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 376 NIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|294852125|ref|ZP_06792798.1| peptidoglycan binding domain-containing protein [Brucella sp. NVSL 07-0026] gi|294820714|gb|EFG37713.1| peptidoglycan binding domain-containing protein [Brucella sp. NVSL 07-0026] Length = 433 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 195/408 (47%), Positives = 272/408 (66%), Gaps = 3/408 (0%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 + L + ++V VL ++I+ +D+FD A + ++ P Sbjct: 17 RFLRSAATAGLSVAASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQP 75 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 ++S +T+A + AI Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL Sbjct: 76 VLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQE 135 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD YV++A+K FQ RHGL G++ T A+NV V+ R+ QLQ NL R+ L Sbjct: 136 AGLSTAFDTYVDAALKRFQARHGLPADGVMGQFTYAAVNVDVNTRLGQLQTNLQRLAPLA 195 Query: 188 EQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 M R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 196 NDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTA 255 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SIIQKD++ L+R+DP+YL N I + D+ G+EV +E VDWN+ + +FRQDPGKIN Sbjct: 256 PKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPLESVDWNTDDAVKLMFRQDPGKIN 315 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R Sbjct: 316 AMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQ 375 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 376 NIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|17987476|ref|NP_540110.1| cell wall degradation protein [Brucella melitensis bv. 1 str. 16M] gi|17983172|gb|AAL52374.1| cell wall degradation protein [Brucella melitensis bv. 1 str. 16M] Length = 400 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 195/391 (49%), Positives = 267/391 (68%), Gaps = 3/391 (0%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 +V VL ++I+ +D+FD A + ++ P++S +T+A + AI Y Sbjct: 1 MVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQPVLSPQTVADIQNAIVQY 59 Query: 86 QDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 DI SRGGWP +P L +G + +VQ LR+RL+ISGDL GLS AFD YV++A+K Sbjct: 60 TDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQEAGLSTAFDTYVDAALKR 119 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM-GLRYVLVNIPAA 203 FQ RHGL G++ T AMNV V+ R+ QLQ NL R+ L M R+V+VNIPAA Sbjct: 120 FQARHGLPADGVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLANDTMQEQRFVMVNIPAA 179 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW P+SIIQKD++ L+R+DP Sbjct: 180 RIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTAPKSIIQKDIIPLMRKDP 239 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYM 323 +YL N I + D+ G+EV E VDWN+ + +FRQDPGKINAM+STKI F++ YM Sbjct: 240 EYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKINAMSSTKINFHNPYAVYM 299 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 HDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+TP W R +IE +K+ TP++LA Sbjct: 300 HDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTPGWDRQNIEATIKSGVNTPIQLA 359 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 360 DPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 390 >gi|254689025|ref|ZP_05152279.1| Putative peptidoglycan binding domain protein [Brucella abortus bv. 6 str. 870] gi|256257275|ref|ZP_05462811.1| Putative peptidoglycan binding domain protein [Brucella abortus bv. 9 str. C68] gi|260754520|ref|ZP_05866868.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str. 870] gi|297248121|ref|ZP_06931839.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|260674628|gb|EEX61449.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str. 870] gi|297175290|gb|EFH34637.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 5 str. B3196] Length = 433 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 194/408 (47%), Positives = 269/408 (65%), Gaps = 3/408 (0%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 + L + ++V VL ++I+ +D+FD A + ++ P Sbjct: 17 RFLRSAATAGLSVAASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQP 75 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 ++S +T+A + AI Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL Sbjct: 76 VLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQE 135 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD YV++A+K FQ RHGL ++ T AMNV V+ R+ QLQ NL R+ L Sbjct: 136 AGLSTAFDTYVDAALKRFQARHGLPADAVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLA 195 Query: 188 EQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 M R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 196 NDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTA 255 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SIIQKD++ L+R+DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKIN Sbjct: 256 PKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKIN 315 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R Sbjct: 316 AMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTLGWDRQ 375 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 376 NIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 423 >gi|260883548|ref|ZP_05895162.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260873076|gb|EEX80145.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 9 str. C68] Length = 446 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 194/408 (47%), Positives = 269/408 (65%), Gaps = 3/408 (0%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 + L + ++V VL ++I+ +D+FD A + ++ P Sbjct: 30 RFLRSAATAGLSVAASAMVSSAYAQQVLSDVISSPRRGNWDDQFDAR-ATGGRRVATNQP 88 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 ++S +T+A + AI Y DI SRGGWP +P L +G + +VQ LR+RL+ISGDL Sbjct: 89 VLSPQTVADIQNAIVQYTDIASRGGWPLVPGNARLQIGVNDPAVQYLRKRLMISGDLPQE 148 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 GLS AFD YV++A+K FQ RHGL ++ T AMNV V+ R+ QLQ NL R+ L Sbjct: 149 AGLSTAFDTYVDAALKRFQARHGLPADAVMGQFTYAAMNVDVNTRLGQLQTNLQRLAPLA 208 Query: 188 EQKM-GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 M R+V+VNIPAA +EAVE G V R T +VG++DRQTP+L+S+I+ ++ NPYW Sbjct: 209 NDTMQEQRFVMVNIPAARIEAVEGGSVIQRHTAVVGKIDRQTPLLNSKIHEVILNPYWTA 268 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SIIQKD++ L+R+DP+YL N I + D+ G+EV E VDWN+ + +FRQDPGKIN Sbjct: 269 PKSIIQKDIIPLMRKDPEYLTKNKIRLYDQSGQEVPPESVDWNTDDAVKLMFRQDPGKIN 328 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 AM+STKI F++ YMHDTP+ FN ++RF++SGCVRV+N+ DLDVWLLK+T W R Sbjct: 329 AMSSTKINFHNPYAVYMHDTPQKSYFNKLMRFDSSGCVRVQNVRDLDVWLLKNTLGWDRQ 388 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +IE +K+ TP++LA VP+HFVYISAWS D ++QFRDDIY +D Sbjct: 389 NIEATIKSGVNTPIQLADPVPLHFVYISAWSTGDGVVQFRDDIYKMDG 436 >gi|118587981|ref|ZP_01545391.1| hypothetical protein SIAM614_10408 [Stappia aggregata IAM 12614] gi|118439603|gb|EAV46234.1| hypothetical protein SIAM614_10408 [Stappia aggregata IAM 12614] Length = 434 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 159/372 (42%), Positives = 243/372 (65%), Gaps = 5/372 (1%) Query: 48 VNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI--RPLHLG 105 D FD + + S P +S +T AI YQ I+ GGW + + L +G Sbjct: 57 WADNFDIATDHITE-VKSSAPTLSPQTADYIAAAIDRYQRIVQAGGWGTVSTGGKALRIG 115 Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V LR RL++SGDL+ GLS FD+YV++ ++ FQ+RHGL P G++ ST+ A+ Sbjct: 116 AKDPRVVELRRRLMVSGDLEQQAGLSDTFDSYVDAGLRRFQLRHGLIPDGVMGDSTVTAL 175 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 N+P D+R+RQL+ N++R++ + +G RYV+VNIPAA +EAVENG V R T +VG++D Sbjct: 176 NIPADVRLRQLETNMIRMRS-MSGFLGDRYVMVNIPAAEIEAVENGMVRSRHTAVVGKID 234 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 RQTPIL+S+I + FNPYW +P+SII+KD++ +++DPQYL NNI + D E+ ++ Sbjct: 235 RQTPILNSKIYELNFNPYWTVPKSIIRKDLIPKMKEDPQYLAKNNIRIFDWSNNELTWQQ 294 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 +DWN+ E + F QDPG N++ S +I F++++ Y+HDTP LF RF +SGCVR Sbjct: 295 IDWNTDEATQYRFTQDPGSENSLGSVRINFHNKHQVYLHDTPSKTLFGEANRFHSSGCVR 354 Query: 346 VRNIIDLDVWLLKD-TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQ 404 V+N+ +L WLL+ TP W R ++ V++T + VKL +++P++ YI+AW+ D ++ Sbjct: 355 VQNVRELVTWLLQSTTPDWDRGRVDGVIRTGEREDVKLKSQIPLYLTYITAWANADGVVH 414 Query: 405 FRDDIYGLDNVH 416 FRDDIY D+++ Sbjct: 415 FRDDIYDRDDLY 426 >gi|304391945|ref|ZP_07373887.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] gi|303296174|gb|EFL90532.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] Length = 421 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 181/388 (46%), Positives = 249/388 (64%), Gaps = 3/388 (0%) Query: 29 KPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDI 88 + + + +D I+N ND FD + + PI + +TI ++AIA Y +I Sbjct: 28 QALAETAIDRILNAPNRDSWNDSFDATAP-TKAKVVTSTPIFAPQTIDSVQQAIAEYSNI 86 Query: 89 LSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 + GGWP +P + L LG S +V+ LR+RLIISGDL G+S FD YV++AVK FQ Sbjct: 87 VRNGGWPRVPAGKKLELGVSDDAVRALRQRLIISGDLPRGAGVSPQFDTYVDAAVKRFQA 146 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 RHGL G++ + A+NV +R+ QLQ NL+R+K + +G RYV+VNIPAA +EA Sbjct: 147 RHGLPSDGVMGRYSFAALNVSAPIRLGQLQTNLVRLKA-MSGYLGDRYVMVNIPAAEIEA 205 Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 VE G+V R T IVGR RQTPIL+S+I + NPYW P+SII KD++ L+R++P YL Sbjct: 206 VELGRVAQRHTAIVGRESRQTPILNSKIYELNLNPYWTAPKSIILKDIIPLMRKNPNYLT 265 Query: 268 DNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTP 327 +N I + D +EV + V+WN+ E FRQ+PG+INAM S KI F + + YMHDTP Sbjct: 266 ENKILLFDGNSQEVSPQSVNWNTEEAVKLRFRQEPGRINAMGSVKINFPNPHAVYMHDTP 325 Query: 328 EPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVP 387 + +FN ++RFE+SGCVRV+N+ DL VWL KDTP SR +IE ++ + T +KL VP Sbjct: 326 QKGIFNKLLRFESSGCVRVKNVRDLLVWLAKDTPGASRSNIESIIASGDRTDLKLTAPVP 385 Query: 388 VHFVYISAWSPKDSIIQFRDDIYGLDNV 415 V+F Y+SAWS + FRDDIY D V Sbjct: 386 VYFAYVSAWSNTSGVAHFRDDIYQRDGV 413 >gi|254469893|ref|ZP_05083298.1| twin-arginine translocation pathway signal [Pseudovibrio sp. JE062] gi|211961728|gb|EEA96923.1| twin-arginine translocation pathway signal [Pseudovibrio sp. JE062] Length = 448 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 168/380 (44%), Positives = 246/380 (64%), Gaps = 5/380 (1%) Query: 48 VNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGN 106 D FD ++ ++ ID PIISK+T AI Y+ I GGWPE+ + L +G Sbjct: 67 WEDTFDEGVSSLE-QIDFVAPIISKQTTQYMIDAILDYERIALNGGWPEVSTKKVLRIGM 125 Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + ++ LR+RLI+SGD+ G+S FD+YV+SAV+ FQ+RHGL P G+V +T+ AMN Sbjct: 126 RAPAIASLRQRLIVSGDMAQHAGVSEVFDSYVDSAVRRFQLRHGLTPDGVVGRATVIAMN 185 Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 VPV++R++QL+ NL R+ L + YV VNIPAA +E VENG+V R T +VG+ DR Sbjct: 186 VPVEVRLQQLRTNLERVSA-LADNVSDTYVNVNIPAARIEVVENGRVRSRHTAVVGKQDR 244 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 Q+PIL S I + FNPYW +P SII+KD++ +++DPQYL NNIH+ D GKE +E+ Sbjct: 245 QSPILSSAIYEVNFNPYWTVPVSIIRKDLIPKMQKDPQYLAKNNIHIFDWYGKEKQWQEI 304 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 DWN+ E + F Q+PG+ N+M S +I F + + Y+HDTPE LF RF +SGCVRV Sbjct: 305 DWNTDEATKYRFTQEPGEGNSMGSIRINFNNTHQVYLHDTPEQSLFGEGYRFHSSGCVRV 364 Query: 347 RNIIDLDVWLL-KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 +N+ +L WLL TP W+R ++ + + + VK+ + +P+H Y++AW+ D ++ F Sbjct: 365 QNVRELVTWLLGSTTPEWTRSRVDATINSGERLDVKMKSRIPLHLSYVTAWALSDGMVHF 424 Query: 406 RDDIYGLDNVHVGII-PLPE 424 RDDIY D ++ + PL + Sbjct: 425 RDDIYDKDGLYSASVDPLAQ 444 >gi|254502740|ref|ZP_05114891.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] gi|222438811|gb|EEE45490.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] Length = 408 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 159/388 (40%), Positives = 246/388 (63%), Gaps = 6/388 (1%) Query: 32 HASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 AS D FD + + S P +S T+ AI YQ I+ Sbjct: 14 AASAQQSFRTAGQDLEWADSFDIATDNITE-VKSYAPTLSPTTVDYIGAAITRYQSIVQM 72 Query: 92 GGWPELPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 GGW + + L +G V ++R+RLIISGDL+ GLS FD+YV++A++ FQ+RH Sbjct: 73 GGWGTVSTGGKALRIGMKDPRVVQVRQRLIISGDLEQQAGLSDTFDSYVDAALRRFQLRH 132 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL P G++ ST+EA+N+P +R+RQL+ NL+R++ + +G RYV+VNIPAA +EAVE Sbjct: 133 GLIPDGVMGESTVEALNIPAYVRLRQLETNLVRVRS-MSGNLGDRYVMVNIPAAEIEAVE 191 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 +G+V R T +VG++DRQTPIL+S+I + FNPYW +P SII+KD++ +++DP+YL N Sbjct: 192 DGRVRSRHTAVVGKIDRQTPILNSKIYELNFNPYWTVPVSIIRKDLIPKMKEDPEYLSRN 251 Query: 270 NIHMID-EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 I + + +EV +++DWN+ E + F QDPG+ N++ S +I F++++ Y+HDTP Sbjct: 252 KIRIFNWRDNQEVAWQQIDWNTDEATQYRFTQDPGQENSLGSVRINFHNKHQVYLHDTPS 311 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKD-TPTWSRYHIEEVVKTRKTTPVKLATEVP 387 LF RF +SGCVRV+N+ +L WLL+ TP W R ++ V++T + VKL +P Sbjct: 312 KTLFGEDYRFHSSGCVRVQNVRELVTWLLQSTTPDWDRTKVDSVIRTGEREDVKLKRSIP 371 Query: 388 VHFVYISAWSPKDSIIQFRDDIYGLDNV 415 ++ Y++AW+ D ++ FR+DIY D++ Sbjct: 372 LYMTYVTAWANADGVVHFREDIYNRDDL 399 >gi|218662321|ref|ZP_03518251.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli IE4771] Length = 495 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 189/367 (51%), Positives = 258/367 (70%), Gaps = 5/367 (1%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 S LD ++N +D+FD A R + S+ PI+ +++A ++AI YQ I + Sbjct: 35 QSALDGLLNAPRRGNWDDQFDAKAASRTATAVVSNTPILGPQSVASAQQAIMQYQQIAAA 94 Query: 92 GGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 GGWPE+ L LG S +VQ LR+RL I+GDL GLS AFD+YV+ AVK FQ RH Sbjct: 95 GGWPEVNPGDQRLQLGVSHPAVQALRQRLAITGDLPREAGLSSAFDSYVDGAVKRFQARH 154 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL G++ TL+AMN+P D+R++QL N++R++ + +G R+++VNIPAA +EAVE Sbjct: 155 GLPADGVLGEFTLKAMNIPADVRLQQLNTNIVRLQTF-PEDLGRRHLMVNIPAAYVEAVE 213 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 +G V R T +VGR+ R T +++S+I ++ NPYW PRSI++KD+M L+R+DP YL+ N Sbjct: 214 DGSVATRHTAVVGRLSRPTHLVNSKIYEVILNPYWTAPRSIVEKDIMPLMRKDPTYLEKN 273 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 I +ID KG EV E VDWN E PN +FRQDPGKINAMASTKI FY++N YMHDTP+ Sbjct: 274 AIRLIDGKGNEVAPETVDWNG-EAPNLMFRQDPGKINAMASTKINFYNKNGEYMHDTPQQ 332 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LFN ++RFE+SGCVRV+N+ DL WLL++TP WSR +E+V+ + TP+KLA EVPV+ Sbjct: 333 GLFNKLMRFESSGCVRVQNVRDLTNWLLRETPGWSRQQMEQVIASGVNTPIKLAAEVPVY 392 Query: 390 FVYISAW 396 FVYISAW Sbjct: 393 FVYISAW 399 >gi|209965708|ref|YP_002298623.1| peptidoglycan binding domain protein, putative [Rhodospirillum centenum SW] gi|209959174|gb|ACI99810.1| peptidoglycan binding domain protein, putative [Rhodospirillum centenum SW] Length = 596 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 120/418 (28%), Positives = 193/418 (46%), Gaps = 12/418 (2%) Query: 18 LILPMGLSLVEKPIHASVLD-EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA 76 L G L + S +D E+I E D G ++ Sbjct: 150 GALLFGRDLAAGRLDPSRIDPELIVERQEPDPQALLRQVAEAADPGGAVRAMAPARPEYR 209 Query: 77 QTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA- 133 + A+A Y+ + + GGW +P L G S V LR RL +G+L P+ Sbjct: 210 RLRAALAAYRTLAAAGGWLAVPTGGETLKPGQSDPRVPALRARLAATGELSPAAPAPADP 269 Query: 134 --FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 +D +E+AV+LFQ R+GL+P G V ++ A+NV R+ Q+++N+ R + L + Sbjct: 270 QFYDPALEAAVRLFQSRNGLEPDGAVGRQSVAALNVTAQQRVTQIEINMERWR-WLPADL 328 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G Y++VN+ A L E + + ++VG +TP+ + + NPYW +P SI Sbjct: 329 GPSYLIVNLAAFELAVFEGDRPVHTARIVVGAPFTRTPVFSESMTYLELNPYWNVPPSIA 388 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + ++ R+DP YL ++ + + V VDW + RQ PG N++ Sbjct: 389 RDEIFPKARKDPGYLARRGYELLSDWSETAVPVDPATVDWRHGNLNRYKVRQKPGDTNSL 448 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK--DTPTWSRY 366 K F +R N Y+HDTP LF R + GC+RV N +DL +L+ T W R Sbjct: 449 GRIKFMFPNRFNVYLHDTPSKRLFERANRTFSHGCMRVENPLDLAETVLRLTGTTGWDRA 508 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPE 424 ++ + + V+L +PVH Y++A+ +D + FR DIYG D + P+ Sbjct: 509 RLDAAIAGDQRQVVRLRRPLPVHVTYVTAFVEEDGTVAFRPDIYGRDTTLAAALAAPQ 566 >gi|218515859|ref|ZP_03512699.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli 8C-3] Length = 372 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 193/357 (54%), Positives = 257/357 (71%), Gaps = 4/357 (1%) Query: 60 DMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVSVQRLRER 117 + S+ PI+ +++A ++AI YQ I + GGWPE+ L LG S +VQ LR+R Sbjct: 1 ASAVVSNTPILGPQSVASAQQAIMQYQQIAAAGGWPEVNPGDQRLQLGVSHPAVQALRQR 60 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 L I+GDL G+S AFD+YV+ AVK FQ RHGL G++ TL+AMN+P D+R++QL Sbjct: 61 LAITGDLPREAGMSSAFDSYVDGAVKRFQARHGLPSDGVLGEFTLKAMNIPADVRLQQLN 120 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 NL+R++ + +G R+V+VNIPAA +EAVE+G V R T +VGR+ R T +++S+I Sbjct: 121 TNLVRLQTF-PEDLGRRHVMVNIPAAYVEAVEDGSVATRHTAVVGRLSRPTHLVNSKIYE 179 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 ++ NPYW PRSI++KD+M L+R+DP YL+ N I +ID KG EV E VDWN E PN Sbjct: 180 VILNPYWTAPRSIVEKDIMPLMRKDPTYLEKNAIRLIDGKGNEVAPETVDWNG-EAPNLQ 238 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 FRQDPGKINAMASTKI FY++N YMHDTP+ LFN ++RFE+SGCVRV+N+ DL WLL Sbjct: 239 FRQDPGKINAMASTKINFYNKNGEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLTNWLL 298 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 ++TP WSR +E+V+ T TP+KLATEVPV+FVYISAW D I+QFRDDIY +D Sbjct: 299 RETPGWSRQQMEQVIATGVNTPIKLATEVPVYFVYISAWGMPDGIVQFRDDIYQMDG 355 >gi|114319260|ref|YP_740943.1| peptidoglycan binding domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114225654|gb|ABI55453.1| Peptidoglycan-binding domain 1 protein [Alkalilimnicola ehrlichii MLHE-1] Length = 559 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 128/396 (32%), Positives = 206/396 (52%), Gaps = 9/396 (2%) Query: 40 INESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI 99 + + LA D+ ++ Q +A+A +Q + +G +P + Sbjct: 153 LQSPPSEDLVQALSQGLAEDDIATAVRQLYPDQDNYHQMRRALARFQALAEQGDYPRMEA 212 Query: 100 RPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA-FDAYVESAVKLFQMRHGLDPSGMV 157 PL +G+ V+ LRE+L + GDL+ LS + +E+AV+ FQ RHGL G+V Sbjct: 213 GPLLRVGDRDPRVETLREQLRLLGDLEDDAPLSETLYGEALEAAVRDFQRRHGLQVDGVV 272 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 T+ A+N P R QL+VNL R++ + + +G RY+LVNI S+ G+ +R Sbjct: 273 GPRTVAALNTPPADRAEQLRVNLERLR-WMPRDLGDRYILVNIAGFSMTVHAEGETVMRQ 331 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V+VGR R+TP+ + ++ NP W +P + +D++ L+++DP+YL+ ++ Sbjct: 332 RVVVGRDYRRTPVFTGNMTYLVLNPSWEVPHRLATRDVLPLIQRDPEYLERMGFRVLQGW 391 Query: 278 G---KEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 G +E+ E +DW+ F +R Q PG NAM K F +R+N Y+HDTP LF Sbjct: 392 GADEREIDPESLDWDRYSHRYFPYRLRQLPGPQNAMGRVKFMFPNRHNVYLHDTPSRELF 451 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 R +SGC+RV ++L WLL+D WS I++ ++ R+ V L +PVH Y Sbjct: 452 QQPRRAFSSGCIRVERPLELAAWLLRDQRQWSPEAIDKALEERRERTVPLRRGIPVHLQY 511 Query: 393 ISAWSPKDSIIQFRDDIYGLD-NVHVGIIPLPEDHP 427 +AW + + FRDD+Y D V + LP+ P Sbjct: 512 WTAWVDAEGTLHFRDDLYDRDTGVAAALAALPKPEP 547 >gi|182677877|ref|YP_001832023.1| peptidoglycan binding domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182633760|gb|ACB94534.1| Peptidoglycan-binding domain 1 protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 456 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 167/401 (41%), Positives = 258/401 (64%), Gaps = 10/401 (2%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESY--HSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 ++L MGL L + P+ S + Y + R+D + S++P++S +T+ Sbjct: 33 ILLAMGLCLSQLPLQVS---SALAGPYGSQAEWAQRYDTDANLA--VLRSNVPVLSVQTL 87 Query: 76 AQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 TE+AI Y++I++RGGW + L LG ++ +V LR+RLI +GDLD S G S F Sbjct: 88 NATEQAIETYRNIVARGGWNRVSASATLKLGANNAAVTELRKRLIETGDLDASAGTSPIF 147 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D+YV++ V+ FQ RHGL +G+V+ T+ AMNVP D+R+ QL+VNL+R++ +G R Sbjct: 148 DSYVDAGVRHFQARHGLAETGIVNRETVTAMNVPADVRLHQLEVNLVRLRSY-SGNLGER 206 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +V+ NIPA ++E VENG V VG++DRQ+P++ +R I FNPYW +P SII+KD Sbjct: 207 FVMANIPAMAVETVENGVVATHHIAGVGKIDRQSPVMMTRATDINFNPYWTVPASIIRKD 266 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKI 313 ++ +++DP YL D+ I + ++ G+E+ +V+WNS E N+ FRQDPG IN++ +I Sbjct: 267 LIPRMQKDPNYLSDHKIRIFNKDGQELQSSQVNWNSLEATNYRFRQDPGGDINSLGVVRI 326 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + YMHDTPE +F + RF +SGC+RV+N+ D WLLKDTP W R HI+E ++ Sbjct: 327 NIANPYGVYMHDTPEKGVFGDDERFVSSGCIRVQNVRDYVTWLLKDTPGWDRAHIDEAIR 386 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + K+ + VPV++VY++AW+ D ++QFR+DIY D Sbjct: 387 SGQRIDAKITSSVPVYWVYVTAWATPDGLVQFREDIYQRDG 427 >gi|307946606|ref|ZP_07661941.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] gi|307770270|gb|EFO29496.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] Length = 437 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 163/394 (41%), Positives = 250/394 (63%), Gaps = 5/394 (1%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD 87 S L + + D F + + + ++S P +S ET AI Y Sbjct: 35 SSASAESPLQALQQYNQRVEWQDDFQSTVQSLK-ALESSAPTLSPETADYMGVAIDRYSR 93 Query: 88 ILS--RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 I+ G R L +G+ V LR+RL+ SGDL + G+S FD+YV++AV+ F Sbjct: 94 IVQLGGWGGVTSGGRALRIGSKDNRVVELRQRLMASGDLQQNAGMSSVFDSYVDAAVRRF 153 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 Q+RHGL P G+V ST+ A+NVP ++R+RQL+ NL+R++ + +G RYV+VNIPAA + Sbjct: 154 QLRHGLLPDGVVGESTIVALNVPANVRLRQLETNLVRLRS-MSGFLGDRYVMVNIPAAEI 212 Query: 206 EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 EAVE G+V R T +VG++DRQTPIL+S+I + FNPYW +P SII+KD++ ++QDPQY Sbjct: 213 EAVEYGRVRSRHTAVVGKIDRQTPILNSKIYELNFNPYWTVPVSIIRKDLIPKMKQDPQY 272 Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHD 325 L N I + D KG E+ +++DWN+ E + FRQ+PG+IN++ S +I F++++ Y+HD Sbjct: 273 LAKNRIRIFDWKGNELAWQQIDWNTDEATKYQFRQEPGEINSLGSVRINFHNKHQVYLHD 332 Query: 326 TPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD-TPTWSRYHIEEVVKTRKTTPVKLAT 384 TP LF + RF +SGCVRV+N+ ++ WLL+ TP W R +++V++T V+L + Sbjct: 333 TPSKTLFGSDYRFHSSGCVRVQNVREMVTWLLQSTTPDWDRARVDQVIRTGAREDVRLKS 392 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 +P++ YI+AW+ D +I FRDD+Y D ++ G Sbjct: 393 SIPLYLTYITAWANADGVIHFRDDVYNRDGLYNG 426 >gi|217978266|ref|YP_002362413.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] gi|217503642|gb|ACK51051.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] Length = 447 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 166/416 (39%), Positives = 253/416 (60%), Gaps = 8/416 (1%) Query: 21 PMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEK 80 + L + AS+ S + R+D R+ + S+ P++S++T+A TE+ Sbjct: 14 AIAAILTGLCLGASLPALAAGYSDQAEWAQRYDA-APRLAV-TRSNTPVLSQQTLAATEQ 71 Query: 81 AIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 AI Y+ I++ GGW +P L LG S SV LR+RL+ SGDLD S G S FD++VE Sbjct: 72 AIETYRQIVASGGWNMVPASNVLKLGVSGPSVVALRKRLVASGDLDASAGASPVFDSFVE 131 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 + VK FQ RHGL +G+V T A+N DLR+ QL++NL+R++ +G R+V+ N Sbjct: 132 AGVKHFQARHGLLETGLVSKDTFAALNATADLRLHQLEINLIRLRSY-SGNLGERFVMAN 190 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IPA ++E VENG V VG++DRQ+P++ ++ I FNP+W +P S+I+KD++ + Sbjct: 191 IPAMAVETVENGAVATHHAAGVGKIDRQSPVMMTKATDINFNPFWTMPPSLIKKDLIPRM 250 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG-KINAMASTKIEFYSR 318 +++P YL ++ I + D+ +EV ++DW + + N+ +RQDPG IN++ +I + Sbjct: 251 QKNPDYLTEHKIRIFDKDNQEVPPSQIDWTTNQATNYRYRQDPGGDINSLGVVRINISNP 310 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 YMHDTPE +F + RF +SGC+RV+N+ D WLLKDTP W R HI+E +++ + Sbjct: 311 YGVYMHDTPEKGVFGDDFRFVSSGCIRVQNVRDYVAWLLKDTPGWDREHIDEAIRSGQRI 370 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN---VHVGIIPLPEDHPIDSD 431 KLAT VPV++VYI+AWS + +IQFRDDIY D + P + I D Sbjct: 371 DAKLATPVPVYWVYITAWSTPEGLIQFRDDIYQRDGFGPTASSGVGAPLEQAIQPD 426 >gi|194334694|ref|YP_002016554.1| peptidoglycan-binding domain 1 protein [Prosthecochloris aestuarii DSM 271] gi|194312512|gb|ACF46907.1| Peptidoglycan-binding domain 1 protein [Prosthecochloris aestuarii DSM 271] Length = 565 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 122/408 (29%), Positives = 203/408 (49%), Gaps = 24/408 (5%) Query: 38 EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA-------QTEKAIAFYQDILS 90 E ++ +++ D L R+ I+ D + E I +KA+A Y+D S Sbjct: 157 EKLDSNWNISNGFNGDGLLWRLQNAIEGDSIAAALEQIRPVHPKYLSLKKALARYRDYES 216 Query: 91 RGGWPELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSV-------AFDAYVESA 141 GGWP +P P H G+ + LR RL I+G+ + + + A Sbjct: 217 DGGWPSIPAGPSIRHEGDRDERIPVLRRRLEITGEAVSLATVDTSFADSAMVYSKELVDA 276 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 V +FQ R+GL+ G+V TLEA+N+ R+ Q+++NL R + + + + +++VNI Sbjct: 277 VMVFQRRNGLEVDGVVGPRTLEALNISASQRVEQIRINLERYRWFITK-LEPTFIMVNIA 335 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ 261 +++ VENG + S VIVG +TP+ + + ++FNP W +P I++K+ + ++ Sbjct: 336 GFTIQYVENGALTWSSRVIVGEPFWKTPVFRADMRYLIFNPSWNVPPGILKKEALPSMKS 395 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRN 319 D YL N + +ID G V +DW +F + RQ PG NA+ K F +R+ Sbjct: 396 DGGYLSRNGLQVIDRNGNVVDPSSIDWAGYSAGSFPYRLRQPPGVRNALGRVKFMFPNRH 455 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 Y+HDTP LF+ R + GC+R+ N +DL LL WS IE + + KT Sbjct: 456 FVYLHDTPGKHLFDRSERAFSHGCIRLENPLDLAGVLL----GWSPEQIESALSSGKTRT 511 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 V L+ +PV +Y++A + D + FR+D+Y D + + + Sbjct: 512 VNLSRPIPVFLLYLTAVAEGD-EVLFRNDVYNRDAAVLNALDRSFPYK 558 >gi|323136642|ref|ZP_08071723.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322397959|gb|EFY00480.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 435 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 161/401 (40%), Positives = 256/401 (63%), Gaps = 9/401 (2%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTE 79 L +GLSL + D + R+D AR+ + S PI+S +T+A TE Sbjct: 9 LSLGLSLAAGAPAFAGSD----YDGQAEWAQRYDA-DARLTVS-RSTTPILSTQTVAATE 62 Query: 80 KAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 AI +++I++ GGWP++P L LG SS +V LR+RLI+SGD+ G S FD+YV Sbjct: 63 AAIEQFREIVANGGWPQVPAGHQLRLGVSSPAVSTLRKRLIVSGDIGHETGTSPIFDSYV 122 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 E+AV+ FQ RHG+ +G+V+ T A+NVP + R+RQL+ NL+R++ + +G RYV Sbjct: 123 EAAVRRFQARHGIIETGVVNQQTFAALNVPAETRLRQLETNLVRLRSF-SRDLGNRYVTA 181 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 NIPAA++E VENG+V VG++DRQ+P++ ++ ++ FNP+W +P S+I+KD++ Sbjct: 182 NIPAATVETVENGQVVTHHIAGVGKIDRQSPVMQTKAIQVNFNPFWTVPASVIRKDLIPK 241 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD-PGKINAMASTKIEFYS 317 ++ DP YL DN+I + +++G+E+ E+++W S + N+ FRQD G N++ +I+ + Sbjct: 242 MQADPNYLHDNHIRVYNKEGQELQPEQINWRSLDALNYKFRQDIGGDFNSLGVVRIDIAN 301 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 YMHDTP +F + RF +SGC+R++N+ D +LL++TP W R HI++V+ + + Sbjct: 302 PYGVYMHDTPAKGVFGDDFRFVSSGCIRLQNVRDYVAFLLRETPGWDRDHIDQVIASGER 361 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 VK+ VPV++VY++AW D + QFRDDIY D + V Sbjct: 362 VDVKITPPVPVYWVYVTAWGAPDGVTQFRDDIYQRDGLGVS 402 >gi|118588095|ref|ZP_01545505.1| hypothetical protein SIAM614_10978 [Stappia aggregata IAM 12614] gi|118439717|gb|EAV46348.1| hypothetical protein SIAM614_10978 [Stappia aggregata IAM 12614] Length = 535 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 124/412 (30%), Positives = 196/412 (47%), Gaps = 7/412 (1%) Query: 14 FFVYLILPMGLSLVEKPIHASVLDEIIN-ESYHSIVNDRFDNFLARVDMGIDSDIPIISK 72 L L + + +++ +N F+N VD G + Sbjct: 120 DLSVQFLRYATHLSSGRVQPNKVNKALNLFPDRPDPQTLFENAEQAVDFGAFLESLAPQT 179 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + A+ ++ +A Y++ + GG+ ++P L G S + LR RL + Sbjct: 180 DNYARLKRRLAQYREKAAAGGFAQVPEGEVLKPGMSDPRLTVLRTRLAEEDIPGAADHTG 239 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 +D + AVKLFQ HGL+ G++ T+ +N+P+ ++ Q+++N+ R ++ + Sbjct: 240 DIYDGALVEAVKLFQEYHGLETDGVIGKDTIAQLNIPIQEKLIQMELNMER-RRWMPDDP 298 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G YV VN+ +L+ V +GK + V+VG+ TP+ R+ + NPYW +P SI Sbjct: 299 GQFYVFVNLADQNLKVVRDGKTIHTARVVVGKPYHATPVFSDRLEYVEINPYWNVPYSIA 358 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMA 309 K+ + L+Q+P L +I + E G EV +V WNS NF F RQDPG NA+ Sbjct: 359 TKEYLPKLKQNPTALNGKSIRVFQE-GNEVAPTQVAWNSYSGGNFPFRLRQDPGADNALG 417 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F +R N Y+HDTP LF R + GC+RV + L LL D+ + H E Sbjct: 418 RIKFMFPNRFNIYIHDTPSKSLFARAERAFSHGCIRVSDPFALADVLLVDSDA-TPGHWE 476 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 + + T VK E+ VH Y++AW KD FR DIY D V + + Sbjct: 477 AIRDGGERTVVKPKVEIDVHLTYLTAWMNKDGSTHFRKDIYNRDKVLLEALR 528 >gi|297568521|ref|YP_003689865.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfurivibrio alkaliphilus AHT2] gi|296924436|gb|ADH85246.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfurivibrio alkaliphilus AHT2] Length = 557 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 130/361 (36%), Positives = 194/361 (53%), Gaps = 11/361 (3%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + +A Y+ + +GGWP++P L LG+ V LR+RL S DL + Sbjct: 193 YRELRATLADYRRLAEQGGWPQVPGSTTLRLGDRDHRVVTLRQRLHRSRDLSGTAARGDV 252 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 FD +E+AV+ FQ RHGL G+V TL A+NVP+++RIRQL++NL R + L ++ G Sbjct: 253 FDETLEAAVRSFQQRHGLLADGVVGRQTLAALNVPLEVRIRQLKLNLERWR-WLAEEFGR 311 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R++LVN A LE +E+ + L V+ G R+TP R+ ++ NPYW IP SI + Sbjct: 312 RHILVNTAANKLELIEDEQAILSMRVVTGTPYRRTPNFSDRVTYLVLNPYWNIPASIAAQ 371 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWN----SPEPPNFIFRQDPGKIN 306 D++ L+++P YL N I ++D + V + VDW P+ + RQDPG N Sbjct: 372 DILPELQENPDYLAQNGIKVLDGWNADSATVTPDTVDWERLRTRPQAFPYRLRQDPGPRN 431 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 + K F + + Y+HDTP LF+ R +SGC+R+ ++L LL TP S Sbjct: 432 PLGRIKFMFPNAYSVYLHDTPARELFHRQTRNFSSGCIRLERPLELAANLLAGTPLDSVG 491 Query: 367 HIEEVV--KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPE 424 + + +T V+L + VPVH VY +AW D +QFRDDIY D + + P Sbjct: 492 ALRRALFDETSHDRHVRLPSPVPVHLVYWTAWVAPDGSVQFRDDIYERDGLLAQALTTPP 551 Query: 425 D 425 Sbjct: 552 P 552 >gi|296444378|ref|ZP_06886343.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] gi|296258025|gb|EFH05087.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] Length = 443 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 167/416 (40%), Positives = 255/416 (61%), Gaps = 10/416 (2%) Query: 13 CFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK 72 F + SLV L + R+D R+ + S PI+S Sbjct: 8 AFAPLRASILAASLVSPA----ALAAGDGYGGQAEWAQRYDA-DPRLTVS-RSTTPILST 61 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 +T+A TE AI QDI++RGGWP +P L LG++S +V LR RL+ISGD+ G S Sbjct: 62 QTVAATEAAIQQMQDIVARGGWPMVPAGQQLKLGSNSPAVSILRRRLMISGDIGQDAGAS 121 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 FD+YVE+AV+ FQ RHG++ +G+V T AMNVP + R+RQL+ NL+R++ + + Sbjct: 122 PIFDSYVEAAVRRFQARHGVNATGVVAQQTFVAMNVPAEARMRQLETNLIRLRSF-SRDL 180 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G RYV NIPAAS+E VENG V VG++DRQ+P++ ++ +I FNP+W +P S+I Sbjct: 181 GNRYVTANIPAASVETVENGYVVTHHIAGVGKIDRQSPVMQTKAIQINFNPFWTVPASVI 240 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD-PGKINAMAS 310 +KD++ ++ DP YL N+I + ++ G E+ E+++WNS + N+ FRQD G N++ Sbjct: 241 RKDLIPKMQADPNYLTANHIRVYNKDGMELAPEQINWNSLDAMNYKFRQDIGGDFNSLGV 300 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 +I+ + YMHDTP +F + RF +SGC+R++N+ D WLLK+TP W R HI+E Sbjct: 301 VRIDIANPYGVYMHDTPAKGIFGDDFRFVSSGCIRLQNVRDYVAWLLKETPGWDRDHIDE 360 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG-IIPLPED 425 V+++ + V++ VPV++VY++AW+ D +IQFRDDIY D + + + P+ Sbjct: 361 VIRSGERVDVRITPAVPVYWVYVTAWAAPDGLIQFRDDIYQRDGLGLASAVSAPQP 416 >gi|237730888|ref|ZP_04561369.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226906427|gb|EEH92345.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 622 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 127/431 (29%), Positives = 199/431 (46%), Gaps = 45/431 (10%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K N+ LY Y +L PI +IN+ ++ N + Sbjct: 201 MMGYLHFIANIPVKGNRWLYSDKPY-------ALTTPPI------SVINQWQVALDNGQL 247 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSV 111 +F+A + A +++ + WP+L L G S + Sbjct: 248 TSFVASLAPQ---------HPQYAAMHESLLKL--VGDTRPWPQLTSTATLRPGEWSNDI 296 Query: 112 QRLRERLIISGDLDPSKGLSV-----AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 LRE L +G L+P+ S +D + AVK FQ GL G + +T + +N Sbjct: 297 PALREILRRTGMLEPAVSTSGKEGRGTYDRELVDAVKRFQTWQGLGADGAIGPATRDWLN 356 Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 V R L +N+ R++ L + ++VNIPA SL +NG L S VIVGR DR Sbjct: 357 VTPAQRAGVLALNIQRLRLLPSEL--STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDR 414 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVE 284 +TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + ++ + + Sbjct: 415 KTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKETIDPW 474 Query: 285 EVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 +VDW + N FR Q PG N++ K S + Y+HDTP LF R +SG Sbjct: 475 QVDWATITASNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPNHNLFQKDTRALSSG 534 Query: 343 CVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 CVRV +L LL+D W+ I + +K T V + +PV+ Y++A+ D Sbjct: 535 CVRVNKASELANMLLQDA-GWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTAFVGPDGR 593 Query: 403 IQFRDDIYGLD 413 Q+R DIY D Sbjct: 594 TQYRTDIYNYD 604 >gi|189501015|ref|YP_001960485.1| Peptidoglycan-binding domain 1 protein [Chlorobium phaeobacteroides BS1] gi|189496456|gb|ACE05004.1| Peptidoglycan-binding domain 1 protein [Chlorobium phaeobacteroides BS1] Length = 566 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 115/400 (28%), Positives = 202/400 (50%), Gaps = 25/400 (6%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE 96 D + +++ D +A++ + + ++ +A Y+ + + GGW Sbjct: 176 DGLAGMLRNALAGDSLAALIAQLRPK---------HPSYSSLKEGLARYRRLAADGGWGT 226 Query: 97 LPIRPL--HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY-------VESAVKLFQM 147 +P P +G + LR RL ISG+++ + ++ ++ AVK FQ Sbjct: 227 VPEGPTIKEIGQYDARIPALRGRLEISGEIEQLSKVDTSYADEAMRYSVGLQEAVKKFQN 286 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 RHGL G V TL A+NVPV+ R+ Q+++NL R + + QK+ Y+LVNI ++ Sbjct: 287 RHGLQEDGEVGPKTLRALNVPVEKRVEQIRINLERYRWFV-QKLEPTYLLVNIAGFNITY 345 Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 E G S VIVG +TP+ +++ ++FNP W +P I++K+ + +R+DP YL Sbjct: 346 FEQGAFKWGSRVIVGEPFWKTPVFKAQMQYVIFNPSWNVPPGILRKEALPAIRKDPGYLS 405 Query: 268 DNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTP 327 + + ++D G V V+W S ++ RQ PG NA+ K F +++ Y+HDTP Sbjct: 406 RHGLQVVDRNGNVVNPGSVNWAS-GAQSYRLRQPPGSRNALGRVKFMFPNKHLVYLHDTP 464 Query: 328 EPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVP 387 LF+ R + GC+R++N +DL LL WS + + V +T + L T++P Sbjct: 465 GKHLFDKSSRAFSHGCIRLQNPLDLAELLL----GWSGEKVRQTVSAGRTRRINLPTKLP 520 Query: 388 VHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 V +Y++A + +QF++D+Y D + + P + Sbjct: 521 VFLLYLTA-VAEGEEVQFKNDVYSRDAAVLQALNSPFPYK 559 >gi|163793880|ref|ZP_02187854.1| Peptidoglycan-binding domain 1 protein [alpha proteobacterium BAL199] gi|159180991|gb|EDP65508.1| Peptidoglycan-binding domain 1 protein [alpha proteobacterium BAL199] Length = 515 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 124/414 (29%), Positives = 198/414 (47%), Gaps = 13/414 (3%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD---MGIDSDIPIISKET 74 +L L + D + + H + + + +A D I+ P S Sbjct: 102 SLLRFLTDLRSGRLAPHEADPDLFQERHLVDGKQLLSQVADADDPVRAIEQAGP--SNPI 159 Query: 75 IAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + + +A Y+ + GGWP +P+ L G V +R RL++S L + Sbjct: 160 YHRLRRLLANYRGLAVHGGWPSVPVGDALKPGMRDPRVAAIRTRLMLSESLTLTSDDPEF 219 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 +D A++ FQ RHGL+ G+V + TL A+NVP++ RI Q+ VN+ R + + + G Sbjct: 220 YDDGFGLAMRGFQRRHGLEDDGVVGTRTLAALNVPIEHRIEQIVVNMERFR-WMPDEFGD 278 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +V VN+ L+ V G V + V+VGR R+TP+ RI + NP W +P I + Sbjct: 279 DHVFVNLADFMLDYVRRGLVAMSMRVVVGRQYRETPVFSDRIRYLELNPTWTVPAKIASE 338 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQDPGKINAM 308 D+++ +R +P YL + + VDW+S F + RQ PG+ NA+ Sbjct: 339 DLLSKIRANPSYLSSAGFEVFAGSRDNATLIDPASVDWSSLAKGRFPYTLRQQPGRQNAL 398 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K F +R + Y+HDTP LF VR +SGC+R+ +DL LL I Sbjct: 399 GRVKFMFPNRFDIYLHDTPARELFRRSVRTFSSGCIRLEKPLDLASRLLV-ADGQDPDRI 457 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 V+++ KTT + L V VH Y++AW + ++FRDD+YG D + + L Sbjct: 458 GSVLESAKTTRINLREPVAVHLTYLTAWVGEGGTVEFRDDVYGRDALLAKALGL 511 >gi|170751743|ref|YP_001758003.1| peptidoglycan binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170658265|gb|ACB27320.1| Peptidoglycan-binding domain 1 protein [Methylobacterium radiotolerans JCM 2831] Length = 432 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 152/353 (43%), Positives = 233/353 (66%), Gaps = 4/353 (1%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLD 125 +PI+S +T+A TE+ + Y+DI++RGGW ++ L +G+ +V +R+RLI++GDLD Sbjct: 56 VPILSPQTVASTEQMVERYKDIVARGGWRQVSGADHLRIGSRGPAVAAIRQRLIVTGDLD 115 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ G S +D+YV + VK FQ RHGL +G + +T +AMNVP D+R+RQL++N++R++ Sbjct: 116 PAAGSSGVYDSYVAAGVKRFQARHGLSQTGAMTMATQQAMNVPADVRLRQLEINVVRLRS 175 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 +G R+V+ NIPAA +E VENG+V VG++DRQ+PI++++ +I FNP W Sbjct: 176 Y-SGDLGRRFVITNIPAALVETVENGQVVTLHAAGVGKIDRQSPIMNTKATQINFNPTWT 234 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 +P SI++KD++ +++DP YL DN I ++ G EV + V+W S E + +RQD G Sbjct: 235 VPASIVKKDLIPKMQKDPNYLTDNKIRIL-SNGSEVSPKSVNWFSDEGTRYTYRQDSGAD 293 Query: 306 -NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 N+M +I + +MHDT +F + RF +SGCVRV+N+ + WLLKDTP W Sbjct: 294 FNSMGIVRINIPNPYGVFMHDTNTKGVFGDDFRFISSGCVRVQNVREYITWLLKDTPGWD 353 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 R +EE +++ K +A VPV++ YI+AWS D I+QFRDDIY D V+V Sbjct: 354 RQKVEEAIESGKRIDANIAQPVPVYWTYITAWSTPDGIVQFRDDIYKRDGVNV 406 >gi|145219195|ref|YP_001129904.1| peptidoglycan binding domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145205359|gb|ABP36402.1| Peptidoglycan-binding domain 1 protein [Chlorobium phaeovibrioides DSM 265] Length = 550 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 125/418 (29%), Positives = 207/418 (49%), Gaps = 14/418 (3%) Query: 18 LILPMGLSLVEKPIHASVLD-EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET-- 74 ++L + + + +D E ++ +++ R ++ + S + + + Sbjct: 124 ILLTDAMLSLATHLRYGKVDPERLDPNWNLTDPKRLAELQLQLQKALASGSILTALQKMR 183 Query: 75 -----IAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD-PS 127 +A+A Y+ I GGWP +P + G S V +R RL ++GD + Sbjct: 184 PEYFKYGLEREALARYRQIEQAGGWPVVPGGQAIRPGQSDPRVPLIRRRLSVTGDFEGRG 243 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 K SV D+ + +A++ FQ RH L G+ +TL AMNV R++QL+VNL R + + Sbjct: 244 KESSVVLDSELAAAIRNFQKRHALQADGVAGGATLAAMNVTARERVQQLRVNLERYRWFV 303 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 Q + +VLVNI SL+ V G + + VIVG+ R+TP+ + + ++FNP WV+P Sbjct: 304 GQ-LEPTFVLVNIAGFSLQYVHEGSLRWSTRVIVGQPYRKTPVFKADMYSVLFNPRWVVP 362 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKI 305 +I+ +D + +RQDP YL + +ID KG V ++WN+ F +R Q G Sbjct: 363 PTILAEDALPAIRQDPGYLSRKQLQVIDGKGSPVDPSSINWNAFGAAAFPYRLQQKAGDH 422 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 A+ K +R+ Y+HDTP LF R +SGC+RV N L +L D+ W+ Sbjct: 423 GALGRIKFVMPNRHIVYLHDTPTKDLFEKSSRTFSSGCIRVENPARLAELVLDDSLKWNG 482 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 I + T KT L +PV +Y++A + +D + F +DIY D + + P Sbjct: 483 GAIRSAIATGKTHSEPLPRRIPVFILYLTAVAERD-EVFFLEDIYDRDGAVLKALNAP 539 >gi|220925145|ref|YP_002500447.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219949752|gb|ACL60144.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 426 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 155/375 (41%), Positives = 238/375 (63%), Gaps = 6/375 (1%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRP 101 + +D+ A S+ PI+S +T+A TE+ I Y+DI++RGGW + Sbjct: 30 LTQAEWAQNYDS--ASTMRVQRSNTPILSPQTLAATEQMIERYRDIVARGGWQPVSGAER 87 Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G S +V LR+RLI SGDLDP+ G S +D+YVE+ V+ FQ RHGL+ +G ++ +T Sbjct: 88 LRVGARSPAVVALRQRLITSGDLDPAAGSSPVYDSYVEAGVRRFQARHGLNQTGAMNITT 147 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 ++AMNVP D+R+RQL++N +R++ +G RYV+VNIPAA +E VE V R V Sbjct: 148 VQAMNVPADVRLRQLELNAVRLRSY-SGNLGARYVIVNIPAALVETVEGDHVATRHAAGV 206 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 G++DRQ+PI++++I + FNPYW +P SII+KD++ ++++P YL DN I + D +E+ Sbjct: 207 GKIDRQSPIMNAKIQEVNFNPYWTVPASIIKKDLIPKMQKEPNYLTDNKIRIFDGD-REI 265 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKI-NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 +V+W S E + FRQDPG N+M +I + + YMHDTP +F + RF + Sbjct: 266 PPSQVNWRSDEATRYRFRQDPGVDLNSMGFVRINIPNPHGVYMHDTPAKGIFGDDFRFVS 325 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKD 400 SGCVRV+N+ D W+L+ TP + IE ++++ + + +PV++ YI+AWS D Sbjct: 326 SGCVRVQNVRDYVAWILQGTPQGNPETIEAIIQSGQRVDARPVAPIPVYWTYITAWSTPD 385 Query: 401 SIIQFRDDIYGLDNV 415 ++QFRDDIY D V Sbjct: 386 GLVQFRDDIYKRDGV 400 >gi|189347548|ref|YP_001944077.1| Peptidoglycan-binding domain 1 protein [Chlorobium limicola DSM 245] gi|189341695|gb|ACD91098.1| Peptidoglycan-binding domain 1 protein [Chlorobium limicola DSM 245] Length = 560 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 122/377 (32%), Positives = 193/377 (51%), Gaps = 6/377 (1%) Query: 51 RFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSV 109 R N LA D A+ +K +A Y+ I GGW ++P G Sbjct: 175 RLQNALAAGRPKAALDELRPKHSGYAELKKGLARYRVIARAGGWQKVPEGDSFREGVRDS 234 Query: 110 SVQRLRERLIISGDLDPS-KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V LR+RL SGDL S + A + +AVK FQ R+GL G+ ++T+ +N+ Sbjct: 235 RVPLLRKRLQQSGDLPGGVTDSSKVYTAAMANAVKRFQKRNGLSVDGVAGTATIGEINIS 294 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 R+ Q+++NL R + + + YVLVNI +L+ +ENG+ + VIVG+ R+T Sbjct: 295 AAERVDQIRLNLERYRWFVN-DLEPTYVLVNIAGFTLQYIENGRYRWGTRVIVGQPYRET 353 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P+ + + I+FNP WVIP +I+ +D + +R YL + +ID +G+ V V+W Sbjct: 354 PVFKADMQYIVFNPQWVIPPTILAEDALPAIRNSRSYLDRKKLRVIDSRGRVVDPASVNW 413 Query: 289 NSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + NF +R Q G A+ K +++ Y+HDTP LF R +SGC+RV Sbjct: 414 SGYSAANFPYRLQQTAGDHGALGRIKFMMPNKHVIYLHDTPTKNLFEKSERTFSSGCIRV 473 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 N +DL +L+D+ W++ I+ + T KT+ V L +PV +Y++A + IQFR Sbjct: 474 ENPLDLAQLVLQDSVKWNKTSIDSTIGTGKTSTVNLPKRIPVFLLYLTA-IAEGEEIQFR 532 Query: 407 DDIYGLDNVHVGIIPLP 423 D+Y D+ + P Sbjct: 533 RDVYNRDDRLRKALDSP 549 >gi|78186201|ref|YP_374244.1| hypothetical protein Plut_0313 [Chlorobium luteolum DSM 273] gi|78166103|gb|ABB23201.1| conserved hypothetical protein [Chlorobium luteolum DSM 273] Length = 546 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 128/362 (35%), Positives = 193/362 (53%), Gaps = 7/362 (1%) Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS- 127 + +A+A Y+ I + GGWP LP P L G S V LR RL I GDL+ + Sbjct: 179 LRHPKYRMLRRALARYRAIAASGGWPVLPPGPALTPGMQSSRVPALRRRLAIVGDLESTL 238 Query: 128 -KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + S FD + AV+ FQ RHG+ G+ T AMNVP +R+ L+VNL R + Sbjct: 239 IRDSSTVFDPELSLAVRRFQERHGITVDGVPGLETRSAMNVPASVRVECLKVNLERYRWF 298 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 L + YVLVNI SL+ VE+G+ + VIVGR R+TP+ + + ++FNP WV+ Sbjct: 299 LS-DLDSTYVLVNIAGFSLQYVEDGEFRWATRVIVGRPYRKTPVFKADMKAVVFNPRWVV 357 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGK 304 P +I+++D + +R+DP +L+ N+I +ID G+ V VDW++ F +R Q G Sbjct: 358 PPTILKQDALPAIRKDPGWLRANHISVIDRNGRTVDPISVDWSARSAATFPYRLQQAAGD 417 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 A+ K + Y+HDTP+ LF R +SGC+RV N L +L D+ WS Sbjct: 418 DGALGRLKFLLPNPYLVYLHDTPKRELFLQSARTFSSGCIRVENPRRLAQLVLADSVRWS 477 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPE 424 I+ + T +T + L VPV +Y++A + + + FR+D+Y D + + P Sbjct: 478 PEQIDAQIDTGRTRTISLPKPVPVLILYLAAMAEGE-RVLFRNDVYRRDTAVLQALQAPL 536 Query: 425 DH 426 H Sbjct: 537 PH 538 >gi|119357927|ref|YP_912571.1| peptidoglycan binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119355276|gb|ABL66147.1| Peptidoglycan-binding domain 1 protein [Chlorobium phaeobacteroides DSM 266] Length = 563 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 118/376 (31%), Positives = 194/376 (51%), Gaps = 8/376 (2%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQR 113 R+ +D P + +K +A Y+ I+ GGW ++ + + G+ V++ Sbjct: 184 AAERIAGLLDELSP--RHPGYERMKKGLAHYRVIVKTGGWQKVTEGKKIKEGDRDNRVRQ 241 Query: 114 LRERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 +R RL SGDL S S F + AV FQ R+GL G + T+ MN+ R Sbjct: 242 IRRRLQESGDLVFRSADTSRVFSKAMADAVVRFQKRNGLSVDGAAGAETIREMNISAAER 301 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 I Q+++N+ R + + + R VLVNIP +L+ ++NG+ + VIVG+ R+TP+ Sbjct: 302 IEQIRINMERYRWFI-GDLEQRAVLVNIPGFTLQYIDNGQPRWETRVIVGKTGRETPLFK 360 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 + + I+FNP WVIP +I+ KD + +R+ YL N+ +ID G+ V V+W+ Sbjct: 361 ADMQYIVFNPQWVIPPTILAKDALPGIRKSRSYLYSRNLKVIDRNGRVVDPATVNWSQYT 420 Query: 293 PPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 N +R Q G ++ K +++ Y+HDTP LF R +SGC+RV+N + Sbjct: 421 AANLPYRLQQTAGDHGSLGRIKFMLPNKHIVYLHDTPHKELFQKSTRNFSSGCIRVQNPL 480 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 +L +L+D+ W+ I +KT KT+ V L +PV+ +Y++A+ D I FR D+Y Sbjct: 481 ELAELVLQDSVKWNSDAINAAIKTGKTSNVNLPKHIPVYLLYLTAFPQDD-AIHFRGDVY 539 Query: 411 GLDNVHVGIIPLPEDH 426 DN + + Sbjct: 540 NRDNDVLKALNKSLPE 555 >gi|110596970|ref|ZP_01385260.1| Peptidoglycan-binding domain 1 [Chlorobium ferrooxidans DSM 13031] gi|110341657|gb|EAT60117.1| Peptidoglycan-binding domain 1 [Chlorobium ferrooxidans DSM 13031] Length = 560 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 125/398 (31%), Positives = 203/398 (51%), Gaps = 6/398 (1%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDIL 89 P+ I + + + R N + + + Q K + + + Sbjct: 161 PVSLDPNWNINDFHRSTAMEFRLQNAVTAERIAGVLAELRPQRPEYLQLRKGLIRDRALA 220 Query: 90 SRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDP-SKGLSVAFDAYVESAVKLFQM 147 GGWP +P + L G + V LR+RL++SGD+ + S +D + AVK FQ Sbjct: 221 KEGGWPVVPDLTGLKEGATDNRVLPLRKRLVVSGDMTAVANDTSRIYDRRMVEAVKRFQK 280 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 R+G+ G+ +T AMN+PV+ RI Q+++NL R + + + YVLVNI SL Sbjct: 281 RNGMVADGVPGPATFRAMNLPVERRIEQIRINLERCRWFMN-DLEPTYVLVNIAEFSLRY 339 Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 VE+G+ + VIVG+ R+TP+ + + I+FNP WV+P +I+ KD++ +R++ YL Sbjct: 340 VEHGRNRWGTRVIVGQPYRETPVFKADMQYIIFNPRWVVPPTILAKDVLPAIRKNSSYLS 399 Query: 268 DNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHD 325 ++++D G V V+W+ NF +R Q G A+ K +R+ Y+HD Sbjct: 400 RKKLNILDRNGTVVNPASVNWSQYTGANFPYRLQQTAGDHGALGRIKFMLPNRHTVYLHD 459 Query: 326 TPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATE 385 TP LF R +SGC+RV N +L +L+D+ WSR I+ + T KT V L Sbjct: 460 TPTKDLFEKSSRTFSSGCIRVENPQELARLVLQDSLKWSRERIQAAINTGKTATVYLPKR 519 Query: 386 VPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 +PV +Y++A++ D I F DD+Y D+ + + P Sbjct: 520 IPVFILYLTAFAEGD-EIVFLDDVYNRDSAVLKALDKP 556 >gi|188580628|ref|YP_001924073.1| peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] gi|179344126|gb|ACB79538.1| Peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] Length = 434 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 149/355 (41%), Positives = 228/355 (64%), Gaps = 4/355 (1%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGD 123 S PI+S +TIA TE + Y+ I+SRGGW + L +G+ +V +R+RLI++GD Sbjct: 54 SSTPILSPDTIAATEAMVEKYRAIVSRGGWQAVTGAAGLRVGSRGPAVAAVRQRLIVTGD 113 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 LD + G + +D+YV + VK FQ RHGL +G + +T AMNVP D+R+RQL+ N++R+ Sbjct: 114 LDATAGGAGVYDSYVAAGVKRFQARHGLSQTGQMSPATQAAMNVPADVRLRQLETNVIRL 173 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + +G R+V+ NIPAA ++ VENG+V VG++DRQ+PI++++ I FNP Sbjct: 174 RSY-SGDLGRRFVITNIPAALVQTVENGQVVTLHAAGVGKIDRQSPIMNAKAVEINFNPT 232 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +P SI++KD++ +++DP YL DN I ++ G+E+ V+WNS E + +RQD G Sbjct: 233 WTVPASIVRKDLIPKMQKDPNYLTDNKIRILSG-GQEISPRSVNWNSDEGTRYTYRQDSG 291 Query: 304 KI-NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 N+M +I + + +MHDT +F + RF +SGCVRV+N+ + WLLKDTP Sbjct: 292 ADFNSMGVVRINIPNPHGVFMHDTNSRGVFGDDFRFISSGCVRVQNVREYITWLLKDTPG 351 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 W R H+E+ V++ + +L VPV++ YI+AW+ D +QFRDDIY D V+V Sbjct: 352 WDRAHVEQAVESGQRIDARLTQPVPVYWTYITAWATPDGTVQFRDDIYKRDGVNV 406 >gi|304393662|ref|ZP_07375590.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] gi|303294669|gb|EFL89041.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] Length = 527 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 107/407 (26%), Positives = 184/407 (45%), Gaps = 7/407 (1%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTE 79 L +GL L SV D I ++ + Q Sbjct: 121 LKLGLDLYSGFTTPSVSDPNIVIKRKKRDATQWLEGATATGVSAMLTTLRPRHPQYGQLR 180 Query: 80 KAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + +A Y+ +++RGGW + L G + V +R+ L G + +D + Sbjct: 181 QMLAGYRSLMARGGWQPITEGITLKPGMTDARVNEMRQNLAARGYDVRGVEFADLYDEGL 240 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 AVK FQ RHGL G+ ++ A++V R+ Q+ +NL R + L + +G +VLV Sbjct: 241 VDAVKHFQKRHGLASDGVAGPASFRALSVTAAQRVDQIAINLERWR-WLPRDLGKAHVLV 299 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 N + + ++ + VIVG+ Q+P+ S I+ FNP W +P SI K+M+ Sbjct: 300 NQAGFEMFTMNGTEIYDKRRVIVGKPFHQSPMFSSSISYAEFNPTWTVPLSIAGKEMLPK 359 Query: 259 LRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKI 313 +R +P YL + N + G ++ VDW++ F +R Q+PG NA+ K Sbjct: 360 IRNNPAYLVEKNYSLYSGWGNNSQKLNPYAVDWSAVSAKRFPYRIVQEPGPRNALGQVKF 419 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 F ++ + Y+HDTP LF+ R + GC+RV +D L + + + +++ Sbjct: 420 IFPNKFSVYLHDTPSRNLFSRTGRAFSHGCIRVDKPLDFARKLYELQGGMNPSQVTPIIE 479 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 ++K V ++PVH Y +AW +D + F +D+Y D + + Sbjct: 480 SKKRKRVNFKRKMPVHLAYFTAWINEDGVPLFYEDVYKRDKLVRKFL 526 >gi|328544358|ref|YP_004304467.1| peptidoglycan binding domain protein [polymorphum gilvum SL003B-26A1] gi|326414100|gb|ADZ71163.1| Putative peptidoglycan binding domain protein [Polymorphum gilvum SL003B-26A1] Length = 543 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 119/405 (29%), Positives = 183/405 (45%), Gaps = 7/405 (1%) Query: 23 GLSLVEKPIHASVLDEIIN-ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 LV + + +++ +N + D + D G D + A+ ++A Sbjct: 137 ATHLVSGRVQPNAVNKALNIFPHVPDAGDLLEAVAEAPDFGAFLDGLSPNTPNYARLKQA 196 Query: 82 IAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 +A Y+ + GG+ +P L G S + LR R+ L P +D + Sbjct: 197 LAAYRAKAAAGGFTPVPDGAVLKPGMSDPRLDVLRRRMEQQDYLAPGAHAGDVYDGALVE 256 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AVK FQ HGL G+V TL MNVP+ R+ Q+++N+ R ++ + +G YV VN+ Sbjct: 257 AVKTFQDYHGLAVDGVVGKDTLAEMNVPIGRRLIQMELNMER-RRWMPDDLGEAYVFVNL 315 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 +L+ V +GK + V+VG+ TP+ + + NPYW +P SI + + L Sbjct: 316 ADQNLKVVRDGKTVHTARVVVGKPYHATPVFSKDMTYVEVNPYWNVPPSIATNEYLPKLI 375 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSR 318 +P+ L NI + EV ++ W S F F RQDPG NA+ K F + Sbjct: 376 SNPRALDGQNIRVFSGD-AEVSPHQIAWASYSGGPFPFKLRQDPGDGNALGRIKFMFPNE 434 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 N Y+HDTP LF R + GC+RV + L LL D R ++ + Sbjct: 435 FNIYIHDTPSRALFERAQRSFSHGCIRVSDPFALAEVLLADQ-GLDRAALDRAKASGDRQ 493 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 + L +PVH Y++AW KD FR DIYG D V + Sbjct: 494 VITLRRPIPVHLTYLTAWMNKDGSTHFRKDIYGRDEVLQKALARA 538 >gi|83647078|ref|YP_435513.1| hypothetical protein HCH_04383 [Hahella chejuensis KCTC 2396] gi|83635121|gb|ABC31088.1| uncharacterized protein conserved in bacteria [Hahella chejuensis KCTC 2396] Length = 560 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 114/386 (29%), Positives = 188/386 (48%), Gaps = 14/386 (3%) Query: 41 NESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR 100 E + R LA + D + + + E + + ++ ++GGWP + Sbjct: 156 EERTTGELAPRLYQALAEDRLLEDMNAMVPTPEVYKGLSQLLTDLRETEAQGGWPMVSYG 215 Query: 101 P-LHLGNSSVSVQRLRERLIISGDLDPSK------GLSVAFDAYVESAVKLFQMRHGLDP 153 P L G S V LR RLI SGD++ FD + AV+ FQ RHGL P Sbjct: 216 PTLRPGQSDSRVIELRRRLIASGDMERPVIDTSEGDDETLFDEGLVKAVRFFQERHGLKP 275 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 +V TL +N P+ RI Q++ NL R ++ +G RYV+VNI L+ V++G+ Sbjct: 276 DAIVGKETLAMLNTPISERIEQVRSNLER-RRWTPTNLGDRYVVVNIADYRLDLVDHGRT 334 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 L V+VG+ R+TP + ++ NP W +P I ++DM+ +DP+++ + Sbjct: 335 ELSMRVVVGKPYRRTPAFSGLMTYLVVNPLWEVPTQIAEEDMLERFIEDPEFINKMGFRV 394 Query: 274 IDEKGKE---VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 G+E + E ++W + F +R Q G +NA+ K F + N Y+HDTP Sbjct: 395 YKGWGREEAALDPETINWEEVKGGKFPYRLQQAAGPMNALGRIKFMFPNEFNVYLHDTPS 454 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGC+R+ ++L L+ + + +++++ + + T ++L VPV Sbjct: 455 RSLFYKSQRAFSSGCIRLERPLELAAALIG-SKRKTGIELDKILASGEPTTLRLPRPVPV 513 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDN 414 H Y +AW + QFR D+YG D Sbjct: 514 HLQYWTAWMDDSGVAQFRKDVYGRDA 539 >gi|240137931|ref|YP_002962403.1| putative Peptidoglycan-binding protein [Methylobacterium extorquens AM1] gi|240007900|gb|ACS39126.1| putative Peptidoglycan-binding protein [Methylobacterium extorquens AM1] Length = 434 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 147/355 (41%), Positives = 226/355 (63%), Gaps = 4/355 (1%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGD 123 S PI+S +TIA TE Y+ I+SRGGW + L +G+ +V +R+RLI++GD Sbjct: 54 SSTPILSPDTIAATESMAEKYRAIVSRGGWQNVSGAAGLRVGSRGPAVAAVRQRLIVTGD 113 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 LD + G + +D+YV + VK FQ RHGL +G + +T AMNVP ++R+RQL+ N++R+ Sbjct: 114 LDATAGGAGVYDSYVAAGVKRFQARHGLSQTGQMSPATQAAMNVPAEVRLRQLETNVIRL 173 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + +G R+V+ NIPAA ++ VENG+V VG++DRQ+PI++++ +I FNP Sbjct: 174 RSY-SGDLGRRFVITNIPAALVQTVENGQVVTLHAAGVGKIDRQSPIMNTKATQINFNPT 232 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +P SI++KD++ +++DP YL DN I ++ G+E+ V+WNS E + +RQD G Sbjct: 233 WTVPASIVRKDLIPKMQKDPNYLTDNKIRILSG-GQEISPRSVNWNSDEGTRYTYRQDSG 291 Query: 304 KI-NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 N+M +I + + +MHDT +F + RF +SGCVRV+N+ + WLLKDTP Sbjct: 292 ADFNSMGVVRINIPNAHGVFMHDTNSRGVFGDDFRFISSGCVRVQNVREYITWLLKDTPG 351 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 W R +E+ V++ + L VPV++ YI+AW+ D +QFRDDIY D V+V Sbjct: 352 WDRTRVEQAVESGQRIDATLTQPVPVYWTYITAWATPDGTVQFRDDIYKRDGVNV 406 >gi|163850806|ref|YP_001638849.1| peptidoglycan binding domain-containing protein [Methylobacterium extorquens PA1] gi|218529626|ref|YP_002420442.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|254560490|ref|YP_003067585.1| peptidoglycan-binding protein [Methylobacterium extorquens DM4] gi|163662411|gb|ABY29778.1| Peptidoglycan-binding domain 1 protein [Methylobacterium extorquens PA1] gi|218521929|gb|ACK82514.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|254267768|emb|CAX23615.1| putative Peptidoglycan-binding protein [Methylobacterium extorquens DM4] Length = 434 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 147/355 (41%), Positives = 226/355 (63%), Gaps = 4/355 (1%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGD 123 S PI+S +TIA TE Y+ I+SRGGW + L +G+ +V +R+RLI++GD Sbjct: 54 SSTPILSPDTIAATESMAEKYRAIVSRGGWQNVSGAAGLRVGSRGPAVAAVRQRLIVTGD 113 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 LD + G + +D+YV + VK FQ RHGL +G + +T AMNVP ++R+RQL+ N++R+ Sbjct: 114 LDATAGGAGVYDSYVAAGVKRFQARHGLSQTGQMSPATQAAMNVPAEVRLRQLETNVIRL 173 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + +G R+V+ NIPAA ++ VENG+V VG++DRQ+PI++++ +I FNP Sbjct: 174 RSY-SGDLGRRFVITNIPAALVQTVENGQVVTLHAAGVGKIDRQSPIMNTKATQINFNPT 232 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +P SI++KD++ +++DP YL DN I ++ G+E+ V+WNS E + +RQD G Sbjct: 233 WTVPASIVRKDLIPKMQKDPNYLTDNKIRILSG-GQEISPRSVNWNSDEGTRYTYRQDSG 291 Query: 304 KI-NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 N+M +I + + +MHDT +F + RF +SGCVRV+N+ + WLLKDTP Sbjct: 292 ADFNSMGVVRINIPNAHGVFMHDTNSRGVFGDDFRFISSGCVRVQNVREYITWLLKDTPG 351 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 W R +E+ V++ + L VPV++ YI+AW+ D +QFRDDIY D V+V Sbjct: 352 WDRTRVEQAVESGQRIDATLTQPVPVYWTYITAWATPDGTVQFRDDIYKRDGVNV 406 >gi|170741295|ref|YP_001769950.1| peptidoglycan binding domain-containing protein [Methylobacterium sp. 4-46] gi|168195569|gb|ACA17516.1| Peptidoglycan-binding domain 1 protein [Methylobacterium sp. 4-46] Length = 426 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 155/375 (41%), Positives = 240/375 (64%), Gaps = 6/375 (1%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRP 101 + +D+ A S+ PI+S +T+A TE+ I Y+DI++RGGW + Sbjct: 30 LAQAEWAQNYDS--AATMRVQRSNTPILSPQTLAATEQMIERYRDIVARGGWQPVSGADR 87 Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G S +V LR+RLI+SGDLDP+ G S +D+YVE+ V+ FQ RHGL+ +G ++ +T Sbjct: 88 LRVGTKSPAVVALRQRLIVSGDLDPAAGSSPIYDSYVEAGVRRFQARHGLNETGAMNLTT 147 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 ++AMNVP D+R+RQL++N +R++ +G RYV+VNIPAA +E VE V R V Sbjct: 148 VQAMNVPADVRLRQLELNAVRLRSY-SGNLGARYVIVNIPAALVETVEGDHVATRHAAGV 206 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 G++DRQ+PI++++I + FNPYW +P SII+KD++ ++++P YL DN I + D + +E+ Sbjct: 207 GKIDRQSPIMNAKIQEVNFNPYWTVPASIIKKDLIPKMQKEPNYLTDNKIRIFDGE-REI 265 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKI-NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 +V+W S E + FRQDPG N+M +I + + YMHDTP +F + RF + Sbjct: 266 APSQVNWRSDEATRYRFRQDPGVDLNSMGFVRINIPNPHGVYMHDTPAKGIFGDDFRFVS 325 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKD 400 SGCVRV+N+ D W+L+ TP + IE ++++ + + +PV++ YI+AWS D Sbjct: 326 SGCVRVQNVRDYVAWILQGTPQGNPETIEAIIQSGQRVDARPLAPIPVYWTYITAWSTPD 385 Query: 401 SIIQFRDDIYGLDNV 415 ++QFRDDIY D V Sbjct: 386 GLVQFRDDIYKRDGV 400 >gi|283833784|ref|ZP_06353525.1| putative periplasmic protein [Citrobacter youngae ATCC 29220] gi|291070449|gb|EFE08558.1| putative periplasmic protein [Citrobacter youngae ATCC 29220] Length = 583 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 124/431 (28%), Positives = 200/431 (46%), Gaps = 45/431 (10%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 ++GYL K N LY Y++ +S +IN+ ++ N + Sbjct: 162 LMGYLHFIANIPVKGNHWLYSNKPYVLATPPIS-------------VINQWQVALDNGQL 208 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSV 111 +F+A + A +++ + + WP+L L G S + Sbjct: 209 TSFIAGLAPQ---------HPQYAAMHESL--LKLVSDTRPWPQLTSTSTLRPGEWSNDI 257 Query: 112 QRLRERLIISGDLD-----PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 LRE L +G L+ +K A+ + + AVK FQ GL G + +T + +N Sbjct: 258 PALREILRRTGMLESVVSTAAKEGRSAYGSELVEAVKRFQTWQGLGADGAIGPATRDWLN 317 Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 V R L +N+ R++ LL + ++VNIPA SL +NG L S VIVGR DR Sbjct: 318 VTPAQRAGVLALNIQRLR-LLPGDLS-TGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDR 375 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVE 284 +TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + ++ + + Sbjct: 376 KTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKETIDPW 435 Query: 285 EVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 +VDW + N FR Q PG N++ K S + Y+HDTP LF R +SG Sbjct: 436 QVDWATITASNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPNHNLFQKDTRALSSG 495 Query: 343 CVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 CVRV +L LL+D W+ I + +K T V + +PV+ Y++A+ D Sbjct: 496 CVRVNKASELANMLLQDA-GWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTAFVGADGR 554 Query: 403 IQFRDDIYGLD 413 Q+R DIY D Sbjct: 555 TQYRTDIYNYD 565 >gi|309389689|gb|ADO77569.1| ErfK/YbiS/YcfS/YnhG family protein [Halanaerobium praevalens DSM 2228] Length = 546 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 121/409 (29%), Positives = 206/409 (50%), Gaps = 14/409 (3%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFL---ARVDMGIDSDIPIISKETIA 76 L + + I+A ++ E N S+ + + N L ++ ++S++P + Sbjct: 133 LDLASDYLNGKINAEIIIEDNNYQADSLQSKKLLNALLAKENIEESLNSNLP--KTKAYQ 190 Query: 77 QTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSV-AF 134 + + + +Y+D WP++ + L + V V+ LR+ L L + F Sbjct: 191 KLREKLFYYRDSGQINAWPQIKGKQILTKNSKGVRVKELRQNLKAKNYLTENNSKQDYIF 250 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 ++ AV FQ+ +GL P G+V TL+A+N+P+ RI+QL VN+ R + L + +G R Sbjct: 251 TEQLKEAVMKFQVDYGLTPDGVVGPKTLKALNIPLSERIKQLIVNMERWR-WLPENLGDR 309 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y+ VNI L+ E + + IVG+ R TP+ I ++ NPYW +P +I +D Sbjct: 310 YIYVNIANYKLKLYEEQQKIMEMKTIVGKKQRSTPVFSDEIKYLVLNPYWYVPHTIAVED 369 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGK----EVFVEEVDWNSPEPPNFIF--RQDPGKINAM 308 + L+++D YL+D N + G ++ +VDW NF + RQ+PG NA+ Sbjct: 370 KLPLIKKDLNYLEDKNYSLFKYIGNNRLEKIDPTKVDWTKITKDNFNYLLRQNPGDQNAL 429 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K F ++ + Y+HDTP LF+ R +SGC+R+ I+L +LL D W R +I Sbjct: 430 GRIKFMFPNKFSIYLHDTPSQYLFSEQERSFSSGCIRIEKPINLAEYLLIDQEKWGRENI 489 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 E +K K V L + ++ Y +AW K++ + FR+DIY D + Sbjct: 490 EAAIKKDKEKIVYLKKPIKIYLQYNTAWVDKENNLNFREDIYNRDQKII 538 >gi|161503876|ref|YP_001570988.1| hypothetical protein SARI_01965 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865223|gb|ABX21846.1| hypothetical protein SARI_01965 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 644 Score = 436 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 127/468 (27%), Positives = 199/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K N+ LY Y++ +S +IN+ ++ + Sbjct: 186 MMGYLHFIANIPVKGNRWLYSNKPYVLATPPVS-------------VINQWQIALEEGQL 232 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A +A+ + WP+L L G S V Sbjct: 233 PTFVASLAPQ---------NPQYAPMHEALLKL--VADSRPWPQLTNTATLRPGQWSNDV 281 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 282 PALREILQRTGMLDGGPKIALPGDDTSDSAVVSPSAVEVETLVAQPVAEQTARRSKPAPA 341 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 342 VRAAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAE 401 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 402 L--STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 459 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG Sbjct: 460 LARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAR 519 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 520 NSLGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKAPELANMLLQDA-GWND 578 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 579 ARISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 626 >gi|77918680|ref|YP_356495.1| hypothetical protein Pcar_1075 [Pelobacter carbinolicus DSM 2380] gi|77544763|gb|ABA88325.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380] Length = 598 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 111/359 (30%), Positives = 185/359 (51%), Gaps = 9/359 (2%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS-V 132 + +A Y+ + GGWP L P + G+ + LR L++ GDL+ S+ S Sbjct: 213 YQRLAVYLAHYRQLALGGGWPVLADGPPVRPGDRDARLPALRRFLVLVGDLESSRQSSGW 272 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 DA +A+K FQ+RHGL G++ TL +NVPV RI QL +NL R + +Q G Sbjct: 273 RMDAVTVAALKRFQVRHGLRADGVLGKDTLAQINVPVGRRIEQLGLNLERER-WPKQDAG 331 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 RY+ V+I +L V+ G+ +R V+VG R+TP+ + + ++F PYW +P +I++ Sbjct: 332 DRYLQVDITDFTLTLVDGGREIMRMPVVVGTSFRRTPVFSALMTYLVFAPYWTVPPTILE 391 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEK---GKEVFVEEVDWNSPEPPNFI--FRQDPGKINA 307 +D + +++ +P YL ++ ++ + + +DW + +F RQ PG N Sbjct: 392 QDKLPVIKANPDYLDSHHYEIVAWGKDPNRTIDAASIDWKTITAKSFPGMLRQKPGPWNP 451 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K F + + Y+HDTP LF R +SGC+R+ ++L ++LL W Sbjct: 452 LGKVKFMFPNAYHVYLHDTPAQYLFAKQQRTFSSGCIRIARPLELAIYLLDGQKGWDSER 511 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP-LPED 425 I++ + K V+L +PVH +Y +AW +QFR+D+Y D + PE Sbjct: 512 IKKEMAASKPYTVRLKNPIPVHILYRTAWVDVQGRLQFRNDVYERDQELQAALKQRPES 570 >gi|295096375|emb|CBK85465.1| Uncharacterized protein conserved in bacteria [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 607 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 132/471 (28%), Positives = 206/471 (43%), Gaps = 70/471 (14%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ N+ LY Y + LS +IN+ S+ N Sbjct: 162 MMGYLQFVAGISVNGNRWLYSSKPYKLATPALS-------------VINQWQLSLDNGEL 208 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A +++ + + WP+L L G S V Sbjct: 209 PRFIASLAPA---------HPQYATMHQSL--LELVADSRPWPQLRGTTTLRPGQWSSDV 257 Query: 112 QRLRERLIISGDLDPSKGL-----------------------------SVAFDAYVESAV 142 +RE + SG LD + A+D + +AV Sbjct: 258 PAIREIMKRSGILDSGPKIALPGDETQNAVVSPSAPVKEKTAVALSNKPAAYDRELVAAV 317 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 K FQ GL G++ ST + +NV R L +N+ R++ LL + ++VNIPA Sbjct: 318 KQFQAAQGLGADGVIGPSTRDWLNVSPAQRAGVLALNIQRLR-LLPGTLS-TGIMVNIPA 375 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 SL ++G L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + D Sbjct: 376 YSLVYYQDGSEVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWND 435 Query: 263 PQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSR 318 P YL+ +N ++ + + VDW++ P N FR Q PG N++ K S Sbjct: 436 PGYLERHNYTVMRGWNSKEAIDPWMVDWSTITPSNLPFRFQQAPGAHNSLGRYKFNMPSS 495 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 + Y+HDTP LF R +SGCVRV +L LL+D W+ I + +K T Sbjct: 496 DAIYLHDTPNHNLFQKDARALSSGCVRVNKASELANMLLQDA-GWNDTRISDALKQGDTR 554 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD-NVHVGIIPLPEDHPI 428 V + +PV+ Y++A+ D Q+R DIY D G LP+ + Sbjct: 555 YVNIRHNIPVNLYYLTAFVGADGRTQYRTDIYNYDLTARSGAQILPKAEQL 605 >gi|308273623|emb|CBX30225.1| hypothetical protein N47_D30340 [uncultured Desulfobacterium sp.] Length = 564 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 120/424 (28%), Positives = 207/424 (48%), Gaps = 18/424 (4%) Query: 13 CFFVYLILPMGLSLVEKPIHASVL--DEIINESYHSIVNDRFDNFLARVDMGIDSDIPII 70 FF+Y L ++ + D I + +V D + Sbjct: 144 AFFLY-----ASHLTAGRVNPENIRTDWTIKTKHLDLVPILLDALAKGNISYALEKVNQQ 198 Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKG 129 S + + + A Y+ GGWP++P P + G+ + L RL ISGDL + Sbjct: 199 SPD-YQRLKIASQSYKKFSENGGWPQIPAGPKMKKGDRGARIAILHSRLQISGDLSKTDK 257 Query: 130 LSV-AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 F +E AV FQ RHGL G+V +TL +NV R +Q+ VN+ R++ L+ Sbjct: 258 KDPGVFGDILEKAVLRFQSRHGLTEDGIVGHATLYELNVSALARFKQIMVNMERLR-WLQ 316 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + G RY+ VNI L V+ L+ V+VG+ RQTP+ ++ ++ NP+W IP Sbjct: 317 RDFGPRYLFVNIADFKLSVVDENASILKMRVVVGKDYRQTPVFEGKMTYLVINPFWTIPP 376 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPNFIFR--QDPG 303 + ++D++ L+++D + +K I + + +E+ V+W NF ++ Q+PG Sbjct: 377 KLAEEDLLPLIKEDIEVIKRKKIRIYESWKENAREIDPGSVNWKMVNADNFSYKLVQEPG 436 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 +NA+ K F ++ + Y+HDTP LF+ R +SGC+R+ ++L +LL P W Sbjct: 437 PLNALGRIKFIFPNKFDIYLHDTPARNLFSREKRNFSSGCIRIEKPLELATYLLHGNPNW 496 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII--P 421 ++ + +V+ + +T V ++ + V +Y +AW + I+QFR+DIY D + Sbjct: 497 TKQKLLDVIDSHETQIVGISNPIAVKILYFTAWVDEQGIVQFRNDIYQRDKKLAKALEEK 556 Query: 422 LPED 425 P+D Sbjct: 557 PPQD 560 >gi|238920326|ref|YP_002933841.1| peptidoglycan-binding domain 1 protein [Edwardsiella ictaluri 93-146] gi|238869895|gb|ACR69606.1| peptidoglycan-binding domain 1 protein [Edwardsiella ictaluri 93-146] Length = 544 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 118/431 (27%), Positives = 191/431 (44%), Gaps = 42/431 (9%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ + LY Y + + LV+ ++ + Sbjct: 125 MMGYLQYVAGVTANGDAWLYGNKSYTLAAPPVGLVDN-------------WQRALRQGKL 171 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSV 111 F+ + S A+ + + WP++P P L G+SS +V Sbjct: 172 TVFIRSLAP---------SNPQYLAMRSALE--RLLADTTPWPQMPGGPTLRPGDSSPAV 220 Query: 112 QRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 LRE L+ SG L + G + + +AVK FQ GL P G++ T +NV Sbjct: 221 APLREILLRSGALPATDEGDGNVYTPALVAAVKRFQSGQGLTPDGVIGPRTYAWLNVTPS 280 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 +R L +N+ R++ L ++VNIP S+ GK L S VIVGR R+TP+ Sbjct: 281 MRASLLALNIQRLRLLPASV--YTGIMVNIPNYSMTYFREGKDVLSSRVIVGRPARKTPL 338 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVD 287 ++S +N ++ NP W +P ++++D++ +DP Y + + ++ + + +D Sbjct: 339 MNSELNNVVVNPPWNVPTKLVREDIVPKAMRDPGYFERHGYTLLSGWSGDVQVINPYMLD 398 Query: 288 WNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 W+S NF + RQ PG N++ K S++ Y+HDTP LFN +R +SGCVR Sbjct: 399 WSSVSARNFPYRVRQAPGAGNSLGRFKFNMPSQDAIYLHDTPNHALFNQDIRALSSGCVR 458 Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 + L LL D WS + ++ T V + +PV Y + W QF Sbjct: 459 INKASTLADMLLADA-GWSPERVASALQAGNTQYVPIRQRIPVRLYYQTVWVSDGGEPQF 517 Query: 406 RDDIYGLDNVH 416 R DIY D + Sbjct: 518 RTDIYNYDQLA 528 >gi|168243764|ref|ZP_02668696.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449643|ref|YP_002044987.1| hypothetical protein SeHA_C1093 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194407947|gb|ACF68166.1| YcbB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205337184|gb|EDZ23948.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 606 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 126/458 (27%), Positives = 195/458 (42%), Gaps = 72/458 (15%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLANTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLD--------------------------------PSKGLSVAFDAYVE 139 LRE L +G LD + A+D + Sbjct: 254 PALREILQRTGMLDGGPKIALPGDNTTDSAVVSPSAVVDEQTARRSKPAPAARAYDRELV 313 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 AVK FQ GL G++ +T +N+ R L +N+ R++ L + ++VN Sbjct: 314 EAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVN 371 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + Sbjct: 372 IPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKV 431 Query: 260 RQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEF 315 DP YL+ + ++ + + +VDW + P N FR Q PG N++ K Sbjct: 432 WNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNM 491 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 S + Y+HDTP LF R +SGCVRV +L LL+D W+ I +K Sbjct: 492 PSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQG 550 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 551 DTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 588 >gi|168466590|ref|ZP_02700452.1| YcbB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631019|gb|EDX49605.1| YcbB [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 614 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 127/466 (27%), Positives = 197/466 (42%), Gaps = 80/466 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLTNTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLD----------------------------------------PSKGLS 131 LRE L +G LD P+ + Sbjct: 254 PALREILQRTGMLDGGPKIALPGDNTADSAVVSPSAVVDETSVAHDEPTARRSKPAPSVR 313 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 314 AAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL- 372 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 373 -STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 431 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINA 307 +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG N+ Sbjct: 432 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 491 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 492 LGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 550 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 551 ISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 596 >gi|296103072|ref|YP_003613218.1| hypothetical protein ECL_02728 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057531|gb|ADF62269.1| hypothetical protein ECL_02728 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 607 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 131/471 (27%), Positives = 207/471 (43%), Gaps = 70/471 (14%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ N+ LY Y + LS +IN+ ++ N Sbjct: 162 MMGYLQFVAGIPVNGNRWLYSQKPYKLATPALS-------------VINQWQLALDNGDL 208 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A +++ + + WP++ L G S V Sbjct: 209 PRFIASLAPA---------HPQYATMHQSL--LELVADSRPWPQVRGTTTLRPGQWSSDV 257 Query: 112 QRLRERLIISGDLDPSKGL-----------------------------SVAFDAYVESAV 142 +RE + SG L+ + A+D + +AV Sbjct: 258 PAIREIMKRSGILESGPKIALPGDDTQSAVVSPSAPVKEKKAVAQSNKPAAYDRELVAAV 317 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 K FQ GL G++ ST + +NV R L +N+ R++ LL + ++VNIPA Sbjct: 318 KQFQAAQGLGADGVIGPSTRDWLNVSPAQRAGVLALNIQRLR-LLPGTLS-TGIMVNIPA 375 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + D Sbjct: 376 YSLVYYQNGSEVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWND 435 Query: 263 PQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSR 318 P YL+ +N +I + + VDW++ P N FR Q PG N++ K S Sbjct: 436 PGYLERHNYTVIRGWNSKETIDPWMVDWSTITPSNLPFRFQQAPGAHNSLGRYKFNMPSS 495 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 + Y+HDTP LF R +SGCVRV +L LL+D W+ I + +K T Sbjct: 496 DAIYLHDTPNHNLFQKDARALSSGCVRVNKASELANMLLQDA-GWNDTRISDALKQGDTR 554 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD-NVHVGIIPLPEDHPI 428 V + +PV+ Y++A+ +D Q+R DIY D G LP+ + Sbjct: 555 YVNIRHNIPVNLYYLTAFVGEDGRTQYRTDIYNYDLTARSGAQILPKAEQL 605 >gi|332558206|ref|ZP_08412528.1| peptidoglycan binding domain-containing protein [Rhodobacter sphaeroides WS8N] gi|332275918|gb|EGJ21233.1| peptidoglycan binding domain-containing protein [Rhodobacter sphaeroides WS8N] Length = 536 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 121/408 (29%), Positives = 194/408 (47%), Gaps = 13/408 (3%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDR-FDNFLARVDMGIDSDIPIISKETIAQ 77 +L L + +D I + + F A +DS P A+ Sbjct: 124 LLAWAHDLHGGALEPGKVDPGIKRAVKRLDPRSVLTAFEANPVHFLDSLAP--RGPDYAR 181 Query: 78 TEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 +A + ++ GGW +P L G + LR+RL+ G L S S +DA Sbjct: 182 LMRARLDLEATVAAGGWGAAVPAGKLKPGATGPGFLALRDRLMAMGYLGRSTAAS--YDA 239 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 V +AV+ FQ HGL P G+ T+ A+NV + R++ + V L R + L G R++ Sbjct: 240 EVAAAVRSFQTDHGLSPDGVAGEGTIAALNVAPEARLKSILVALERER-WLSIDRGERHI 298 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 VN+ S ++NGKV + ++G+ D++TP + ++ NP W +PRSI K+ Sbjct: 299 WVNLADFSTRLIDNGKVTFETRSVIGKDSPDQRTPEFSDEMEYMVINPSWHVPRSITTKE 358 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTK 312 + LL+++P ++ +ID +G+EV V++N+ NF F RQ P NA+ K Sbjct: 359 YLPLLQRNPN--AAGHLKLIDSRGREVSRGAVNFNAYNARNFPFSMRQPPSDGNALGLVK 416 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F ++ N Y+HDTP LF+ VR + GC+R+ D LL + + Sbjct: 417 FMFPNQWNIYLHDTPSKSLFDREVRAFSHGCIRLGRPFDFAYALLAAQTEDPEGLFQSHL 476 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + + + V+L VPVH VY +AW+ + +RDDIYG D V + Sbjct: 477 SSGRESVVRLEKPVPVHLVYFTAWAGPTGQMNYRDDIYGRDGVIFDAL 524 >gi|120555804|ref|YP_960155.1| peptidoglycan binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120325653|gb|ABM19968.1| Peptidoglycan-binding domain 1 protein [Marinobacter aquaeolei VT8] Length = 560 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 127/424 (29%), Positives = 206/424 (48%), Gaps = 25/424 (5%) Query: 18 LILPMGLSLVEKPIHASVLD-EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA 76 L+L L+ +H ++ I+ + + R + + + S T+ Sbjct: 122 LVLSDAFLLLASHLHHGKVNPTTIHAEWTANRQQR--EMQSVLSEALASGT---VYTTLQ 176 Query: 77 QTEKAIAFYQDILSR---------GGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLD- 125 + A Y ++ R WP + P + G++ + +R RL + GDL Sbjct: 177 DLKPRSAAYHQLVQRRKALGELISADWPAIVSGPSIRPGDTDNRIPDIRRRLALLGDLSG 236 Query: 126 --PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 P +D + +A+ LFQ RHGL+P G+V TL A+N+ RI +L NL R Sbjct: 237 DSPEASNHQHYDDALATAIPLFQARHGLEPDGIVGRDTLTALNLLPLERIYRLDANLERW 296 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + +G YV+VNI L VE+G+ R VIVGR RQTP+ RI ++FNP Sbjct: 297 R-WLPESLGETYVVVNIAGFELVLVESGEQVHRQRVIVGRPYRQTPVFSDRIRYLVFNPT 355 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPNFIFR- 299 W +PR ++ +D + ++R DP+YL+ + G EV E+DW NF ++ Sbjct: 356 WTVPRKLMIEDQLPIIRSDPEYLERLGFKVFRGWGANQSEVDPAEIDWTELSKNNFPYQL 415 Query: 300 -QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 Q PG NA+ K F ++ + Y+HDTP LF+ + R +SGC+R+ +L LL Sbjct: 416 IQQPGPQNALGQVKFMFPNQYDIYLHDTPAQSLFSRLERTLSSGCIRLERPFELAERLLA 475 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 +T W++ IE+ + T + V L+ VPV+ Y + W ++QFR+D+Y D + Sbjct: 476 NTNGWNKKRIEQTLATAEPATVVLSEPVPVYLQYWTTWIDPAGVLQFRNDVYDRDRRLLQ 535 Query: 419 IIPL 422 + Sbjct: 536 ALRA 539 >gi|260433724|ref|ZP_05787695.1| peptidoglycan-binding domain 1 [Silicibacter lacuscaerulensis ITI-1157] gi|260417552|gb|EEX10811.1| peptidoglycan-binding domain 1 [Silicibacter lacuscaerulensis ITI-1157] Length = 535 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 116/389 (29%), Positives = 192/389 (49%), Gaps = 11/389 (2%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW-P 95 D ++ + +D LA D + S + A + +A Q+++ GGW P Sbjct: 141 DGLVRQVQKRSGSDLLSALLAGTDGAAIERLAPQSSQYRALLKHKLAL-QELMRHGGWGP 199 Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 +P G S V +LR+RL+ G L P+ S +D+ +E+AV+ FQ HGL+P G Sbjct: 200 TVPKGKYEPGASGAGVLKLRDRLVAMGFLKPTA--SPEYDSAMEAAVRAFQRAHGLEPDG 257 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 + T+ +N R++ + V + R + L G R+VLVN S + V++G V Sbjct: 258 VAGEGTIAEINRSPTDRLKAVMVAMERER-WLPADRGQRHVLVNQADFSAKIVDDGNVTF 316 Query: 216 RSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 + ++G+ DR++P + ++ NP W +PRSII K+ + LR +P + ++ + Sbjct: 317 ETRAVIGKNTHDRRSPEFSDEMEHMVINPSWYVPRSIITKEYLPKLRANPNAV--RHLEI 374 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 D +G++V VD+N +F F RQ PG+ NA+ K F ++ N Y+HDTP+ L Sbjct: 375 TDSRGRQVNRAAVDFNQFSARSFPFAMRQPPGQSNALGLVKFMFPNKYNIYLHDTPQKSL 434 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 F VR + GC+R+ + LL + ++ T K T V L VPVH + Sbjct: 435 FAREVRAFSHGCIRLAQPFEFAYALLAPQEEDPKAFFHRILNTGKETKVDLEKPVPVHLI 494 Query: 392 YISAWSPKDSIIQFRDDIYGLDNVHVGII 420 Y +A+ +Q+R D+YG D + Sbjct: 495 YRTAYIGPKGDVQYRRDVYGRDAKIWEAL 523 >gi|99081059|ref|YP_613213.1| peptidoglycan binding domain-containing protein [Ruegeria sp. TM1040] gi|99037339|gb|ABF63951.1| Peptidoglycan-binding domain 1 [Ruegeria sp. TM1040] Length = 540 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 121/410 (29%), Positives = 201/410 (49%), Gaps = 13/410 (3%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 + L++ P+ +DE I H + RF +A + + Sbjct: 130 ATDLQTGLIDTPVR---IDEGIVREKHKVDATRFLEGIATDRPAAFLQDLVPTSSQYRAL 186 Query: 79 EKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 + + +L GGW +P+R + G++ SV LR RL+ G L P+ S +D Sbjct: 187 LREKMRLEALLQAGGWGATVPVRKIEPGDTGQSVLALRNRLVSMGYLAPTATRS--YDLD 244 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 VE AV+ FQ HGL+ G+ TL+ +N PV RI+ + V + R + L ++ GLR++L Sbjct: 245 VEDAVRRFQSEHGLEVDGVAGEGTLKELNRPVSDRIKSVLVAMERERWLTPER-GLRHIL 303 Query: 198 VNIPAASLEAVENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 VN+ S + ++ G++ + ++G + DR+TP ++ ++ NP W +PRSII K+ Sbjct: 304 VNLTDFSAKIMDEGEISFETRSVIGSTKSDRRTPEFSDEMDHMVINPSWYVPRSIITKEY 363 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKI 313 + L+ +P + I + D +G+ V VD++ +F F RQ P NA+ K Sbjct: 364 LPKLKNNPN--AHSYIEITDNRGRVVNRNNVDFSQFTARSFPFAMRQPPSSRNALGLVKF 421 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 F ++ N Y+HDTP+ LF VR + GCVR+ + LL + + V+ Sbjct: 422 MFPNKYNIYLHDTPQKHLFGREVRAFSHGCVRLHQPFEFAYELLTPQTENPKDYFHRVLN 481 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 + K T V L T+VPVH +Y +A+ +D +FR D+YG D + Sbjct: 482 SGKETKVPLETKVPVHLIYRTAFVSQDGRAEFRRDVYGRDAKIWSALERA 531 >gi|205360811|ref|ZP_02686636.2| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205346897|gb|EDZ33528.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 640 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 127/468 (27%), Positives = 197/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 182 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 228 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 229 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLTNTATLRPGQWSNDV 277 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 278 PALREILQRTGMLDGGPKIALPGDNTADSAVVSPSAVVDETSVAQPVDEQTARRSKPAPA 337 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 338 VRAAYDNELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAE 397 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 398 L--STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 455 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG Sbjct: 456 LARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAH 515 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 516 NSLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWND 574 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 575 ARISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 622 >gi|301023047|ref|ZP_07186856.1| conserved hypothetical protein [Escherichia coli MS 69-1] gi|300397253|gb|EFJ80791.1| conserved hypothetical protein [Escherichia coli MS 69-1] Length = 615 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 131/468 (27%), Positives = 199/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ D+ Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKDQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|197266013|ref|ZP_03166087.1| YcbB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197244268|gb|EDY26888.1| YcbB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 614 Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 127/466 (27%), Positives = 197/466 (42%), Gaps = 80/466 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLANTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLD----------------------------------------PSKGLS 131 LRE L +G LD P+ + Sbjct: 254 PALREILQRTGMLDGGPKIALPGDNTADSSVVSPSAVVDETSVAHDEPTARRSKPAPAVR 313 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 314 AAYDNELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL- 372 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 373 -STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLA 431 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINA 307 +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG N+ Sbjct: 432 RKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNS 491 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 492 LGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDAR 550 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 551 ISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 596 >gi|283784752|ref|YP_003364617.1| hypothetical protein ROD_09941 [Citrobacter rodentium ICC168] gi|282948206|emb|CBG87773.1| putative exported protein [Citrobacter rodentium ICC168] Length = 624 Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 130/455 (28%), Positives = 199/455 (43%), Gaps = 69/455 (15%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ N+ LY Y + LS +IN+ ++ N Sbjct: 179 MMGYLQFVAGIPVNGNRWLYSNKPYKLATPALS-------------VINQWQLALDNGEL 225 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSV 111 F+A + A+ +++ + WP+L L G S V Sbjct: 226 PRFIASLAPA---------HPQYARMHQSLLAL--VGDSRPWPQLRSAATLRPGQWSSDV 274 Query: 112 QRLRERLIISGDLDPSKGL-----------------------------SVAFDAYVESAV 142 LRE L SG LD + A+D + +AV Sbjct: 275 PALREILKRSGMLDGGPKIALPGDDAQNVVVSPSAPVKEKQAAVVSNKPAAYDRELVAAV 334 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 K FQ GL G + +T MNV R L +N+ R++ L + ++VNIPA Sbjct: 335 KQFQAWQGLGADGAIGPATRYWMNVTPAQRAGGLALNIQRLRLLPAEL--STGIMVNIPA 392 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ L D Sbjct: 393 YSLVYYQNGSQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKLWND 452 Query: 263 PQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSR 318 P YL+ + ++ + + +VDW++ P N FR Q PG N++ K S Sbjct: 453 PGYLERHGYTVMRGWNSKDAIDPWQVDWSTITPSNLPFRFQQAPGAHNSLGRYKFNMPSS 512 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 + Y+HDTP LF+ R +SGCVRV +L LL+D W+ I + +K T Sbjct: 513 DAIYLHDTPNHTLFSKDARALSSGCVRVNKASELANMLLQDA-GWNDTRISDALKQGNTR 571 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 V + +PV+ Y++A+ D Q+R DIY D Sbjct: 572 YVTIRQTIPVNLYYLTAFVGADGRTQYRTDIYNYD 606 >gi|91210027|ref|YP_540013.1| hypothetical protein UTI89_C0997 [Escherichia coli UTI89] gi|117623143|ref|YP_852056.1| hypothetical protein APECO1_37 [Escherichia coli APEC O1] gi|218557830|ref|YP_002390743.1| hypothetical protein ECS88_0953 [Escherichia coli S88] gi|237707087|ref|ZP_04537568.1| YcbB [Escherichia sp. 3_2_53FAA] gi|91071601|gb|ABE06482.1| hypothetical protein YcbB [Escherichia coli UTI89] gi|115512267|gb|ABJ00342.1| YcbB [Escherichia coli APEC O1] gi|218364599|emb|CAR02285.1| putative exported enzyme [Escherichia coli S88] gi|226898297|gb|EEH84556.1| YcbB [Escherichia sp. 3_2_53FAA] gi|294493685|gb|ADE92441.1| putative peptidoglycan binding domain protein [Escherichia coli IHE3034] gi|307627648|gb|ADN71952.1| hypothetical protein UM146_12925 [Escherichia coli UM146] gi|315287548|gb|EFU46954.1| conserved hypothetical protein [Escherichia coli MS 110-3] gi|323953367|gb|EGB49233.1| ykud domain-containing protein [Escherichia coli H252] gi|323958230|gb|EGB53939.1| ykud domain-containing protein [Escherichia coli H263] Length = 615 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 199/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDQGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKLMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|56413956|ref|YP_151031.1| hypothetical protein SPA1803 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362879|ref|YP_002142516.1| hypothetical protein SSPA1676 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128213|gb|AAV77719.1| putative exported protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094356|emb|CAR59868.1| putative exported protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 615 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 127/467 (27%), Positives = 196/467 (41%), Gaps = 81/467 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLANTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLD-----------------------------------------PSKGL 130 LRE L +G LD S Sbjct: 254 PALREILQRTGMLDGGPKIALPGDNTADSAVVSPSAAIVETSVAQPVDEPTARRSKSAPA 313 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 314 ARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL 373 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 374 --STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 431 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKIN 306 +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG N Sbjct: 432 ARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWTTITPSNLPFRFQQAPGAHN 491 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 ++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 492 SLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDA 550 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 551 RISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|269139502|ref|YP_003296203.1| hypothetical protein ETAE_2157 [Edwardsiella tarda EIB202] gi|267985163|gb|ACY84992.1| hypothetical protein ETAE_2157 [Edwardsiella tarda EIB202] gi|304559391|gb|ADM42055.1| L,D-transpeptidase YcbB [Edwardsiella tarda FL6-60] Length = 544 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 118/431 (27%), Positives = 188/431 (43%), Gaps = 42/431 (9%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ + LY Y + LV+ ++ Sbjct: 125 MMGYLQYVAGVAANGDAWLYGNKSYTLAAPPAGLVDN-------------WQRALRQGTL 171 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSV 111 F+ + S A+ + WP++P P L G+SS ++ Sbjct: 172 TVFIRSLAP---------SNPQYPAMRTALETL--LADTQPWPQMPSGPTLRSGDSSPAI 220 Query: 112 QRLRERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 LR L+ SG L G + + +AVK FQ GL P G++ T +NV Sbjct: 221 ATLRAILLRSGALSTAEAGDGDVYTPALVAAVKRFQSGQGLTPDGVIGPRTYAWLNVTPS 280 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 +R L +N+ R++ L ++VNIP S+ +GK L S VIVGR R+TP+ Sbjct: 281 MRAALLALNIQRLRLLPASV--HTGIMVNIPNYSMTYYRDGKDVLSSRVIVGRPARKTPL 338 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVD 287 ++S +N ++ NP W +P ++++D++ +DP Y + + ++ + + +D Sbjct: 339 MNSELNNVVVNPPWNVPTKLVREDIVPKAMRDPGYFERHGYTLLSGWSGDVQVINPYMID 398 Query: 288 WNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 WNS NF + RQ PG N++ K S++ Y+HDTP LFN +R +SGCVR Sbjct: 399 WNSVSARNFPYRVRQAPGASNSLGRFKFNMPSQDAIYLHDTPNHALFNQDIRALSSGCVR 458 Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 + L LL D WS + ++ T V + +PV Y +AW QF Sbjct: 459 INKASTLADMLLADA-GWSPERVASALQAGNTQYVPIRQRIPVRLYYQTAWVSDGGEPQF 517 Query: 406 RDDIYGLDNVH 416 R DIY D + Sbjct: 518 RTDIYNYDQLA 528 >gi|168822072|ref|ZP_02834072.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205341461|gb|EDZ28225.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085238|emb|CBY95023.1| Uncharacterized protein ycbB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 615 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 127/467 (27%), Positives = 196/467 (41%), Gaps = 81/467 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLANTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLD-----------------------------------------PSKGL 130 LRE L +G LD S Sbjct: 254 PALREILQRTGMLDGGPKIALPGDNTADSAVVSPSAAVVETSVAQPVDEPTARRSKSAPA 313 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 314 ARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL 373 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 374 --STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 431 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKIN 306 +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG N Sbjct: 432 ARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHN 491 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 ++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 492 SLGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDA 550 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 551 RISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|77463328|ref|YP_352832.1| hypothetical protein RSP_2774 [Rhodobacter sphaeroides 2.4.1] gi|126462184|ref|YP_001043298.1| peptidoglycan binding domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|77387746|gb|ABA78931.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1] gi|126103848|gb|ABN76526.1| Peptidoglycan-binding domain 1 protein [Rhodobacter sphaeroides ATCC 17029] Length = 546 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 121/408 (29%), Positives = 194/408 (47%), Gaps = 13/408 (3%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDR-FDNFLARVDMGIDSDIPIISKETIAQ 77 +L L + +D I + + F A +DS P A+ Sbjct: 134 LLAWAHDLHGGALEPGKVDPGIKRAVKRLDPRSVLTAFEANPVHFLDSLAP--RGPDYAR 191 Query: 78 TEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 +A + ++ GGW +P L G + LR+RL+ G L S S +DA Sbjct: 192 LMRARLDLEATVAAGGWGAAVPAGKLKPGATGPGFLALRDRLMAMGYLGRSTAAS--YDA 249 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 V +AV+ FQ HGL P G+ T+ A+NV + R++ + V L R + L G R++ Sbjct: 250 EVAAAVRSFQTDHGLSPDGVAGEGTIAALNVAPEARLKSILVALERER-WLSIDRGERHI 308 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 VN+ S ++NGKV + ++G+ D++TP + ++ NP W +PRSI K+ Sbjct: 309 WVNLADFSTRLIDNGKVTFETRSVIGKDSPDQRTPEFSDEMEYMVINPSWHVPRSITTKE 368 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTK 312 + LL+++P ++ +ID +G+EV V++N+ NF F RQ P NA+ K Sbjct: 369 YLPLLQRNPN--AAGHLKLIDSRGREVSRGAVNFNAYNARNFPFSMRQPPSDGNALGLVK 426 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F ++ N Y+HDTP LF+ VR + GC+R+ D LL + + Sbjct: 427 FMFPNQWNIYLHDTPSKSLFDREVRAFSHGCIRLGRPFDFAYALLAAQTDDPEGLFQSHL 486 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + + + V+L VPVH VY +AW+ + +RDDIYG D V + Sbjct: 487 SSGRESVVRLEKPVPVHLVYFTAWAGPTGQMNYRDDIYGRDGVIFDAL 534 >gi|309795089|ref|ZP_07689509.1| conserved hypothetical protein [Escherichia coli MS 145-7] gi|308121393|gb|EFO58655.1| conserved hypothetical protein [Escherichia coli MS 145-7] Length = 615 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|300937730|ref|ZP_07152531.1| conserved hypothetical protein [Escherichia coli MS 21-1] gi|300457237|gb|EFK20730.1| conserved hypothetical protein [Escherichia coli MS 21-1] Length = 615 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 199/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDTVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNNREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|16128892|ref|NP_415445.1| murein L,D-transpeptidase [Escherichia coli str. K-12 substr. MG1655] gi|89107775|ref|AP_001555.1| predicted carboxypeptidase [Escherichia coli str. K-12 substr. W3110] gi|170080583|ref|YP_001729903.1| carboxypeptidase [Escherichia coli str. K-12 substr. DH10B] gi|238900183|ref|YP_002925979.1| putative carboxypeptidase [Escherichia coli BW2952] gi|2506630|sp|P22525|YCBB_ECOLI RecName: Full=Probable L,D-transpeptidase YcbB gi|1787155|gb|AAC74011.1| murein L,D-transpeptidase [Escherichia coli str. K-12 substr. MG1655] gi|4062492|dbj|BAA35671.1| predicted carboxypeptidase [Escherichia coli str. K12 substr. W3110] gi|169888418|gb|ACB02125.1| predicted carboxypeptidase [Escherichia coli str. K-12 substr. DH10B] gi|238862186|gb|ACR64184.1| predicted carboxypeptidase [Escherichia coli BW2952] gi|260449929|gb|ACX40351.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli DH1] gi|315135573|dbj|BAJ42732.1| hypothetical protein ECDH1ME8569_0876 [Escherichia coli DH1] Length = 615 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LCDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|281178056|dbj|BAI54386.1| putative amidase [Escherichia coli SE15] Length = 615 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKLMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|311280161|ref|YP_003942392.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] gi|308749356|gb|ADO49108.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] Length = 602 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 132/467 (28%), Positives = 205/467 (43%), Gaps = 66/467 (14%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL + N+ LY Y + P+ +IN+ ++ N Sbjct: 161 MLGYLHFISNIALQGNRWLYSDKPY-------GMSTPPL------SVINQWQLALDNGSL 207 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSV 111 F+A + A +A+ + WP++ L+ G S V Sbjct: 208 PRFIAGLAPQ---------HPQYAAMHQALLAL--VTDSRPWPQMASSGKLNPGQWSKDV 256 Query: 112 QRLRERLIISGDLD-------------------------PSKGLSVAFDAYVESAVKLFQ 146 LRE L +G LD + +D + AVK FQ Sbjct: 257 PALREILQRTGMLDNTPNIALPGDSGAVSPSAAPVKKVKAASSAPAVYDRQLVEAVKRFQ 316 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 GL G++ ST +A+NV R L +N+ R++ LL K+ ++VNIPA SL Sbjct: 317 ASQGLGADGVIGQSTRDALNVSSAQRAGVLALNIQRLR-LLPGKLS-TGIMVNIPAYSLV 374 Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL Sbjct: 375 YYQNGSQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYL 434 Query: 267 KDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTY 322 + + ++ + + VDW++ P N FR Q PG N++ K S Y Sbjct: 435 ERHGYTVLRGWNSKETINPYHVDWSTITPSNLPFRFQQAPGAKNSLGRYKFNMPSSEAIY 494 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL 382 +HDTP LF R +SGCVRV +L LL+D W+ I + +K T V + Sbjct: 495 LHDTPNHNLFQKDTRALSSGCVRVNKAPELASMLLQDA-GWNDTRISDALKQGDTRYVNI 553 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH-VGIIPLPEDHPI 428 +PV+ Y++A+ D Q+R DIY D + G LP+ + Sbjct: 554 RQNIPVNLYYLTAFVGPDGRTQYRTDIYNYDLMARSGAQILPKAEQL 600 >gi|291281926|ref|YP_003498744.1| putative peptidoglycan binding domain protein [Escherichia coli O55:H7 str. CB9615] gi|209774748|gb|ACI85686.1| putative amidase [Escherichia coli] gi|209774754|gb|ACI85689.1| putative amidase [Escherichia coli] gi|290761799|gb|ADD55760.1| Putative peptidoglycan binding domain protein [Escherichia coli O55:H7 str. CB9615] gi|320642918|gb|EFX12119.1| murein L,D-transpeptidase [Escherichia coli O157:H- str. 493-89] gi|320648375|gb|EFX17030.1| murein L,D-transpeptidase [Escherichia coli O157:H- str. H 2687] gi|320653691|gb|EFX21765.1| murein L,D-transpeptidase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659836|gb|EFX27392.1| murein L,D-transpeptidase [Escherichia coli O55:H7 str. USDA 5905] gi|320664305|gb|EFX31456.1| murein L,D-transpeptidase [Escherichia coli O157:H7 str. LSU-61] Length = 615 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQQALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|78189746|ref|YP_380084.1| hypothetical protein Cag_1790 [Chlorobium chlorochromatii CaD3] gi|78171945|gb|ABB29041.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3] Length = 563 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 118/398 (29%), Positives = 198/398 (49%), Gaps = 7/398 (1%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDIL 89 P+ + ++ L R + + +K +A Y++I Sbjct: 167 PVRFEPTWNFSSPPNLFHFDELLARTLQRTSPSEVLNGLLPRDPGYDVLKKELARYREIA 226 Query: 90 SRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQ 146 GGW +P L G+ V LR+RL SGD+ S + ++ V AVK FQ Sbjct: 227 KNGGWSAIPAGTLLQEGSRDARVPLLRQRLAASGDISSSAVADTTTLYNPDVTKAVKRFQ 286 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 +HGL G+V ++TL A+NV D RI QL+VNL R + LL + V+VNIPA +L Sbjct: 287 QQHGLWSDGVVGATTLRAINVSADERIGQLRVNLERCRWLL-HDISPTSVIVNIPAYTLH 345 Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 E G + VIVG+ R TP+ + + ++ NP WV+P +++ KD++ + +DP YL Sbjct: 346 YFEQGDRRWSTRVIVGQPKRPTPVFRADMQLLILNPRWVVPSTVLAKDVLPAVIKDPAYL 405 Query: 267 KDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMH 324 + + ++DE G + + W+S +R Q G A+ K +R Y+H Sbjct: 406 RKKKLRVVDENGTIIDPATIKWSSYSASTLPYRLQQKSGDDGALGRIKFLMPNRYTIYLH 465 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 DTP+ LF R +SGC+RV++ +L +L+ + SR +E +K+ T+ ++L Sbjct: 466 DTPDKALFQKTQRAFSSGCIRVQHPEELARLVLRHSNRESRPSLESRIKSGATSTIRLPQ 525 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 ++PV+ +Y++A ++ +FR+DIY D + + Sbjct: 526 QIPVYLIYLTALP-CNNKAEFREDIYHRDPQILKALDA 562 >gi|157160446|ref|YP_001457764.1| hypothetical protein EcHS_A1032 [Escherichia coli HS] gi|170020673|ref|YP_001725627.1| hypothetical protein EcolC_2671 [Escherichia coli ATCC 8739] gi|188494298|ref|ZP_03001568.1| putative peptidoglycan binding domain [Escherichia coli 53638] gi|194438718|ref|ZP_03070805.1| putative peptidoglycan binding domain protein [Escherichia coli 101-1] gi|253774046|ref|YP_003036877.1| hypothetical protein ECBD_2670 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161039|ref|YP_003044147.1| hypothetical protein ECB_00929 [Escherichia coli B str. REL606] gi|256023374|ref|ZP_05437239.1| hypothetical protein E4_08369 [Escherichia sp. 4_1_40B] gi|297521034|ref|ZP_06939420.1| hypothetical protein EcolOP_25597 [Escherichia coli OP50] gi|300929620|ref|ZP_07145082.1| conserved hypothetical protein [Escherichia coli MS 187-1] gi|300949712|ref|ZP_07163691.1| conserved hypothetical protein [Escherichia coli MS 116-1] gi|300955427|ref|ZP_07167801.1| hypothetical protein HMPREF9547_01312 [Escherichia coli MS 175-1] gi|301022419|ref|ZP_07186302.1| conserved hypothetical protein [Escherichia coli MS 196-1] gi|301643445|ref|ZP_07243493.1| conserved hypothetical protein [Escherichia coli MS 146-1] gi|307137554|ref|ZP_07496910.1| hypothetical protein EcolH7_05406 [Escherichia coli H736] gi|331641451|ref|ZP_08342586.1| putative amidase [Escherichia coli H736] gi|157066126|gb|ABV05381.1| putative peptidoglycan binding domain [Escherichia coli HS] gi|169755601|gb|ACA78300.1| Peptidoglycan-binding domain 1 protein [Escherichia coli ATCC 8739] gi|188489497|gb|EDU64600.1| putative peptidoglycan binding domain [Escherichia coli 53638] gi|194422350|gb|EDX38350.1| putative peptidoglycan binding domain protein [Escherichia coli 101-1] gi|242376740|emb|CAQ31453.1| L,D-transpeptidase YcbB [Escherichia coli BL21(DE3)] gi|253325090|gb|ACT29692.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972940|gb|ACT38611.1| predicted carboxypeptidase [Escherichia coli B str. REL606] gi|253977154|gb|ACT42824.1| predicted carboxypeptidase [Escherichia coli BL21(DE3)] gi|299881260|gb|EFI89471.1| conserved hypothetical protein [Escherichia coli MS 196-1] gi|300317650|gb|EFJ67434.1| hypothetical protein HMPREF9547_01312 [Escherichia coli MS 175-1] gi|300450893|gb|EFK14513.1| conserved hypothetical protein [Escherichia coli MS 116-1] gi|300462457|gb|EFK25950.1| conserved hypothetical protein [Escherichia coli MS 187-1] gi|301078159|gb|EFK92965.1| conserved hypothetical protein [Escherichia coli MS 146-1] gi|315619119|gb|EFU99699.1| putative peptidoglycan binding domain protein [Escherichia coli 3431] gi|323938031|gb|EGB34293.1| ykud domain-containing protein [Escherichia coli E1520] gi|323942841|gb|EGB39006.1| ykud domain-containing protein [Escherichia coli E482] gi|323962917|gb|EGB58491.1| ykud domain-containing protein [Escherichia coli H489] gi|331038249|gb|EGI10469.1| putative amidase [Escherichia coli H736] gi|332342367|gb|AEE55701.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 615 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LCDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|205352202|ref|YP_002226003.1| hypothetical protein SG0937 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207856386|ref|YP_002243037.1| hypothetical protein SEN0899 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205271983|emb|CAR36827.1| putative exported protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206708189|emb|CAR32482.1| putative exported protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326627246|gb|EGE33589.1| putative peptidoglycan binding domain-containing protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 616 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 127/468 (27%), Positives = 197/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLANTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 254 PALREILQRTGMLDGGPKIALPGDNTADSAVVSPSAVVDETSVAQPVDEQTARRSKPAPA 313 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 314 VRAAYDNELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAE 373 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 374 L--STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 431 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG Sbjct: 432 LARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWTTITPSNLPFRFQQAPGAH 491 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 492 NSLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWND 550 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 551 ARISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 598 >gi|331662339|ref|ZP_08363262.1| putative amidase [Escherichia coli TA143] gi|331060761|gb|EGI32725.1| putative amidase [Escherichia coli TA143] Length = 615 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDTVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|168237100|ref|ZP_02662158.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734245|ref|YP_002114048.1| hypothetical protein SeSA_A1110 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194709747|gb|ACF88968.1| YcbB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289807|gb|EDY29168.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 615 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 127/467 (27%), Positives = 196/467 (41%), Gaps = 81/467 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLANTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLD-----------------------------------------PSKGL 130 LRE L +G LD S Sbjct: 254 PALREILQRTGTLDGGPKIALPGDNTADSAVVSPSAAVVETSVAQPVDEQTARRSKSAPA 313 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 314 ARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL 373 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 374 --STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 431 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKIN 306 +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG N Sbjct: 432 ARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHN 491 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 ++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 492 SLGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDA 550 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 551 RISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|194337477|ref|YP_002019271.1| Peptidoglycan-binding domain 1 protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309954|gb|ACF44654.1| Peptidoglycan-binding domain 1 protein [Pelodictyon phaeoclathratiforme BU-1] Length = 549 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 130/416 (31%), Positives = 206/416 (49%), Gaps = 9/416 (2%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYH---SIVNDRFDNFLARVDMGIDSDIPIISKET 74 +L + + L + LD N SIV ++ + +A + + Sbjct: 128 SLLSLAVHLRYGRVDPETLDTHWNSRQTRNGSIVENKLHHAIASGHIADALKELRLQHPK 187 Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDP-SKGLSV 132 Q K + Y+ I GGWP L P L G V LR+RL +SGD+ + S Sbjct: 188 YEQLRKGLVRYRTIARAGGWPVLAEGPKLQEGARGKRVMLLRQRLRVSGDIAVLNTDTST 247 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 ++ V AVK FQ R+G+ G+V ++TL MN+PV+ RI ++++NL R + L + + Sbjct: 248 VYNREVVEAVKHFQKRNGMVADGVVGATTLRVMNIPVERRIDEIRLNLERYRWFL-RDLE 306 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 ++VNIP +L+ +ENG+ + VI G+ R+TP+ + + ++ NP WVIP +I+ Sbjct: 307 PTAIMVNIPRFTLQYIENGQDKWETRVITGKPPRETPLFKADMQYVILNPRWVIPPTILA 366 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMAS 310 KD + LR+ YL + +ID G + V+W+ NF +R Q G A+ Sbjct: 367 KDALPALRKSNSYLNRKRLTIIDRNGAVIDPVSVNWSQYSGGNFPYRLQQSSGDHGALGR 426 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K +R Y+HDTP LF R +SGCVRV N +DL +L+D+ WS+ I Sbjct: 427 IKFLLPNRYIVYLHDTPNKELFAASKRLFSSGCVRVENPVDLATLVLQDSVRWSKVKILS 486 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDH 426 +K+ KT V L +PV+ +Y++ D + FRDD+Y D + + P Sbjct: 487 AIKSGKTKTVLLPKRIPVYLLYLTVTPEGD-ELFFRDDVYNRDERLLKALNKPLPQ 541 >gi|331672461|ref|ZP_08373251.1| putative amidase [Escherichia coli TA280] gi|284920776|emb|CBG33839.1| putative exported protein [Escherichia coli 042] gi|331070367|gb|EGI41732.1| putative amidase [Escherichia coli TA280] Length = 615 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDTVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|170769178|ref|ZP_02903631.1| putative peptidoglycan binding domain [Escherichia albertii TW07627] gi|170121830|gb|EDS90761.1| putative peptidoglycan binding domain [Escherichia albertii TW07627] Length = 615 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 128/468 (27%), Positives = 203/468 (43%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ N + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPY-------ALSTPPL------SVINQWQVALDNGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDNKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G L+ P+ Sbjct: 253 PALREILQRTGMLEGGPKIALPGDDTQPDGAVSPSAAAVETAGTQPINRQTTAHSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+++ + +AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYNSELVNAVKRFQAWQGLGADGTIGPATRDWLNVTPAQRAGVLALNIQRLRLLPAE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSKEAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASELANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|16759864|ref|NP_455481.1| hypothetical protein STY0997 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142363|ref|NP_805705.1| hypothetical protein t1939 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213424610|ref|ZP_03357393.1| hypothetical protein SentesTyphi_02366 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213650528|ref|ZP_03380581.1| hypothetical protein SentesTy_26793 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|25367958|pir||AI0615 probable exported protein STY0997 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502157|emb|CAD05395.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137993|gb|AAO69554.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 615 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 126/467 (26%), Positives = 195/467 (41%), Gaps = 81/467 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLTNTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLD-----------------------------------------PSKGL 130 LRE L +G LD Sbjct: 254 PALREILQRTGMLDGGPKIALPGDNTSDSAVVSPSAVVDETSVAQPVDEPTARRSKPAPA 313 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 314 ARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL 373 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 374 --STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 431 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKIN 306 +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG N Sbjct: 432 ARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHN 491 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 ++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 492 SLGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDA 550 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 551 RISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|320202321|gb|EFW76892.1| L,D-transpeptidase YcbB [Escherichia coli EC4100B] Length = 615 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|82544667|ref|YP_408614.1| hypothetical protein SBO_2216 [Shigella boydii Sb227] gi|191166981|ref|ZP_03028804.1| putative peptidoglycan binding domain [Escherichia coli B7A] gi|193064628|ref|ZP_03045707.1| putative peptidoglycan binding domain [Escherichia coli E22] gi|193070734|ref|ZP_03051669.1| putative peptidoglycan binding domain [Escherichia coli E110019] gi|194428336|ref|ZP_03060877.1| putative peptidoglycan binding domain protein [Escherichia coli B171] gi|209918175|ref|YP_002292259.1| hypothetical protein ECSE_0984 [Escherichia coli SE11] gi|218553512|ref|YP_002386425.1| hypothetical protein ECIAI1_0966 [Escherichia coli IAI1] gi|218694399|ref|YP_002402066.1| hypothetical protein EC55989_0971 [Escherichia coli 55989] gi|260843174|ref|YP_003220952.1| putative carboxypeptidase [Escherichia coli O103:H2 str. 12009] gi|260854216|ref|YP_003228107.1| putative carboxypeptidase [Escherichia coli O26:H11 str. 11368] gi|293433222|ref|ZP_06661650.1| hypothetical protein ECCG_01347 [Escherichia coli B088] gi|300816970|ref|ZP_07097189.1| conserved hypothetical protein [Escherichia coli MS 107-1] gi|300823665|ref|ZP_07103792.1| conserved hypothetical protein [Escherichia coli MS 119-7] gi|300902916|ref|ZP_07120861.1| hypothetical protein HMPREF9536_01061 [Escherichia coli MS 84-1] gi|300921037|ref|ZP_07137424.1| conserved hypothetical protein [Escherichia coli MS 115-1] gi|301302465|ref|ZP_07208596.1| hypothetical protein HMPREF9347_01042 [Escherichia coli MS 124-1] gi|307311688|ref|ZP_07591328.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli W] gi|331667303|ref|ZP_08368168.1| putative amidase [Escherichia coli TA271] gi|331676713|ref|ZP_08377409.1| putative amidase [Escherichia coli H591] gi|81246078|gb|ABB66786.1| putative amidase [Shigella boydii Sb227] gi|190902975|gb|EDV62701.1| putative peptidoglycan binding domain [Escherichia coli B7A] gi|192927685|gb|EDV82300.1| putative peptidoglycan binding domain [Escherichia coli E22] gi|192955927|gb|EDV86395.1| putative peptidoglycan binding domain [Escherichia coli E110019] gi|194413551|gb|EDX29832.1| putative peptidoglycan binding domain protein [Escherichia coli B171] gi|209911434|dbj|BAG76508.1| putative amidase [Escherichia coli SE11] gi|218351131|emb|CAU96835.1| putative exported enzyme [Escherichia coli 55989] gi|218360280|emb|CAQ97830.1| putative exported enzyme [Escherichia coli IAI1] gi|257752865|dbj|BAI24367.1| predicted carboxypeptidase [Escherichia coli O26:H11 str. 11368] gi|257758321|dbj|BAI29818.1| predicted carboxypeptidase [Escherichia coli O103:H2 str. 12009] gi|291324041|gb|EFE63463.1| hypothetical protein ECCG_01347 [Escherichia coli B088] gi|300405058|gb|EFJ88596.1| hypothetical protein HMPREF9536_01061 [Escherichia coli MS 84-1] gi|300412028|gb|EFJ95338.1| conserved hypothetical protein [Escherichia coli MS 115-1] gi|300523865|gb|EFK44934.1| conserved hypothetical protein [Escherichia coli MS 119-7] gi|300530322|gb|EFK51384.1| conserved hypothetical protein [Escherichia coli MS 107-1] gi|300842304|gb|EFK70064.1| hypothetical protein HMPREF9347_01042 [Escherichia coli MS 124-1] gi|306908243|gb|EFN38742.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli W] gi|315060210|gb|ADT74537.1| murein L,D-transpeptidase [Escherichia coli W] gi|315257966|gb|EFU37934.1| putative amidase [Escherichia coli MS 85-1] gi|320183824|gb|EFW58657.1| L,D-transpeptidase YcbB [Shigella flexneri CDC 796-83] gi|323157188|gb|EFZ43311.1| putative peptidoglycan binding domain protein [Escherichia coli EPECa14] gi|323159552|gb|EFZ45532.1| putative peptidoglycan binding domain protein [Escherichia coli E128010] gi|323379230|gb|ADX51498.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli KO11] gi|323947286|gb|EGB43294.1| ykud domain-containing protein [Escherichia coli H120] gi|324117210|gb|EGC11118.1| ykud domain-containing protein [Escherichia coli E1167] gi|331065659|gb|EGI37552.1| putative amidase [Escherichia coli TA271] gi|331075402|gb|EGI46700.1| putative amidase [Escherichia coli H591] gi|332093526|gb|EGI98584.1| putative peptidoglycan binding domain protein [Shigella boydii 3594-74] Length = 615 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|168233416|ref|ZP_02658474.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468577|ref|ZP_03074561.1| YcbB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194454941|gb|EDX43780.1| YcbB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332469|gb|EDZ19233.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 615 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 126/467 (26%), Positives = 195/467 (41%), Gaps = 81/467 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLANTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLD-----------------------------------------PSKGL 130 LRE L +G LD Sbjct: 254 PALREILQRTGMLDGGPKIALPGDNTSDSAVVSPSAVVDETSVAQPVDEQTARSSKPAPA 313 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 314 ARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL 373 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 374 --STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 431 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKIN 306 +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG N Sbjct: 432 ARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHN 491 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 ++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 492 SLGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDA 550 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 551 RISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|16764355|ref|NP_459970.1| hypothetical protein STM0995 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167994946|ref|ZP_02576036.1| YcbB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|16419508|gb|AAL19929.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327278|gb|EDZ14042.1| YcbB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|267992734|gb|ACY87619.1| hypothetical protein STM14_1125 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157538|emb|CBW17028.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911981|dbj|BAJ35955.1| hypothetical protein STMDT12_C10120 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223319|gb|EFX48388.1| L,D-transpeptidase YcbB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129260|gb|ADX16690.1| putative L,D-transpeptidase YcbB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987886|gb|AEF06869.1| hypothetical protein STMUK_0961 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 613 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 126/465 (27%), Positives = 195/465 (41%), Gaps = 79/465 (16%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLTNTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLD---------------------------------------PSKGLSV 132 LRE L +G LD + Sbjct: 254 PALREILQRTGMLDGGPKIALPGDNTADSAVVSPSAVVDETSVAHDEPTARRSKPAPAAR 313 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 314 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL-- 371 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ + Sbjct: 372 STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLAR 431 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAM 308 KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG N++ Sbjct: 432 KDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSL 491 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K S + Y+HDTP LF R +SGCVRV +L LL+D W+ I Sbjct: 492 GRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARI 550 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 551 SGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 595 >gi|323973200|gb|EGB68392.1| ykud domain-containing protein [Escherichia coli TA007] Length = 615 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQMTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|157157051|ref|YP_001462144.1| hypothetical protein EcE24377A_1024 [Escherichia coli E24377A] gi|256020947|ref|ZP_05434812.1| hypothetical protein ShiD9_18662 [Shigella sp. D9] gi|301326639|ref|ZP_07219969.1| conserved hypothetical protein [Escherichia coli MS 78-1] gi|332282170|ref|ZP_08394583.1| conserved hypothetical protein [Shigella sp. D9] gi|157079081|gb|ABV18789.1| putative peptidoglycan binding domain [Escherichia coli E24377A] gi|300846684|gb|EFK74444.1| conserved hypothetical protein [Escherichia coli MS 78-1] gi|332104522|gb|EGJ07868.1| conserved hypothetical protein [Shigella sp. D9] Length = 615 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQMTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|260867097|ref|YP_003233499.1| putative carboxypeptidase [Escherichia coli O111:H- str. 11128] gi|257763453|dbj|BAI34948.1| predicted carboxypeptidase [Escherichia coli O111:H- str. 11128] gi|323175452|gb|EFZ61047.1| putative peptidoglycan binding domain protein [Escherichia coli 1180] Length = 615 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYKNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|156934583|ref|YP_001438499.1| hypothetical protein ESA_02417 [Cronobacter sakazakii ATCC BAA-894] gi|156532837|gb|ABU77663.1| hypothetical protein ESA_02417 [Cronobacter sakazakii ATCC BAA-894] Length = 664 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 129/472 (27%), Positives = 203/472 (43%), Gaps = 71/472 (15%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 MVGYL + N+ LY Y L ++N+ ++ N Sbjct: 218 MVGYLHFISGIPSQGNRWLYSEKPYKPEMPAL-------------NVLNQWQVALDNGSV 264 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+ + A ++ Q + WP++ + L G S + Sbjct: 265 PAFVRSLAPA---------HPQYAAMHASL--LQLVADTRPWPQMTGKEKLRPGQWSSDI 313 Query: 112 QRLRERLIISGDLDPSKGLS-----------------------------VAFDAYVESAV 142 L+E L +G LD ++ +D + +AV Sbjct: 314 PALKEILQRTGMLDGGPDIALPGDNNGVVSPSAAPQTASQTRSTPKPTRAVYDKDLVAAV 373 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 K FQ GL G++ ST + +NV R L +N+ R++ LL K+ ++VNIP Sbjct: 374 KRFQKWQGLGADGVIGESTRDWLNVTPAQRAALLALNIQRLR-LLPGKLS-TGIMVNIPE 431 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + D Sbjct: 432 YSLVYYQNGNQVLASRVIVGRPDRKTPLMSSALNNVVVNPPWNVPPTLARKDILPKVWND 491 Query: 263 PQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYS 317 P YL+ + +++ G V VDW + P N FR Q PG N++ K S Sbjct: 492 PGYLESHGYTVLNGWGSNADVVDPWMVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPS 551 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 + Y+HDTP LF R +SGCVRV +L LL+D W+ I + +K T Sbjct: 552 SDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDSRISQTLKEGNT 610 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD-NVHVGIIPLPEDHPI 428 V + +PV+ Y++A+ +D Q+R DIY D G LP+ + Sbjct: 611 RYVNIPQTIPVNLYYLTAFIGEDGRPQYRTDIYNYDHTARSGAQILPKVEQL 662 >gi|294636885|ref|ZP_06715215.1| cell wall degradation protein [Edwardsiella tarda ATCC 23685] gi|291089915|gb|EFE22476.1| cell wall degradation protein [Edwardsiella tarda ATCC 23685] Length = 550 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 122/431 (28%), Positives = 187/431 (43%), Gaps = 42/431 (9%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 ++GYL+ LY Y + LV+ ++ Sbjct: 131 LLGYLQYVAGVGANGESWLYGGKRYTLATPPTGLVDN-------------WQRALHQGTL 177 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSV 111 F+ + S A+A + WP+LP P + G+SS ++ Sbjct: 178 TVFIRSLAP---------SSPQYPAMRAALATL--LGESQPWPKLPSGPTIRPGDSSPAL 226 Query: 112 QRLRERLIISGDLDP-SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 LRE L SG L + + +AVK FQ GL P G++ T +NV Sbjct: 227 PILREILRRSGVLSANQADEGEVYTPALVAAVKRFQRDQGLTPDGVIGPRTYAWLNVTPQ 286 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 LR L +N+ R++ L ++VNIP SL +GK L S VIVGR R+TP+ Sbjct: 287 LRAALLALNIQRLRILPAAM--QTGIMVNIPNYSLIYYRDGKDVLASRVIVGRPSRKTPL 344 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVD 287 ++S +N ++ NP W +P ++++D++ +DP Y + ++ + + +D Sbjct: 345 MNSELNNVVVNPPWNVPTKLVREDIVPKAMRDPGYFDRHGYTLLSGWSSDAQVINPYMID 404 Query: 288 WNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 WNS NF + RQ PG N++ K S++ Y+HDTP LFN +R +SGCVR Sbjct: 405 WNSVSARNFPYRVRQAPGASNSLGRFKFNMPSQDAIYLHDTPNHALFNQDIRALSSGCVR 464 Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 V L LL D WS + ++ T V + +PV Y +AW D QF Sbjct: 465 VNKASTLADMLLADA-GWSDQRVAAALQAGNTQYVPIRQRIPVRLYYQTAWVDGDGAPQF 523 Query: 406 RDDIYGLDNVH 416 R DIY D + Sbjct: 524 RTDIYNYDQLA 534 >gi|204929796|ref|ZP_03220817.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320790|gb|EDZ05991.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322616425|gb|EFY13334.1| hypothetical protein SEEM315_12488 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619675|gb|EFY16550.1| hypothetical protein SEEM971_17482 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622629|gb|EFY19474.1| hypothetical protein SEEM973_13475 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629778|gb|EFY26553.1| hypothetical protein SEEM974_05176 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632500|gb|EFY29246.1| hypothetical protein SEEM201_14855 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637005|gb|EFY33708.1| hypothetical protein SEEM202_02080 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641456|gb|EFY38094.1| hypothetical protein SEEM954_01508 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646078|gb|EFY42594.1| hypothetical protein SEEM054_01025 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649619|gb|EFY46050.1| hypothetical protein SEEM675_16024 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654079|gb|EFY50402.1| hypothetical protein SEEM965_12727 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658611|gb|EFY54873.1| hypothetical protein SEEM19N_16592 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663468|gb|EFY59670.1| hypothetical protein SEEM801_11882 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670204|gb|EFY66344.1| hypothetical protein SEEM507_18659 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671440|gb|EFY67562.1| hypothetical protein SEEM877_09668 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676796|gb|EFY72863.1| hypothetical protein SEEM867_07816 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682720|gb|EFY78739.1| hypothetical protein SEEM180_06862 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686400|gb|EFY82382.1| hypothetical protein SEEM600_05845 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195923|gb|EFZ81090.1| hypothetical protein SEEM581_13131 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199789|gb|EFZ84878.1| hypothetical protein SEEM501_09363 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202782|gb|EFZ87818.1| hypothetical protein SEEM460_08299 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209053|gb|EFZ93990.1| hypothetical protein SEEM020_20065 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209978|gb|EFZ94885.1| hypothetical protein SEEM6152_04835 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217987|gb|EGA02702.1| hypothetical protein SEEM0077_06119 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219019|gb|EGA03526.1| hypothetical protein SEEM0047_21870 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226592|gb|EGA10797.1| hypothetical protein SEEM0055_10100 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229788|gb|EGA13911.1| hypothetical protein SEEM0052_13157 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233013|gb|EGA17109.1| hypothetical protein SEEM3312_03109 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240748|gb|EGA24790.1| hypothetical protein SEEM5258_12719 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243064|gb|EGA27085.1| hypothetical protein SEEM1156_20569 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249773|gb|EGA33675.1| murein L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252754|gb|EGA36592.1| murein L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259168|gb|EGA42812.1| murein L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259991|gb|EGA43619.1| hypothetical protein SEEM8284_18068 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268008|gb|EGA51487.1| murein L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269856|gb|EGA53305.1| murein L,D-transpeptidase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 615 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 127/467 (27%), Positives = 196/467 (41%), Gaps = 81/467 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLTNTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLDP-----------------------------------------SKGL 130 LRE L +G LD S Sbjct: 254 PALREILQRTGMLDDGPKMALPGDNTADSAVVSPSAAVVETSVAQPVDEQTARRSKSAPA 313 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 314 ARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL 373 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 374 --STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 431 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKIN 306 +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG N Sbjct: 432 ARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHN 491 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 ++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 492 SLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDA 550 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 551 RISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|293414205|ref|ZP_06656854.1| hypothetical protein ECDG_00758 [Escherichia coli B185] gi|331651945|ref|ZP_08352964.1| putative amidase [Escherichia coli M718] gi|291434263|gb|EFF07236.1| hypothetical protein ECDG_00758 [Escherichia coli B185] gi|331050223|gb|EGI22281.1| putative amidase [Escherichia coli M718] Length = 615 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 199/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|170683737|ref|YP_001744245.1| hypothetical protein EcSMS35_2195 [Escherichia coli SMS-3-5] gi|170521455|gb|ACB19633.1| putative peptidoglycan binding domain [Escherichia coli SMS-3-5] Length = 615 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 199/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|324019066|gb|EGB88285.1| hypothetical protein HMPREF9542_02261 [Escherichia coli MS 117-3] Length = 615 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 131/468 (27%), Positives = 200/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ LL Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLR-LLPT 371 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++ ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 372 ELSSG-IMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|198244692|ref|YP_002214919.1| hypothetical protein SeD_A1060 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197939208|gb|ACH76541.1| YcbB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326622672|gb|EGE29017.1| YcbB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 616 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 127/468 (27%), Positives = 197/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLANTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 254 PALREILQRTGMLDGGPKIALPGDNTADSAVVSPSAVVDEPSVAQPVDEQTARRSKPAPA 313 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 314 VRAAYDNELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAE 373 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 374 L--STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 431 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG Sbjct: 432 LARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWTTITPSNLPFRFQQAPGAH 491 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 492 NSLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWND 550 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 551 ARISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 598 >gi|311695538|gb|ADP98411.1| peptidoglycan-binding domain 1 protein [marine bacterium HP15] Length = 550 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 133/417 (31%), Positives = 199/417 (47%), Gaps = 12/417 (2%) Query: 15 FVYLILPMGLSLVEKPIHASVL-DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE 73 F L + ++ ++ + E + + L R D+ D + Sbjct: 113 FSDAFLMLSSHMLVGKVNPQTVHAEWTANRRQRQMESVLKDALQRSDITGTLDSLRPADP 172 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKG--- 129 + A +L + W L + P + G+ + +R RL + G+L S Sbjct: 173 AYRKLMAARQDLTRLLGQP-WLPLALSPTIRPGDRDERLNEVRRRLSLLGELAESPATFS 231 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 +DA +ESAV FQ RHGL+ G++ TL A+NV R+R + L R + L + Sbjct: 232 DPRDYDAELESAVMRFQARHGLEADGLIGKDTLTALNVIPVERLRHIDATLERWR-WLPE 290 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 +G YVLVNI L+ VENG LR VIVG+ RQTP+ RI ++FNP W +PR+ Sbjct: 291 SLGDTYVLVNIAGFELKMVENGAEVLRKRVIVGQPFRQTPVFSDRIRYLVFNPTWTVPRT 350 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPNFIF--RQDPGK 304 ++ +D + + +DP YL NI + G + V EVDW S NF + Q+PG Sbjct: 351 LMIQDQLPRILRDPNYLSRLNISVYRGWGADRERVDPLEVDWPSLNRNNFPYQLVQEPGP 410 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 NA+ K F ++ + Y+HDTP LF+ R +SGC+RV DL LL P WS Sbjct: 411 QNALGQIKFMFPNQYDVYLHDTPGRGLFSRAERSFSSGCIRVEQPFDLAERLLASAPDWS 470 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 R I+ VV + V L VPVH Y ++W + +QFR+D+Y D + + Sbjct: 471 REKIDRVVSEAQPQTVVLPEPVPVHIQYWTSWVDNEGRLQFRNDLYNRDARLIDQLR 527 >gi|167553003|ref|ZP_02346753.1| YcbB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|194442554|ref|YP_002040193.1| hypothetical protein SNSL254_A1028 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401217|gb|ACF61439.1| YcbB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|205322472|gb|EDZ10311.1| YcbB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 615 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 127/467 (27%), Positives = 196/467 (41%), Gaps = 81/467 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLANTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLD-----------------------------------------PSKGL 130 LRE L +G LD S Sbjct: 254 PALREILQRTGMLDGGPKIALPGDNTADSAVVSPSAAVVETSVAQPVDEPTARRSKSAPA 313 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 314 ARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL 373 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 374 --STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 431 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKIN 306 +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG N Sbjct: 432 ARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHN 491 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 ++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 492 SLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDA 550 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 551 RISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|74311483|ref|YP_309902.1| hypothetical protein SSON_0928 [Shigella sonnei Ss046] gi|73854960|gb|AAZ87667.1| putative amidase [Shigella sonnei Ss046] Length = 615 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|323185369|gb|EFZ70733.1| putative peptidoglycan binding domain protein [Escherichia coli 1357] Length = 615 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + ++D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRASYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|218548441|ref|YP_002382232.1| hypothetical protein EFER_1069 [Escherichia fergusonii ATCC 35469] gi|218355982|emb|CAQ88598.1| putative exported enzyme [Escherichia fergusonii ATCC 35469] gi|324113744|gb|EGC07719.1| ykud domain-containing protein [Escherichia fergusonii B253] gi|325496863|gb|EGC94722.1| hypothetical protein ECD227_0960 [Escherichia fergusonii ECD227] Length = 615 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 124/468 (26%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ N + Sbjct: 157 MMGYLHFTANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQVALDNGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSV 111 F+A + +++ + WP+L + L G S V Sbjct: 204 PAFVAGLAPK---------HPQYTAMHESLLTL--LADTKPWPQLTGKTTLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G L+ + Sbjct: 253 PALREILQRTGMLEGGPKIALPGDETPAEAVVSPSAVAVETSETKPLDKQTEPRKKAAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDKELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPAE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL ++G L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQDGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSKEAIDPWQVDWSTITASNLPFRFQQAPGAR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 491 NSLGRYKFNMPSTDAIYLHDTPNHNLFKRDTRALSSGCVRVNKASELANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQTIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|200389383|ref|ZP_03215994.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199601828|gb|EDZ00374.1| putative peptidoglycan binding domain protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 615 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 127/467 (27%), Positives = 196/467 (41%), Gaps = 81/467 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLANTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLD-----------------------------------------PSKGL 130 LRE L +G LD S Sbjct: 254 PALREILQRTGMLDGGPKIALPGDNTADSAVVSPSAVVDETSVAQPVDEPTARRSKSAPA 313 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 314 ARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL 373 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 374 --STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 431 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKIN 306 +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG N Sbjct: 432 ARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHN 491 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 ++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 492 SLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDA 550 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 551 RISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|157146384|ref|YP_001453703.1| hypothetical protein CKO_02143 [Citrobacter koseri ATCC BAA-895] gi|157083589|gb|ABV13267.1| hypothetical protein CKO_02143 [Citrobacter koseri ATCC BAA-895] Length = 620 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 200/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ N + Sbjct: 162 MMGYLHFIANIPVKGTRWLYSDKPYALATPPLS-------------VINQWQIALDNGQL 208 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSV 111 F+A + A ++ + WP+L L G S V Sbjct: 209 TTFVASLAPQ---------HPQYAALHDSLKKL--VSDARPWPQLTSTATLRPGQWSNDV 257 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G L+ P+ Sbjct: 258 PALREILQRTGMLEGGPKIALPGDDVAADVVVSPSAVAVEPAAVKPVARQSTQRSQPAPA 317 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G V +T E +NV R L +N+ R++ LL Sbjct: 318 VRAAYDRELVDAVKRFQTWQGLGADGAVGPATREWLNVTPAQRAGVLALNIQRLR-LLPG 376 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++ ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 377 ELS-TGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 435 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ + DP YL+ + ++ + + +VDW++ P N FR Q PG Sbjct: 436 LARKDILPKVWNDPGYLERHGYTVMRGWNSKETINPWQVDWSTITPSNLPFRFQQAPGAH 495 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 496 NSLGRYKFNMPSSDAIYLHDTPNHNLFQKDTRALSSGCVRVNKASELANMLLQDA-GWND 554 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 555 TRISDALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRTQYRTDIYNYD 602 >gi|224582805|ref|YP_002636603.1| hypothetical protein SPC_0996 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467332|gb|ACN45162.1| hypothetical protein SPC_0996 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 639 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 126/467 (26%), Positives = 195/467 (41%), Gaps = 81/467 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 182 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 228 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 229 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLANTATLRPGQWSNDV 277 Query: 112 QRLRERLIISGDLD-----------------------------------------PSKGL 130 LRE L +G LD S Sbjct: 278 PALREILQCTGMLDGGPKIALPGDNTADSAVVSPSAAVVETSVAQPVDEPTARRSKSAPA 337 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 338 ARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL 397 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 398 --STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 455 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKIN 306 +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG N Sbjct: 456 ARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHN 515 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 ++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 516 SLGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDA 574 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+ DIY D Sbjct: 575 RISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYHTDIYNYD 621 >gi|218700556|ref|YP_002408185.1| hypothetical protein ECIAI39_2222 [Escherichia coli IAI39] gi|218370542|emb|CAR18349.1| putative exported enzyme [Escherichia coli IAI39] Length = 615 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 199/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDTVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNNREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTCYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|187731093|ref|YP_001880874.1| hypothetical protein SbBS512_E2393 [Shigella boydii CDC 3083-94] gi|187428085|gb|ACD07359.1| putative peptidoglycan binding domain [Shigella boydii CDC 3083-94] Length = 615 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 131/468 (27%), Positives = 199/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L LG S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRLGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|306812622|ref|ZP_07446815.1| hypothetical protein ECNC101_11937 [Escherichia coli NC101] gi|305853385|gb|EFM53824.1| hypothetical protein ECNC101_11937 [Escherichia coli NC101] Length = 615 Score = 431 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 199/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTIETAETKPMDKQTTSRSKPAPV 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNNREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|218704353|ref|YP_002411872.1| hypothetical protein ECUMN_1119 [Escherichia coli UMN026] gi|293404229|ref|ZP_06648223.1| hypothetical protein ECGG_02618 [Escherichia coli FVEC1412] gi|298380010|ref|ZP_06989615.1| hypothetical protein ECFG_02813 [Escherichia coli FVEC1302] gi|300901645|ref|ZP_07119705.1| conserved hypothetical protein [Escherichia coli MS 198-1] gi|218431450|emb|CAR12328.1| putative exported enzyme [Escherichia coli UMN026] gi|291428815|gb|EFF01840.1| hypothetical protein ECGG_02618 [Escherichia coli FVEC1412] gi|298279708|gb|EFI21216.1| hypothetical protein ECFG_02813 [Escherichia coli FVEC1302] gi|300354938|gb|EFJ70808.1| conserved hypothetical protein [Escherichia coli MS 198-1] Length = 615 Score = 431 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 AALREILQRTGMLDGGPKITLPGDDTPTDTVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|238913232|ref|ZP_04657069.1| hypothetical protein SentesTe_19204 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 615 Score = 431 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 126/467 (26%), Positives = 195/467 (41%), Gaps = 81/467 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLANTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLD-----------------------------------------PSKGL 130 LRE L +G LD Sbjct: 254 PALREILQRTGMLDGGPKIALPGDNTADSAVVSPSAAVVETSVAQPVDEPTARHSKPAPA 313 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 314 ARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL 373 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 374 --STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 431 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKIN 306 +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG N Sbjct: 432 ARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHN 491 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 ++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 492 SLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDA 550 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 551 RISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|222032656|emb|CAP75395.1| Uncharacterized protein ycbB [Escherichia coli LF82] gi|312945445|gb|ADR26272.1| hypothetical protein NRG857_04220 [Escherichia coli O83:H1 str. NRG 857C] Length = 615 Score = 431 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTIETAETKPMDKQTTSRSKPAPV 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|320177116|gb|EFW52131.1| L,D-transpeptidase YcbB [Shigella dysenteriae CDC 74-1112] Length = 611 Score = 431 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 153 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 199 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 200 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 248 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 249 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 308 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 309 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 368 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 369 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 426 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 427 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 486 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 487 NSLGRYKFNMPSSEAIYLHDTPTHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 545 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 593 >gi|197248211|ref|YP_002145913.1| hypothetical protein SeAg_B1001 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211914|gb|ACH49311.1| YcbB [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 615 Score = 431 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 126/467 (26%), Positives = 195/467 (41%), Gaps = 81/467 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLANTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLD-----------------------------------------PSKGL 130 LRE L +G LD Sbjct: 254 PALREILQRTGMLDGGPKIALPGDNTADSAVVSPSAVVDETSVAQPVDEQTARRSKPAPA 313 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 314 ARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL 373 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 374 --STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 431 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKIN 306 +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG N Sbjct: 432 ARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWTTITPSNLPFRFQQAPGAHN 491 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 ++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 492 SLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDA 550 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 551 RISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|215486050|ref|YP_002328481.1| hypothetical protein E2348C_0918 [Escherichia coli O127:H6 str. E2348/69] gi|215264122|emb|CAS08466.1| predicted carboxypeptidase [Escherichia coli O127:H6 str. E2348/69] Length = 615 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 199/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTIETAETKPMDKQTTSRSKPAPV 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTLMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|312969009|ref|ZP_07783216.1| putative peptidoglycan binding domain protein [Escherichia coli 2362-75] gi|312286411|gb|EFR14324.1| putative peptidoglycan binding domain protein [Escherichia coli 2362-75] Length = 611 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 199/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 153 MMGYLHFIANIPVKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 199 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 200 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 248 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 249 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTIETAETKPMDKQTTSRSKPAPV 308 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 309 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 368 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 369 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 426 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 427 LARKDILPKVRNDPGYLESHGYTLMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 486 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 487 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 545 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 593 >gi|315296218|gb|EFU55525.1| conserved hypothetical protein [Escherichia coli MS 16-3] Length = 615 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDTVVSPSAVTVETAETKPMDKQTTSRSKPVPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|15800786|ref|NP_286800.1| hypothetical protein Z1272 [Escherichia coli O157:H7 EDL933] gi|15830262|ref|NP_309035.1| hypothetical protein ECs1008 [Escherichia coli O157:H7 str. Sakai] gi|168751189|ref|ZP_02776211.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4113] gi|168757018|ref|ZP_02782025.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4401] gi|168762937|ref|ZP_02787944.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4501] gi|168769921|ref|ZP_02794928.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4486] gi|168787355|ref|ZP_02812362.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC869] gi|195939660|ref|ZP_03085042.1| hypothetical protein EscherichcoliO157_25185 [Escherichia coli O157:H7 str. EC4024] gi|208822650|ref|ZP_03262969.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4042] gi|217326231|ref|ZP_03442315.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. TW14588] gi|254792124|ref|YP_003076961.1| hypothetical protein ECSP_1029 [Escherichia coli O157:H7 str. TW14359] gi|261227428|ref|ZP_05941709.1| predicted carboxypeptidase [Escherichia coli O157:H7 str. FRIK2000] gi|261256149|ref|ZP_05948682.1| predicted carboxypeptidase [Escherichia coli O157:H7 str. FRIK966] gi|12514097|gb|AAG55410.1|AE005282_5 putative amidase [Escherichia coli O157:H7 str. EDL933] gi|13360467|dbj|BAB34431.1| putative amidase [Escherichia coli O157:H7 str. Sakai] gi|188014739|gb|EDU52861.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4113] gi|189355931|gb|EDU74350.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4401] gi|189361134|gb|EDU79553.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4486] gi|189366781|gb|EDU85197.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4501] gi|189372669|gb|EDU91085.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC869] gi|208738135|gb|EDZ85818.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4042] gi|209774750|gb|ACI85687.1| putative amidase [Escherichia coli] gi|209774752|gb|ACI85688.1| putative amidase [Escherichia coli] gi|209774756|gb|ACI85690.1| putative amidase [Escherichia coli] gi|217322452|gb|EEC30876.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. TW14588] gi|254591524|gb|ACT70885.1| predicted carboxypeptidase [Escherichia coli O157:H7 str. TW14359] gi|320637793|gb|EFX07585.1| murein L,D-transpeptidase [Escherichia coli O157:H7 str. G5101] gi|326338180|gb|EGD62009.1| L,D-transpeptidase YcbB [Escherichia coli O157:H7 str. 1125] Length = 615 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 197/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQQALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAVMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|187776221|ref|ZP_02801228.2| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4196] gi|208809460|ref|ZP_03251797.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4206] gi|208815467|ref|ZP_03256646.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4045] gi|209399966|ref|YP_002269597.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4115] gi|187768375|gb|EDU32219.1| putative peptidoglycan binding domain [Escherichia coli O157:H7 str. EC4196] gi|208729261|gb|EDZ78862.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4206] gi|208732115|gb|EDZ80803.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4045] gi|209161366|gb|ACI38799.1| putative peptidoglycan binding domain protein [Escherichia coli O157:H7 str. EC4115] gi|320192589|gb|EFW67230.1| L,D-transpeptidase YcbB [Escherichia coli O157:H7 str. EC1212] gi|326346157|gb|EGD69895.1| L,D-transpeptidase YcbB [Escherichia coli O157:H7 str. 1044] Length = 611 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 197/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 153 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQQALDKGQL 199 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + E +A + WP+L + L G S V Sbjct: 200 PTFVAGLAPQH--------PQYAVMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 248 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 249 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 308 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 309 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 368 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 369 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 426 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 427 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 486 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 487 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 545 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 593 >gi|259419164|ref|ZP_05743081.1| peptidoglycan-binding domain 1 [Silicibacter sp. TrichCH4B] gi|259345386|gb|EEW57240.1| peptidoglycan-binding domain 1 [Silicibacter sp. TrichCH4B] Length = 540 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 118/418 (28%), Positives = 204/418 (48%), Gaps = 13/418 (3%) Query: 11 LYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPII 70 L V + L++ P +D+ I H + F +++ + Sbjct: 122 LSRALVDYATDLQTGLIDAPAR---IDDGIVRKKHQVDAASFLEGISKDRPAAFLQKLVP 178 Query: 71 SKETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 + + + +++ GGW +P+R + G+S +V LR+RL+ G L P+ Sbjct: 179 ASPQYRALLREKMRLETLMNAGGWGATVPVRKMEPGDSGPNVIALRDRLVSMGYLQPTA- 237 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + +D +E AV+ FQ HGL+ G+ TL +N PV RI+ + V + R + L + Sbjct: 238 -TRTYDLSLEDAVRRFQGEHGLEVDGVAGEGTLTEINRPVTDRIKSVLVAMERERWLTPE 296 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVIP 247 + G R++LVN+ S + V++G++ + ++G R DR+TP ++ ++ NP W +P Sbjct: 297 R-GPRHILVNLTDFSAKIVDDGEISFETRSVIGSNRSDRRTPEFSDEMDHMVINPSWYVP 355 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKI 305 RSI+ K+ + L+ +P + I + D +G+ V VD++ +F F RQ P Sbjct: 356 RSIVTKEYLPKLKNNPN--AHSYIEITDNRGRVVNRNSVDFSQFTARSFPFAMRQPPSSR 413 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 NA+ K F ++ N Y+HDTP+ LF VR + GC+R++ D LL + Sbjct: 414 NALGLVKFMFPNKYNIYLHDTPQKSLFGREVRAYSHGCIRLQKPFDFAYALLAPQTENPK 473 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 + V+ + K T V L T+VPVH +Y +A+ +D +FR DIYG D + Sbjct: 474 DYFHRVLNSGKETKVSLETKVPVHLIYRTAFVSQDGRAEFRRDIYGRDAKIWSALERA 531 >gi|144899601|emb|CAM76465.1| protein conserved in bacteria [Magnetospirillum gryphiswaldense MSR-1] Length = 532 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 114/406 (28%), Positives = 198/406 (48%), Gaps = 11/406 (2%) Query: 21 PMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEK 80 + + V + I R + + P + + + Sbjct: 118 DLSIGRVAPTRQVGGMGAEIRPKLDGTAILRELAAGRELAATLIPVQPAYAG--YHRLKV 175 Query: 81 AIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 A+A Y+ + + GGW +P P + G + +R+RLI++G+L ++ DA + Sbjct: 176 ALARYEKLAADGGWSVIPDGPSIKAGMEDARLPLVRKRLIVTGELATNQSQGNTLDAPLI 235 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 AVK FQ RHG+DP G + TL A+N+ + R+RQ+ NL R + + +++ ++ VN Sbjct: 236 EAVKRFQGRHGIDPDGAIGKQTLTALNISAEERVRQVAANLERWR-WMPRRLDSTHIAVN 294 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 +PAA E V G++ + V+VG + QTP + + + ++ NP W +P SI K+++ L Sbjct: 295 LPAAHFELVREGRIDMAMRVVVGDIQHQTPTMATTMTSVVINPTWTVPPSIATKEILPKL 354 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEE---VDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 R+DP YL +NN+ ++D + + +DW+ + RQ PG NA+ K Sbjct: 355 RKDPGYLANNNMRILDAFDGDFEKSQGLGIDWSKYSKFPYRLRQKPGSDNALGQVKFNLD 414 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 + ++ Y+HDTP+ F + R + GCVR+ DL LL ++E V Sbjct: 415 NGDDIYLHDTPKRQYFGRIFRALSHGCVRLERPTDLAKLLLPAQ----ADKLDEWVLDDT 470 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 T VKL + V+ +Y++AWS +D + FR+D+YG D+ + Sbjct: 471 TRTVKLDKPLTVYLMYMTAWSDEDGTVHFREDLYGHDSRLKTALKR 516 >gi|293409302|ref|ZP_06652878.1| hypothetical protein ECEG_00235 [Escherichia coli B354] gi|291469770|gb|EFF12254.1| hypothetical protein ECEG_00235 [Escherichia coli B354] Length = 615 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITDSNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|323967172|gb|EGB62596.1| ykud domain-containing protein [Escherichia coli M863] gi|327253715|gb|EGE65344.1| putative peptidoglycan binding domain protein [Escherichia coli STEC_7v] Length = 615 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 199/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPV 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLFYLTAFVGADGRTQYRTDIYNYD 597 >gi|220931487|ref|YP_002508395.1| Peptidoglycan-binding domain 1 protein [Halothermothrix orenii H 168] gi|219992797|gb|ACL69400.1| Peptidoglycan-binding domain 1 protein [Halothermothrix orenii H 168] Length = 547 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 125/398 (31%), Positives = 209/398 (52%), Gaps = 19/398 (4%) Query: 36 LDEIINESYHSIVNDRFD--NFLARVDMGIDSDIP-------IISKETIAQTEKAIAFYQ 86 LD + + + + N +D + +++ I+ + +E + KA++ + Sbjct: 142 LDLLTGYTRNGMFNKMYDKHELIKKLNRAIEQESLGKFFIDLYPGQELYFRMRKALSHLR 201 Query: 87 DILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKL 144 +I S+ WP + P L G+ S + LR RL +SGDL + FD +E AV+ Sbjct: 202 NISSK-DWPRVGYGPPLQRGDYSKRIIELRRRLYLSGDLSEEQLNTGTYFDRELEKAVRK 260 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ RHGL SG+VD T+EA+N+PV +I ++ +N+ R++ L + V+VNIP Sbjct: 261 FQRRHGLKDSGIVDDKTIEALNIPVKEKINKIIINMERLR-WLPRDNPDLCVMVNIPEYK 319 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L+ + KV L S VIVG + QTP + I I+ NPYW IP +I + +++ +++DP Sbjct: 320 LKVIREDKVILESKVIVGSRENQTPSFNDSIEYIVLNPYWYIPDNITRYELLPQIKKDPD 379 Query: 265 YLKDNNIHMIDEKGKEVFV---EEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRN 319 YL +NI ++ EV + ++++W+ P NF + RQ PG N++ S K F + Sbjct: 380 YLDKHNIQILSGFEGEVKIIPEDQINWDEVTPENFSYKLRQKPGPGNSLGSIKFLFPNDF 439 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 N Y+HDTP LF R + GC+RV ++L +L WS + ++ + Sbjct: 440 NVYLHDTPSRGLFEYRERALSHGCIRVERPLELAK-VLISQSNWSYNEVISIINSGNREV 498 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 ++L VP++ +Y++ W D +I +R+DIY D V Sbjct: 499 IELKNPVPIYLIYLTVWVDDDGVIHYREDIYQRDKKLV 536 >gi|161614766|ref|YP_001588731.1| hypothetical protein SPAB_02518 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161364130|gb|ABX67898.1| hypothetical protein SPAB_02518 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 615 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 126/467 (26%), Positives = 195/467 (41%), Gaps = 81/467 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLANTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLD-----------------------------------------PSKGL 130 LRE L +G LD Sbjct: 254 PALREILQRTGMLDGGPKIALPGDNTADSAVVSPSAVADETSVAQPVDEPTARRSKPAPA 313 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 314 ARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL 373 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 374 --STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 431 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKIN 306 +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG N Sbjct: 432 ARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHN 491 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 ++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 492 SLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDA 550 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 551 RISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|331646190|ref|ZP_08347293.1| putative amidase [Escherichia coli M605] gi|330910705|gb|EGH39215.1| l,D-transpeptidase YcbB [Escherichia coli AA86] gi|331044942|gb|EGI17069.1| putative amidase [Escherichia coli M605] Length = 615 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 199/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQITSRSKPAPV 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQTWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|146311101|ref|YP_001176175.1| hypothetical protein Ent638_1444 [Enterobacter sp. 638] gi|145317977|gb|ABP60124.1| Peptidoglycan-binding domain 1 protein [Enterobacter sp. 638] Length = 607 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 133/471 (28%), Positives = 204/471 (43%), Gaps = 70/471 (14%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ N+ LY Y + LS +IN+ ++ Sbjct: 162 MMGYLQFIAGIPVNGNRWLYSDKAYKLATPALS-------------VINQWQLALDQGTL 208 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A +++ + WP+L L G S V Sbjct: 209 PRFIASLAPA---------HPQYATMHQSLLKL--VADTRPWPQLRGTATLRPGQWSSDV 257 Query: 112 QRLRERLIISGDLDPSK-----------------------------GLSVAFDAYVESAV 142 LRE L+ SG G A+D + +AV Sbjct: 258 PALREILLRSGATGAEPKIALPGDDPQGVVVSPSAPAPEVKAALPTGKPAAYDRELVAAV 317 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 K FQM GL G++ ST + +NV R L +N+ R++ LL + ++VNIPA Sbjct: 318 KTFQMTQGLGADGVIGPSTRDWLNVSPAQRAGVLALNIQRLR-LLPGTLS-TGIMVNIPA 375 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ L D Sbjct: 376 YSLVYYQNGSEVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKLWDD 435 Query: 263 PQYLKDNNIHMIDEKG--KEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSR 318 P YL+ + ++ + + +VDW + P N FR Q PG+ N++ K S Sbjct: 436 PGYLERHGYTVMRGWNSSQAIDPYQVDWATITPSNLPFRFQQAPGERNSLGRYKFNMPSS 495 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 + Y+HDTP LF R +SGCVRV +L LL D W+ I + +K T Sbjct: 496 DAIYLHDTPNHNLFQKDARALSSGCVRVNKASELANMLLGDA-GWNDTRISDTLKEGNTR 554 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD-NVHVGIIPLPEDHPI 428 V + +PV+ Y++A+ +D Q+R DIY D G LP+ + Sbjct: 555 YVNIRHNIPVNLYYLTAFVGEDGRTQYRTDIYNYDLTARSGAQILPKAEQL 605 >gi|221639179|ref|YP_002525441.1| peptidoglycan-binding domain 1 protein [Rhodobacter sphaeroides KD131] gi|221159960|gb|ACM00940.1| Peptidoglycan-binding domain 1 protein precursor [Rhodobacter sphaeroides KD131] Length = 518 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 121/408 (29%), Positives = 194/408 (47%), Gaps = 13/408 (3%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDR-FDNFLARVDMGIDSDIPIISKETIAQ 77 +L L + +D I + + F A +DS P A+ Sbjct: 106 LLAWAHDLHGGALEPGKVDPGIKRAVKRLDPRSVLTAFEANPVHFLDSLAP--RGPDYAR 163 Query: 78 TEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 +A + ++ GGW +P L G + LR+RL+ G L S S +DA Sbjct: 164 LMRARLDLEATVAAGGWGAAVPAGKLKPGATGPGFLALRDRLMAMGYLGRSTAAS--YDA 221 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 V +AV+ FQ HGL P G+ T+ A+NV + R++ + V L R + L G R++ Sbjct: 222 EVAAAVRSFQTDHGLSPDGVAGEGTIAALNVAPEARLKSILVALERER-WLSIDRGERHI 280 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 VN+ S ++NGKV + ++G+ D++TP + ++ NP W +PRSI K+ Sbjct: 281 WVNLADFSTRLIDNGKVTFETRSVIGKDSPDQRTPEFSDEMEYMVINPSWHVPRSITTKE 340 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTK 312 + LL+++P ++ +ID +G+EV V++N+ NF F RQ P NA+ K Sbjct: 341 YLPLLQRNPN--AAGHLKLIDSRGREVSRGAVNFNAYNARNFPFSMRQPPSDGNALGLVK 398 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F ++ N Y+HDTP LF+ VR + GC+R+ D LL + + Sbjct: 399 FMFPNQWNIYLHDTPSKSLFDREVRAFSHGCIRLGRPFDFAYALLAAQTDDPEGLFQSHL 458 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + + + V+L VPVH VY +AW+ + +RDDIYG D V + Sbjct: 459 SSGRESVVRLEKPVPVHLVYFTAWAGPTGQMNYRDDIYGRDGVIFDAL 506 >gi|126737821|ref|ZP_01753551.1| peptidoglycan binding protein, putative [Roseobacter sp. SK209-2-6] gi|126721214|gb|EBA17918.1| peptidoglycan binding protein, putative [Roseobacter sp. SK209-2-6] Length = 537 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 110/423 (26%), Positives = 191/423 (45%), Gaps = 14/423 (3%) Query: 6 KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDS 65 K+ L FV + +++ +D+ + N + + Sbjct: 115 KVEASLSEAFVTYAAQLQTGMLQPAT----IDDGMVRKRRDSDGAELLNGMQQAQPFAYL 170 Query: 66 DIPIISKETIAQTEKAIAFYQDILSRGGWPE-LPIRPLHLGNSSVSVQRLRERLIISGDL 124 + + + + ++ GGW +P L G+ +V LR RLI G L Sbjct: 171 RALVPASPQYRALLREKQRLEQLVEAGGWGTSVPASKLEPGDQGAAVVSLRNRLIKMGFL 230 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + S +D +E AV+ FQ HGL+ G+ + TL+ +N PV R++ + V + R + Sbjct: 231 --QRSASATYDRNMERAVERFQSEHGLEVDGVAGTGTLKEINRPVQDRLKSVIVAMERER 288 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNP 242 L ++ G R+VLVN + V+NG V + ++G+ DR++P + ++ NP Sbjct: 289 WLAPER-GERHVLVNQTDFTARIVDNGDVTFETRSVIGKNTHDRRSPEFSDTMEHMVINP 347 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQ 300 W +PRSII K+ + LR +P + +I + D +G+ V D++ NF + +Q Sbjct: 348 SWYVPRSIITKEYLPKLRNNPNAV--GHIQITDSRGRVVNRSTADFSQFTARNFPYAMKQ 405 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P NA+ K F ++ N Y+HDTP+ LF VR + GC+R+ + LL Sbjct: 406 PPSSRNALGLVKFMFPNKYNIYLHDTPQKSLFQREVRAFSHGCIRLAQPFEFAYALLARQ 465 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + ++ + K T V+L +VPVH +Y +A+ +FR D+YG D + Sbjct: 466 TEDPKAFFHRILSSGKETKVELEQQVPVHIIYRTAYVSNKGRAEFRRDVYGRDAKVWAAL 525 Query: 421 PLP 423 Sbjct: 526 ERA 528 >gi|261339259|ref|ZP_05967117.1| hypothetical protein ENTCAN_05495 [Enterobacter cancerogenus ATCC 35316] gi|288319116|gb|EFC58054.1| putative periplasmic protein [Enterobacter cancerogenus ATCC 35316] Length = 607 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 132/471 (28%), Positives = 203/471 (43%), Gaps = 70/471 (14%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ N+ LY Y + LS +IN+ S+ N Sbjct: 162 MMGYLQFVAGIPVNGNRWLYSQKPYKLATPALS-------------VINQWQLSLDNGDL 208 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSV 111 F+A + A +++ + WP+L L G S V Sbjct: 209 PRFIASLAPA---------HPQYATMHQSLLAL--VADSRPWPQLRATATLRPGQWSSDV 257 Query: 112 QRLRERLIISGDLDPSKGL-----------------------------SVAFDAYVESAV 142 LRE L SG LD + A+D + +AV Sbjct: 258 PALREILSRSGILDGGPNIALPGDDSQNVVVSPSAPVKEKKAVGLNNKPAAYDRELVAAV 317 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 K FQ GL G++ ST + +NV R L +N+ R++ LL + ++VNIPA Sbjct: 318 KQFQAAQGLGADGVIGQSTRDWLNVSPAQRAGVLALNIQRLR-LLPGTLS-TGIMVNIPA 375 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 SL ++G L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + D Sbjct: 376 YSLVYYQDGNEVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWND 435 Query: 263 PQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSR 318 P YL+ + ++ + + VDW++ N FR Q PG N++ K S Sbjct: 436 PGYLERHGYTVMRGWNSKEAIDPYMVDWSTITASNLPFRFQQAPGAHNSLGRYKFNMPSS 495 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 + Y+HDTP LF R +SGCVRV +L LL+D W+ I + +K T Sbjct: 496 DAIYLHDTPNHTLFQKDTRALSSGCVRVNKASELANMLLQDA-GWNDTRISDALKQGDTR 554 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD-NVHVGIIPLPEDHPI 428 V + +PV+ Y++A+ D Q+R DIY D G LP+ + Sbjct: 555 YVNIRHNIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSGAQILPKAEQL 605 >gi|320355292|ref|YP_004196631.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfobulbus propionicus DSM 2032] gi|320123794|gb|ADW19340.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfobulbus propionicus DSM 2032] Length = 636 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 115/404 (28%), Positives = 197/404 (48%), Gaps = 21/404 (5%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 L S +D + + D + ++A+ Y Sbjct: 201 LEATTPRTSPIDTYLTAIRTGAIQATLDKLSPH-------------HKAYVNLKEALIRY 247 Query: 86 QDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSV-AFDAYVESAVK 143 + I S+GGWP++P+ P L G V +R RL I+ + G + +D+++ +AVK Sbjct: 248 KQIASKGGWPQVPMGPSLRPGAHDDRVPAIRRRLAITDHYHATGGGNAKQYDSHLVAAVK 307 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 FQ RH L+P G+V ST+ AMNV V RI+QL+VNL R + ++ M ++V+I Sbjct: 308 AFQARHHLEPDGVVGKSTVMAMNVTVAERIKQLRVNLERTRWVI-HDMPSSNLIVDIAGF 366 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 L+ + S V+VG+ QTPI S I I+ NP W I I++ + + + +DP Sbjct: 367 MLQYYHDNAPVWTSKVMVGQPFHQTPIFRSAITYIVLNPTWTITPDIVKNETVPSIIKDP 426 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNT 321 YL + ++D G V + W + F + RQD G+ N++ K F + + Sbjct: 427 GYLAKQRLRVLDRNGNAVDPNTIPWTQYQGRYFPYTLRQDAGRDNSLGLIKFLFPNPYHV 486 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW--SRYHIEEVVKTRKTTP 379 Y+HDTP LF R + GC+RV+N ++L +L + P + +++++ + KTT Sbjct: 487 YLHDTPSKSLFGRTRRAFSHGCIRVQNPLELGRMILANDPGNPTTPAKMDQILASGKTTT 546 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 V L +P++ +Y++A +D+ + F+ D+Y D + + P Sbjct: 547 VILKQPLPIYLMYLTANV-QDNKVMFKPDLYSRDEGILTALNTP 589 >gi|300925397|ref|ZP_07141282.1| hypothetical protein HMPREF9548_03475 [Escherichia coli MS 182-1] gi|300418467|gb|EFK01778.1| hypothetical protein HMPREF9548_03475 [Escherichia coli MS 182-1] Length = 615 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQMTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVENPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|309701201|emb|CBJ00501.1| putative exported protein [Escherichia coli ETEC H10407] Length = 615 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 197/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LCDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q G Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQASGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|312144057|ref|YP_003995503.1| ErfK/YbiS/YcfS/YnhG family protein [Halanaerobium sp. 'sapolanicus'] gi|311904708|gb|ADQ15149.1| ErfK/YbiS/YcfS/YnhG family protein [Halanaerobium sp. 'sapolanicus'] Length = 545 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 120/405 (29%), Positives = 199/405 (49%), Gaps = 9/405 (2%) Query: 21 PMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEK 80 + + + V+ E + S + I N L ++ ++ + + + + Sbjct: 136 SLATDYLSGKLDPEVILEDGDFSRNRIDNSEIFEGLKSENITVNLQSKLPESDYYQRLKH 195 Query: 81 AIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAF-DAYV 138 + Y+D WPE+ L G + V +L + LI G L + + + Sbjct: 196 KLYIYRDSGEVEQWPEVDSGSLLAQGAEGIRVSQLSDNLINRGYLSEENIDDKYYFGSQL 255 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 +AVK FQ HGL G+V TLEA+N+P + RI+Q+ +N+ R + L + +G RY+ V Sbjct: 256 NAAVKEFQFNHGLSDDGIVGPQTLEALNIPYEKRIKQIMINMERWR-WLPKDLGERYIYV 314 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 NI SL E+ + + IVG R TP+ I ++FNPYW +P+SI +D++ Sbjct: 315 NISDYSLNVYEDNNIIMNMKTIVGNEQRSTPVFSDEIRYLVFNPYWYVPKSIAVEDILPS 374 Query: 259 LRQDPQYLKDNNIHMIDEKGK----EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTK 312 ++ D YL +NN + ++ E++W + + NF F RQ+PG NA+ K Sbjct: 375 VKNDIDYLDENNYKIFAYNNNNTLRKIDASEIEWENIDEDNFNFLVRQEPGDENALGRVK 434 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F +R N Y+HDTP LF+ R +SGC+R+ I+L ++LLKD W R +EE++ Sbjct: 435 FMFPNRFNVYLHDTPSKYLFDETERGFSSGCIRIEKPIELALYLLKDQEEWDRETLEEIM 494 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 K + L +P++ Y +AW + FR DIY D + + Sbjct: 495 KEDNEKTIYLDETIPIYLQYNTAWVDNFGNLNFRKDIYNRDKILI 539 >gi|323174974|gb|EFZ60589.1| putative peptidoglycan binding domain protein [Escherichia coli LT-68] Length = 615 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 197/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q G Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQASGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|254503422|ref|ZP_05115573.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] gi|222439493|gb|EEE46172.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] Length = 562 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 114/406 (28%), Positives = 190/406 (46%), Gaps = 7/406 (1%) Query: 20 LPMGLSLVEKPIHASVLDEIIN-ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 L L + + +++ +N + + +D + + A+ Sbjct: 153 LRYATHLSSGRVQPNKVNKALNLFPDRPDPTMLLEQAVEAIDFSAFLEGLAPRSDNYARL 212 Query: 79 EKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 ++ +A Y++ + G + +P L G S V LR+RLI ++ +D Sbjct: 213 KRRLAQYREKAATGPFTSVPDGDVLKPGMSDTRVAALRQRLIEEDIPGAAEHSGDVYDGV 272 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + AV FQ HGL G++ TL +N+P++ ++ Q+++N+ R ++ + +G YV Sbjct: 273 LVEAVTTFQDHHGLANDGVIGKETLARLNIPLEEKLVQMELNMER-RRWMRDDLGSFYVF 331 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VN+ L+ V+ GK + V+VG+ TP+ ++ + NP+W +P SI + + Sbjct: 332 VNLADQELKVVKEGKTIHTAPVVVGKPYHATPVFSDTLDYVEINPFWNVPYSIATSEYLP 391 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEF 315 L+Q+P L NI + G E+ ++ WNS NF F RQDPG NA+ K F Sbjct: 392 KLKQNPSALSSKNIRVF-RDGTEIAPTQIAWNSYARGNFPFRLRQDPGNSNALGRIKFMF 450 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 + N Y+HDTP LF+ R + GC+RV + L LL + H E+V T Sbjct: 451 PNEFNIYIHDTPSKSLFSRAERAFSHGCIRVSDPFALADVLLAHKNA-NEGHWEKVRDTE 509 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 K T VK + + VH Y++AW KD FR DIY D + + Sbjct: 510 KRTVVKPSVPIEVHLTYLTAWMNKDGSTHFRKDIYRRDEKLLEALR 555 >gi|26246952|ref|NP_752992.1| hypothetical protein c1067 [Escherichia coli CFT073] gi|227884110|ref|ZP_04001915.1| peptidoglycan binding domain protein [Escherichia coli 83972] gi|300978416|ref|ZP_07174264.1| conserved hypothetical protein [Escherichia coli MS 45-1] gi|301047814|ref|ZP_07194866.1| conserved hypothetical protein [Escherichia coli MS 185-1] gi|331656996|ref|ZP_08357958.1| putative amidase [Escherichia coli TA206] gi|26107352|gb|AAN79535.1|AE016758_139 Hypothetical protein ycbB [Escherichia coli CFT073] gi|227838862|gb|EEJ49328.1| peptidoglycan binding domain protein [Escherichia coli 83972] gi|300300306|gb|EFJ56691.1| conserved hypothetical protein [Escherichia coli MS 185-1] gi|300409658|gb|EFJ93196.1| conserved hypothetical protein [Escherichia coli MS 45-1] gi|307552764|gb|ADN45539.1| putative peptidoglycan binding domain protein [Escherichia coli ABU 83972] gi|315291223|gb|EFU50583.1| conserved hypothetical protein [Escherichia coli MS 153-1] gi|331055244|gb|EGI27253.1| putative amidase [Escherichia coli TA206] Length = 615 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+ + + A E +A + WP+L + L G S V Sbjct: 204 PTFVVGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTIETAETKPMDKQTTSRSKPAPV 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNNREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|62179522|ref|YP_215939.1| hypothetical protein SC0952 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127155|gb|AAX64858.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713990|gb|EFZ05561.1| N-6 adenine-specific DNA methylase, conserved site [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 615 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 127/467 (27%), Positives = 195/467 (41%), Gaps = 81/467 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLANTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLD-----------------------------------------PSKGL 130 LRE L +G LD S Sbjct: 254 PALREILQRTGMLDGGPKIALPGDNTADSAVVSPSAAVVETSVAQPVDEPTARRSKSAPA 313 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 314 ARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL 373 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 374 --STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 431 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKIN 306 +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG N Sbjct: 432 ARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHN 491 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 ++ K S + Y+HDTP LF R +SGCVRV +L LL+D W+ Sbjct: 492 SLGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDA 550 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I +K T V + PV+ Y++A+ D +Q+R DIY D Sbjct: 551 RISGALKQGDTRYVNIRQNTPVNLYYLTAFVGADGRMQYRTDIYNYD 597 >gi|254512058|ref|ZP_05124125.1| peptidoglycan-binding domain 1 [Rhodobacteraceae bacterium KLH11] gi|221535769|gb|EEE38757.1| peptidoglycan-binding domain 1 [Rhodobacteraceae bacterium KLH11] Length = 533 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 118/404 (29%), Positives = 205/404 (50%), Gaps = 12/404 (2%) Query: 23 GLSLVEKPIHASVLDE-IINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 L + + +D ++ E ++ ++ + S++ IA ++ Sbjct: 124 ASDLQSGSVRPAQIDAGLVREVERRAADEHLRQLVSSEGAAYFRALMPQSRQYIALMKQK 183 Query: 82 IAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 A + ++++GGW +P+ L LG++ +V +LR RL+ G L P+ S +D + Sbjct: 184 KAL-EALIAQGGWGETVPVTKLELGDTGANVIKLRNRLVAMGYLKPTA--SPIYDDELLG 240 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AV+ FQ+ HGL+P G+ T+ +N PV R++ + V L R + L ++ G R++LVN Sbjct: 241 AVQAFQIAHGLEPDGVAGKGTITEVNRPVSDRLKAVYVALERER-WLPEERGERHILVNQ 299 Query: 201 PAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 S + V++G+V + ++G+ DR++P + ++ NP W +PRSII K+ + Sbjct: 300 ADFSAKIVDDGQVTFETRAVIGKNTHDRRSPEFSDVMEHMVINPSWYVPRSIITKEYLPK 359 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFY 316 LR +P + +I + D +G++V VD+N NF F RQ P K NA+ K F Sbjct: 360 LRANPNAV--GHIQITDRQGRQVNRGAVDFNQFTARNFPFSMRQPPSKSNALGLVKFMFP 417 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 ++ N Y+HDTP+ LF+ VR + GC+R+ + LL + V+ T K Sbjct: 418 NKYNIYLHDTPQKSLFSREVRAFSHGCIRLAQPFEFAYALLAKQEENPKAFFHRVLNTGK 477 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 T VKL +VPVH +Y +A+ +Q+R D+Y D + Sbjct: 478 ETTVKLDKKVPVHLIYRTAYIGPKGEVQYRRDVYDRDRKIWEAL 521 >gi|194434397|ref|ZP_03066660.1| putative peptidoglycan binding domain protein [Shigella dysenteriae 1012] gi|194417381|gb|EDX33487.1| putative peptidoglycan binding domain protein [Shigella dysenteriae 1012] gi|320182006|gb|EFW56911.1| L,D-transpeptidase YcbB [Shigella boydii ATCC 9905] Length = 615 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPDDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYTYD 597 >gi|332095888|gb|EGJ00895.1| putative peptidoglycan binding domain protein [Shigella dysenteriae 155-74] Length = 611 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 153 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 199 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 200 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 248 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 249 PALREILQRTGMLDGGPKITLPDDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 308 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 309 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 368 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 369 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 426 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 427 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 486 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 487 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 545 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYTYD 593 >gi|331682434|ref|ZP_08383053.1| putative amidase [Escherichia coli H299] gi|331080065|gb|EGI51244.1| putative amidase [Escherichia coli H299] Length = 615 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+ + + A E +A + WP+L + L G S V Sbjct: 204 PTFVVGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTIETAETKPMDKQTTSRSKPAPV 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|323976688|gb|EGB71776.1| ykud domain-containing protein [Escherichia coli TW10509] Length = 615 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 128/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S + Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDI 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTAETAETKAMDQQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A++ + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYNNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|21674674|ref|NP_662739.1| hypothetical protein CT1862 [Chlorobium tepidum TLS] gi|21647879|gb|AAM73081.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 571 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 183/369 (49%), Gaps = 19/369 (5%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPL--HLGNSSVSVQRLRERLIISGDLDPSK-- 128 K + Y+ I GGW + P +G + +R+RLI+SGDL K Sbjct: 195 PEYVLLRKNLLRYRKIAENGGWQPVYQGPNIEKVGQVDKRMPLIRQRLILSGDLAADKLV 254 Query: 129 -------------GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 + + AV FQ HGL G++ TL AMN P +LR Q Sbjct: 255 APADSSLSSAAPVPSDQVYTQELFDAVLAFQQSHGLSADGIIGLETLNAMNYPAELRADQ 314 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 ++VNL R + +G YV+VNIPA SL+ V++ +V +S VIVG+ D QTPI ++I Sbjct: 315 IRVNLERER-WYGGILGGTYVMVNIPAFSLKYVKDNEVRWKSRVIVGKPDTQTPIFAAQI 373 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 + FNP+WVIP I+ K+ + +R+D YL + + ++D GK V V+W S Sbjct: 374 QSVTFNPHWVIPPGILSKEAIPAIRKDIGYLAKHQLTVVDSNGKPVDPSRVNWYSDGGFP 433 Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 + Q G ++ K +R YMHDTP LF +R + GCVRV +L Sbjct: 434 YRLVQASGDDGSLGRIKFNMPNRFMVYMHDTPTKPLFERSMRAYSHGCVRVDRPYELAEQ 493 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 L++D+ WS IE + T KT + L +VPV+F Y +A++ + I FR+DIY D Sbjct: 494 LMRDSKNWSLSKIEAAINTGKTRTIPLTVKVPVYFFYQTAFADGN-KIGFRNDIYDRDKK 552 Query: 416 HVGIIPLPE 424 + + + Sbjct: 553 LLDALNSNQ 561 >gi|323190745|gb|EFZ76014.1| putative peptidoglycan binding domain protein [Escherichia coli RN587/1] Length = 615 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 200/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPV 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP+YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPRYLESHGYTLMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|261246211|emb|CBG24015.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 613 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 125/465 (26%), Positives = 194/465 (41%), Gaps = 79/465 (16%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLTNTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLD---------------------------------------PSKGLSV 132 LRE L +G LD + Sbjct: 254 PALREILQRTGMLDGGPKIALPGDNTADSAVVSPSAVVDETSVAHDEPTARRSKPAPAAR 313 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 314 AYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL-- 371 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ + Sbjct: 372 STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLAR 431 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAM 308 KD++ + D YL+ + ++ + + +VDW + P N FR Q PG N++ Sbjct: 432 KDILPKVWNDLGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSL 491 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K S + Y+HDTP LF R +SGCVRV +L LL+D W+ I Sbjct: 492 GRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARI 550 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 551 SGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 595 >gi|254464823|ref|ZP_05078234.1| peptidoglycan-binding domain 1 [Rhodobacterales bacterium Y4I] gi|206685731|gb|EDZ46213.1| peptidoglycan-binding domain 1 [Rhodobacterales bacterium Y4I] Length = 542 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 108/416 (25%), Positives = 187/416 (44%), Gaps = 10/416 (2%) Query: 13 CFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK 72 ++ L + S +D+ + H++ F + + + Sbjct: 123 AALSMALVDYATDLQTGLLEPSRIDDGMVRKKHTVDGASFLAGIRDTQPFAYMRSLVPAS 182 Query: 73 ETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + + +L+ GGW P + + L G +V LR RL+ G L S S Sbjct: 183 PQYRGLMREKLRLEQVLAAGGWGPAVQAKTLEPGEQGPAVIALRNRLMAMGYLPRSAARS 242 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 +DA + AV+ FQ HGL+ G+ + TL +N PV R++ + + + R + L Sbjct: 243 --YDAAMVQAVQSFQSDHGLETDGVAGAGTLAEVNKPVSDRLKSVIIAMERER-WLSPDR 299 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRS 249 G R++LVN + + V+NG V + ++G+ DR++P + ++ NP W +PRS Sbjct: 300 GERHILVNQTDFTAKIVDNGDVTFETRSVIGKNTDDRRSPEFSDEMEHMVINPSWYVPRS 359 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINA 307 II K+ + LR +P + +I + D +G+ V D++ NF + RQ P NA Sbjct: 360 IITKEYLPKLRNNPNAV--GHIQITDRRGRVVNRSAADFSQYNARNFPYSMRQPPSSSNA 417 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K F ++ N Y+HDTP+ LF VR + GC+R+ + LL + Sbjct: 418 LGLVKFMFPNKYNIYLHDTPQKSLFAREVRAFSHGCIRLAQPFEFAYALLARQTEDPKAF 477 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 ++ + + T V+L +VPVH +Y +A +FR D+YG D + Sbjct: 478 FHRILNSGQETKVELEQKVPVHIIYRTAVVSSKGRAEFRRDVYGRDAKIWAALERA 533 >gi|320196581|gb|EFW71204.1| L,D-transpeptidase YcbB [Escherichia coli WV_060327] Length = 611 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 153 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 199 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 200 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 248 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 249 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTIETAETKPMDKQTTSRSKPAPV 308 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A++ + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 309 VRAAYENELVEAVKRFQTWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 368 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 369 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 426 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 427 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 486 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 487 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 545 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 593 >gi|24112334|ref|NP_706844.1| hypothetical protein SF0922 [Shigella flexneri 2a str. 301] gi|24051196|gb|AAN42551.1| putative amidase [Shigella flexneri 2a str. 301] gi|332759013|gb|EGJ89323.1| putative peptidoglycan binding domain protein [Shigella flexneri 4343-70] gi|332760103|gb|EGJ90401.1| putative peptidoglycan binding domain protein [Shigella flexneri 2747-71] gi|332767712|gb|EGJ97903.1| L,D-transpeptidase YcbB [Shigella flexneri 2930-71] gi|333006182|gb|EGK25691.1| putative peptidoglycan binding domain protein [Shigella flexneri K-218] Length = 615 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 131/468 (27%), Positives = 199/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPIKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLLYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + EVDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWEVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADDRTQYRTDIYNYD 597 >gi|333001241|gb|EGK20809.1| putative peptidoglycan binding domain protein [Shigella flexneri VA-6] Length = 615 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 199/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPIKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLLYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADDRTQYRTDIYNYD 597 >gi|146277082|ref|YP_001167241.1| peptidoglycan binding domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555323|gb|ABP69936.1| Peptidoglycan-binding domain 1 protein [Rhodobacter sphaeroides ATCC 17025] Length = 544 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 118/374 (31%), Positives = 184/374 (49%), Gaps = 10/374 (2%) Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWP-ELPIRPLHLGNSSVSVQRLRER 117 D + A+ +A + ++ GGW ++P L G + V LR R Sbjct: 171 ADPRPFLNGLAPRTPEYARLMRARMELEARIAAGGWGLQVPAGKLRPGATGEGVLALRNR 230 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 L++ G L S S +DA +E+AV+ FQ+ HGL P G+V TL AMNV + R+ + Sbjct: 231 LMVMGYLGRSTVAS--YDASIEAAVRAFQIDHGLTPDGVVGEGTLAAMNVSPETRLESVL 288 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRI 235 V L R + L G R++ VN+ S VE GKV + ++G+ D+++P + Sbjct: 289 VALERER-WLAIDRGERHIWVNLTDFSARIVEGGKVTFETRSVIGKDSPDQRSPEFSDEM 347 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 ++ NP W +PRSI K+ + LL+++P ++ +ID +G+ V V++N+ N Sbjct: 348 EYMVINPSWHVPRSITTKEYLPLLQRNPNAAA--HLKLIDSRGQVVNRGSVNFNAYNARN 405 Query: 296 FIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 F + RQ P NA+ K F + N Y+HDTP LF+ VR + GC+R+ D Sbjct: 406 FPYSMRQPPSDGNALGLVKFMFPNPWNIYLHDTPSKSLFDREVRAFSHGCIRLAQPFDFA 465 Query: 354 VWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 LL + ++T K T V+L VPVH VY +AW+ + +R DIYG D Sbjct: 466 YALLARQSDDPEGLFQSHLRTGKETVVRLEEPVPVHLVYSTAWAGPTGRMSYRQDIYGRD 525 Query: 414 NVHVGIIPLPEDHP 427 V + + P Sbjct: 526 GVILEALRAAGVVP 539 >gi|110641122|ref|YP_668852.1| hypothetical protein ECP_0936 [Escherichia coli 536] gi|191172097|ref|ZP_03033641.1| putative peptidoglycan binding domain [Escherichia coli F11] gi|300983088|ref|ZP_07176432.1| hypothetical protein HMPREF9553_02391 [Escherichia coli MS 200-1] gi|110342714|gb|ABG68951.1| hypothetical protein YcbB [Escherichia coli 536] gi|190907624|gb|EDV67219.1| putative peptidoglycan binding domain [Escherichia coli F11] gi|300306992|gb|EFJ61512.1| hypothetical protein HMPREF9553_02391 [Escherichia coli MS 200-1] gi|324009854|gb|EGB79073.1| hypothetical protein HMPREF9532_00405 [Escherichia coli MS 57-2] gi|324012952|gb|EGB82171.1| hypothetical protein HMPREF9533_03020 [Escherichia coli MS 60-1] Length = 615 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 197/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+ + + A E +A + WP+L + L G S V Sbjct: 204 PTFVVGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTIETAETKPMDKQTTSRSKPVPV 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQTWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|30062460|ref|NP_836631.1| hypothetical protein S0986 [Shigella flexneri 2a str. 2457T] gi|30040706|gb|AAP16437.1| putative amidase [Shigella flexneri 2a str. 2457T] gi|281600285|gb|ADA73269.1| putative amidase [Shigella flexneri 2002017] gi|332762697|gb|EGJ92960.1| putative peptidoglycan binding domain protein [Shigella flexneri K-671] gi|333020100|gb|EGK39371.1| putative peptidoglycan binding domain protein [Shigella flexneri K-304] Length = 615 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPIKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + A +++ + WP+L + L G S V Sbjct: 204 PTFVAGLAPQ---------HPQYAAMHESLLVL--LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLLYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + EVDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWEVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADDRTQYRTDIYNYD 597 >gi|313650833|gb|EFS15234.1| putative peptidoglycan binding domain protein [Shigella flexneri 2a str. 2457T] Length = 611 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 153 MMGYLHFIANIPIKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 199 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + A +++ + WP+L + L G S V Sbjct: 200 PTFVAGLAPQ---------HPQYAAMHESLLVL--LSDTKPWPQLTGKATLRPGQWSNDV 248 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 249 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 308 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 309 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 368 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 369 L--STGIMVNIPAYSLLYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 426 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + EVDW++ N FR Q PG Sbjct: 427 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWEVDWSTITASNLPFRFQQAPGPR 486 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 487 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 545 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADDRTQYRTDIYNYD 593 >gi|218688768|ref|YP_002396980.1| hypothetical protein ECED1_0955 [Escherichia coli ED1a] gi|218426332|emb|CAR07157.1| putative exported enzyme [Escherichia coli ED1a] Length = 615 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P Sbjct: 253 PALREILQRTGMLDGGSKITLPGDDTPTDAVVSPSAVTIETAETKPMDKQTTSRSKPVPV 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A++ + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYENELVEAVKRFQTWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|159044168|ref|YP_001532962.1| hypothetical protein Dshi_1619 [Dinoroseobacter shibae DFL 12] gi|157911928|gb|ABV93361.1| hypothetical protein Dshi_1619 [Dinoroseobacter shibae DFL 12] Length = 536 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 121/408 (29%), Positives = 190/408 (46%), Gaps = 14/408 (3%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IAQ 77 L + + S +D+ I S DR A I + ++ A+ Sbjct: 124 LQYAQDVQSGALSPSRIDKTIVRSL--PRRDRLAQITAFSKSNASRFIKALPPQSNGYAR 181 Query: 78 TEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 KA + + GGW P++ L G S V LR+RLI G L + +S +DA Sbjct: 182 LMKAKLEMEKTIGAGGWGPKVTAAALKPGQSGPQVVALRDRLIRMGYLK--RTVSATYDA 239 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 ++ AV+ FQ HGL G+ TL +N R++ + V L R + + ++G R++ Sbjct: 240 ALQVAVQRFQQDHGLAADGVAAKITLREINTEPTERLKSIIVGLERER-WMNFELGPRHI 298 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +VNIP +ENGK + V+VG+ DR+TP ++ ++ NP W +PRSI K+ Sbjct: 299 MVNIPDFHARVMENGKEVFATRVVVGKNTSDRRTPEFSDEMDHMVINPTWNVPRSIATKE 358 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTK 312 + L+++P + + ++D G+ V EVD+ +F F +Q P NA+ K Sbjct: 359 YLPKLQENPN--AHSYMRLVDASGRTVNRAEVDFTQFNARSFPFDIKQPPSNRNALGLVK 416 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F +++N Y+HDTP LF R + GCVRV + D LL + + Sbjct: 417 FMFPNKHNIYLHDTPAKSLFGRESRAYSHGCVRVADPFDFAYELLSKQERDPEGFFKTTL 476 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 K T V L VPVH VY +A++P Q+R D+YG D + Sbjct: 477 AKGKETWVYLDKPVPVHLVYQTAFAPAKGNTQYRRDVYGRDARLWDAL 524 >gi|82777551|ref|YP_403900.1| hypothetical protein SDY_2332 [Shigella dysenteriae Sd197] gi|81241699|gb|ABB62409.1| putative amidase [Shigella dysenteriae Sd197] Length = 615 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTHWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWKVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLEIHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 597 >gi|309787798|ref|ZP_07682408.1| putative peptidoglycan binding domain protein [Shigella dysenteriae 1617] gi|308924197|gb|EFP69694.1| putative peptidoglycan binding domain protein [Shigella dysenteriae 1617] Length = 610 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 198/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K LY Y +L P+ +IN+ ++ + Sbjct: 152 MMGYLHFIANIPVKGTHWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 198 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 199 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 247 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 248 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 307 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 308 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 367 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 368 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWKVPPT 425 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 426 LARKDILPKVRNDPGYLEIHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 485 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 486 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 544 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 545 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 592 >gi|332092543|gb|EGI97616.1| putative peptidoglycan binding domain protein [Shigella boydii 5216-82] Length = 611 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 197/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 153 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 199 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 200 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 248 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 249 PALREILQRTGMLDGGPKITLPDDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 308 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + VK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 309 VRAAYDNELVEVVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 368 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 369 L--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 426 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 427 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 486 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +SGCVRV DL LL+D W+ Sbjct: 487 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA-GWND 545 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 546 KRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYTYD 593 >gi|206576426|ref|YP_002239427.1| putative peptidoglycan binding protein [Klebsiella pneumoniae 342] gi|288936277|ref|YP_003440336.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella variicola At-22] gi|206565484|gb|ACI07260.1| putative peptidoglycan binding protein [Klebsiella pneumoniae 342] gi|288890986|gb|ADC59304.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella variicola At-22] Length = 596 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 123/445 (27%), Positives = 196/445 (44%), Gaps = 59/445 (13%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL + + LY Y + LS +IN+ ++ N Sbjct: 161 MMGYLHFISGIPTQGTRWLYSSTPYKMATPPLS-------------VINQWQLALDNGSL 207 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + +++ + WP++ L G S + Sbjct: 208 PAFIAGLAPH---------HPQYEAMHQSLLAL--VADSRPWPQMTGSGSLRPGEWSNDI 256 Query: 112 QRLRERLIISGDLDPSK-------------------GLSVAFDAYVESAVKLFQMRHGLD 152 LRE L +G LD + +D + VK FQ GL Sbjct: 257 GALREILQRTGMLDNTANIVLPGDVVSPSAKKKSKPAARGVYDRQLVEGVKRFQAMQGLG 316 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G++ ST + +NV R L +N+ R++ LL K+ ++VNIPA SL ++G Sbjct: 317 ADGVIGQSTRDWLNVSSAQRAGVLALNIQRLR-LLPGKLS-TGIMVNIPAFSLVYYQDGS 374 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R +P YL+ + Sbjct: 375 QVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNNPGYLEQHGYT 434 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + + VDW++ N FR Q PG N++ K S + Y+HDTP Sbjct: 435 VMRGWNSKETIDPYRVDWSTITENNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPN 494 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF VR +SGCVRV +L LL+D W+ I + +K T V + +PV Sbjct: 495 HNLFQKDVRALSSGCVRVNKASELANMLLQDA-GWNDTRISDALKQGDTRYVNIRQNIPV 553 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 554 NLYYLTAFVDADGRTQYRTDIYNYD 578 >gi|260597325|ref|YP_003209896.1| murein L,D-transpeptidase [Cronobacter turicensis z3032] gi|260216502|emb|CBA29674.1| Uncharacterized protein ycbB [Cronobacter turicensis z3032] Length = 521 Score = 426 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 131/471 (27%), Positives = 202/471 (42%), Gaps = 70/471 (14%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 MVGYL+ N+ LY Y L ++N+ ++ N Sbjct: 76 MVGYLQFISGIPSQGNRWLYSEKPYKPEMPAL-------------NVLNQWQVALDNGSV 122 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+ + A ++ Q + WP++ + L G S V Sbjct: 123 PAFVRSLAPV---------HPHYAAMHASL--LQLVADTRPWPQMTGKEKLRPGQWSSDV 171 Query: 112 QRLRERLIISGDLD----------------------------PSKGLSVAFDAYVESAVK 143 L+E L +G LD K +D + +AVK Sbjct: 172 PALKEILQRTGMLDGGPDIVLPGDNNGVVSPSAASQPASQTSTPKPARAVYDKDLVAAVK 231 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 FQ GL G++ ST + +NV R L +N+ R++ LL K+ ++VNIP Sbjct: 232 RFQKWQGLGADGVIGQSTRDWLNVTPAQRAALLALNIQRLR-LLPGKLS-TGIMVNIPEY 289 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP Sbjct: 290 SLVYYQNGSPVLASRVIVGRPDRKTPLMSSALNNVVVNPPWNVPPTLARKDILPKVWNDP 349 Query: 264 QYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSR 318 YL+ + +++ G V VDW + P N FR Q PG N++ K S Sbjct: 350 GYLESHGYTVLNGWGSNADVVDPWMVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSS 409 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 + Y+HDTP LF R +SGCVRV +L LL+D W+ I + +K T Sbjct: 410 DAIYLHDTPNHNLFQRDSRALSSGCVRVNKASELANMLLQDA-GWNDSRISQTLKEGNTR 468 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD-NVHVGIIPLPEDHPI 428 V + +PV+ Y++A+ +D Q+R DIY D G LP+ + Sbjct: 469 YVNIPQTIPVNLYYLTAFIGEDGRPQYRTDIYNYDHTARSGAQILPKVEQL 519 >gi|238893981|ref|YP_002918715.1| hypothetical protein KP1_1925 [Klebsiella pneumoniae NTUH-K2044] gi|238546297|dbj|BAH62648.1| putative amidase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 596 Score = 426 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 123/445 (27%), Positives = 196/445 (44%), Gaps = 59/445 (13%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL + + LY Y + LS +IN+ ++ N Sbjct: 161 MMGYLHFISGIPTQGTRWLYSSTPYKMATPPLS-------------VINQWQLALDNGSL 207 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + +++ + WP++ L G S + Sbjct: 208 PAFIAGLAPR---------HPQYEAMHQSLLAL--VADSRPWPQMTGSGSLRPGEWSNDI 256 Query: 112 QRLRERLIISGDLDPSK-------------------GLSVAFDAYVESAVKLFQMRHGLD 152 LRE L +G L+ S +D + VK FQ GL Sbjct: 257 GALREILQRTGMLENSANIVLPGDVVSPSAKKKSKPAARGVYDRQLVEGVKRFQAMQGLG 316 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G++ ST + +NV R L +N+ R++ LL K+ ++VNIPA SL ++G Sbjct: 317 ADGVIGQSTRDWLNVSSAQRAGVLALNIQRLR-LLPGKLS-TGIMVNIPAFSLVYYQDGS 374 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R +P YL+ + Sbjct: 375 QVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNNPGYLEQHGYT 434 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + + VDW++ N FR Q PG N++ K S + Y+HDTP Sbjct: 435 VMRGWNSKETIDPYRVDWSTITENNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPN 494 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF VR +SGCVRV +L LL+D W+ I + +K T V + +PV Sbjct: 495 HNLFQKDVRALSSGCVRVNKASELANMLLQDA-GWNDTRISDALKQGDTRYVNIRQNIPV 553 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 554 NLYYLTAFVDADGRTQYRTDIYNYD 578 >gi|149915292|ref|ZP_01903820.1| peptidoglycan binding domain protein, putative [Roseobacter sp. AzwK-3b] gi|149811013|gb|EDM70852.1| peptidoglycan binding domain protein, putative [Roseobacter sp. AzwK-3b] Length = 536 Score = 426 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 108/377 (28%), Positives = 187/377 (49%), Gaps = 11/377 (2%) Query: 52 FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVS 110 NF+ +P S E ++ + + + RGGW P + + G S + Sbjct: 157 LTNFMQSSPSAFFRALPPQSNEYARLMKEKL-RLERLADRGGWGPTVSAESVKPGQSGAA 215 Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V LR+RL+ G LD S + +D + AV+ FQ+ HGL P G+ TL +NVPV Sbjct: 216 VTALRDRLVAMGFLDRSA--TQLYDETMLHAVQRFQLAHGLTPDGVAGPGTLAEINVPVQ 273 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQT 228 R++ L V + R + + +G R++LVN+ +++G V + V++G+ DR++ Sbjct: 274 ERLKSLIVAMERER-WINMALGERHILVNLTDFHARIIDDGAVSFETRVVIGKNTGDRRS 332 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P ++ ++ NP W +PRSI + + ++++P + ++ + + +G++V V++ Sbjct: 333 PEFSDEMDHMVINPTWHVPRSIAVGEYLPKMKRNPNAVS--HLKLYNNRGQQVSRGAVNF 390 Query: 289 NSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + NF F +Q P + NA+ K F ++ N Y+HDTP LF VR + GCVRV Sbjct: 391 AAYNASNFPFSIKQPPSQSNALGLVKFMFPNKYNIYLHDTPAKDLFGREVRAYSHGCVRV 450 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 + +L LL T + ++ T + V L VPVH +Y +A++ +Q+R Sbjct: 451 QKPFELAYELLSKQETDPKRTFHSILDTGREKRVNLEQVVPVHIIYRTAFTQAKGPVQYR 510 Query: 407 DDIYGLDNVHVGIIPLP 423 DIYG D + Sbjct: 511 RDIYGRDGRIWDALDKA 527 >gi|152969509|ref|YP_001334618.1| hypothetical protein KPN_00952 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954358|gb|ABR76388.1| putative amidase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 577 Score = 426 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 123/445 (27%), Positives = 195/445 (43%), Gaps = 59/445 (13%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL + + LY Y + LS +IN+ ++ N Sbjct: 142 MMGYLHFISGIPTQGTRWLYSSTPYKMATPPLS-------------VINQWQLALDNGSL 188 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + +++ + WP++ L G S + Sbjct: 189 PAFIAGLAPR---------HPQYEAMHQSLLAL--VADSRPWPQMTGSGSLRPGEWSNDI 237 Query: 112 QRLRERLIISGDLDPSK-------------------GLSVAFDAYVESAVKLFQMRHGLD 152 LRE L +G L S +D + VK FQ GL Sbjct: 238 GALREILQRTGMLKNSANIVLPGDVVSPSAKKKSKPAARGVYDRQLVEGVKRFQAMQGLG 297 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G++ ST + +NV R L +N+ R++ LL K+ ++VNIPA SL ++G Sbjct: 298 ADGVIGQSTRDWLNVSSAQRAGVLALNIQRLR-LLPGKLS-TGIMVNIPAFSLVYYQDGS 355 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R +P YL+ + Sbjct: 356 QVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNNPGYLEQHGYT 415 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + + VDW++ N FR Q PG N++ K S + Y+HDTP Sbjct: 416 VMRGWNSKETIDPYRVDWSTITENNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPN 475 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF VR +SGCVRV +L LL+D W+ I + +K T V + +PV Sbjct: 476 HNLFQKDVRALSSGCVRVNKASELANMLLQDA-GWNDTRISDALKQGDTRYVNIRQNIPV 534 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 535 NLYYLTAFVDADGRTQYRTDIYNYD 559 >gi|86138266|ref|ZP_01056840.1| peptidoglycan binding protein, putative [Roseobacter sp. MED193] gi|85824791|gb|EAQ44992.1| peptidoglycan binding protein, putative [Roseobacter sp. MED193] Length = 541 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 114/420 (27%), Positives = 194/420 (46%), Gaps = 17/420 (4%) Query: 13 CFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP---- 68 F + + + V + +V +R D+ A G+ + P Sbjct: 115 RDFGQVEAALSTAFVNYAAMVQTGLLKPSSIDSGMVRERRDHDGAAALAGMRDNQPFAYL 174 Query: 69 ---IISKETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDL 124 + + + + + + GGW P +P L G++ +V LR RLI G + Sbjct: 175 RTLVPASPQYRALMREKLRLEQLQAAGGWGPTVPGNKLEPGDTGTNVVALRNRLIALGYM 234 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + S S +D +E AV+ FQ HGL+ G+ TL+ +N PV R++ + + + R + Sbjct: 235 ERSATAS--YDRDMERAVESFQADHGLEVDGVAGGGTLKEINRPVRDRLKSVIIAMERER 292 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNP 242 L G R+VLVN + + ++NG V + ++G+ DR++P + ++ NP Sbjct: 293 WLTP-DRGERHVLVNQTDFTAKIIDNGDVTFETRSVIGKNQSDRRSPEFSDVMEHLVINP 351 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQ 300 W +PRSII K+ + LR +P + +I + D +G+ V VD++ +F F RQ Sbjct: 352 SWHVPRSIITKEYLPQLRNNPNAVS--HIQITDSRGRVVNRGSVDFSQYTARSFPFAMRQ 409 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P NA+ K F +++N Y+HDTP+ LF VR + GC+R+ + LL Sbjct: 410 PPSTRNALGLVKFIFPNKHNIYLHDTPQKSLFKREVRAFSHGCIRLAQPFEFAYALLAKQ 469 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 ++K+ K T V L +VPVH +Y +A+ +FR D+YG D + Sbjct: 470 TEDPIDFFHRILKSGKETKVDLEQQVPVHIIYRTAYVSNKGRAEFRRDVYGRDAKVWAAL 529 >gi|254476277|ref|ZP_05089663.1| peptidoglycan-binding domain 1 [Ruegeria sp. R11] gi|214030520|gb|EEB71355.1| peptidoglycan-binding domain 1 [Ruegeria sp. R11] Length = 539 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 106/410 (25%), Positives = 190/410 (46%), Gaps = 10/410 (2%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 ++ L + +DE I H + + Sbjct: 126 LVNYAADLQTGLLEPRRIDEGIVRKKHQPDFASYLTGIRDQAPVAFLRSLAPQNPQYQAL 185 Query: 79 EKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 + + + + GGW P + + L G+ +V LR RLI G L+ S S+ +D Sbjct: 186 LREKMRLEALQAAGGWGPTVSAKKLERGDQGGAVIALRNRLIEMGYLERSA--SLRYDTA 243 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 +E AV+ FQ HGL+ G+ + T+ +N PV R++ + V + R + L G R++L Sbjct: 244 LEGAVQKFQAAHGLEADGVAGAGTISEINKPVSARLKSVLVAMERERWLTP-DRGERHIL 302 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 VN + + ++NG+V ++ ++G+ DR++P + ++ NP W +PRSII K+ Sbjct: 303 VNQTDFTAKIIDNGEVTFQTRSVIGKDHSDRRSPEFSDVMEHMVINPSWYVPRSIITKEY 362 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKI 313 + L+ +P + +I + D +G++V D++ NF + RQ P + NA+ K Sbjct: 363 LPKLKANPNAV--GHIEITDSRGRKVNRSTADFSQYTARNFPYAMRQPPSRKNALGLVKF 420 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 F ++ N Y+HDTP+ LF VR + GC+R+ + LL + + ++ Sbjct: 421 MFPNKYNIYLHDTPQKSLFQREVRAFSHGCIRLAQPFEFAYALLAKQTENPKQFFDRILS 480 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 + K T V L +VPVH +Y +A+ + ++R D+YG D + Sbjct: 481 SGKETKVDLEQQVPVHLIYRTAFVTPEGRAEYRRDVYGRDAKVWAALERA 530 >gi|290510667|ref|ZP_06550037.1| ycbB [Klebsiella sp. 1_1_55] gi|289777383|gb|EFD85381.1| ycbB [Klebsiella sp. 1_1_55] Length = 596 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 123/445 (27%), Positives = 196/445 (44%), Gaps = 59/445 (13%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL + + LY Y + LS +IN+ ++ N Sbjct: 161 MMGYLHFISGIPTQGTRWLYSSTPYKMATPPLS-------------VINQWQLALDNGSL 207 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + +++ + WP++ L G S + Sbjct: 208 PVFIAGLAPH---------HPQYEAMHQSLLAL--VADSRPWPQMTGSGSLRPGEWSNDI 256 Query: 112 QRLRERLIISGDLDPSK-------------------GLSVAFDAYVESAVKLFQMRHGLD 152 LRE L +G LD + +D + VK FQ GL Sbjct: 257 GALREILQRTGMLDNTANIVLPGDVVSPSAKKKSKPAARGVYDRQLVEGVKRFQAMQGLG 316 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G++ ST + +NV R L +N+ R++ LL K+ ++VNIPA SL ++G Sbjct: 317 ADGVIGQSTRDWLNVSSAQRAGVLALNIQRLR-LLPGKLS-TGIMVNIPAFSLVYYQDGS 374 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 L S VIVGR DR+TP++ S +N ++ NP W +P ++ +KD++ +R +P YL+ + Sbjct: 375 QVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNNPGYLEQHGYT 434 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + + VDW++ N FR Q PG N++ K S + Y+HDTP Sbjct: 435 VMRGWNSKETIDPYRVDWSTITENNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPN 494 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF VR +SGCVRV +L LL+D W+ I + +K T V + +PV Sbjct: 495 HNLFQKDVRALSSGCVRVNKASELANMLLQDA-GWNDTRISDALKQGDTRYVNIRQNIPV 553 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLD 413 + Y++A+ D Q+R DIY D Sbjct: 554 NLYYLTAFVDADGRTQYRTDIYNYD 578 >gi|294677410|ref|YP_003578025.1| peptidoglycan-binding domain 1 protein [Rhodobacter capsulatus SB 1003] gi|294476230|gb|ADE85618.1| peptidoglycan-binding domain 1 protein [Rhodobacter capsulatus SB 1003] Length = 540 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 118/410 (28%), Positives = 189/410 (46%), Gaps = 10/410 (2%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDN-FLARVDMGIDSDIPIISKETIAQT 78 L + + +D I N LA A Sbjct: 126 LAWARDISSGALEPKKIDAGIVREIRRPDPQALLNGLLASPAPARFLRDLAPKSPRYAAL 185 Query: 79 EKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 KA Q ++ GGW PE+ + L G+S V LR+RLI G L + +S +D Sbjct: 186 VKARLDLQAEIATGGWGPEVAAKRLGPGDSGPGVIALRDRLIRMGYL--RRSVSATYDGD 243 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + AV+ +Q+ G+ G+ TL +N + R++ + V L R++ + +G R++ Sbjct: 244 LHRAVQTYQLDQGIKADGVAGEGTLARINRTPEERMKSILVALERLRWMNGLDLGKRHIW 303 Query: 198 VNIPAASLEAVENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 VN+P + V++GK+ + +VG + DR+TP + ++ NP W +PRSI K+ Sbjct: 304 VNLPDFTARIVDDGKMSFETVTVVGMNQGDRRTPEFSDVMEMMVINPSWSVPRSITVKEY 363 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKI 313 + +++++P +I ++D +G+ V E V++ + NF F RQ P NA+ K Sbjct: 364 LPMMQRNPG--AAGHIQLVDSRGRAVARESVNFAAYNARNFPFAMRQPPSNGNALGLVKF 421 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 F + N Y+HDTP LF VR + GC+RV DL LL + + V+K Sbjct: 422 LFPNPYNIYLHDTPSKSLFQKDVRAFSHGCIRVGRPFDLAYALLAAQEADPEGYFKSVLK 481 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 T T VKL VPVH VY +A+ I++RDD+YG D + Sbjct: 482 TGAETTVKLRDPVPVHLVYFTAFPNAQGRIEYRDDVYGRDAALFAALDKA 531 >gi|163736471|ref|ZP_02143890.1| Peptidoglycan-binding domain 1 [Phaeobacter gallaeciensis BS107] gi|161390341|gb|EDQ14691.1| Peptidoglycan-binding domain 1 [Phaeobacter gallaeciensis BS107] Length = 544 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 108/410 (26%), Positives = 184/410 (44%), Gaps = 10/410 (2%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 ++ L + +D+ I H + + Sbjct: 131 LVGYASDLQTGLLQPRQIDDGIVRKKHQPDFAAYLAGIRDQAPVAYLRSLAPQSAQYQAL 190 Query: 79 EKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 + + + GGW P++ + L G+S +V LR RLI G L S +D Sbjct: 191 LREKMRLEALQRAGGWGPQVAAKKLESGDSGPAVIALRNRLIAMGYLPRSAAR--RYDGA 248 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 +E AV+ FQ HGL G+ TL +N PV R++ + V + R + L ++ G R+VL Sbjct: 249 LERAVQAFQSDHGLTADGVAGGGTLAEINKPVSARLKSVLVAMERERWLTPER-GTRHVL 307 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 VN + + ++NG+V + ++G+ DR++P + ++ NP W +PRSI+ K+ Sbjct: 308 VNQTDFTAKIIDNGEVTFVTRSVIGKDNADRRSPEFSDEMEHMVINPSWYVPRSIVTKEY 367 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKI 313 + LR +P + +I + D +G++V D++ F F RQ P + NA+ K Sbjct: 368 LPKLRNNPNAV--GHIEITDSRGRKVNRATADFSKYTARTFPFAMRQPPSRKNALGLVKF 425 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 F ++ N Y+HDTP+ LF VR + GC+R+ + LL + ++ Sbjct: 426 MFPNKYNIYLHDTPQKSLFQREVRAFSHGCIRLAQPFEFAYALLARQTENPKDFFHRILN 485 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 + K T V L +VPVH +Y +A+ ++R DIYG D + Sbjct: 486 SGKETKVVLDQKVPVHIIYRTAFVTPKGQPEYRRDIYGRDAKVWAALERA 535 >gi|163743284|ref|ZP_02150665.1| peptidoglycan binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161383472|gb|EDQ07860.1| peptidoglycan binding protein, putative [Phaeobacter gallaeciensis 2.10] Length = 544 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 108/410 (26%), Positives = 184/410 (44%), Gaps = 10/410 (2%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 ++ L + +D+ I H + + Sbjct: 131 LVGYASDLQTGLLQPRQIDDGIVRKKHQPDFAAYLAGIRDQAPVAYLRSLAPQSAQYQAL 190 Query: 79 EKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 + + + GGW P++ + L G+S +V LR RLI G L S +D Sbjct: 191 LREKMRLESLQRAGGWGPQVAAKKLESGDSGPAVIALRNRLIAMGYLPRSAAR--RYDGA 248 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 +E AV+ FQ HGL G+ TL +N PV R++ + V + R + L ++ G R+VL Sbjct: 249 LERAVQAFQSDHGLTADGVAGGGTLAEINKPVSARLKSVLVAMERERWLTPER-GTRHVL 307 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 VN + + ++NG+V + ++G+ DR++P + ++ NP W +PRSI+ K+ Sbjct: 308 VNQTDFTAKIIDNGEVTFVTRSVIGKDNADRRSPEFSDEMEHMVINPSWYVPRSIVTKEY 367 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKI 313 + LR +P + +I + D +G++V D++ F F RQ P + NA+ K Sbjct: 368 LPKLRNNPNAV--GHIEITDSRGRKVNRATADFSKYTARTFPFAMRQPPSRKNALGLVKF 425 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 F ++ N Y+HDTP+ LF VR + GC+R+ + LL + ++ Sbjct: 426 MFPNKYNIYLHDTPQKSLFQREVRAFSHGCIRLAQPFEFAYALLARQTENPKDFFHRILN 485 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 + K T V L +VPVH +Y +A+ ++R DIYG D + Sbjct: 486 SGKETKVVLDQKVPVHIIYRTAFVTPKGQPEYRRDIYGRDAKVWAALERA 535 >gi|188584494|ref|YP_001927939.1| peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] gi|179347992|gb|ACB83404.1| Peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] Length = 602 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 135/358 (37%), Positives = 195/358 (54%), Gaps = 9/358 (2%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISG 122 + +P + +T T +A YQ GGW LP G+S ++ LR L ++G Sbjct: 125 EDPLPTYTAQTFVDTMRAAERYQVYAEAGGWKTLPADFAPKPGDSHPAIPSLRHHLTLTG 184 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DL S +D + +AVK FQ RHGL +G++ TL A+NVP D R RQL+ + R Sbjct: 185 DLPADAPPSDRYDPPLVAAVKAFQARHGLPDAGILGRLTLNALNVPADTRQRQLRASAQR 244 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + G RYV VNIP+A++EAVENG V R +VG D+QTP + +RI + NP Sbjct: 245 LMG-SNFGFGERYVTVNIPSATVEAVENGTVTRRYVAVVGSPDKQTPAVETRITDVNLNP 303 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P S+I+ +++ +R++P YL N I ++ G EV +DWN+ + N+ RQD Sbjct: 304 TWTVPVSVIRNEIIPTMRKNPGYLAKNRIRILGPGGVEVDPTTIDWNTQKAVNYTLRQDS 363 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ +I+ +R+ YMHDTP LF VRF + GCVRV + + WLL+ T Sbjct: 364 GLDNSLGQIRIDMPNRHAIYMHDTPSKSLFAGSVRFHSHGCVRVGQVKEFAAWLLQGTEG 423 Query: 363 -------WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W IE + + VKL PV FVY++ ++ D + FRDDIYGLD Sbjct: 424 PNGAGSTWGPIEIETAIAAGERRDVKLVKPTPVAFVYLTGYATSDGRVHFRDDIYGLD 481 >gi|307131496|ref|YP_003883512.1| putative carboxypeptidase [Dickeya dadantii 3937] gi|306529025|gb|ADM98955.1| predicted carboxypeptidase [Dickeya dadantii 3937] Length = 562 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 117/450 (26%), Positives = 204/450 (45%), Gaps = 55/450 (12%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GY++ N LY Y + ++ I + ++ + Sbjct: 132 MLGYMQFVAGVEKNGNSWLYSSVPYKLSMPSAAM-------------IEQWQQAVASGNG 178 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE-LPIRPLHLGNSSVSV 111 F+A + A+ A+ + WP+ + L G+ S ++ Sbjct: 179 LAFMASLAPR---------HSQYAKMHDALKTM--LTDNRPWPKLILADSLRPGDESSAL 227 Query: 112 QRLRERLIISGDLDPSKGL-------------SVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L+E L+ +G L+ + ++ V AVK FQ GL G++ Sbjct: 228 PVLKEILLRTGMLNQDGAAMPLFNEASSGNVSPLRYEGEVVEAVKRFQHSQGLQDDGVIG 287 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 T + +NV +R L +N+ R++ + ++ ++VNIP SL +NG L S Sbjct: 288 KRTRDWLNVSSQMRATLLALNIQRLRLVPDKV--SSGIVVNIPNYSLSYYQNGAEILSSR 345 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK- 277 VIVG+ R+TP+++S ++ ++ NP W +P ++ ++D++ + QDP YL+ + ++ + Sbjct: 346 VIVGQPKRKTPLMNSSLSNVVMNPPWNVPTTLTRQDIIPKVIQDPGYLQRHGYTVLSDWT 405 Query: 278 --GKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 + + +DW NF + RQ PG N++ K + + Y+HDTP LF Sbjct: 406 ESAQPIDPSMIDWPMVSAGNFPYRLRQAPGDSNSLGRYKFNMPNTDAIYLHDTPNHNLFQ 465 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 +R +SGCVRV +L LL+D W+ I ++ TT V + VPV+F Y+ Sbjct: 466 KDIRALSSGCVRVNKASELAALLLQDA-GWNNARISSTLEQGNTTYVAVRQRVPVNFYYL 524 Query: 394 SAWSPKDSIIQFRDDIYGLDN-VHVGIIPL 422 +AW D QFR DIY D+ V +G + L Sbjct: 525 TAWVADDGKPQFRTDIYNYDDTVKIGALAL 554 >gi|253688167|ref|YP_003017357.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754745|gb|ACT12821.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 576 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 116/455 (25%), Positives = 195/455 (42%), Gaps = 64/455 (14%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ N LY Y + L++V + + + +Y Sbjct: 136 MLGYLQFVSGVERNGNDWLYSSVPYRLQSPALNIVSQ--WQQAVKSGTSAAY-------- 185 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 + S P S A+ +A+ + WP L L S + Sbjct: 186 ----------VVSLAPQHS--QYAKMHEALKTM--LTDNRPWPSLNLTESLRPEQQSREL 231 Query: 112 QRLRERLIISGDLDPSKGLS-----------------------VAFDAYVESAVKLFQMR 148 LRE L +G L ++ ++ + + AVK FQ Sbjct: 232 AVLREILQRTGMLSSTESITLFNENTAATTIPTGQSPLVENGAAIYTGELVEAVKRFQHW 291 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 GL+ G++ T + +NV +R L +N+ R++ L + ++VNIP SL Sbjct: 292 QGLEDDGVIGKRTRDWLNVSPQMRATLLALNIQRLRLLPDNV--HTGIMVNIPNYSLIYY 349 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 ++G L S VIVG+ R+TP++ S + ++ NP W +P ++I++D++ + +DP YL+ Sbjct: 350 QDGAERLSSRVIVGQPKRKTPLMSSSLYNVVVNPPWNVPTTLIRQDIIPKVVRDPGYLQR 409 Query: 269 NNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYM 323 + ++ ++ + +DW P F + RQ PG N++ K + Y+ Sbjct: 410 HGYTVLSGWSQDAEVIDPSMIDWQIVSPERFPYRLRQAPGANNSLGRYKFNMPNSEAIYL 469 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 HDTP LF +R +SGCVRV +L LL+D W+ I + TT V + Sbjct: 470 HDTPNHNLFQRDIRALSSGCVRVNKASELASMLLQDA-GWNNSRISSTLDQGNTTFVSMK 528 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 +PV+ Y++AW +D QFR DIY D+ Sbjct: 529 HRIPVNLYYLTAWVAEDGRPQFRTDIYNYDDTARA 563 >gi|110804934|ref|YP_688454.1| hypothetical protein SFV_0927 [Shigella flexneri 5 str. 8401] gi|110614482|gb|ABF03149.1| putative amidase [Shigella flexneri 5 str. 8401] Length = 615 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 130/468 (27%), Positives = 197/468 (42%), Gaps = 82/468 (17%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPIKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLLYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + EVDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWEVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S Y+HDTP LF R +S CVRV DL LL+D W+ Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSDCVRVNKASDLANMLLQDA-GWND 549 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 I + K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 550 KRISDARKQGDTRYVNIRQSIPVNLYYLTAFVGADDRTQYRTDIYNYD 597 >gi|227329504|ref|ZP_03833528.1| hypothetical protein PcarcW_20031 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 579 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 114/458 (24%), Positives = 191/458 (41%), Gaps = 67/458 (14%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ N LY Y + L++V + + + +Y Sbjct: 136 MLGYLQFVSGVENSGNDWLYSSVPYRLQSPALNIVSQ--WQQAVKSGTSAAY-------- 185 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 + S P S A+ +A+ + WP L L S + Sbjct: 186 ----------VVSLAPQHS--QYAKMHEALKTM--LTDNRPWPSLSLAESLRPEQQSREL 231 Query: 112 QRLRERLIISGDLDPSKG--------------------------LSVAFDAYVESAVKLF 145 LRE L +G L ++ + + AVK F Sbjct: 232 AVLREILQRTGMLSSTESITLFNENTAATTVSTGQVPLVDGSGTSDDRYTGELVDAVKRF 291 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 Q GL+ G++ T + +NV +R L +N+ R++ L + ++VNIP SL Sbjct: 292 QHWQGLEDDGVIGKRTRDWLNVSPQMRATLLALNIQRLRLLPDNV--HTGIMVNIPNYSL 349 Query: 206 EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 ++G L S VIVG+ R+TP++ S + ++ NP W +P ++ ++D++ + +DP Y Sbjct: 350 IYYQDGAERLSSRVIVGQPKRKTPLMSSSLYNVVVNPPWNVPTTLTRQDIIPKVVRDPGY 409 Query: 266 LKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 L+ + ++ ++ + +DW F + RQ PG N++ K + Sbjct: 410 LQRHGYTVLSGWSQDAEAIDPSMIDWQMVSAERFPYRLRQAPGANNSLGRYKFNMPNSEA 469 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+HDTP LF +R +SGCVRV +L LL+D W+ I + TT V Sbjct: 470 IYLHDTPNHNLFQRDIRALSSGCVRVNKASELASMLLQDA-GWNNSRISSTLDQGNTTFV 528 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 + +PV+ Y++AW +D QFR DIY D+ Sbjct: 529 SMKHRIPVNLYYLTAWVAEDGRPQFRTDIYNYDDTARA 566 >gi|242239070|ref|YP_002987251.1| hypothetical protein Dd703_1632 [Dickeya dadantii Ech703] gi|242131127|gb|ACS85429.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech703] Length = 564 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 118/442 (26%), Positives = 198/442 (44%), Gaps = 54/442 (12%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 ++GY++ + LY Y + S+V + + E Sbjct: 134 LLGYMQFVAGVEKNGSHWLYGNVSYTLAAPPSSMVAQ--WQQAIHE-------------- 177 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 + S P S A+ +A+ + WP L + L G+ S ++ Sbjct: 178 ----GSSAAFVASLAPRHS--QYAKMHQALKDM--LTDNRPWPRLVLGETLRPGDESPAL 229 Query: 112 QRLRERLIISGDLD-------------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 LR+ L+ +G L+ PS ++ +D + AVK FQ GL G + Sbjct: 230 PVLRDILLRTGALNQGNVSMPLFNEAQPSGPEALRYDGELVEAVKRFQRLQGLQDDGSIG 289 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 T + +NV R L +N+ R++ + + ++VNIP SL NG V L S Sbjct: 290 KRTRDWLNVSSQTRATLLALNIQRLRLVPDNV--NTGIMVNIPNYSLSYYLNGSVILSSR 347 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 VIVG+ R+TP++ S ++ ++ NP W +P ++ ++D++ + QDP YL+ + ++ Sbjct: 348 VIVGQPKRKTPLMSSSLSNVVMNPPWNVPTTLTRQDIIPKVIQDPAYLQKHGYVLLSGWS 407 Query: 279 ---KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 +++ +DW NF + RQ PG N++ K + + Y+HDTP LF Sbjct: 408 EDAQQIDPAMIDWPMVSANNFPYRLRQAPGDNNSLGRYKFNMPNTDAIYLHDTPNHNLFQ 467 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 +R +SGCVRV +L LL+D W+ I ++ TT V + +PV+F Y+ Sbjct: 468 KDIRALSSGCVRVNKASELAALLLQDA-GWNNARISSTLEQGNTTYVSIRQRIPVNFYYL 526 Query: 394 SAWSPKDSIIQFRDDIYGLDNV 415 +AW D QFR DIY D+ Sbjct: 527 TAWVADDGKPQFRTDIYNYDDT 548 >gi|154253343|ref|YP_001414167.1| peptidoglycan-binding domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154157293|gb|ABS64510.1| Peptidoglycan-binding domain 1 protein [Parvibaculum lavamentivorans DS-1] Length = 399 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 142/377 (37%), Positives = 207/377 (54%), Gaps = 7/377 (1%) Query: 44 YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-L 102 + +A S P++S ET+ AI Y+ I + GGW + L Sbjct: 15 WVDPWQAETGAAVAEAPPFERSSAPVLSAETLLPLTHAIETYRVIANLGGWGYVASGERL 74 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 LG V ++RERL +GDL + +DA V AV+ +Q+R+GL+P G+V T+ Sbjct: 75 ELGVRDPRVVQVRERLTATGDLTVPAQDAELYDANVYEAVRRYQVRNGLEPDGIVGRRTI 134 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 AMNV V RIRQL++NL R+ + + RYV VNI +EAV NG V R VIVG Sbjct: 135 AAMNVRVQTRIRQLELNLRRLSAAVPA-LPDRYVFVNIAGQEVEAVNNGIVEFREPVIVG 193 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---K 279 + DRQTP + S +N I FNPYW +P+SI DM+ +R +P YL+ I ++ + Sbjct: 194 KQDRQTPEITSEVNSITFNPYWYVPKSIAMADMLPKIRANPDYLQRQGIRVLQGWDTNIR 253 Query: 280 EVFVEEVDWNSPEPPN-FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 E+ +DW++P + FRQDPG N++ S KI F + ++HDTP LF R Sbjct: 254 ELNPRNIDWSNPRINEAYYFRQDPGPGNSLGSLKINFPNNQAIFLHDTPTKTLFGRQERN 313 Query: 339 ETSGCVRVRNIIDLDVWLLK-DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGCVRV+N+ L WL++ D+ W + V +R+ V LAT VP++ +Y++AW Sbjct: 314 FSSGCVRVQNVRGLVSWLMQGDSSEWDAARVARSVDSRQYRNVSLATPVPIYLMYLTAWV 373 Query: 398 PKDSIIQFRDDIYGLDN 414 + I+ FRDD+Y D Sbjct: 374 TPEGIVNFRDDVYDRDG 390 >gi|251789271|ref|YP_003003992.1| hypothetical protein Dd1591_1660 [Dickeya zeae Ech1591] gi|247537892|gb|ACT06513.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya zeae Ech1591] Length = 563 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 118/451 (26%), Positives = 200/451 (44%), Gaps = 56/451 (12%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ LY Y + ++ I + +I + Sbjct: 132 MLGYLQFVAGVEKNGGNWLYGSVPYKLAAPSAAM-------------IEQWQQAITSGNG 178 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + + A+ + WP+L L G+ S ++ Sbjct: 179 AAFIASLAPR---------HSQYEKMHTALKNM--LTDNRPWPKLVLADSLRPGDESNAL 227 Query: 112 QRLRERLIISGDLDPS--------------KGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L+E L+ +G L ++ +D + AVK FQ GL G++ Sbjct: 228 PVLQEILLRTGMLSQDSAAMPLFNDATAAGNTAALRYDGEMVEAVKRFQHSQGLLDDGVI 287 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 T + +NV +R L +N+ R++ + ++ ++VNIP SL +NG L S Sbjct: 288 GKRTRDWLNVSSQMRAALLALNIQRLRLVPDKV--SSGIVVNIPNYSLSYYQNGAEILSS 345 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 VIVG+ R+TP++ S ++ ++ NP W +P ++ ++D++ + QDP YL+ + ++ Sbjct: 346 RVIVGQPKRKTPLMSSSLSNVVMNPPWNVPTTLTRQDIIPKVIQDPGYLQRHGYTVLSGW 405 Query: 278 ---GKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 + + +DW NF + RQ PG N++ K + ++ Y+HDTP LF Sbjct: 406 TDSAQPIDPSMIDWPMMSAGNFPYRLRQAPGDSNSLGRYKFNMPNTDSIYLHDTPNHNLF 465 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 +R +SGCVRV +L LL+D W+ I ++ TT V + VPV+F Y Sbjct: 466 QKDIRALSSGCVRVNKASELAALLLQDA-GWNNARISSTLEQGNTTYVAVRQRVPVNFYY 524 Query: 393 ISAWSPKDSIIQFRDDIYGLDN-VHVGIIPL 422 ++AW D QFR DIY D+ V G + L Sbjct: 525 LTAWVADDGKPQFRTDIYNYDDTVKTGTLAL 555 >gi|271500170|ref|YP_003333195.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech586] gi|270343725|gb|ACZ76490.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech586] Length = 567 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 115/452 (25%), Positives = 205/452 (45%), Gaps = 55/452 (12%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GY++ N LY Y + +++ + + ++ + Sbjct: 137 MLGYMQFVAGVEKNGNSWLYGSVPYKLALPPVAM-------------MEQWQRAMASGNG 183 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A+ A+ ++ + WP+L L G+ S + Sbjct: 184 AAFIASLAPH---------HSQYAKMHVALKDM--LMDKRPWPKLMLADSLRPGDESNGL 232 Query: 112 QRLRERLIISGDLD-------------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 LRE L+ +G L P + ++ + AVK FQ GL G++ Sbjct: 233 PVLREILLRTGMLSQNSAAMPLFNEASPGNASPLRYEGELVEAVKRFQHSQGLQDDGVIG 292 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 T + +NV +R L +N+ R++ + + ++VNIP SL ++G L S Sbjct: 293 KRTRDWLNVSSQMRATLLALNIQRLRLVPDNVNSG--IMVNIPNYSLIYYQHGAEILSSR 350 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK- 277 VIVG+ R+TP++ + ++ ++ NP W +P ++ ++D++ + QDP YL+ + ++ + Sbjct: 351 VIVGQPKRKTPLMSTSLSNVVMNPPWNVPTTLTRQDIIPKVIQDPGYLQRHGYTVLSDWT 410 Query: 278 --GKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 + + +DW NF + RQ PG N++ K + ++ Y+HDTP LF Sbjct: 411 ESAQPIDPSMIDWPMVSASNFPYRLRQAPGDSNSLGRYKFNIPNTDSIYLHDTPNHALFQ 470 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 +R +SGCVRV +L LL+D W+ I ++ TT V + +PV+F Y+ Sbjct: 471 KDIRALSSGCVRVNKASELAALLLQDA-GWNNARISSTLEQGNTTYVAVRQRIPVNFYYL 529 Query: 394 SAWSPKDSIIQFRDDIYGLDN-VHVGIIPLPE 424 +AW D QFR DIY D+ V G + L + Sbjct: 530 TAWVADDGKPQFRTDIYNYDDTVKTGALALSK 561 >gi|193212014|ref|YP_001997967.1| peptidoglycan-binding domain 1 protein [Chlorobaculum parvum NCIB 8327] gi|193085491|gb|ACF10767.1| Peptidoglycan-binding domain 1 protein [Chlorobaculum parvum NCIB 8327] Length = 583 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 122/406 (30%), Positives = 201/406 (49%), Gaps = 32/406 (7%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL 102 ++++ +F +A + S K +A Y+ + + GGW +P P Sbjct: 174 LKSAVMDAKFPEMIASLRP---------STPEYRLLRKGLAKYRKVAAAGGWKPVPAGP- 223 Query: 103 HLGNS---SVSVQRLRERLIISGDL---------------DPSKGLSVAFDAYVESAVKL 144 +G+ + +R+RL+++GDL + + + A + AVK Sbjct: 224 RIGDVGQIDERMPLIRKRLVVTGDLIEDGLTISAPANSADSTAARQAFVYTAELFDAVKA 283 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ RHGL+ G++ + T AM VPV+ I Q+++NL R + +G YV+VNIP+ S Sbjct: 284 FQERHGLEVDGIIGTETAGAMAVPVEEWIDQIRINLERYR-WYSSSLGSTYVMVNIPSFS 342 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 +E V + V +S VIVG+ + QTP+ + I ++FNP WVIP I+ K+ + ++++ Sbjct: 343 VEFVRDDSVRWKSRVIVGKPNLQTPVFKAEIQSVIFNPRWVIPSGILAKEALPAIKKNLD 402 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTY 322 YL + + +++ +GK V V+W + + F +R Q G A+ K +R Y Sbjct: 403 YLSRHQLTVVNNQGKPVDPSSVNWAAYQGRGFPYRLVQASGDDGALGRIKFNMPNRFTVY 462 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL 382 MHDTP LF R + GCVRV+N +L V L D W IE ++ T KT + L Sbjct: 463 MHDTPTKPLFERSYRAFSHGCVRVQNPNELGVLLFNDPVKWDMNRIEAMIDTGKTRTINL 522 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPI 428 +PV+F+Y +A+ D+ I FR D+Y D + + I Sbjct: 523 PERIPVYFMYQTAFPDGDN-IDFRYDVYDRDPDLQKALDSTRERVI 567 >gi|317491480|ref|ZP_07949916.1| ykud domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921027|gb|EFV42350.1| ykud domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 608 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 124/463 (26%), Positives = 190/463 (41%), Gaps = 67/463 (14%) Query: 13 CFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVDMGIDSDIPIIS 71 YL G+S + S + I E ++VN+ + R+ + S P S Sbjct: 136 AMLGYLQFVSGVSATKGSWLYSSVPYAIAEPPATLVNNWQLSVRDGRLATFVQSLAP--S 193 Query: 72 KETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLD----- 125 A KA+ + WP + P L G+ S + LRE L +G L Sbjct: 194 HPQYAAMHKALKDL--LADTRPWPTVNDGPSLKPGDLSPDMPALREVLQRTGMLTEKGNV 251 Query: 126 ------------------------------------------------PSKGLSVAFDAY 137 P + Sbjct: 252 KSPTPVPEAQPLQSPASQEPNAVISPSTTAVSELTQQPTPEATPAKTMPVSATDNRYTPE 311 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + AVK FQ GL G++ T E +NV R L +N+ R++ L + ++ Sbjct: 312 LVEAVKRFQQWQGLASDGVIGKRTREWLNVSPQTRATLLALNIQRLRILPGEV--DTGIM 369 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VNIP SL +NG L S VIVGR R+TP+++S +N ++ NP W +P ++I++D++ Sbjct: 370 VNIPNYSLIYYQNGTEVLTSRVIVGRPTRKTPLMNSELNNVVVNPPWNVPTTLIREDIVP 429 Query: 258 LLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTK 312 +DP Y + + + + V +DW S P NF +R Q PG N++ K Sbjct: 430 KAMRDPGYFERHGYRLFSGWSNDAEVVDPYMIDWASVSPRNFPYRIQQAPGVNNSLGRYK 489 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 S++ Y+HDTP LF +R +SGCVRV L LL+D W+ + + Sbjct: 490 FNMPSQDAIYLHDTPNHGLFEKDIRALSSGCVRVNKASTLANMLLQDA-GWNDARVSSAL 548 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 K T V + +PV Y++AW +D QFR DIY D+ Sbjct: 549 KEGNTKYVPIRHRIPVRLYYLTAWVSEDGKPQFRTDIYNYDDT 591 >gi|227111943|ref|ZP_03825599.1| hypothetical protein PcarbP_03208 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 578 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 114/457 (24%), Positives = 193/457 (42%), Gaps = 66/457 (14%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ N LY Y + L++V + + + +Y Sbjct: 136 MLGYLQFVSGVERSGNDWLYSSVPYRLQSPTLNVVSQ--WQQAVKSGTSAAY-------- 185 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 + S P S A+ +A+ + WP L L S + Sbjct: 186 ----------VVSLAPQHS--QYAKMHEALKTM--LTDNRPWPSLNLAESLRPEQQSREL 231 Query: 112 QRLRERLIISGDLDPSKGLS-------------------------VAFDAYVESAVKLFQ 146 LRE L +G L ++ ++ + + AVK FQ Sbjct: 232 AVLREILQRTGMLSSTESITLFNENTAATTVSTGQAPLVEGGAIDDRYTGELVDAVKRFQ 291 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 GL+ G++ T + +NV +R L +N+ R++ L + ++VNIP SL Sbjct: 292 HWQGLEDDGVIGKRTRDWLNVSPQMRATLLALNIQRLRLLPDNV--HTGIMVNIPNYSLI 349 Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 ++G L S VIVG+ R+TP++ S + ++ NP W +P ++ ++D++ + +DP YL Sbjct: 350 YYQDGAERLSSRVIVGQPKRKTPLMSSSLYNVVVNPPWNVPTTLTRQDIIPKVVRDPGYL 409 Query: 267 KDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNT 321 + + ++ ++ + +DW F + RQ PG N++ K + Sbjct: 410 QRHGYTVLSGWSQDAEAIDPSMIDWPMVSAERFPYRLRQAPGANNSLGRYKFNMPNSEAI 469 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK 381 Y+HDTP LF +R +SGCVRV +L LL+D W+ I + TT V Sbjct: 470 YLHDTPNHNLFQRDIRALSSGCVRVNKASELASMLLQDA-GWNNSRISSTLDQGNTTFVS 528 Query: 382 LATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 + +PV+ Y++AW +D QFR DIY D+ Sbjct: 529 MKHRIPVNLYYLTAWVAEDGRPQFRTDIYNYDDTARA 565 >gi|84684826|ref|ZP_01012726.1| peptidoglycan binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84667161|gb|EAQ13631.1| peptidoglycan binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 539 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 108/415 (26%), Positives = 186/415 (44%), Gaps = 11/415 (2%) Query: 14 FFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE 73 L L + + + +D+ I ++ E Sbjct: 122 DLSKLFLTYAKYIQTGILTPAAVDDGIKREVPLKDRTELLKAFSQAQPAPFLRTLPPKSE 181 Query: 74 TIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 A+ + + + + GGW P + L G+ +V +LR RL+ G +D S + Sbjct: 182 EYARLMREKLRLERVRAEGGWGPTVQAGSLRPGDQGQAVIQLRNRLVTMGYMDRSA--TQ 239 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D ++ AV+ FQ HGL G+ T++A+N PV+ R+ ++ V + R + + + G Sbjct: 240 TYDENIQRAVQRFQTNHGLTADGVAGGDTVKAINTPVEDRLERIIVAMERER-WMNIERG 298 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSI 250 RYV VN+ + V+ GKV + +VG+ +TP + ++ NP W +PRSI Sbjct: 299 DRYVWVNLTTFTARVVDGGKVTFETRSVVGQNLSTHRTPEFSDMMEHMVINPSWYVPRSI 358 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAM 308 I + + LR + ++ + D +G+ V D++ NF F RQ PG NA+ Sbjct: 359 IVNEYLPALRANSG--AAGHLLITDARGRTVSRAT-DFSQYSARNFPFDMRQPPGPGNAL 415 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K F ++ N Y+HDTP LF VR + GCVR++ D +L Sbjct: 416 GYVKFMFPNQYNIYLHDTPSKSLFGREVRTFSHGCVRLQQPFDFAYTMLAPQEADPEGFF 475 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 + +++T + T V+L VPVH VY +A++ + +R+D+YG D + Sbjct: 476 QSILRTGQETKVELDEPVPVHLVYRTAFTDTRGEMNYRNDMYGRDARIWAALQAA 530 >gi|90022535|ref|YP_528362.1| hypothetical protein Sde_2893 [Saccharophagus degradans 2-40] gi|89952135|gb|ABD82150.1| Peptidoglycan-binding domain 1 [Saccharophagus degradans 2-40] Length = 563 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 114/375 (30%), Positives = 183/375 (48%), Gaps = 16/375 (4%) Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDIL---------SRGGWPELPIRP-LHLGNSSVS 110 + S++PI + + Y ++ W L + P + G + Sbjct: 191 TKVASNVPI--ADIVQSLRPRQPRYARLVKTLAWLNSTQAPDWEPLALSPAIKKGMADTR 248 Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 + + ERL GDL S+ ++ + AV FQ RHGL+P G+V +TL A+NV Sbjct: 249 LSPIAERLRFWGDLSESEETFTHYEGELMEAVTRFQRRHGLEPDGVVGKNTLLALNVSPV 308 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 R + VNL R + L+Q MG +++VNI L ++ ++ ++ VIVGR R+TP+ Sbjct: 309 QRANDVVVNLERWR-WLDQNMGDYFIVVNIANFDLRVYKSNELVMQKPVIVGRNYRKTPV 367 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-EKGKEVFVEEVDWN 289 +I ++FNP W +P+ + +D + +++D YL+ + + V +V+W+ Sbjct: 368 FSDKIRFLVFNPTWTVPQKLAVQDKLPEIKKDISYLEKYGFTLYALGENTVVNPADVEWD 427 Query: 290 SPEPP-NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + Q PG +NA+ K F + + Y+HDTP LF+ R +SGC+RV + Sbjct: 428 KLHKRFPYRMVQAPGPLNALGQVKFMFPNAYDVYLHDTPSRELFSKTERAFSSGCIRVSD 487 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 I+L LL+ I EV+ + KTT V L T VPVH Y +AW +QFR+D Sbjct: 488 PIELASKLLEPN-GMGIDQINEVLSSAKTTTVNLKTPVPVHIEYWTAWVDSSGKLQFRND 546 Query: 409 IYGLDNVHVGIIPLP 423 IY D + LP Sbjct: 547 IYERDKPLFSALTLP 561 >gi|226330682|ref|ZP_03806200.1| hypothetical protein PROPEN_04602 [Proteus penneri ATCC 35198] gi|225201477|gb|EEG83831.1| hypothetical protein PROPEN_04602 [Proteus penneri ATCC 35198] Length = 575 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 121/431 (28%), Positives = 200/431 (46%), Gaps = 30/431 (6%) Query: 2 VGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDM 61 +GY+ + + L+ ++ P +SV+ E +I N+ +F Sbjct: 155 LGYISFVEQVNKSGTSLLYRSATQVLSAPSDSSVI-----ELQQNIQNNTLGSF------ 203 Query: 62 GIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLII 120 + S P S A ++ + + + S WPE+ L SS V LR+ L Sbjct: 204 -VISYAP--SHPYYALMKEELR--KQLHSSVVWPEMKGTTSLKPNQSSQEVVPLRQILRN 258 Query: 121 SGDLDP-----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 + + + +DA + +AVKLFQ HGL+P G++ T +N+ R Sbjct: 259 LKLIPELAVNEQEIATTVYDASLVAAVKLFQTAHGLEPDGIIGRQTRTWLNITPAQRASI 318 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 + +N+ R++ L +G + VNIP SL N ++ L S VIVGR DR+TPI+ S + Sbjct: 319 MALNIQRLR--LTPAIGDTGIWVNIPDFSLYFYANNELILDSKVIVGRPDRKTPIMSSAL 376 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPE 292 N ++ NP W +P S+ +KD++ + DP Y + G + + ++DW + Sbjct: 377 NNVVVNPPWNVPTSMTRKDIVPRGKADPSYFSRKGYTIYSGWGNDAYPINPYDIDWQNVS 436 Query: 293 PPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 NF +R Q PG N++ K + + Y+HDTP LF+ +R +SGC+RV Sbjct: 437 ANNFPYRIWQAPGPTNSLGRYKFNMPNSDAIYLHDTPNHSLFSKNMRAISSGCIRVNKAS 496 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 +L LL D W + I+ +K T + +PV+ Y +AW +++ Q+R DIY Sbjct: 497 ELASILLGDA-GWKQDRIDAALKRGSTQYAPIPERIPVYLYYQTAWVAQENAPQYRADIY 555 Query: 411 GLDNVHVGIIP 421 G D P Sbjct: 556 GYDKSISNAEP 566 >gi|110679848|ref|YP_682855.1| peptidoglycan binding domain-containing protein [Roseobacter denitrificans OCh 114] gi|109455964|gb|ABG32169.1| peptidoglycan binding domain protein, putative [Roseobacter denitrificans OCh 114] Length = 537 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 107/377 (28%), Positives = 182/377 (48%), Gaps = 11/377 (2%) Query: 52 FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVS 110 NF G +P + E A ++ + + ++++GGW P + + L G+ S Sbjct: 158 LTNFAKSSPKGFFKALPPQTGEYNALMKQKLVL-EGLVAKGGWGPTVKAKKLEPGDQGAS 216 Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V LR+RLI G L S + +DA + +AV FQ HGL G+V TL +N V Sbjct: 217 VVALRDRLIRMGYLKRSAAST--YDAAMTAAVVRFQADHGLAQDGIVGRGTLAEINTSVR 274 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQT 228 R++ + V + R + + ++ G R++ VN+ + + ++ GKV + ++G D RQ+ Sbjct: 275 KRLQAVIVAMERER-WVNKERGTRHIEVNLTDFTAKIIDKGKVTFSTRSVIGARDAKRQS 333 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P + ++ NP W +PRSI + + L+QDP + N++ + D G+++ VD+ Sbjct: 334 PEFSDVMEFMVINPSWFVPRSIATGEYLPELQQDPNAV--NHLIITDRSGRQIDRANVDF 391 Query: 289 NSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 F + RQ P + NA+ K F ++ N Y+HDTP LF R + GC+R+ Sbjct: 392 TKYTERTFPYAMRQPPSRSNALGLVKFMFPNKYNIYLHDTPAKNLFGRETRAYSHGCIRL 451 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 + + LL ++ + T K T + L VPVH +Y +A + IQ+R Sbjct: 452 ADPFEFAYALLAKQSGDPEGLFQKTLATGKETQLNLKKPVPVHIIYRTAVADSKGRIQYR 511 Query: 407 DDIYGLDNVHVGIIPLP 423 D+YG D + Sbjct: 512 RDVYGRDGRIWEALSQA 528 >gi|240141625|ref|YP_002966105.1| putative peptidoglycan-binding protein (N-terminal domain) [Methylobacterium extorquens AM1] gi|240011602|gb|ACS42828.1| putative peptidoglycan-binding protein (N-terminal domain) [Methylobacterium extorquens AM1] Length = 586 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 136/358 (37%), Positives = 195/358 (54%), Gaps = 9/358 (2%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISG 122 + +P + +T T +A YQ GGW LP G+S ++ LR L ++G Sbjct: 124 EDPLPSYTAQTFVDTMRAAERYQVYAEAGGWKTLPADFAPKPGDSHAAIPSLRHHLTLTG 183 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DL S FD + +AVK FQ RHGL +G+ TL A+NVP D+R RQL+ + R Sbjct: 184 DLPADAPPSDRFDPPLVAAVKSFQARHGLPDAGIFGRLTLNALNVPADVRQRQLRASAQR 243 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + G RYV VNIP+A++EAVENG V R +VG D+QTP + +RI + NP Sbjct: 244 LMG-SNFGFGERYVTVNIPSATVEAVENGAVTRRYVAVVGSPDKQTPAVETRITDVNLNP 302 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P S+I+ +++ +R++P YL N I ++ G EV +DWN+ + N+ RQD Sbjct: 303 TWTVPVSVIKNEIIPTMRKNPGYLAKNRIRILGPGGVEVDPNAIDWNTQKATNYTLRQDS 362 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ +I+ +R+ YMHDTP LF VRF + GCVRV + + WLL+ T Sbjct: 363 GLDNSLGQVRIDMPNRHAIYMHDTPSKSLFAGSVRFHSHGCVRVGQVKEFAAWLLQGTEG 422 Query: 363 -------WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W IE + + VKL PV FVY++ ++ D + FRDDIYGLD Sbjct: 423 PNGPGSAWGPIEIETAIAVGERRDVKLVKPTPVAFVYMTGYATSDGRVHFRDDIYGLD 480 >gi|254564132|ref|YP_003071227.1| peptidoglycan-binding protein [Methylobacterium extorquens DM4] gi|254271410|emb|CAX27423.1| putative peptidoglycan-binding protein (N-terminal domain) [Methylobacterium extorquens DM4] Length = 586 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 136/358 (37%), Positives = 195/358 (54%), Gaps = 9/358 (2%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISG 122 + +P + +T T +A YQ GGW LP G+S ++ LR L ++G Sbjct: 124 EDPLPSYTAQTFVDTMRAAERYQVYAEAGGWKTLPADFAPKPGDSHAAIPSLRHHLTLTG 183 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DL S FD + +AVK FQ RHGL +G+ TL A+NVP D+R RQL+ + R Sbjct: 184 DLPADAPPSDRFDPPLVAAVKSFQARHGLPDAGIFGRLTLNALNVPADVRQRQLRASAQR 243 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + G RYV VNIP+A++EAVENG V R +VG D+QTP + +RI + NP Sbjct: 244 LMG-SSFGFGERYVTVNIPSATVEAVENGTVTRRYVAVVGSPDKQTPAVETRITDVNLNP 302 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P S+I+ +++ +R++P YL N I ++ G EV +DWN+ + N+ RQD Sbjct: 303 TWTVPVSVIKNEIIPTMRKNPGYLAKNRIRILGPGGVEVDPNAIDWNTQKATNYTLRQDS 362 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ +I+ +R+ YMHDTP LF VRF + GCVRV + + WLL+ T Sbjct: 363 GLDNSLGQVRIDMPNRHAIYMHDTPSKSLFAGSVRFHSHGCVRVGQVKEFAAWLLQGTEG 422 Query: 363 -------WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W IE + + VKL PV FVY++ ++ D + FRDDIYGLD Sbjct: 423 PNGPGSAWGPIEIETAIAVGERRDVKLVKPTPVAFVYMTGYATSDGRVHFRDDIYGLD 480 >gi|50121470|ref|YP_050637.1| hypothetical protein ECA2546 [Pectobacterium atrosepticum SCRI1043] gi|49611996|emb|CAG75445.1| putative exported protein [Pectobacterium atrosepticum SCRI1043] Length = 580 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 116/459 (25%), Positives = 188/459 (40%), Gaps = 68/459 (14%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ N LY Y + ++V + + Sbjct: 136 MLGYLQFVSGVERSGNDWLYSNVPYRLQSPAANIVAQ--WQQAVK--------------- 178 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 L + S P S A+ +A+ + WP L L S + Sbjct: 179 ---LGTSAAYVLSLAPQHS--QYAKMHEALKTM--LTDNRPWPSLNLTESLRPEQQSQGL 231 Query: 112 QRLRERLIISGDL---------------------------DPSKGLSVAFDAYVESAVKL 144 LRE L +G L D + + + AVK Sbjct: 232 TVLREILQRTGMLSSTESITLFNENTAATTTSLTGQAPVVDGTTNADDRYTGELVDAVKR 291 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ GL+ G++ T + +NV +R L +N+ R++ L ++VNIP S Sbjct: 292 FQHWQGLEDDGVIGKRTRDWLNVSPQMRATLLALNIQRLRLLPGNV--HTGIMVNIPNYS 349 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L ++G L S VIVG+ R+TP++ S + ++ NP W +P ++I++D++ + +DP Sbjct: 350 LIYYQDGAERLSSRVIVGQPKRKTPLMSSSLYNVVVNPPWNVPTTLIRQDIIPKVVRDPG 409 Query: 265 YLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRN 319 YL + ++ ++ + +DW P F + RQ PG N++ K + Sbjct: 410 YLARHGYTVLSGWSQDAEVIDPSMIDWQVVSPERFPYRLRQAPGANNSLGRYKFNMPNSE 469 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 Y+HDTP LF +R +SGCVRV +L LL+D W+ I + TT Sbjct: 470 AIYLHDTPNHNLFQRDIRALSSGCVRVNKASELASMLLQDA-GWNNNRISSTLDQGNTTF 528 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 V + +PV+ Y++AW +D QFR DIY D+ Sbjct: 529 VSMKHRIPVNLYYLTAWVAEDGRPQFRTDIYNYDDTARA 567 >gi|261821332|ref|YP_003259438.1| hypothetical protein Pecwa_2052 [Pectobacterium wasabiae WPP163] gi|261605345|gb|ACX87831.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium wasabiae WPP163] Length = 575 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 114/466 (24%), Positives = 195/466 (41%), Gaps = 69/466 (14%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ N LY Y + +++V + ++ + +Y Sbjct: 131 MLGYLQFVSGVERNGNNWLYSSVPYRLQSPAVNIVSQ--WQQAVNSGTSAAY-------- 180 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 + S P S A+ +A+ + WP L L S + Sbjct: 181 ----------VASLTP--SHSQYAKMHEALKTM--LTDNRPWPSLNLAESLRPEQQSREL 226 Query: 112 QRLRERLIISGDLDPS---------------------------KGLSVAFDAYVESAVKL 144 LRE L +G L + + + AVK Sbjct: 227 VALREILQRTGMLSLTESITLFNENVSATTTPLTEQTPVDNGVANADDRYSGDLVEAVKR 286 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ GL+ G++ T + +NV +R L +N+ R++ + + ++VNIP S Sbjct: 287 FQHWQGLEGDGVIGKRTRDWLNVSPQMRATLLALNIQRLRLVPDNV--HTGIMVNIPNYS 344 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L ++G L S VIVG+ R+TP++ S + ++ NP W +P ++ ++D++ + +DP Sbjct: 345 LIYYQDGAERLSSRVIVGQPKRKTPLMSSSLYNVVVNPPWNVPTTLTRQDIIPKVVRDPG 404 Query: 265 YLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRN 319 YL+ + ++ ++ + ++W F + RQ PG N++ K + Sbjct: 405 YLQRHGYTVLSGWSQDAEAIDPSMIEWQGVSAERFPYRLRQAPGANNSLGRYKFNMPNSE 464 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 Y+HDTP LF +R +SGCVRV +L LL+D W+ I + TT Sbjct: 465 AIYLHDTPNHNLFQRDIRALSSGCVRVNKASELASMLLQDA-GWNNSRISSTLDQGNTTF 523 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-VHVGIIPLPE 424 V + +PV+ Y++AW +D QFR DIY D+ G LP+ Sbjct: 524 VSMKHRIPVNLYYLTAWVAEDGRPQFRTDIYNYDDTARAGTKVLPK 569 >gi|152993980|ref|YP_001359701.1| hypothetical protein SUN_2408 [Sulfurovum sp. NBC37-1] gi|151425841|dbj|BAF73344.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 558 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 117/357 (32%), Positives = 185/357 (51%), Gaps = 10/357 (2%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDP--SKGLS 131 K + Y I GGWP + I+ L G+ + +V LRERL+I+GD P S Sbjct: 202 YRALRKYLDKYIAIKENGGWPTVNIKGVLRPGHRNPAVPDLRERLLITGDYIPCDESDES 261 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 +D ++ AV FQ R+GL G++ +TL+A+N VD RI +++NL RIK L ++ Sbjct: 262 DLYDNCLKKAVIRFQKRNGLSAKGVIGKNTLKALNQTVDERITIIKINLDRIK-WLHERP 320 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 R++++NIP L NGK+ + VIVG+ TPI +R+ ++ NPYW +P+SII Sbjct: 321 DNRHIIINIPDYRLYYEVNGKLKMTMKVIVGKRKNPTPIFSNRVKSVVLNPYWNVPKSII 380 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEPPN---FIFRQDPGKI 305 QK+M+ L ++P + I + GK +V V+W + F Q PG Sbjct: 381 QKEMIPKLLRNPHAMAGQGIDIYTGWGKDAKKVSGGSVNWAQYRYSKTVPYRFAQRPGNR 440 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 NA+ K F ++ + YMHDTP LF R + GC+R+ + + P+ Sbjct: 441 NALGRIKFLFPNQFHVYMHDTPTKYLFKRDKRSYSHGCIRLEKPKLMMETIASFNPSLEL 500 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +++K++K T L +P+ VY++AW D +QFRDD+Y D + + + Sbjct: 501 DKAYKILKSKKNTYFSLENTIPIDVVYLTAWVDYDGKLQFRDDVYKYDELMIASVRR 557 >gi|163854165|ref|YP_001642208.1| peptidoglycan binding domain-containing protein [Methylobacterium extorquens PA1] gi|163665770|gb|ABY33137.1| Peptidoglycan-binding domain 1 protein [Methylobacterium extorquens PA1] Length = 590 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 136/358 (37%), Positives = 195/358 (54%), Gaps = 9/358 (2%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISG 122 + +P + +T T +A YQ GGW LP G+S ++ LR L ++G Sbjct: 128 EDPLPSYTAQTFVDTMRAAERYQVYAEAGGWKPLPADFAPKPGDSHAAIPSLRHHLTLTG 187 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DL S FD + +AVK FQ RHGL +G+ TL A+NVP D+R RQL+ + R Sbjct: 188 DLPADAPPSDRFDPPLVAAVKSFQARHGLPDAGIFGRLTLNALNVPADVRQRQLRASAQR 247 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + G RYV VNIP+A++EAVENG V R +VG D+QTP + +RI + NP Sbjct: 248 LMG-SSFGFGERYVTVNIPSATVEAVENGAVTRRYVAVVGSPDKQTPAVETRITDVNLNP 306 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P S+I+ +++ +R++P YL N I ++ G EV +DWN+ + N+ RQD Sbjct: 307 TWTVPVSVIKNEIIPTMRKNPGYLAKNRIRILGPGGVEVDPNAIDWNTQKATNYTLRQDS 366 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ +I+ +R+ YMHDTP LF VRF + GCVRV + + WLL+ T Sbjct: 367 GLDNSLGQVRIDMPNRHAIYMHDTPSKSLFAGSVRFHSHGCVRVGQVKEFAAWLLQGTEG 426 Query: 363 -------WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W IE + + VKL PV FVY++ ++ D + FRDDIYGLD Sbjct: 427 PNGPGSAWGPIEIETAIAVGERRDVKLVKPTPVAFVYMTGYATSDGRVHFRDDIYGLD 484 >gi|218533110|ref|YP_002423926.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|218525413|gb|ACK85998.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] Length = 586 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 136/358 (37%), Positives = 195/358 (54%), Gaps = 9/358 (2%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISG 122 + +P + +T T +A YQ GGW LP G+S ++ LR L ++G Sbjct: 124 EDPLPSYTAQTFVDTMRAAERYQVYAEAGGWKTLPADFAPKPGDSHAAIPSLRHHLTLTG 183 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DL S FD + +AVK FQ RHGL +G+ TL A+NVP D+R RQL+ + R Sbjct: 184 DLPADAPPSDRFDPPLVAAVKSFQARHGLPDAGIFGRLTLNALNVPADVRQRQLRASAQR 243 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + G RYV VNIP+A++EAVENG V R +VG D+QTP + +RI + NP Sbjct: 244 LMG-SSFCFGERYVTVNIPSATVEAVENGAVTRRYVAVVGSPDKQTPAVETRITDVNLNP 302 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P S+I+ +++ +R++P YL N I ++ G EV +DWN+ + N+ RQD Sbjct: 303 TWTVPVSVIKNEIIPTMRKNPGYLAKNRIRILGPGGVEVDPNAIDWNTQKATNYTLRQDS 362 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ +I+ +R+ YMHDTP LF VRF + GCVRV + + WLL+ T Sbjct: 363 GLDNSLGQVRIDMPNRHAIYMHDTPSKSLFAGSVRFHSHGCVRVGQVKEFAAWLLQGTEG 422 Query: 363 -------WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W IE + + VKL PV FVY++ ++ D + FRDDIYGLD Sbjct: 423 PNGPGSAWGPIEIETAIAVGERRDVKLVKPTPVAFVYMTGYATSDGRVHFRDDIYGLD 480 >gi|163731883|ref|ZP_02139330.1| peptidoglycan binding domain protein, putative [Roseobacter litoralis Och 149] gi|161395337|gb|EDQ19659.1| peptidoglycan binding domain protein, putative [Roseobacter litoralis Och 149] Length = 537 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 103/377 (27%), Positives = 182/377 (48%), Gaps = 11/377 (2%) Query: 52 FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVS 110 NF G +P + E A ++ + + ++++GGW P + + L G+S S Sbjct: 158 LTNFAKSSPKGFFKALPPQTGEYNALRKQKLVL-EGLIAKGGWGPTVKAKKLEPGDSGAS 216 Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V LR+RL+ G L + + +D+ + AV FQ HGL G+V TL +N V+ Sbjct: 217 VVALRDRLVRMGYLKRTA--TGTYDSTMTDAVMRFQADHGLAQDGVVGQGTLAEINTSVE 274 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQT 228 R++ + V + R + + + G R++ VN+ + + ++NGKV + ++G D RQ+ Sbjct: 275 KRLQSVIVAMERER-WVNKDRGKRHIEVNLTDFTAKIIDNGKVTFTTRSVIGARDAKRQS 333 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P + ++ NP W +PRSI + + L+Q+P + N++ + D G+++ VD+ Sbjct: 334 PEFSDVMEFMVINPSWFVPRSIAIGEYLPELQQNPNAV--NHLIITDRSGRQIDRTNVDF 391 Query: 289 NSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 F + RQ P + NA+ K F ++ N Y+HDTP LF R + GC+R+ Sbjct: 392 TKYTARTFPYAMRQPPSRSNALGLVKFMFPNKYNIYLHDTPAKNLFGRETRAYSHGCIRL 451 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 + + LL ++ + + T + L VPVH +Y +A + IQ+R Sbjct: 452 ADPFEFAYALLAKQSNDPEGLFKKTLASGTETQLNLKKPVPVHIIYRTALANSKGQIQYR 511 Query: 407 DDIYGLDNVHVGIIPLP 423 D+YG D + Sbjct: 512 RDVYGRDGRIWNALSQA 528 >gi|152991962|ref|YP_001357683.1| hypothetical protein SUN_0366 [Sulfurovum sp. NBC37-1] gi|151423823|dbj|BAF71326.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 712 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 115/370 (31%), Positives = 192/370 (51%), Gaps = 10/370 (2%) Query: 57 ARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLR 115 ++ P+ + + +A+ Y++I GGW +LP + L G SS V LR Sbjct: 338 KSLEYAFKKAKPVFNH--YDRMLQALKRYKEIAENGGWKKLPEFKNLKPGMSSSVVPALR 395 Query: 116 ERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 ERL I GD S + + AVK FQ RHGL+ +G + T +A+NV + +++ Sbjct: 396 ERLAIEGDYVCDSNETGNRYRGCLVDAVKKFQARHGLEAAGFIGKMTRKALNVSAEEKVK 455 Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L++NL RIK +++ ++ VNIP+ + ++ ++ VI GR +TPI + R Sbjct: 456 KLKLNLDRIK-WIKRDNERYHIYVNIPSFHMYMYDDKEMIRTMRVITGRKGHETPIFYGR 514 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM---IDEKGKEVFVEEVDWNSP 291 + I+ NPYW IP SII+ + + L++DP Y NI + E +V +V+W+ Sbjct: 515 VRTIVLNPYWRIPPSIIRHETIPKLQKDPGYTNKKNIEIHTGYSEHSPKVNPYKVNWHKY 574 Query: 292 --EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 + P + F Q PG+ NA+ K F ++ + YMHDT + LF R + GCVR++ Sbjct: 575 GRKLPPYRFMQSPGEKNALGKVKYLFPNKYSVYMHDTNQRYLFVKDYRALSHGCVRLQKP 634 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 +L + P +E++ K TP +L+ +PV VY++A K+ + F DD+ Sbjct: 635 FELLETFAEIEPKIDYERSKEILDENKKTPYRLSKSIPVDIVYLTALVSKEGTVMFYDDV 694 Query: 410 YGLDNVHVGI 419 YG D + + + Sbjct: 695 YGYDRMQMAM 704 >gi|85860925|ref|YP_463127.1| peptidoglycan binding protein [Syntrophus aciditrophicus SB] gi|85724016|gb|ABC78959.1| peptidoglycan binding protein [Syntrophus aciditrophicus SB] Length = 567 Score = 416 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 129/422 (30%), Positives = 200/422 (47%), Gaps = 21/422 (4%) Query: 13 CFFVYLILPMGLSLVEKPIHASVLDE--IINESYHSIVNDRFDNFLARVDMGIDSDIPII 70 FF+Y L ++ +D + + + + L+ ++ + Sbjct: 147 AFFLY-----AAHLASGKVNPETVDAQWFLRKRPSPNLLRTLEQALSSAEVESILENLAP 201 Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLII------SGD 123 S A KA++ Y+DI R WP + L G+ S V LRERL + D Sbjct: 202 SSPAYANLRKALSKYRDIERRRKWPVMMEGIRLKKGDRSEQVALLRERLDVPEVFPFWED 261 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 + +G FD Y+E AVK FQ HGL G+ S TLEAMNV R+RQ++VNL R+ Sbjct: 262 REDGEGKY-LFDEYLERAVKAFQKSHGLIADGVAGSETLEAMNVTAAERVRQIKVNLERL 320 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + + G R V++NIP L +E K S ++VG+ + TP+ SRI + NPY Sbjct: 321 R-WIPDDPGDRAVIINIPEFRLRVLEKEKEVFNSRIVVGKYAQNTPVFGSRITHFILNPY 379 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPP--NFIF 298 W +PRSI ++++ L++Q P+YL ++ ++ G + V +DW + N+ Sbjct: 380 WHVPRSIAVEEILPLIKQSPEYLNWEDMKVLSGSGAKTRIVPPWTIDWENMTAREFNYHL 439 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 RQDPG N + K F + + Y+HDTP LF R + GC+RV N ++L V LL Sbjct: 440 RQDPGPRNPLGRIKFYFPNPYDVYLHDTPYLHLFEQKKRNFSHGCIRVENPVELAVVLLG 499 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 +R + ++T K +L V + Y + W+ D + FR DIY D Sbjct: 500 GNSIETRKQLLSAIETGKRKQFQLRQPVSIRVFYFTTWAEADGTVHFRKDIYNHDLPLQK 559 Query: 419 II 420 + Sbjct: 560 AL 561 >gi|73537776|ref|YP_298143.1| hypothetical protein Reut_B3942 [Ralstonia eutropha JMP134] gi|72121113|gb|AAZ63299.1| conserved hypothetical protein [Ralstonia eutropha JMP134] Length = 557 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 105/372 (28%), Positives = 169/372 (45%), Gaps = 12/372 (3%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW----PELPIRPLHLGNSSVSVQR 113 R+ I P S A+A Y+ + ++ GW P LP L G + + Sbjct: 151 RLPEAIREAAP--SFPLYGTLRDALAHYRTLAAQPGWDRTLPALPGGKLTSGQAYSGLAE 208 Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 + RL GD+ + V VK FQ RHGL+ G++ + TL +N R+ Sbjct: 209 MARRLQALGDMPADAPAPKRYSGAVVDGVKAFQARHGLEADGVIGAGTLAQLNTTPAARV 268 Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE-NG---KVGLRSTVIVGRV-DRQT 228 RQ+++ + R++ R ++VNIP L A + NG + L VIVG+ D +T Sbjct: 269 RQIELTMERLR-WTPLTDSPRMIVVNIPEFMLRAYDYNGGKLDIKLEMKVIVGKALDTRT 327 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P+ + I F+PYW +P SI + + + LR+DP Y + + + + Sbjct: 328 PLFKEDMRYIEFSPYWNVPPSIARSETIPRLRRDPAYFTQQGFEFVSNGKAVTTLSDANL 387 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 ++ RQ PG +NA+ K F + N Y+H TP P LF R + GC+RV Sbjct: 388 DAVLNGRMRIRQRPGPMNALGDIKFVFPNNQNIYLHHTPTPQLFKRDRRDFSHGCIRVEE 447 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 + L ++L+D P W+ I + + ++ V L +PV Y +A + D + F D Sbjct: 448 PVALAKFVLQDMPGWTEERIRQAMTKGQSNTVALQQPLPVVLAYGTAIARADGRVYFLPD 507 Query: 409 IYGLDNVHVGII 420 IYG D + + Sbjct: 508 IYGQDKLLDQAL 519 >gi|296446244|ref|ZP_06888191.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] gi|296256281|gb|EFH03361.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] Length = 476 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 129/357 (36%), Positives = 196/357 (54%), Gaps = 7/357 (1%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGD 123 D P + ET T A Y I GGWP++ L G+S +V LR+RL + GD Sbjct: 115 DDPTPALQPETFFTTSLASERYAAIADAGGWPKVGA-ALKPGSSGRAVAALRKRLAVEGD 173 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 L + +D + AVK FQ R GL +G+V +TL ++VP ++R RQL + R+ Sbjct: 174 LPSAAAAGEGWDGALTQAVKHFQFRMGLKQTGVVAGATLRELDVPANVRFRQLASSAQRL 233 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 G RY++VNIP+A+++AVENG+V R T IVG VD +P + +R+ + NP Sbjct: 234 AG-NNFPFGPRYIVVNIPSAAVDAVENGRVVRRYTAIVGGVDHPSPEVEARVGAVNLNPT 292 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +P SII+ ++M ++++P YL I ++D G EV + ++W + N+ RQD G Sbjct: 293 WTVPVSIIKNEIMPKMQKNPSYLAKLRIRVLDNHGAEVDPKTINWANERAANYTLRQDSG 352 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT- 362 N++ S +I +++ YMHDTP LF + RF + GCVRV + DL WLL+ Sbjct: 353 AGNSLGSIRIAMPNKHAVYMHDTPSKRLFASDYRFLSHGCVRVEGVYDLAAWLLQGASGS 412 Query: 363 ----WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 W + I + + V L VPV +VY++ W+ D + FR+D+YG+D V Sbjct: 413 PSGQWDKAAILAKIAGGERQDVALPKPVPVVWVYMTGWASADGTVHFRNDVYGVDAV 469 >gi|83311306|ref|YP_421570.1| hypothetical protein amb2207 [Magnetospirillum magneticum AMB-1] gi|82946147|dbj|BAE51011.1| Uncharacterized protein conserved in bacteria [Magnetospirillum magneticum AMB-1] Length = 535 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 128/415 (30%), Positives = 198/415 (47%), Gaps = 11/415 (2%) Query: 16 VYLILPMGLSL-VEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET 74 +L G L + + A + E+ RF LA + + IS + Sbjct: 113 SATLLRFGRDLAIGGVLPARNVGGFGAETRGEFDGARFLKALAEGKPLAEQ-MEAISPQY 171 Query: 75 --IAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + + + I + GGWP +P L G + V LR RLI SGDL Sbjct: 172 VGYIRLRDGLERARAIAAAGGWPTIPDGAKLVPGETDERVPLLRRRLIASGDLADGLAEG 231 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 +DA + AVK FQ RHGLDP V TL +NVP D R+RQ+ NL R + + + Sbjct: 232 KIYDATLAEAVKRFQARHGLDPDATVGGKTLAHLNVPADARVRQITANLERWR-WMPRSF 290 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G +V VNI A +E VE+G V + V+VG TP +++ ++ ++ NP W +P SI Sbjct: 291 GRHHVAVNIAAQQMEVVEDGSVAMVMRVVVGDTKHPTPSMNTTMSSVVLNPAWRVPTSIA 350 Query: 252 QKDMMALLRQDPQYLKDNNIHMID--EKGKEVFVEEVDWNSP-EPPNFIFRQDPGKINAM 308 K+++ LR+DP YL + + ++D E E + VDWN+ + + RQ PG NA+ Sbjct: 351 NKEILPKLRKDPNYLTSSKLQIVDYPEGSPESAGDGVDWNAIGKKFPYRLRQPPGPDNAL 410 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K ++ YMHDTP F+ R + GCVR+ ++L +L W Sbjct: 411 GQLKFNLTDSDDIYMHDTPNRRAFSRSYRALSHGCVRLERPVELGELMLG--ARWQGKLA 468 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 ++ R T + L +PV+ +Y +AW+ ++ + FRDD+YG D + + Sbjct: 469 HDINANRSTRTLMLERTIPVYLMYWTAWADENGNLHFRDDLYGHDRRLMTALERA 523 >gi|220924541|ref|YP_002499843.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219949148|gb|ACL59540.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 540 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 136/359 (37%), Positives = 201/359 (55%), Gaps = 9/359 (2%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISG 122 P ++ T T + YQ I+ GGWP +P L G+ + +V LR RL ++ Sbjct: 119 QDPTPTLAPSTFLDTLRMADRYQAIVQAGGWPGVPANLSLKPGDRNPAVALLRRRLAVTE 178 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DL S D + +A+K FQ RHGL +G++ T++A+NVP R RQL + R Sbjct: 179 DLAADAPASDVMDEALVAALKRFQQRHGLPDTGLLGPMTVKALNVPASTRQRQLAASASR 238 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + G RYV+ NIP+A++EAVE G V R +VG+ DR +P++ +RI + FNP Sbjct: 239 LMG-SRFPFGERYVVANIPSATVEAVERGTVARRYVAVVGKPDRASPLVETRITNVNFNP 297 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P S+I+KD++ +R+DP YL +I M+D +G EV +DW++ + N+ RQDP Sbjct: 298 TWTVPVSLIKKDIIPHMRKDPGYLAKMHIRMLDGQGNEVQPTAIDWSTEKAVNYTLRQDP 357 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ +I+ +R+ YMHDTP LF+ RF +SGCVRV + L WLL+ TP Sbjct: 358 GFDNSLGQVRIDMPNRHAVYMHDTPSKNLFSRTARFHSSGCVRVAEVKGLVGWLLEGTPG 417 Query: 363 WSRY-------HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 IE + T + +KLA VPV FVY++ ++ D FRDD+Y LD Sbjct: 418 PGGPGTVWGPMEIETGIATGERRDIKLAKPVPVTFVYLTGYATPDGRAHFRDDVYSLDG 476 >gi|188591281|ref|YP_001795881.1| hypothetical protein RALTA_A0493 [Cupriavidus taiwanensis LMG 19424] gi|170938175|emb|CAP63161.1| conserved hypothetical protein, COG2989; putative exported protein [Cupriavidus taiwanensis LMG 19424] Length = 529 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 119/415 (28%), Positives = 189/415 (45%), Gaps = 26/415 (6%) Query: 38 EIINESYHSIVNDRFDNFLA--------RVDMGIDSDIPIISKETIAQTEKAIAFYQDIL 89 ++ ++ FD R+ I P +A+A Y+DI Sbjct: 113 RAVHANFAPPAERPFDAATWLRDAVAQHRLPDAIRQAAPTF--PLYGTLRQALARYRDIA 170 Query: 90 SRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + W P LP L G L RL+ GDL ++ + VK F Sbjct: 171 RQPVWQQPLPPLPASKLTPGQPWAGAAALTARLVALGDLPAGTQPPARYEGALVDGVKAF 230 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 Q RHGL G++ ++TL +N+P+ R+RQ+++ + R++ G R ++VN+P L Sbjct: 231 QSRHGLQADGVIGAATLAQLNLPIADRVRQIELTMERLRWTP--LDGPRMIVVNVPEFML 288 Query: 206 EAVE--NGK--VGLRSTVIVGRV-DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 A E +GK + L VIVG+ D +TP+ + I F+PYW IP SI +++ + LR Sbjct: 289 RAYEIRDGKLDIKLEMKVIVGKALDTRTPLFEEDMRYIEFSPYWNIPPSIARRETVPRLR 348 Query: 261 QDPQYLKDNNIHMIDEKGKEVF-VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 +DP Y + + GK V + E + ++ + RQ PG +NA+ K F + Sbjct: 349 RDPGYFSRQGLEFVGGDGKAVTTLSEENLDAVLNGSLRIRQRPGPLNALGDIKFVFPNNE 408 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 N Y+H TP P LF R + GC+RV + L ++L D P W+ I E + K+ Sbjct: 409 NIYLHHTPSPQLFKRDRRDFSHGCIRVEAPVALAQFVLHDMPDWNEARIREAMARGKSNT 468 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP----LPEDHPIDS 430 V+L +PV Y + + D + F+ DIYG D + + P+ I S Sbjct: 469 VRLQQPLPVVLAYGTVIARADGRVSFQPDIYGHDKLLDKALRQRTGRPQPRAIAS 523 >gi|218781317|ref|YP_002432635.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfatibacillum alkenivorans AK-01] gi|218762701|gb|ACL05167.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfatibacillum alkenivorans AK-01] Length = 563 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 120/413 (29%), Positives = 198/413 (47%), Gaps = 15/413 (3%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARV--DMGIDSDIPIISKE--TI 75 L G L+ ++ ++ + LA ++ + ++ + Sbjct: 150 LIYGAHLLGGKVNPETIEP---DWTAGKREADLPALLAEALKTNDVEKALKSLAPQDVAY 206 Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDL-DPSKGLSVA 133 + + + + + P LG LR RL +G L S+ Sbjct: 207 RSMQDLLKQLRAAAPQPSVRLVQTAPSFKLGYRGPQTAALRARLAAAGFLGQDSEQDKEV 266 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 F+ +E+A+K FQ GL+ G+ +TL A+N I ++ NL R + + Q +G Sbjct: 267 FNESLEAALKKFQASWGLEADGVCGPATLHAVNRSEKDNIAAIRANLERWR-WMPQNLGD 325 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R++LVNI L VENG+ L IVG++ R+TP+ R+ ++ +PYW +P SI +K Sbjct: 326 RHILVNIADFHLAVVENGEELLAMKAIVGKLYRKTPVFSGRLTYLVISPYWDVPPSIARK 385 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPNFIFR--QDPGKINAM 308 D + L+++DP Y N+ + G +E+ VDW + P NF +R Q PG NA+ Sbjct: 386 DKLPLMQKDPNYFTANHFLVYQGWGADSREIDPASVDWKALGPNNFPYRLRQKPGPGNAL 445 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K F +++N Y+HDTP LF R +SGC+R+++ I L +LLKD P W+R I Sbjct: 446 GRIKFMFPNKHNVYIHDTPSHDLFAKSQRNFSSGCIRIQDPIGLAEYLLKDAPGWNREAI 505 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 E+ V + V L+ +PVH +Y +A+ + FR+DIYG D + + Sbjct: 506 EDAVDNKIEKTVSLSRPIPVHIMYFTAFGDTRGAVHFRNDIYGRDARLLEALD 558 >gi|56696802|ref|YP_167164.1| peptidoglycan binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56678539|gb|AAV95205.1| peptidoglycan binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 537 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 112/407 (27%), Positives = 188/407 (46%), Gaps = 10/407 (2%) Query: 22 MGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 L + S +D+ + + + + L + G + + K Sbjct: 127 FARDLQTGLLTPSQIDDGMVRVVERRGAEAYLSELQAAEPGRYMRMLAPNTSQYRALLKL 186 Query: 82 IAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 + L+ GGW P + L G+ V LR RLI G +D S S +D ++ Sbjct: 187 KLDLEQALATGGWGPTVAGGKLAPGDGGPRVVALRNRLIAMGFMDRSAVAS--YDGTLQK 244 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 AV+ FQ+ HGL+ G+ TL+ +N V R++ + V L R + L + G R++LVN Sbjct: 245 AVQAFQLAHGLEADGVAGDGTLDEINKSVADRLKSVIVALERER-WLPRDRGERHILVNQ 303 Query: 201 PAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 + + V++G+V + ++G+ DR++P + ++ NP W +PRSII K+ + Sbjct: 304 TDFTAKIVDHGRVTFETRSVIGKNVSDRRSPEFSDEMEHMVINPSWYVPRSIITKEYLPK 363 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFY 316 LR +P + ++ + D +G++V VD++ +F F RQ PGK NA+ K F Sbjct: 364 LRANPNAV--RHLEITDSRGRQVNRGAVDFSQFSSRSFPFAMRQPPGKSNALGLVKFMFP 421 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 ++ N Y+HDTP+ LF VR + GC+R+ + LL + V+ T + Sbjct: 422 NKYNIYLHDTPQKDLFAREVRAYSHGCIRLAQPFEFAYALLALQEADPKSFFHNVLNTGR 481 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 T V L VPVH +Y +A +R D+YG D + Sbjct: 482 ETKVDLERHVPVHIIYRTAVVDDRGQAGYRRDVYGRDAKIWEALSRA 528 >gi|284007574|emb|CBA73124.1| conserved hypothetical protein [Arsenophonus nasoniae] Length = 563 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 112/390 (28%), Positives = 195/390 (50%), Gaps = 22/390 (5%) Query: 40 INESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-P 98 +++ +I + + +++ + S +P+ + K +A+ + + WP++ Sbjct: 177 VSQWQTAINSKQLASWIKTLAPQHASYLPMRT--------KMLAY---LADQQIWPKINT 225 Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGM 156 + L G +S + L E L +G L + + AVK FQ +GL+P G+ Sbjct: 226 VSLLKPGQTSNDLVSLSEILTRNGLLTQDADTDNTRHYGGLLVDAVKQFQRMYGLEPDGI 285 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 + ++TL+ +N R L +N+ R++ + + G +LVNIPA +L N ++ + Sbjct: 286 IGNATLKWLNTSPTDRAGLLAINIQRLRIIPNE--GGSGILVNIPAYTLHFYLNNQLIID 343 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 S VIVGR DR+TPI+ S +N ++ NP W +P S+++KD++ R+DP Y ++ Sbjct: 344 SKVIVGRPDRKTPIMSSELNSVVINPPWNVPTSMVRKDILPQARRDPGYFARRGFTVLSG 403 Query: 277 KGK---EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 + + ++WN+ +F + RQ PG NA+ K S + Y+HDTP L Sbjct: 404 WERNAYPIDPYSINWNAISSSSFPYRVRQAPGPSNALGRYKFNMPSSDAIYLHDTPNHSL 463 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 FN R +SGCVRV L LL +W + I+ ++ +T + + +P++ Sbjct: 464 FNRQNRSISSGCVRVNKASVLASILLARA-SWDQKRIDGALQLGETRYINIPGRIPIYLY 522 Query: 392 YISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 Y +AW +I FRDDIYG DNV G + Sbjct: 523 YQTAWVDNKNIANFRDDIYGYDNVIYGAMN 552 >gi|114047885|ref|YP_738435.1| peptidoglycan binding domain-containing protein [Shewanella sp. MR-7] gi|113889327|gb|ABI43378.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. MR-7] Length = 560 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 115/434 (26%), Positives = 213/434 (49%), Gaps = 28/434 (6%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDI---------P 68 I+ + L+ ++ S+L + N + FD L +++ I + P Sbjct: 127 GIITYAIHLLNGKVNPSMLGKTWNYDETHLD---FDTTLKQLEEHIKAHTVADAIAGLAP 183 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPS 127 I+ Q ++ +A Y+D+ +R + +P + G++S SVQ + RL G L S Sbjct: 184 KIAP--YQQLKQYLAQYKDLAARYPFSPIPYTEVIKPGSTSPSVQGIATRLTELGYLAAS 241 Query: 128 KGLSV--------AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 +D+ +E+AV+ FQ H L G++ + T+ A+NVP R+ Q+++N Sbjct: 242 APADNSAAVSQPLTYDSTLEAAVRQFQTDHSLKADGVIGAGTMAALNVPYSQRVEQIRIN 301 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 L R + L + Y++VN+ L ++ + R+ +I+G+++ +TP+ S++ ++ Sbjct: 302 LERAR-WLSANLRANYLIVNLAGYELLLFKDNSLSWRTDIIIGKINAKTPLFKSKLKYVV 360 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI-- 297 NP W +PRSI +++ LR+DP YL+ + +++ G V +DW+S NF Sbjct: 361 VNPTWTVPRSIST-EIINHLRKDPDYLQKKHFKVVEGSGTPVDASGIDWHSMTRKNFPYW 419 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 F Q+PG+ N++ K F ++ + Y+HDTP LF R + GC+RV++ + L LL Sbjct: 420 FVQEPGEDNSLGVVKFIFPNQYSIYLHDTPAKSLFEQTDRAFSHGCIRVKDPLVLADKLL 479 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 WS + + KT + L + + +Y + KD I+F +D+Y D V + Sbjct: 480 SANANWSSNTLSSKLSEGKTENLFLDEPLDILIMYWTVTL-KDGKIKFYNDVYKRDPVLI 538 Query: 418 GIIPLPEDHPIDSD 431 + P + +D Sbjct: 539 EALNRPTYEGVLAD 552 >gi|290473860|ref|YP_003466734.1| putative carboxypeptidasewith PGDB-like domain [Xenorhabdus bovienii SS-2004] gi|289173167|emb|CBJ79940.1| putative carboxypeptidasewith PGDB-like domain [Xenorhabdus bovienii SS-2004] Length = 572 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 120/431 (27%), Positives = 189/431 (43%), Gaps = 47/431 (10%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y I L++K + Sbjct: 151 MLGYLHFVNDVKKKGDSWLYSKKSYKINLPPPDLIDK--WQQHI---------------- 192 Query: 53 DNFLARVDMGIDSDIPIISK--ETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSV 109 D + S I +S K + + + W + ++ L G +S Sbjct: 193 ------TDNNVFSYITALSPNNPMYKNMRK--EMLKQLADKQQWSDFSMKGTLRPGQNSE 244 Query: 110 SVQRLRERLIISGDLDP--SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 SV LRE LI S LD K + ++ + +AVK FQ HGL G++ ST +N Sbjct: 245 SVVALREILIRSDTLDSLTVKPENKVYNKELVAAVKRFQALHGLSADGVIGQSTKVWLNT 304 Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 R R + +N+ R++ + + +LVNIP SL +GK L S V+VGR R+ Sbjct: 305 TPQTRARIMALNIQRLRIIPDNI--PTGILVNIPNYSLFYYLDGKEVLNSKVVVGRPSRK 362 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVE 284 TPI+ S +N ++ NP W +P S+ +KD+ +DP Y + + + + Sbjct: 363 TPIMSSNLNNVVINPPWTVPTSMTRKDIAPRAMRDPSYFRSRGYTVFSSWSNDAKVIDPS 422 Query: 285 EVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 ++W+ P NF + RQ PG N++ K + Y+HDTP F +R +SG Sbjct: 423 SINWDVTTPNNFPYRIRQAPGPTNSLGRFKFNMPNSEAIYLHDTPNQASFGREMRAVSSG 482 Query: 343 CVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 CVRV +L LL + W++ + +KT T V + ++PV Y +AW + + Sbjct: 483 CVRVNKAPELANMLLGNA-GWNKDRVSNSLKTWTTAYVNIPKKIPVFLYYQTAWVDEGGV 541 Query: 403 IQFRDDIYGLD 413 Q+R DIY D Sbjct: 542 PQYRADIYDYD 552 >gi|304393082|ref|ZP_07375011.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] gi|303294847|gb|EFL89218.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] Length = 492 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 127/362 (35%), Positives = 178/362 (49%), Gaps = 9/362 (2%) Query: 75 IAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 I FY I GGWP++P L +G V LR+RL I+GD S Sbjct: 50 YRGLATGITFYTQIAQSGGWPQVPEGGTLSVGVDDPRVPILRQRLYITGDYLGEDTQSTM 109 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 FDA ++ AV FQ R+G +P G V +TL +MNVPV+ R+ QL++N R + +G Sbjct: 110 FDAALKEAVVAFQNRNGQEPDGAVGPATLASMNVPVEKRLEQLRIN-QRRWDNMPASLGD 168 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R+VLVN+ LE +E K L V+VG+ TP I I NPYW +P SI K Sbjct: 169 RFVLVNMAGFELEVIEGEKTVLDMKVVVGKDYHSTPEFSDLIKTIEINPYWNVPASIANK 228 Query: 254 DMMALLRQDPQYLKD---NNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQDPGKINAM 308 ++ + L +++ + V V ++ W + N F RQ PG NA+ Sbjct: 229 ELKLDYMKGAATLAKADSQGYEVVNGD-QVVPVSQIAWTKYKDDNLPFRIRQRPGPSNAL 287 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K F +++N Y+HDT LF+ VR + GCVR+ +L +LL W R I Sbjct: 288 GDMKFLFPNKHNVYLHDTQAKSLFSKTVRAFSHGCVRLHRPRELAEYLLA-ANGWDRAKI 346 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPI 428 +EVV + + T VKL PVH Y++AW + IQFR DIYG D + P Sbjct: 347 DEVVASGERTRVKLEQPTPVHLAYMTAWLGRQGFIQFRPDIYGRDAEDAQQLAPPPSDDF 406 Query: 429 DS 430 +S Sbjct: 407 NS 408 >gi|85857899|ref|YP_460101.1| cell wall degradation protein [Syntrophus aciditrophicus SB] gi|85720990|gb|ABC75933.1| cell wall degradation protein [Syntrophus aciditrophicus SB] Length = 625 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 128/354 (36%), Positives = 196/354 (55%), Gaps = 10/354 (2%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLD-PSKGLSV 132 + + + Y DI GGW ++P RPL G V+ LR+RLI +G Sbjct: 258 YMKLRERLNEYIDIAEAGGWRKIPAGRPLMKGMRDKRVRTLRKRLISTGMASLSQAKTDT 317 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 FD +E+AV+ FQ +HGL G+V +TL +NVPV++RI Q+ VNL R++ L ++G Sbjct: 318 YFDLDLETAVRRFQRQHGLREDGIVGRTTLVELNVPVEVRICQMAVNLDRLR-WLPYELG 376 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 R++L+NIP +LE VE+ +V + IVG+ D++T +L SRI I NPYW IP+SI Sbjct: 377 DRHILINIPDFNLEIVEDKRVVMHIRAIVGKTDKRTNLLSSRITAIELNPYWKIPKSIAV 436 Query: 253 KDMMALLRQDPQYLKDNNIHMI--DEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAM 308 ++ + L+++P+YL I + D + V + W+ NF + RQ+PG N + Sbjct: 437 EEFLPQLKRNPRYLGKK-IKVFAGDYQTNPVSPTSIKWSRVTAENFPYFLRQEPGSDNPL 495 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP--TWSRY 366 K F + + Y+HDTP LF R + GCVR+ +DL +LLK P WS Sbjct: 496 GRVKFVFSNEADIYIHDTPTRNLFTQDKRSFSHGCVRIEKPVDLAAYLLKIQPNNRWSSQ 555 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 +I+ ++ K P+ L VPVH VY + W ++ + FR DIY +DN+ ++ Sbjct: 556 NIQAEIRKGKNLPLPLNERVPVHIVYQTVWIDREGNLNFRPDIYDIDNIPANLL 609 >gi|114767686|ref|ZP_01446383.1| peptidoglycan binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114540304|gb|EAU43401.1| peptidoglycan binding protein, putative [Roseovarius sp. HTCC2601] Length = 525 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 115/402 (28%), Positives = 184/402 (45%), Gaps = 13/402 (3%) Query: 20 LPMGLSLVEKPIHASVLDEIIN-ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 L L + +D I E D + + D+ + E Sbjct: 112 LQFARDLSGGALDGRRIDSGIKREPARRGSEDLLEALATGEPRAVFRDLAPKTPEYTRLM 171 Query: 79 EKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 + ++ + I RGGW + + L G+S V LR+RLI G L P+ LS +D Sbjct: 172 REKLSLERVIA-RGGWGAPVTVGKLDPGDSGPGVVILRDRLIEMGYLKPT--LSARYDDA 228 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LEQKMGLRYV 196 + AV FQ HGL+ G+ SSTL A+NVP R++ + V + R + + +G R+V Sbjct: 229 LRDAVLAFQGDHGLEADGVAGSSTLSAVNVPATERLKSVIVAMERERWINFADGLGERHV 288 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 LVNI +++GKV + +VG DR+TP + ++ NP W +PRSI+ + Sbjct: 289 LVNIVDFHARIIDDGKVTFETRSVVGHQDPDRRTPEFSDVMEFMVINPSWYVPRSIVVNE 348 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTK 312 + LLR++P + ++ + D +G+ V + +F F RQ PG NA+ K Sbjct: 349 YLPLLRRNPGAVS--HLVITDSRGRRVNRGN-GFAQYSAASFPFAMRQPPGPKNALGQVK 405 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F ++ N Y+HDTP LF R + GC+R+ + D LL + Sbjct: 406 FMFPNKYNIYLHDTPSKHLFARGQRTFSHGCIRLGDPKDFAYALLALQTDDPEGFFASRL 465 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + V L VPVH +Y +A++ + +R D+YG D Sbjct: 466 RGGSESRVNLEQPVPVHLIYRTAFTQAKGRVNYRADVYGRDA 507 >gi|113970655|ref|YP_734448.1| peptidoglycan binding domain-containing protein [Shewanella sp. MR-4] gi|113885339|gb|ABI39391.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. MR-4] Length = 560 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 116/443 (26%), Positives = 215/443 (48%), Gaps = 28/443 (6%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDI- 67 I I+ + L+ ++ S+L + N + FD L +++ I + Sbjct: 118 NIFEVLLSDGIITYAIHLLNGKVNPSMLGKTWNYDETHLD---FDTTLKQLEEHIKAHTV 174 Query: 68 --------PIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERL 118 P I+ Q ++ +A Y+D+++R + +P + G++S SVQ + RL Sbjct: 175 ADAIAGLAPKIAP--YQQLKQYLAQYKDLVTRYPFSPIPYTEVIKPGSTSPSVQGIATRL 232 Query: 119 IISGDLDPSKGLSV--------AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 G L S +D+ +E+AV+ FQ H L G++ + T+ A+NVP Sbjct: 233 TELGYLAASAPADNSAAVNQPLTYDSTLEAAVRQFQTDHSLKADGVIGAGTMAALNVPYS 292 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 R+ Q+++NL R + L + Y++VN+ L ++ + R+ +I+G+++ +TP+ Sbjct: 293 QRVEQIRINLERAR-WLSANLPANYLIVNLAGYELLLFKDNSLSWRTDIIIGKINAKTPL 351 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 S++ ++ NP W +PRSI +++ LR+DP YL+ + +++ G V +DW+S Sbjct: 352 FKSKLKYVVVNPTWTVPRSIST-EIINHLRKDPDYLQKKHFKVVEGSGTPVDASGIDWHS 410 Query: 291 PEPPNFI--FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 NF F Q+PG+ N++ K F ++ + Y+HDTP LF R + GC+RV++ Sbjct: 411 MTRKNFPYWFVQEPGEDNSLGVVKFIFPNQYSIYLHDTPAKSLFEQTDRAFSHGCIRVKD 470 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 + L LL WS + + KT + L + + +Y + KD I+F +D Sbjct: 471 PLVLADKLLSANANWSSNTLSSKLSEGKTENLFLDEPLDILIMYWTVTL-KDGKIKFYND 529 Query: 409 IYGLDNVHVGIIPLPEDHPIDSD 431 +Y D V + + P + +D Sbjct: 530 VYKRDPVLIEALNRPTYEGVLAD 552 >gi|149203870|ref|ZP_01880839.1| peptidoglycan binding protein, putative [Roseovarius sp. TM1035] gi|149142987|gb|EDM31029.1| peptidoglycan binding protein, putative [Roseovarius sp. TM1035] Length = 522 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 106/395 (26%), Positives = 193/395 (48%), Gaps = 11/395 (2%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 + + V+ +I E + LA+ + ++ S E ++ + + +++ Sbjct: 122 VPSKVIGDIKREVVRQESGALLNEILAKEPSRVMRNLAPRSNEYARLLKQKL-RLEQLVA 180 Query: 91 RGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 GGW + L G+S +V LR RLI G LD S +D ++ AV+ FQ H Sbjct: 181 EGGWGAAVSAEKLRPGDSGPAVIALRNRLIAMGYLDRSAA--QTYDMRLQQAVQAFQGDH 238 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL+ G+ S+TL A+N P R++ + V + R + L ++ G R++LVN+ S ++ Sbjct: 239 GLETDGIAGSTTLAAVNTPATERLKSVIVAMERER-WLSEERGQRHILVNLTDFSARILD 297 Query: 210 NGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 N V + ++G+ D R++P + ++ NP W +P SI + + ++++P Sbjct: 298 NDSVTFATRAVIGKNDQNRRSPEFSDEMEYMVINPTWHVPYSIAVNEYLPQMQRNPG--A 355 Query: 268 DNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHD 325 +++ + + G+EV V++ + NF F +Q P + NA+ K F ++ N Y+HD Sbjct: 356 ASHLKLYNRNGREVSRGAVNFGAYNARNFPFAIKQPPSERNALGLVKFMFPNKYNIYLHD 415 Query: 326 TPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATE 385 TP+ LF+ R + GC+R+ D LL + + V+ T + T V+L Sbjct: 416 TPQKALFDLEKRDFSHGCIRLHQPFDFAYALLGRQESDPKAFFHSVLGTGRETYVQLEQH 475 Query: 386 VPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 VPVH +Y +A++ Q+R D+YG D + Sbjct: 476 VPVHIIYRTAFTQAQGRPQYRGDVYGRDARIWEAL 510 >gi|83953680|ref|ZP_00962401.1| peptidoglycan binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83841625|gb|EAP80794.1| peptidoglycan binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 528 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 116/372 (31%), Positives = 193/372 (51%), Gaps = 11/372 (2%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQ 112 +F++ ++ + E A + + + +L++GGW P +P L G V Sbjct: 151 DFISSDPTPFLRNLRPRTMEYNALMREKL-RMEHLLTQGGWGPAVPASSLKPGAQGTQVV 209 Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 LR RL+ G L S ++ +DA ++ AV+ FQ HGL+ G+ S T+ +N V+ R Sbjct: 210 ALRNRLMSMGYLKRSNVMT--YDATLQEAVRSFQKDHGLNEDGVAGSGTMAEINKSVETR 267 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG--RVDRQTPI 230 ++ + V + R + L ++ G R+VLVNIPA + V+NG+V + +VG + DR TP Sbjct: 268 LQSVIVAMERER-WLNKERGARHVLVNIPAFTASVVDNGQVTFETRSVVGANQSDRLTPE 326 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 + I+ NP W +PRSI+ K+ + ++++P +I +ID +G+ + V+++ Sbjct: 327 FSDVMEYIVINPTWTVPRSIVTKEYLPSMQRNPN--AAGHIDLIDNRGRIISRGSVNFSR 384 Query: 291 PEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 F + RQ PG+ NA+ K F ++ N Y+HDTP LF+ VR + GCVR+ + Sbjct: 385 YTARTFPYGMRQKPGQTNALGLVKFIFPNKYNIYLHDTPSKSLFDRDVRAFSHGCVRLAD 444 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 D LL + + + T + T V L TEVPVH +Y +A++ Q+R D Sbjct: 445 PFDFAYTLLAPQAADPVAYFKRQLATGRETFVHLDTEVPVHIIYRTAFTTPRGHTQYRAD 504 Query: 409 IYGLDNVHVGII 420 IYG D + Sbjct: 505 IYGRDGRIWDAL 516 >gi|213027433|ref|ZP_03341880.1| hypothetical protein Salmonelentericaenterica_35663 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 410 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 114/416 (27%), Positives = 178/416 (42%), Gaps = 60/416 (14%) Query: 44 YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPL 102 +++ + F+A + A A+ + WP+L L Sbjct: 2 KYALEEGQLPMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLTNTATL 50 Query: 103 HLGNSSVSVQRLRERLIISGDLD------------------------------------- 125 G S V LRE L +G LD Sbjct: 51 RPGQWSNDVPALREILQRTGMLDGGPKIALPGDNTSDSAVVSPSAVVDETSVAQPVDEPT 110 Query: 126 ----PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 + A+D + AVK FQ GL G++ +T +N+ R L +N+ Sbjct: 111 ARRSKPAPAARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQ 170 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R++ L + ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ N Sbjct: 171 RLRLLPAEL--STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVN 228 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR 299 P W +P ++ +KD++ + DP YL+ + ++ + + +VDW + P N FR Sbjct: 229 PPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFR 288 Query: 300 --QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 Q PG N++ K S + Y+HDTP LF R +SGCVRV +L LL Sbjct: 289 FQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRVNKASELANMLL 348 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +D W+ I +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 349 QDA-GWNDARISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 403 >gi|83942461|ref|ZP_00954922.1| peptidoglycan binding protein, putative [Sulfitobacter sp. EE-36] gi|83846554|gb|EAP84430.1| peptidoglycan binding protein, putative [Sulfitobacter sp. EE-36] Length = 528 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 116/372 (31%), Positives = 193/372 (51%), Gaps = 11/372 (2%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQ 112 +F++ ++ + E A + + + +L++GGW P +P L G V Sbjct: 151 DFISSDPTPFLRNLRPRTMEYNALMREKL-RMEHLLTQGGWGPAVPASSLKPGAQGTQVV 209 Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 LR RL+ G L S ++ +DA ++ AV+ FQ HGL+ G+ S T+ +N V+ R Sbjct: 210 ALRNRLMSMGYLKRSNVMT--YDATLQEAVRSFQKDHGLNEDGVAGSGTMAEINKSVETR 267 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG--RVDRQTPI 230 ++ + V + R + L ++ G R+VLVNIPA + V+NG+V + +VG + DR TP Sbjct: 268 LQSVIVAMERER-WLNKERGARHVLVNIPAFTASVVDNGQVTFETRSVVGANQSDRLTPE 326 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 + I+ NP W +PRSI+ K+ + ++++P +I +ID +G+ + V+++ Sbjct: 327 FSDVMEYIVINPTWTVPRSIVTKEYLPSMQRNPN--AAGHIDLIDNRGRIISRGSVNFSR 384 Query: 291 PEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 F + RQ PG+ NA+ K F ++ N Y+HDTP LF+ VR + GCVR+ + Sbjct: 385 YTARTFPYGMRQKPGRTNALGLVKFIFPNKYNIYLHDTPSKSLFDRDVRAFSHGCVRLAD 444 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 D LL + + + T + T V L TEVPVH +Y +A++ Q+R D Sbjct: 445 PFDFAYTLLAPQAADPVAYFKRQLATGRETFVHLDTEVPVHIIYRTAFTTPRGHTQYRAD 504 Query: 409 IYGLDNVHVGII 420 IYG D + Sbjct: 505 IYGRDGRIWDAL 516 >gi|312114029|ref|YP_004011625.1| peptidoglycan-binding protein [Rhodomicrobium vannielii ATCC 17100] gi|311219158|gb|ADP70526.1| Peptidoglycan-binding domain 1 protein [Rhodomicrobium vannielii ATCC 17100] Length = 428 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 149/382 (39%), Positives = 220/382 (57%), Gaps = 8/382 (2%) Query: 41 NESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR 100 ++S+ + DR F + + P ++KE IA T+ AI Y +I++RGGWP+LP Sbjct: 45 DDSWEQPMRDR--AFQREWETQPERGFPTLAKENIATTKTAIKQYAEIVARGGWPQLPPI 102 Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G S +V +LR RL ++GDL G FD+YVE AVK Q RHG+ P+G +D + Sbjct: 103 ELRTGMSHPAVVQLRTRLQVTGDLQAYGGYPEVFDSYVEQAVKRAQERHGIPPTGFLDQT 162 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T+EA+NVP R+RQL+ NL R++ L+ +YV+VNIPAA +EAV N +V R + Sbjct: 163 TIEALNVPASARLRQLRTNLARLQSLVPGTPAGKYVIVNIPAAQIEAVNNNQVISRHAGV 222 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI-----D 275 VG+ DR +P+L+S I I FN WV+P ++++ D++ R L I Sbjct: 223 VGKPDRPSPLLNSAIEEINFNKEWVVPPTVLKYDLVPKGRGGQDVLAKYKIDAYATHEDY 282 Query: 276 EKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 +KGK++ ++DW+S P + + Q PG N + KI F S YMHDTP +F Sbjct: 283 QKGKKLDASQIDWSSDAPLRYFYVQAPGDENPLGFAKINFASPQGVYMHDTPGQSVFQRS 342 Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 R ++SGC+RV+NI L WLL+D WS + + ++ + V+L VP+++ YI+A Sbjct: 343 FRADSSGCIRVQNIHQLVAWLLEDN-GWSVQQVLRMKQSGERLFVRLKKRVPLYWTYITA 401 Query: 396 WSPKDSIIQFRDDIYGLDNVHV 417 WS D +QFR DIY D V Sbjct: 402 WSTPDGTVQFRRDIYRKDGVEA 423 >gi|227356807|ref|ZP_03841192.1| peptidoglycan binding domain protein [Proteus mirabilis ATCC 29906] gi|227163097|gb|EEI48032.1| peptidoglycan binding domain protein [Proteus mirabilis ATCC 29906] Length = 571 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 102/375 (27%), Positives = 170/375 (45%), Gaps = 18/375 (4%) Query: 51 RFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSV 109 + + + + S P S ++ + + + WP + + L S+ Sbjct: 188 QLNLQQNTLGRFVVSFAP--SHPYYPLMKEEVR--KQLHQEVIWPVMEGKNSLKPNQSAE 243 Query: 110 SVQRLRERLIISGDLD-----PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 V LR+ L L + + +D + +AVK FQ HGL+ G++ T Sbjct: 244 EVIALRQILRNLNLLPQLAENEQEVATTIYDEPLIAAVKSFQAAHGLETDGIIGRQTRNW 303 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 +N+ R + +N+ R++ +G + VNIP SL N ++ L S VIVGR Sbjct: 304 LNMTPIQRAGIMALNIQRLRLTPP--IGDTGIWVNIPDYSLYFYANNQLILDSKVIVGRP 361 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---V 281 DR+TPI+ S +N ++ NP W +P S+ +KD++ + DP Y + G + + Sbjct: 362 DRKTPIMSSALNNVVVNPPWNVPTSMTRKDIVPKGKADPSYFSRKGYTIYSGWGNDAYPI 421 Query: 282 FVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 ++DW + NF +R Q PG N++ K + Y+HDTP LF +R Sbjct: 422 NPYDIDWENISAANFPYRIWQAPGPTNSLGRYKFNMPNSEAIYLHDTPNHNLFTKNMRAI 481 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 +SGC+RV L LL D W + I+ +K T + +PV+ Y +AW + Sbjct: 482 SSGCIRVNKAAQLATILLGDA-GWKQDRIDAALKRGSTQYAPIPERIPVYLYYQTAWVAE 540 Query: 400 DSIIQFRDDIYGLDN 414 ++ Q+R DIY D Sbjct: 541 ENAPQYRADIYNYDQ 555 >gi|197284624|ref|YP_002150496.1| hypothetical protein PMI0730 [Proteus mirabilis HI4320] gi|194682111|emb|CAR41705.1| conserved hypothetical protein [Proteus mirabilis HI4320] Length = 571 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 103/375 (27%), Positives = 171/375 (45%), Gaps = 18/375 (4%) Query: 51 RFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSV 109 + + + + S P S ++ + + + WP + + L S+ Sbjct: 188 QLNLQQNTLGRFVVSFAP--SHPYYPLMKEEVR--KQLHQEVIWPVMEGKNSLKPNQSAE 243 Query: 110 SVQRLRERLIISGDLD-----PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 V LR+ L L + + +DA + +AVK FQ HGL+ G++ T Sbjct: 244 EVIALRQILRNLNLLPQLAESEQEVATTIYDAPLIAAVKSFQAAHGLETDGIIGRQTRNW 303 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 +N+ R + +N+ R++ +G + VNIP SL N ++ L S VIVGR Sbjct: 304 LNMTPIQRAGIMALNIQRLRLTPP--IGDTGIWVNIPDYSLYFYANNQLILDSKVIVGRP 361 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---V 281 DR+TPI+ S +N ++ NP W +P S+ +KD++ + DP Y + G + + Sbjct: 362 DRKTPIMSSALNNVVVNPPWNVPTSMTRKDIVPKGKADPSYFSRKGYTIYSGWGNDAYPI 421 Query: 282 FVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 ++DW + NF +R Q PG N++ K + Y+HDTP LF +R Sbjct: 422 NPYDIDWENISAANFPYRIWQAPGPTNSLGRYKFNMPNSEAIYLHDTPNHNLFTKNMRAI 481 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 +SGC+RV L LL D W + I+ +K T + +PV+ Y +AW + Sbjct: 482 SSGCIRVNKAAQLATILLGDA-GWKQDRIDAALKRGSTQYAPIPERIPVYLYYQTAWVAE 540 Query: 400 DSIIQFRDDIYGLDN 414 ++ Q+R DIY D Sbjct: 541 ENAPQYRADIYNYDQ 555 >gi|256419987|ref|YP_003120640.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] gi|256034895|gb|ACU58439.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] Length = 549 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 110/409 (26%), Positives = 177/409 (43%), Gaps = 9/409 (2%) Query: 18 LILPMGLSLVEKPIHASVLDEIIN--ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 L+L + + + + E + ++ L + S Sbjct: 140 LLLTAQFFAYGNKVWSGLTSDSAKSLEWFIPRKKINMESLLDSMVNKPASAFEEPVNRQY 199 Query: 76 AQTEKAIAFYQDILSRGGWPELPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + D+ W L + S V +++RL + GDL S Sbjct: 200 KLLRNQLKKLSDLEKMP-WDSLKASRKLYKKEESDPLVTSVKQRLHLLGDL-ALADTSQL 257 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 F ++SA++ FQ R GL G + + L A+NV RIRQ+ +N+ RI+ + + Sbjct: 258 FTPALDSAIRNFQDRTGLKTDGTIQAPLLNALNVTPRQRIRQILINMERIR-WVPAEPPA 316 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 Y+LVNIPA L N K+ V+VG+ T I + + ++F PYW +P I+ Sbjct: 317 EYLLVNIPAFKLYVYNNNKLDWTCNVVVGKPGANTVIFSNEVKYVVFAPYWNVPPGILVN 376 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAST 311 +++ ++++ YL N+ ++ G V ++W NF + RQ PG NA+ Sbjct: 377 EVLPAMKRNTGYLARQNMEVVTGSGSPVNAGSLNWARYSGGNFPYIIRQKPGGHNALGKV 436 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F + N Y+HDTP LF R + GC+RV L WLL+ TW++ I E Sbjct: 437 KFLFPNEYNIYLHDTPSKGLFGENKRTFSHGCIRVSEPQHLAEWLLRKDSTWTQKKIVEA 496 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + K V L VPV+ Y +A+ D + FRDD+YG D + Sbjct: 497 MNGSKEKFVTLKERVPVYIGYFTAFVDSDGRLNFRDDVYGHDAKLAATL 545 >gi|224369240|ref|YP_002603404.1| hypothetical protein HRM2_21420 [Desulfobacterium autotrophicum HRM2] gi|223691957|gb|ACN15240.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 549 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 108/413 (26%), Positives = 184/413 (44%), Gaps = 24/413 (5%) Query: 22 MGLSLVEKPIHASVLDEIINESY---HSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 + +V + A + + + + D F + Sbjct: 144 LKSYMVNPELFAEAGERGFDPLKMVETILATENLDEFFQSLPPQ---------HHQYRGL 194 Query: 79 EKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV---AF 134 K + Y + G W +L + G+ + +R+R+ + + + S + Sbjct: 195 RKGLLHYGLLKYSGKWKDLSGTESIRPGDEDERIVEIRKRIALLENDNKEISKSAEPSVY 254 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D + V LFQ HGL G++ +T++ +N + R+ Q+++N+ R + + +G + Sbjct: 255 DHELLKKVVLFQQTHGLVQDGIIGRNTIQELNKSPEDRVDQIKINMARWR-WQDHGLGDK 313 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y+LVNI SL A + G++ VIVG+ QTP+ +I + NPYW +P SI + Sbjct: 314 YILVNIANYSLYACKTGELKFSMPVIVGKFQHQTPVFSDKIKYLELNPYWNVPSSIAVNE 373 Query: 255 MMALLRQDPQYLKDNNIHMIDEK---GKEVFVEEVDWNSPEPP---NFIFRQDPGKINAM 308 + LR++P YL + NI + G E+ ++W P F RQDPG NA+ Sbjct: 374 DLPGLRKNPSYLVEKNIRLFSNWQKDGVEIDSTAINWKRVTPSEMARFKLRQDPGPTNAL 433 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL-KDTPTWSRYH 367 K F + + Y+HD+P LF+ R + GC+RV L V+LL ++ W+ Sbjct: 434 GRVKFVFPNHYSVYLHDSPAKRLFSEQKRSFSHGCIRVSEPEKLAVFLLDEEGSEWNIEQ 493 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 I +++ K +K+ VPVH Y +AW KD I F D+YG D + Sbjct: 494 IHDLISQGKRKVLKIRLPVPVHITYQTAWVDKDDEILFNGDVYGRDEKLYKAL 546 >gi|260427999|ref|ZP_05781978.1| peptidoglycan-binding domain 1 protein [Citreicella sp. SE45] gi|260422491|gb|EEX15742.1| peptidoglycan-binding domain 1 protein [Citreicella sp. SE45] Length = 544 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 112/416 (26%), Positives = 189/416 (45%), Gaps = 15/416 (3%) Query: 11 LYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPII 70 L F+ + +++ +D I + ++ LAR D Sbjct: 126 LSRTFLKYAHDLNGGMLDGR----RIDSGIKRPPQRLASEGLLQDLARRDPRAVLRDLAP 181 Query: 71 SKETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 A+ + ++ GGW + L G + V LR+RL+ L PS Sbjct: 182 HSPEYARLMHEKLTLEHRIAHGGWGATVRSGKLEPGQTGADVVALRDRLVAMNYLAPS-- 239 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL-LE 188 LS +D + +AV FQ HGL G+ SSTL A+NV + R++ + V + R + L + Sbjct: 240 LSARYDDAIVAAVSRFQEDHGLKVDGVAGSSTLSAINVGPEERLKSVIVAMERERWLNMP 299 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVI 246 + +G R++LVN+ +++GKV + +VG DR+TP R+ ++ NP W + Sbjct: 300 EGLGARHILVNLVDFHARIIDDGKVSFETRSVVGHQDPDRRTPEFSDRMEFMVINPSWYV 359 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGK 304 PRSI+ + + LR++P + ++ + D G+ V + +F + RQ PG Sbjct: 360 PRSIVVNEYLPQLRRNPGAVS--HLEITDSSGRRVNRGR-GFAQYSAASFPYAMRQPPGP 416 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 NA+ + K F ++ N Y+HDTP LFN R + GC+R+ + D LL Sbjct: 417 RNALGTVKFMFPNKYNIYLHDTPSKSLFNQNQRTYSHGCIRLGDPHDFAYALLARQTDDP 476 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + ++T T V L VPVH +Y +A++ + +R D+YG D + Sbjct: 477 VGFFQSRLRTGSETRVNLDEPVPVHLIYRTAFTKAKGQVNYRPDVYGRDARIWAAL 532 >gi|85702799|ref|ZP_01033903.1| peptidoglycan binding protein, putative [Roseovarius sp. 217] gi|85671727|gb|EAQ26584.1| peptidoglycan binding protein, putative [Roseovarius sp. 217] Length = 541 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 102/366 (27%), Positives = 184/366 (50%), Gaps = 11/366 (3%) Query: 60 DMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWP-ELPIRPLHLGNSSVSVQRLRERL 118 + P S E ++ + + +++ GGW +P L G++ SV LR RL Sbjct: 170 AFKVMRSFPPHSNEYARLLKEKL-RLERLIALGGWGGAVPAETLRPGDTGQSVVALRNRL 228 Query: 119 IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 I G + S S +DA ++ AV+ FQ HGLD G+ +T+ A+N R++ + V Sbjct: 229 IAMGYVTRSA--SQTYDARLQQAVQAFQTDHGLDADGVAGGATMAALNTSASERLKSVIV 286 Query: 179 NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTPILHSRIN 236 + R + L + G R++LVN+ S ++N +V + ++G+ D R++P + Sbjct: 287 AMERER-WLTEDRGTRHILVNLTDFSARILDNDQVTFATRAVIGKNDAGRRSPEFSDEME 345 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF 296 ++ NP W +P SI + + ++++P +++ + + G+EV V++ + NF Sbjct: 346 HMVVNPTWHVPYSIAVNEYLPQMQRNPG--AASHLKLYNRNGREVSRGAVNFGAYNARNF 403 Query: 297 IF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 F +Q P + NA+ K F ++ N Y+HDTP+ LF+ R + GC+R+ D Sbjct: 404 PFAIKQPPSERNALGLVKFMFPNKYNIYLHDTPQKALFDLEKRDFSHGCIRLHQPFDFAY 463 Query: 355 WLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 LL + + + + V+ TR+ T V+L VPVH +Y +A++ Q+R D+YG D Sbjct: 464 ALLAKQESDPQAYFKSVLDTRRETYVQLEQHVPVHIIYRTAFTQAQGRPQYRGDVYGRDG 523 Query: 415 VHVGII 420 + Sbjct: 524 RIWDAL 529 >gi|183598377|ref|ZP_02959870.1| hypothetical protein PROSTU_01769 [Providencia stuartii ATCC 25827] gi|188020553|gb|EDU58593.1| hypothetical protein PROSTU_01769 [Providencia stuartii ATCC 25827] Length = 575 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 128/445 (28%), Positives = 191/445 (42%), Gaps = 57/445 (12%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ LY Y I E + + +R Sbjct: 140 MLGYLQYLSGVSANGQFWLYRKQPYKIAA-------------PTAEQMKPWLDAAAENRL 186 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQ 112 + ++ P + +E + Q + + G + + L G SS V Sbjct: 187 NEWVKLQSPQHSLYQP-MREEMLKQLK---------MDDDGLALVDTKTLKPGQSSDDVI 236 Query: 113 RLRERLIISGDLDPSK------------------GLSVAFDAYVESAVKLFQMRHGLDPS 154 LRE L G LD + + + + AVK FQ R+GL+ Sbjct: 237 ALREILYRQGLLDETAINTELDAAAPDAEIAKATAQARLYSDELVEAVKKFQQRYGLEAD 296 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 GMV T +N+ + + +N+ R++ + E +LVNIPA SL N +V Sbjct: 297 GMVGKGTKVWLNMKPQQKAGLMALNIQRLRIIPENN--GTGILVNIPAFSLNFFLNDEVI 354 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 L S VIVGR DR+TPI+ S +N ++ NP W +P S+ +KD+ +QDP Y + Sbjct: 355 LDSKVIVGRPDRKTPIMSSALNNVVINPPWSVPTSMARKDIAPRGKQDPSYFSRKGYTVY 414 Query: 275 DEKGK---EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 G+ E+ ++W+ P NF + RQ PG N++ K S + Y+HDTP Sbjct: 415 SGWGEDSFEIDPYSINWDVITPANFPYRIRQAPGPTNSLGRYKFNMPSSDAIYLHDTPNH 474 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LFN R +SGCVRV +L LL D W + I+ VK T V + +PV+ Sbjct: 475 SLFNRSARAISSGCVRVNKASELASILLGDA-GWEQKRIDGAVKAGSTRYVNIPDRIPVY 533 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDN 414 Y +AW K+ Q+R DIY DN Sbjct: 534 LYYQTAWVDKEQQPQYRADIYQYDN 558 >gi|326797793|ref|YP_004315612.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobacterium sp. 21] gi|326548557|gb|ADZ76942.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobacterium sp. 21] Length = 548 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 179/381 (46%), Gaps = 20/381 (5%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL--PI 99 +D D+ L + I + ++ Q + Y+++ ++ W + Sbjct: 181 PKKRVSYSDYLDSLLKHPFNETGASIEPVYRQ-YEQLRGYLKKYRELAAKHKWNPIIADK 239 Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + +G+SS +++++ RL + GD L+ +D+ + S V+ FQ RHGL P G + S Sbjct: 240 KSYKIGDSSTVLRQIKTRLFLLGDY-QGDTLTNLYDSTLFSGVRSFQSRHGLRPDGAIGS 298 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 T+ +NV R++Q+ VN+ R + L + Y+ VNIP L + V Sbjct: 299 GTINELNVLPAARLKQIAVNMERSR-WLPVSLKTDYLAVNIPEFKLHVYHADSLLWSCNV 357 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 +VG+ +T I H + ++F+PYW +P SI++ +++ +R+D Y+ +N+ + + G Sbjct: 358 VVGKAMHKTVIFHGDVKYVVFSPYWNVPPSIVKNEILPGMRRDRNYIAKHNMEITGKSGG 417 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 RQ PG N++ K F + N Y+HD+P L+N R Sbjct: 418 LPN---------------VRQKPGPKNSLGLVKFLFPNSYNIYLHDSPAKSLYNESSRAF 462 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 + GC+RV L +LL+ TW++ I + + K V L VPV Y +A+ + Sbjct: 463 SHGCIRVSEPEKLANFLLRSDSTWNKESIYKAMHAGKEKYVTLKKTVPVFIAYFTAFIDR 522 Query: 400 DSIIQFRDDIYGLDNVHVGII 420 + I FR DIY D+ ++ Sbjct: 523 EGKINFRKDIYDRDDRLAKML 543 >gi|51244920|ref|YP_064804.1| hypothetical protein DP1068 [Desulfotalea psychrophila LSv54] gi|50875957|emb|CAG35797.1| hypothetical protein DP1068 [Desulfotalea psychrophila LSv54] Length = 561 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 110/356 (30%), Positives = 186/356 (52%), Gaps = 11/356 (3%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISG-DLDPSKGLSV 132 + A+A+Y++ G WP++ + LH G+ + +R+RL +G L+ + + Sbjct: 205 YKALKTALAYYRNFAKNGDWPKVAMGVNLHPGDREKRIISIRKRLQFAGPFLEAPRDSDL 264 Query: 133 A-FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 + +D +E AV FQ HGL G++ +T++A+N+ + +I +++N+MR + + Sbjct: 265 SQYDLILEEAVLSFQQLHGLQTDGIIGRNTVDALNISIAEKIEIIRLNMMRWR-WQAHDL 323 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G RY+LVNI + +L+A + V L +IVG + +TP+ + I I FNP+W IP SI Sbjct: 324 GKRYLLVNIASFNLKAFRDQDVVLDMPIIVGTEENETPVFSAWIKYIDFNPFWNIPTSIA 383 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEPPN---FIFRQDPGKI 305 + +M+ LR++ YL D I + + E+ +DW + P + RQDPG + Sbjct: 384 RNEMLPALRKNNYYLIDQRISLFSNWQQSAVELDSTAIDWEAITPSEISAYKLRQDPGPL 443 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP-TWS 364 NA+ K F + + YMHDTP LF+ R + GC+RV + + L ++LL++ W Sbjct: 444 NALGRIKFIFPNSYSVYMHDTPGRHLFSLSKRSFSHGCIRVSDPLSLAIFLLENQTDGWD 503 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 I+E+ + + + L V VH Y +AW K I F DIY D + Sbjct: 504 TEKIKEIYEQEERKVIILTLSVAVHITYGTAWVDKGGEIHFSRDIYLRDERLRNAL 559 >gi|27377895|ref|NP_769424.1| hypothetical protein bll2784 [Bradyrhizobium japonicum USDA 110] gi|27351041|dbj|BAC48049.1| bll2784 [Bradyrhizobium japonicum USDA 110] Length = 449 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 145/353 (41%), Positives = 206/353 (58%), Gaps = 3/353 (0%) Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDP 126 P + + + + A Y D+ RGGWP +P LG + LR+RLI+SGDL Sbjct: 77 PTYDEGSAQRIKDAALSYSDLAVRGGWPTIPADAKFALGVQGANDDLLRKRLIVSGDLS- 135 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + S AFD + AVK FQ RHGL P+GMV TL AMNV V RIRQL+ +L R++ Sbjct: 136 ADKASGAFDQDLADAVKRFQARHGLAPTGMVTPRTLAAMNVSVQKRIRQLEASLQRLEN- 194 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + G RYV+VNIPAA EAVEN V R VIVG+ ++ +P L ++I ++ NP W + Sbjct: 195 MNFGFGQRYVVVNIPAAFAEAVENDVVVRRYRVIVGKTEKPSPTLTAQITSVVLNPTWTV 254 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SI + ++ A +R+DP YL ++ ++D + VDW+ PNF RQ G N Sbjct: 255 PSSIAKTEISAHMRKDPTYLSRMHMEVLDAHDNPIDPHSVDWSGTHTPNFTVRQQNGTFN 314 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 A+ + KI+ + + YMHDT + LF++ RF++ GC RV N+ DL WLLKD P WSR Sbjct: 315 ALGAVKIDMPNAYSVYMHDTNQRNLFSDDYRFDSHGCSRVDNVRDLAAWLLKDQPKWSRA 374 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGI 419 I+ + T + V +A +VPV + Y++AW KD +QFR+D+Y D + Sbjct: 375 AIDAEIATGQHLDVAMAKKVPVAWTYLTAWMTKDQTVQFRNDVYNQDEQLLEA 427 >gi|330013904|ref|ZP_08307828.1| peptidoglycan binding domain protein [Klebsiella sp. MS 92-3] gi|328533309|gb|EGF60058.1| peptidoglycan binding domain protein [Klebsiella sp. MS 92-3] Length = 389 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 113/374 (30%), Positives = 177/374 (47%), Gaps = 31/374 (8%) Query: 68 PIISKETIAQTEKAIAFYQDILS----RGGWPELP-IRPLHLGNSSVSVQRLRERLIISG 122 P + + A +Q +L+ WP++ L G S + LRE L +G Sbjct: 1 PAFIAGLAPRHPQYEAMHQSLLALVADSRPWPQMTGSGSLRPGEWSNDIGALREILQRTG 60 Query: 123 DLDPSK-------------------GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 L+ S +D + VK FQ GL G++ ST + Sbjct: 61 MLENSANIVLPGDVVSPSAKKKSKPAARGVYDRQLVEGVKRFQAMQGLGADGVIGQSTRD 120 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 +NV R L +N+ R++ LL K+ ++VNIPA SL ++G L S VIVGR Sbjct: 121 WLNVSSAQRAGVLALNIQRLR-LLPGKLS-TGIMVNIPAFSLVYYQDGSQVLASRVIVGR 178 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--V 281 DR+TP++ S +N ++ NP W +P ++ +KD++ +R +P YL+ + ++ + + Sbjct: 179 PDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNNPGYLEQHGYTVMRGWNSKETI 238 Query: 282 FVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 VDW++ N FR Q PG N++ K S + Y+HDTP LF VR Sbjct: 239 DPYRVDWSTITENNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPNHNLFQKDVRAL 298 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 +SGCVRV +L LL+D W+ I + +K T V + +PV+ Y++A+ Sbjct: 299 SSGCVRVNKASELANMLLQDA-GWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTAFVDA 357 Query: 400 DSIIQFRDDIYGLD 413 D Q+R DIY D Sbjct: 358 DGRTQYRTDIYNYD 371 >gi|300722551|ref|YP_003711841.1| putative carboxypeptidase [Xenorhabdus nematophila ATCC 19061] gi|297629058|emb|CBJ89643.1| putative carboxypeptidasewith PGDB-like domain [Xenorhabdus nematophila ATCC 19061] Length = 572 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 125/430 (29%), Positives = 192/430 (44%), Gaps = 43/430 (10%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y I ++EK Sbjct: 151 MLGYLHFVNAVKGKGDSWLYSKTPYKIYLPSPHIIEK------------------WQQHI 192 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSV 111 +N + V I S P + K + + + W E ++ L LG S+ ++ Sbjct: 193 NN--SNVLSYIMSLSP--NHPMYENMRK--EMLEQLSDKQPWTEFLLKSTLRLGQSNENM 246 Query: 112 QRLRERLIISGDLDPSKGLSV--AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 L + L+ SG LDPS S ++ + +AVK FQ HGL G++ ST +N Sbjct: 247 AALEKILVRSGVLDPSVTNSDNKVYNKALVAAVKRFQTLHGLAADGVIGQSTKTWLNTAP 306 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 +R R + +N+ R++ + + VNIP SL+ NGK L S V+VGR R+TP Sbjct: 307 QIRARIMALNIQRLRIIPGDI--PTGIFVNIPNYSLDYYLNGKEVLNSKVVVGRPSRKTP 364 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEV 286 I+ S +N ++ NP W +P S+ +KD+ +DP Y + + + + + Sbjct: 365 IMSSELNNVVINPPWNVPTSMTRKDIAPRAMRDPGYFRTRGYTVFSSWSNDAKVIDSSSI 424 Query: 287 DWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 +W P NF + RQ PG N++ K + + Y+HDTP FN +R +SGCV Sbjct: 425 NWGVVTPGNFPYRIRQAPGPTNSLGRFKFNMPNSDAIYLHDTPNQTAFNREMRAISSGCV 484 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQ 404 RV +L LL D W + + +KT T V + ++PV Y +AW K I Q Sbjct: 485 RVNKAPELADMLLGDA-GWDKSKVNNSLKTWATKYVSIPKKIPVFLYYQTAWVDKKGIPQ 543 Query: 405 FRDDIYGLDN 414 +R DIY D Sbjct: 544 YRADIYDYDT 553 >gi|325106518|ref|YP_004276172.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter saltans DSM 12145] gi|324975366|gb|ADY54350.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter saltans DSM 12145] Length = 548 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 106/378 (28%), Positives = 180/378 (47%), Gaps = 25/378 (6%) Query: 49 NDRFDNFLA-RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI----RPLH 103 +D D+ L + + P+ + + Y+++ S+ + + + Sbjct: 188 SDLLDSLLTNKSSVYTVEGRPVY--RQYMLLKSFLTKYRELESQREVTTIGLDAGKKSYK 245 Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +G+SS ++ ++R+RL GD S LS +DA ++ AV FQ RHGL G++ + T++ Sbjct: 246 IGDSSDNIVKIRKRLHFLGDYKESDTLSALYDANLKEAVSNFQERHGLTNDGVIGAGTIK 305 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 MNVP+ R++ + VN+ R + + + Y+ VNIP L + V+VG+ Sbjct: 306 EMNVPLRDRVKTIIVNMERFR-WVPAGLNKEYLGVNIPEYKLHVYNADSLLWSCNVVVGK 364 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-EKGKEVF 282 +T + + I+F+PYW +P SI++ +++ + ++ YLK +N+ + E G V Sbjct: 365 ELHKTVVFQGDLKYIVFSPYWNVPPSIVRNEILPAMNRNAGYLKQHNMEITGHENGLPV- 423 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 RQ PGK N++ K F + N Y+HDTP LF+ R + G Sbjct: 424 ---------------IRQLPGKDNSLGLVKFLFPNNFNIYLHDTPAKSLFSMEDRAFSHG 468 Query: 343 CVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 C+RV L +LLKD W I++ + K V L VPV Y +A+ + Sbjct: 469 CIRVSEPKKLAEFLLKDDKAWDSISIDKAMHQTKEKWVTLKNPVPVFISYFTAFVDRKGQ 528 Query: 403 IQFRDDIYGLDNVHVGII 420 I FR DIY D+ +I Sbjct: 529 INFRKDIYDRDSALEKMI 546 >gi|94312745|ref|YP_585954.1| hypothetical protein Rmet_3815 [Cupriavidus metallidurans CH34] gi|93356597|gb|ABF10685.1| conserved hypothetical protein (peptidoglycan-binding domain) [Cupriavidus metallidurans CH34] Length = 540 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 101/374 (27%), Positives = 172/374 (45%), Gaps = 12/374 (3%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW----PELPIRPLHLGNSSVSVQR 113 R+ I P S A++ Y+ + ++ W P P L +G + + Sbjct: 153 RLPAAIHEAAP--SFPLYPTLRDALSRYRALATQPLWNTPLPTPPGNKLAIGQPYDGLAQ 210 Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 + +RL GDL + ++ + +AV+ FQ RHGLD G++ TL +N R+ Sbjct: 211 MAQRLEALGDLPQGTPVPKKYEGALVTAVESFQKRHGLDADGVIGQGTLAQLNTTPSERV 270 Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE--NGK--VGLRSTVIVGRV-DRQT 228 +Q+ + + R++ G R ++VNIP L A + +GK + L VIVG+ + +T Sbjct: 271 KQIALTMERLR-WTPLTAGPRVIVVNIPEFMLRAYDYVDGKLDIKLEMKVIVGKALNTRT 329 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P+ + I F+PYW +P SI + +++ R+DP Y + + + Sbjct: 330 PMFREDMRYIEFSPYWNVPPSIARSEVVPKSRRDPGYFTRQGFEFVSGGQAITTLSSANL 389 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 ++ RQ PG +NA+ K F + N Y+H TP P LF R + GC+RV Sbjct: 390 DAVLNGQMRIRQRPGPLNALGDIKFVFPNNQNIYLHHTPTPQLFQRGRRDFSHGCIRVEE 449 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 + L ++L+D P W+ I + + K+ + L +PV Y +A + D + F D Sbjct: 450 PVQLAKFVLQDMPEWTEERIRQAMSKGKSNTIALKQPLPVVLAYGTAIARADGRVYFLPD 509 Query: 409 IYGLDNVHVGIIPL 422 IYG D + + Sbjct: 510 IYGQDKLLEQALRQ 523 >gi|170742780|ref|YP_001771435.1| peptidoglycan binding domain-containing protein [Methylobacterium sp. 4-46] gi|168197054|gb|ACA19001.1| Peptidoglycan-binding domain 1 protein [Methylobacterium sp. 4-46] Length = 545 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 138/365 (37%), Positives = 201/365 (55%), Gaps = 9/365 (2%) Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRER 117 + P ++ T T + YQ I+ GGWP +P L G+ V LR R Sbjct: 119 LAPVSQDPTPTLTPATFLDTLRMADRYQAIVQAGGWPSVPASLSLKPGDRHPGVLALRRR 178 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 L + DL +S D + +AV FQ RHGL +G+V + T++A+NVP +R RQL Sbjct: 179 LAATEDLPADAPVSDRMDEALVAAVTRFQHRHGLPETGLVGAMTVKALNVPASVRQRQLA 238 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 + R+ G RYV+ NIPAA++EAVE G V R +VG+ DR +P++ +RI Sbjct: 239 ASAARLMG-SRFPFGERYVVANIPAAAVEAVERGAVVRRYVAVVGKPDRASPMVETRITN 297 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 + FNP W +P S+I+KD++ +R+DP YL +I M+D +G EV +DW++ + N+ Sbjct: 298 VNFNPTWTVPVSLIKKDIIPHMRKDPGYLAKMHIRMLDGQGNEVQPTAIDWSTEKAVNYT 357 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 RQDPG N++ +I+ +R+ YMHDTP LF +RF +SGCVRV + L WLL Sbjct: 358 VRQDPGFDNSLGQVRIDMPNRHAVYMHDTPSKSLFTRTIRFHSSGCVRVAEVKGLVAWLL 417 Query: 358 KDTPTWSRY-------HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 + TP IE + T + +KLA VPV FVY++ ++ D FRDD+Y Sbjct: 418 EGTPGPGGPGTVWGPIEIETGIATGERRDIKLAKPVPVTFVYLTGYATPDGRAHFRDDVY 477 Query: 411 GLDNV 415 LD Sbjct: 478 NLDGA 482 >gi|53804877|ref|YP_113480.1| hypothetical protein MCA1003 [Methylococcus capsulatus str. Bath] gi|53758638|gb|AAU92929.1| conserved hypothetical protein [Methylococcus capsulatus str. Bath] Length = 554 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 113/378 (29%), Positives = 186/378 (49%), Gaps = 17/378 (4%) Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLI 119 G++S +P+ + A+ Y+ + L + P L G+ V LR+RL Sbjct: 182 AGLESKLPL-----YRNLKAALPRYRGLAENNDVSALALPPKLSPGDRHGEVPALRKRLA 236 Query: 120 ISGDL--DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 G L + S + + AV FQ RHGL P G++ TL A+NVP R+RQ++ Sbjct: 237 ALGFLWQESSSKEPEVYAGDLVEAVARFQERHGLAPDGVIGKGTLAALNVPPAARLRQIR 296 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAV--ENGKVGLRSTVIVGRVD--RQTPILHS 233 + L R++ L E+ G ++LVNIP+ L + + + V+VGR TP+ HS Sbjct: 297 LGLERLRWLPERFEGP-FILVNIPSFRLYGYGQDPERPEVSMNVVVGRSSGGHNTPVFHS 355 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV---FVEEVDWNS 290 + ++F PYW +PR+I K+M+ + +DP YL +N+ ++ G Sbjct: 356 DMTYVVFRPYWNLPRAITVKEMLPGILRDPGYLARHNLELVPSFGNGSQVYEPSLESLEM 415 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + RQ PG NA+ K F + +N Y+H TP LF R + GC+RV++ + Sbjct: 416 LSAGSLKLRQRPGPKNALGLVKFAFPNNDNIYLHGTPSVNLFQRARRDFSHGCIRVQDPV 475 Query: 351 DLDVWLLK-DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 L ++LK + TW++ IEE + ++ V L +PV+ Y + + D ++F +DI Sbjct: 476 GLAEFVLKREGETWTQERIEEAMNGAQSRTVTLKQPLPVYIYYSTVLAEPDGTVRFFEDI 535 Query: 410 YGLDNVHVGIIPLPEDHP 427 YGLD V ++ +P Sbjct: 536 YGLDRVLEQLLEKGFPYP 553 >gi|126726524|ref|ZP_01742365.1| peptidoglycan binding protein, putative [Rhodobacterales bacterium HTCC2150] gi|126704387|gb|EBA03479.1| peptidoglycan binding protein, putative [Rhodobacterales bacterium HTCC2150] Length = 535 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 109/395 (27%), Positives = 188/395 (47%), Gaps = 10/395 (2%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 + S ++ +I + L + + + S KA + + Sbjct: 134 LTPSSVNSLIARKAPRRGDQDLLEALMKSNPSRFMKSLVPSSPEYTALLKAKRSLERAIG 193 Query: 91 RGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 GW P + + L G S V LR R+I G L S S +D + A++LFQ + Sbjct: 194 STGWGPTVRAKSLKPGQSGAEVVALRNRMIRMGYLRKSA--SQKYDTNLTKAIQLFQQDN 251 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL P G+ + T++ +NV + R++Q+ V + R ++ L +G R+V VN+ + Sbjct: 252 GLLPDGVSGADTIKVVNVSANTRLQQVIVAMER-RRWLNIDLGKRHVFVNLADFRASIIN 310 Query: 210 NGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 NGKV + +VG+ DR+TP + ++ NP W +PRSI K+ + +L+++P + Sbjct: 311 NGKVEFSTRAVVGKNISDRRTPEFSDVMTHMIINPTWHVPRSIAVKEYLPMLKKNPGAVS 370 Query: 268 DNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHD 325 ++ M+D G+ V VD+ + +F F +Q P NA+ K F +++N Y+HD Sbjct: 371 --HLRMVDASGRTVSRTNVDFTAYTTKSFPFNLKQPPSNGNALGRVKFMFPNKHNIYLHD 428 Query: 326 TPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATE 385 TP LF VR + GC+R+ + D LL + + + + +KT+ T L + Sbjct: 429 TPAKSLFARNVRAYSHGCIRLADPFDFAYALLSKEMSNGKDYFQRTLKTKVETQYTLKSS 488 Query: 386 VPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + VH Y +AW P + +R DIYG D + + Sbjct: 489 LKVHIDYRTAWVPAKGRVNYRRDIYGRDALIFKAL 523 >gi|307545799|ref|YP_003898278.1| hypothetical protein HELO_3209 [Halomonas elongata DSM 2581] gi|307217823|emb|CBV43093.1| hypothetical protein HELO_3209 [Halomonas elongata DSM 2581] Length = 546 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 114/379 (30%), Positives = 180/379 (47%), Gaps = 22/379 (5%) Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP--IRPLHLGNSSVSVQRLRE 116 V ID P Q + +A Y++I +GGWP L PL G++ V LRE Sbjct: 171 VSAAIDLARPPYEP--YEQLREGLAHYREIKRQGGWPALMNVEDPLRPGDTGTEVTALRE 228 Query: 117 RLII----------SGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 RL G +D + AV+ FQ H L G+V TL+ Sbjct: 229 RLAAIGNDQLVAADEGYYPTIELQAPEPRVYDEALVEAVRRFQRHHLLADDGVVGPRTLK 288 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 A+N+ V+ RI Q++ N+ R + LL + +VLV+I L R+ ++VG+ Sbjct: 289 ALNMSVERRIDQIRANMERARWLL-HGLPESFVLVDIAGYDLRYFRPNGDTWRARIVVGQ 347 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 R+TP L S I + NP W +P +I+++D++ +R+DP YL N+ ++ GK++ Sbjct: 348 PYRRTPSLRSEITHLTINPTWTVPPTIMREDVLPKVRRDPGYLATKNLSVLSPSGKQLDP 407 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 VDW+ P + RQ G N + + F + + Y+HDTP LF+ R +SGC Sbjct: 408 ASVDWS--NPGGVMLRQQAGPNNPLGQLVVRFPNDHLVYLHDTPSRGLFSRSQRALSSGC 465 Query: 344 VRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSII 403 +RV +++L L DT ++ ++ ++ KT V LA VPV Y + D + Sbjct: 466 IRVEGVLELAQLLFDDTG--TQANVRRLIADGKTRNVLLARHVPVVLHYWTVQPEPDGEL 523 Query: 404 QFRDDIYGLDNVHVGIIPL 422 FR DIY D+ + + Sbjct: 524 AFRPDIYDRDDALIEALDR 542 >gi|163746379|ref|ZP_02153737.1| peptidoglycan binding domain protein, putative [Oceanibulbus indolifex HEL-45] gi|161380264|gb|EDQ04675.1| peptidoglycan binding domain protein, putative [Oceanibulbus indolifex HEL-45] Length = 583 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 111/367 (30%), Positives = 186/367 (50%), Gaps = 11/367 (2%) Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRER 117 +P S E A ++ I + +LS+GGW P +P L G++ V LR R Sbjct: 211 SPAAYFRALPPRSLEYNALLKEKIVM-EKLLSQGGWGPSVPAGKLEPGDTGNDVIALRNR 269 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 LI G L+ S + +DA + AV+ FQ HGL+ G+ +T++ +N+ V+ R++ + Sbjct: 270 LIAMGYLERSNAVG--YDATLTDAVRQFQEAHGLNTDGVAGPATMKQINIGVEQRLQSVM 327 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG--RVDRQTPILHSRI 235 V L R + G R++LVNIP S + +++GK ++ +VG R DR TP + Sbjct: 328 VALERER-WFNTDRGKRHILVNIPDFSAKIIDDGKTTFQTRSVVGAAREDRPTPEFSDVM 386 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 ++ NP W +PRSI+ + + L+Q+ + +I + D G++V V+++ Sbjct: 387 EHMVVNPSWYVPRSIVTGEYLPQLKQNRNAVS--HIEITDRSGRKVNRGAVNFSKYTART 444 Query: 296 FIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 F F RQ P NA+ K F ++ N Y+HDTP LF+ VR + GCVR+ + Sbjct: 445 FPFSMRQPPSNTNALGLVKFMFPNKYNIYLHDTPAKSLFDRDVRAFSHGCVRLAEPFEFA 504 Query: 354 VWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 LL + V+++ + T + L +VPVH +Y +A + ++RDD+YG D Sbjct: 505 YALLAPQSADPEGDFQAVLRSGRETRIVLEEQVPVHLIYRTAVTNARGHTEYRDDVYGRD 564 Query: 414 NVHVGII 420 + + Sbjct: 565 ALIWNAL 571 >gi|24373464|ref|NP_717507.1| hypothetical protein SO_1899 [Shewanella oneidensis MR-1] gi|24347755|gb|AAN54951.1|AE015633_3 conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 571 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 112/435 (25%), Positives = 212/435 (48%), Gaps = 29/435 (6%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDI---------P 68 I+ + L+ ++ S+L + N + FD L +++ I + P Sbjct: 137 GIITYAIHLLNGKVNPSMLGKTWNYDEAHLD---FDTTLKQLEEHIKAHTVAEAINGLAP 193 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPS 127 I+ Q ++ +A Y+D+ +R + +P + G +S S++ + RL G LD + Sbjct: 194 KITP--YHQLKQYLAHYKDLAARYPFTTIPYTEVIKPGTTSPSIKGIAARLKEQGYLDAN 251 Query: 128 KGLSVA---------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 + A +D +E+A++ FQ H L G++ + T+ A+NVP R+ Q+++ Sbjct: 252 ATVQDATLVANAPLLYDNILEAAIRQFQADHSLKADGVIGAGTMAALNVPYAQRVEQIRI 311 Query: 179 NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 NL R + L + Y++VN+ L ++ + R+ +I+G++D +TP+ S++ + Sbjct: 312 NLERAR-WLSANLSANYLIVNLAGYELLLFKDNNLSWRTDIIIGKIDSKTPLFKSKLKYV 370 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI- 297 + NP W +P SI +++ R+DP YL + +++ G V +DW+S NF Sbjct: 371 VVNPTWTVPNSIST-EIINHQRKDPDYLHKKHFKVVESSGTPVDASGIDWHSMTRKNFPY 429 Query: 298 -FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 F Q+PG N++ K F ++ + Y+HDTP LF+ R + GC+RV++ + L L Sbjct: 430 WFVQEPGADNSLGLVKFIFPNQYSIYLHDTPSKNLFDKTDRAFSHGCIRVKDPLVLADKL 489 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 L WS + + KT + L + + +Y +A K+ I+F +D+Y D V Sbjct: 490 LSANANWSSETLNNKLAEGKTENLFLDEPLDILIMYWTATI-KNGKIKFYNDVYTRDPVL 548 Query: 417 VGIIPLPEDHPIDSD 431 + + P + +D Sbjct: 549 IEALNRPTYEGVLAD 563 >gi|325981933|ref|YP_004294335.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas sp. AL212] gi|325531452|gb|ADZ26173.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas sp. AL212] Length = 543 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 112/409 (27%), Positives = 201/409 (49%), Gaps = 18/409 (4%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IA 76 +L + L A+ D + F A ++ + +S +T Sbjct: 130 VLKLATDLSRGRFSATATDPDWHIPRADFDAVAFLQ-AAIYAGHLEDSLQKLSPQTLNYQ 188 Query: 77 QTEKAIAFYQDILSR-GGWPELPIRP-LHLGNSSVSVQRLRERLI----ISGDLDPS--K 128 ++ +A YQ +L W +P P L G++ S+ +R+R+ G L+ + Sbjct: 189 LLKRTLAHYQILLKNTPEWIRIPSSPSLRPGDTYPSIPLIRQRIAQAYAADGLLEFNLIP 248 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 + +D + +A+K FQ +HGL+ G++ +T+ A+N+P++ +IRQL++N+ R++ L Sbjct: 249 NANQLYDTELVAAIKAFQAQHGLNTDGIIGKNTINALNIPLEWKIRQLRINMERLR-WLP 307 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + +G R++LVN L A+EN + L +IVGR R TP + ++ ++ NPYW +P Sbjct: 308 RNLGQRHLLVNTAGFYLTAIENDEPVLNMRIIVGRDYRSTPSFNGTLSHMVLNPYWNVPA 367 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMI---DEKGKEVFVEEVDWNSPEPP-NFIFRQDPGK 304 SI +KD++ +QDP Y + + + + +DW+ + + RQDPG Sbjct: 368 SIARKDLLPKQQQDPTYFTTAGFKVYPAQERGAQAIDPGMIDWHELKQRFPYFLRQDPGT 427 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 NA+ K F + + Y+HDTP LF +R +SGC+R+ +L + L P+ Sbjct: 428 HNALGKIKFMFSNPFSIYLHDTPSKSLFRKDIRTFSSGCIRLEKPFELAAFALN-QPSLP 486 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +++ KT L +P++ VYI+AW+ + + F DIY D Sbjct: 487 -EKFSADLESDKTITTHLPKPLPIYLVYITAWADEHHKVYFYPDIYDRD 534 >gi|213160796|ref|ZP_03346506.1| hypothetical protein Salmoneentericaenterica_12358 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 397 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 111/377 (29%), Positives = 169/377 (44%), Gaps = 49/377 (12%) Query: 83 AFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLD---------------- 125 A + + WP+L L G S V LRE L +G LD Sbjct: 6 ALLKLVADSRPWPQLTNTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPGDNTSDSA 65 Query: 126 -------------------------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + A+D + AVK FQ GL G++ + Sbjct: 66 VVSPSAVVDETSVAQPVDEPTARRSKPAPAARAYDRELVEAVKRFQAWQGLGADGVIGPA 125 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T +N+ R L +N+ R++ L + ++VNIPA SL +NG L S VI Sbjct: 126 TRNWLNMTPAQRAGVLALNIQRLRLLPAEL--STGIMVNIPAYSLVYYQNGNQVLASRVI 183 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VGR DR+TP++ S +N ++ NP W +P ++ +KD++ + DP YL+ + ++ + Sbjct: 184 VGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSK 243 Query: 281 --VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + +VDW + P N FR Q PG N++ K S + Y+HDTP LF Sbjct: 244 EAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHNLFQRDA 303 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGCVRV +L LL+D W+ I +K T V + +PV+ Y++A+ Sbjct: 304 RALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNIRQNIPVNLYYLTAF 362 Query: 397 SPKDSIIQFRDDIYGLD 413 D +Q+R DIY D Sbjct: 363 VGADGRMQYRTDIYNYD 379 >gi|254487232|ref|ZP_05100437.1| peptidoglycan-binding domain 1 [Roseobacter sp. GAI101] gi|214044101|gb|EEB84739.1| peptidoglycan-binding domain 1 [Roseobacter sp. GAI101] Length = 516 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 117/374 (31%), Positives = 190/374 (50%), Gaps = 11/374 (2%) Query: 52 FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVS 110 +F+ M ++ + E A + + + +L+ GGW P + L G + Sbjct: 137 LTDFIKSDPMPFLRNLRPRTMEYNALMREKLEM-EKLLATGGWGPVVSASTLKPGAQGAA 195 Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V LR RLI G L + G+S +DA +E+AV+ FQ HGL+ G+ S T+ +N V+ Sbjct: 196 VVSLRNRLIRMGYLKRTNGIS--YDATMEAAVREFQKDHGLNTDGVAGSGTITELNKSVE 253 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG--RVDRQT 228 R++ + V + R + L ++ G R+VLVNIPA + ++NG+V + +VG + R T Sbjct: 254 TRLKSVIVAMERER-WLNKERGARHVLVNIPAFTAAIIDNGRVTFETKSVVGATKDGRYT 312 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P + I+ NP W +PRSI+ K+ + ++ +P +I +ID G+ V V++ Sbjct: 313 PEFSDTMEYIVINPTWNVPRSIVTKEYLPSMKNNPN--AAGHIDLIDRSGRIVPRGAVNF 370 Query: 289 NSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 +S F F RQ PG+ NA+ K F ++ N Y+HDTP LF +R + GCVR+ Sbjct: 371 SSYTEQTFPFSMRQRPGRSNALGLVKFIFPNKYNIYLHDTPSKSLFARDMRAFSHGCVRL 430 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 + D LL + + + T + T V L E+PVH +Y +A++ Q+R Sbjct: 431 ADPFDFAYTLLAAQTSDPVGFFKSKLATGRETFVHLDNELPVHLIYRTAFTTPRGHTQYR 490 Query: 407 DDIYGLDNVHVGII 420 DIYG D + Sbjct: 491 ADIYGRDAKIWNAL 504 >gi|126736346|ref|ZP_01752088.1| peptidoglycan binding domain protein, putative [Roseobacter sp. CCS2] gi|126714167|gb|EBA11036.1| peptidoglycan binding domain protein, putative [Roseobacter sp. CCS2] Length = 536 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 116/410 (28%), Positives = 182/410 (44%), Gaps = 14/410 (3%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPII--SKETIAQ 77 L + + S +D I+ V R A + + + S + Sbjct: 124 LDYARDIQTGLLTPSRIDSAIH--RQVPVRSRLSTMRAFAQSNPSAFMRALAPSAPEYTR 181 Query: 78 TEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 + ++ +GGW P +P R G+S V LR RLI G L + + +D Sbjct: 182 LMSEKMRMERLIGQGGWGPTVPGRKYERGDSGAGVVALRNRLIAMGYLPRTN--TQTYDD 239 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 + A+ FQ HGL G + TL+ +NV + R+R + V + R + + + G R+V Sbjct: 240 AIYGAITRFQQAHGLAIDGTAGAGTLDEINVQPEARLRSIIVAMERER-WINRPRGERHV 298 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQ--TPILHSRINRIMFNPYWVIPRSIIQKD 254 VNI + + +NG + +VG DR TP + ++ NP W +PRSII K+ Sbjct: 299 WVNITDFTAKIYDNGVETFSTRSVVGARDRDRVTPEFSDVMEFMVINPSWYVPRSIITKE 358 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI--FRQDPGKINAMASTK 312 + L+ +P + N+ + D G+ V D++ P NF FR+ P + NA+ K Sbjct: 359 FLPQLQANPNAV--RNLVITDRNGRVVDRSTADFSQYTPTNFPYSFREPPSQGNALGLVK 416 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F +R N Y+HDTP LF R + GCVR+ + D LL + + Sbjct: 417 FMFPNRYNIYLHDTPSKSLFGRETRAYSHGCVRLADPFDFAYALLARQVGNPEEVFQGHL 476 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 ++ + V L T VPVH VY +A P D +QFR D+YG D + Sbjct: 477 RSGRERRVDLETPVPVHLVYRTAIVPADGKVQFRRDVYGRDGRIWNALAR 526 >gi|83952122|ref|ZP_00960854.1| peptidoglycan binding protein, putative [Roseovarius nubinhibens ISM] gi|83837128|gb|EAP76425.1| peptidoglycan binding protein, putative [Roseovarius nubinhibens ISM] Length = 523 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 111/410 (27%), Positives = 199/410 (48%), Gaps = 14/410 (3%) Query: 18 LILPMGLSLVEKPIHASVLDEII--NESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI 75 +L + L + + +D I Y S V NF G +P + E Sbjct: 109 TMLLLARDLQTGMLVPAKVDREIVRQVPYRSRVAH-LTNFSTSNPRGFFRSLPPKNAEYS 167 Query: 76 AQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + + + ++ +GG+ PE+P + L G S +V +R RL+I G + S S + Sbjct: 168 RLLREKL-RLEALMLQGGFGPEVPAKSLKRGQSGPAVVAMRNRLVIMGFMPRSA--SQEY 224 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 DA + AV+ FQ HGL G ++T+ +N V+ R++ + V + R + + Q G R Sbjct: 225 DAKLAEAVQAFQAAHGLVADGDAGAATVAEINTSVETRLKSILVAMERER-WINQPRGDR 283 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVG--RVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +VLVN+ S V++ +V ++ ++G DR++P + + NP W +PRSI Sbjct: 284 HVLVNLTDFSARIVDHDEVTFQTRAVIGLNDSDRRSPEFSDVMEYMEINPTWNVPRSITV 343 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAS 310 K+ + ++++P ++ + + +G++V V++N+ F F +Q P NA+ Sbjct: 344 KEYLPQMQRNPN--AAGHLKLYNSRGQQVSRANVNFNAYTARTFPFALKQPPSNRNALGL 401 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F ++ N Y+HDTP LF R + GC+R+++ D LL + Sbjct: 402 VKFMFPNKYNIYLHDTPAKSLFQRNKRDFSHGCIRLQDPFDFAYALLARQEEDPKGFFHR 461 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 V+ T + T V+L +VPVH +Y +A++ +Q+R+D+YG D + Sbjct: 462 VLNTGQQTQVRLKKQVPVHIIYRTAFTQAKGPMQYRNDVYGRDARIWSAL 511 >gi|330830685|ref|YP_004393637.1| cell wall degradation protein [Aeromonas veronii B565] gi|328805821|gb|AEB51020.1| Cell wall degradation protein [Aeromonas veronii B565] Length = 494 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 127/374 (33%), Positives = 184/374 (49%), Gaps = 22/374 (5%) Query: 61 MGIDSDIPIISKE-------TIAQTEKAIAFYQDILSR----------GGWPELPIRPLH 103 + +D + P++++ + +A Y+ + ++ WP L + L Sbjct: 117 LKLDLNRPVVTQPSDDDLLTQVKSLRPQVAEYEAVRAKVHKLLAMPMASKWPTLDMPTLR 176 Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G SS + ++R L GD PS G +D E A+K FQ RHGL G++ T Sbjct: 177 AGESSAELGQIRAMLNELGDSAPSHG-DQIYDGDTEQAIKQFQRRHGLTADGIIGRQTRS 235 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 +N +R L NL R + L++Q G RYVLVNIP L VE+G S VIVG+ Sbjct: 236 WLNTGPQVRASLLLRNLWR-RDLVDQLAGGRYVLVNIPDYRLSVVESGNEVFTSRVIVGK 294 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 R TPIL S I I+ NP W +PRSI+ KD++ L +DP YL +ID +G V Sbjct: 295 EQRATPILASEIRSIVLNPSWHVPRSILSKDILPKLGRDPAYLSREQFEVIDSEGNPVQF 354 Query: 284 EEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 E W+ F + RQ PG NA+ K + + Y+H TP LF R +S Sbjct: 355 TEEGWHQALAAGFPYRLRQKPGDHNALGRYKFYLPNNDAIYLHSTPRKALFEQGARAFSS 414 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GC+RV + DL LL D+ + + ++K +T + L T +PV VY S+W ++ Sbjct: 415 GCIRVEHADDLAELLLADS-RYQPDKVANILKESQTKWLPLTTPIPVFTVYWSSWIDENG 473 Query: 402 IIQFRDDIYGLDNV 415 Q R+DIYG D V Sbjct: 474 RQQLRNDIYGFDRV 487 >gi|254454682|ref|ZP_05068119.1| hypothetical protein OA238_5313 [Octadecabacter antarcticus 238] gi|198269088|gb|EDY93358.1| hypothetical protein OA238_5313 [Octadecabacter antarcticus 238] Length = 535 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 106/371 (28%), Positives = 183/371 (49%), Gaps = 11/371 (2%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQR 113 FLA + +P S E + ++ + +L++GGW P + L +G S V+V Sbjct: 159 FLASTPASYLATLPPNSPEYARLLREKMSL-ERLLAQGGWGPAVSSGSLAVGASGVAVVA 217 Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 LR+RL+ G ++ S + +DA ++ AV+ FQ HGL G + TL +NVP R+ Sbjct: 218 LRDRLVAMGYMERSA--TQIYDATIQEAVQRFQQTHGLAEDGEAGAGTLTEINVPAASRL 275 Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPIL 231 +Q+ V + R + + + G R+V VN+ S ++N +V ++ ++G +RQTP Sbjct: 276 QQIIVAMERER-WMNRPRGERHVWVNLVDFSAAIMDNDRVTFQTRSVIGATGSNRQTPEF 334 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP 291 + ++ NP W +PRSI+ + + L+ + + +I + D G+ + V+++ Sbjct: 335 SDVMEYMVINPSWYVPRSIVVNEYLPALQSNRNAVS--HIEITDSNGRAINRSNVNFSQF 392 Query: 292 EPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 F + RQ P + NA+ K F ++ N Y+HDTP LF VR + GC+R+ + Sbjct: 393 NSRTFPYSMRQPPSRGNALGLVKFIFPNQYNIYLHDTPAKSLFGREVRAFSHGCIRLNDP 452 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 D LL + + T + T V L VPVH VY +A++ + FR D+ Sbjct: 453 FDFAYALLAAQEDDPEGVFQSHLDTGRETRVNLDEPVPVHLVYRTAFTHTTGQLNFRRDV 512 Query: 410 YGLDNVHVGII 420 Y D+ + Sbjct: 513 YDRDSRIWDAL 523 >gi|260575117|ref|ZP_05843118.1| Peptidoglycan-binding domain 1 protein [Rhodobacter sp. SW2] gi|259022739|gb|EEW26034.1| Peptidoglycan-binding domain 1 protein [Rhodobacter sp. SW2] Length = 531 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 111/409 (27%), Positives = 193/409 (47%), Gaps = 14/409 (3%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET--IA 76 +L L + S +D I V+DR N +A + + ++ Sbjct: 118 LLDYARDLQTGALVPSEIDPGIK--REVPVHDRHANLVAFETGNPVAFLRGLAPTATAYP 175 Query: 77 QTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 Q KA + ++ GGW +P L G +V LR+RLI G L + + +D Sbjct: 176 QLMKAKLDLEAQIASGGWGAAVPSGALKPGQDGPAVVALRDRLIRMGYLHRTA--TAIYD 233 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 A ++ AV+ FQ+ HGL G+ + T+E +N+ + R + + V + R + + G R+ Sbjct: 234 ADMQKAVQAFQLAHGLTADGVAGTGTIEQINIGPEARWQSVVVAMERER-WMNIDRGHRH 292 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 + VN+ + + +++GKV S ++G+ DR++P + ++ NP W +PRSI + Sbjct: 293 IWVNLTDFTAKIIDDGKVTFTSRSVIGKNAADRRSPEFSDMMEFMVINPSWSVPRSITTR 352 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAST 311 + + +++++P ++ +ID G+ V VD+ NF F RQ P NA+ Sbjct: 353 EYLPMMQRNPN--AAGHLKLIDRAGRVVSRASVDFTRYTAANFPFAMRQAPSSGNALGLV 410 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F + N Y+HDTP LF N VR + GC+R+ + D LL + E+ Sbjct: 411 KFMFPNPYNIYLHDTPSKSLFANEVRDFSHGCIRLGSPFDFAYALLARQTDDPKGLFEQH 470 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + + + LA VPVH VY +A+ + +R D+YG D + + Sbjct: 471 LNGGGESRLDLAAPVPVHLVYFTAFPGAKGQMNYRRDVYGRDALIFDAL 519 >gi|254462001|ref|ZP_05075417.1| peptidoglycan-binding domain 1 [Rhodobacterales bacterium HTCC2083] gi|206678590|gb|EDZ43077.1| peptidoglycan-binding domain 1 [Rhodobacteraceae bacterium HTCC2083] Length = 536 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 107/408 (26%), Positives = 189/408 (46%), Gaps = 10/408 (2%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 + L L + S +D I + + + A+ Sbjct: 122 IFLQYSRDLQTGVLTPSKVDREIVRQVPLRDRVSYLTNFTKSSPKRFFQVLAPKAPEYAR 181 Query: 78 TEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 K + L++GGW ++P + L G + +V LR RL + G L S S +DA Sbjct: 182 LMKTKLMMERQLAKGGWGQKVPQKSLKPGQTGNAVVILRNRLQVMGYLKRS--SSQTYDA 239 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 ++SA++ FQ+ GL+P G+ T+ +N P++ ++ + V + R + + + G R++ Sbjct: 240 AMQSAMQQFQLSRGLNPDGIAGPGTMAEINRPIESHLQAIMVAMERER-WMNRPRGKRHI 298 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 VN+ S ++NGK RS ++G+ DR++P + ++ NP W +PRSI K+ Sbjct: 299 WVNLTDFSATIIDNGKESFRSRSVIGKNQRDRRSPEFSDVMEFLVVNPTWNVPRSIATKE 358 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTK 312 + LL+++P + ++ ++D +G+ V ++ F F +Q P NA+ K Sbjct: 359 YLPLLKKNPNAV--GHLRIVDSRGRTVSRSAANFGEYSAKTFPFSIKQPPSNSNALGLVK 416 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F +R+N Y+HDTP LF+ VR + GC+R+ + LL + + + + Sbjct: 417 FMFPNRHNIYLHDTPAKNLFSREVRAYSHGCIRLHQPFEFAYALLAKQTSDPKGFFQSKL 476 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 T T V L VPVH VY +A+ + +R DIYG D + Sbjct: 477 STGTETQVNLNAPVPVHIVYRTAFVTANGTANYRRDIYGRDAKIFAAL 524 >gi|307825667|ref|ZP_07655884.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] gi|307733244|gb|EFO04104.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] Length = 574 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 125/439 (28%), Positives = 212/439 (48%), Gaps = 43/439 (9%) Query: 24 LSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ------ 77 L+L + + S+L +++ ++ VN + NF ++ D+P++ K+++AQ Sbjct: 123 LALYDTALSISLL-RFLHDLHYGRVNPQGINFNLKLREKKLIDLPLLIKDSLAQNNLAQL 181 Query: 78 -------------TEKAIAFYQDILSRGGWPELPIR-----PLHLGNSSVSVQRLRERLI 119 ++A+A Y+ + + +P + LH G S + LR L Sbjct: 182 PLSLEPQFKQYQKLKQALANYRQLAAI----AVPFKLDVKETLHPGESHPQIAELRRFLT 237 Query: 120 ISGDLDP-----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 GDL S S + + + VK FQ RHGL G + ++ A+NVP++ R+ Sbjct: 238 TVGDLPDDKTVISAEKSSLYTDAIVTGVKAFQKRHGLTADGNIGKGSVAALNVPLNYRVT 297 Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN----GKVGLRSTVIVGRV-DRQTP 229 QL++ + R++ L E +G ++VNIPA L A ++ + V+VG QTP Sbjct: 298 QLELAMERLRWLPELNVGAS-IIVNIPAFQLWAFDSIDQPDANIVNMRVVVGNALKTQTP 356 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH---MIDEKGKEVFVEEV 286 +L + ++ I F PYW +P SII+ +++ L Q+ YL N+ + + K + + Sbjct: 357 VLMAEMHFIDFMPYWNVPYSIIKNEILPKLIQNSNYLDKENMEMVSVFRDGEKPTALNQE 416 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 N + RQ PG NA+ K F ++++ Y+HDTP LF+ R + GCVRV Sbjct: 417 TMNLLKEGKLRIRQRPGGKNALGKVKFIFPNKDDVYLHDTPANALFSKSRRDFSHGCVRV 476 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 N L + LK+ W+ I+ + T K V L +PV F Y +A+ + ++F Sbjct: 477 ANPQKLAEFALKNQDNWNAETIQLAMNTPKMQRVILKKPIPVLFFYTTAFFDQYDNLEFY 536 Query: 407 DDIYGLDNVHVGIIPLPED 425 DIYG D V +G + P+D Sbjct: 537 PDIYGHDAVLLGALSKPDD 555 >gi|317047572|ref|YP_004115220.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. At-9b] gi|316949189|gb|ADU68664.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. At-9b] Length = 602 Score = 406 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 124/481 (25%), Positives = 195/481 (40%), Gaps = 94/481 (19%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ LY Y + ++ +IN+ +++ Sbjct: 132 MLGYLQFVSNVPTQGETWLYSNVPYKMAMPTVA-------------VINQWQNAVNGGGS 178 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSV 111 F+ ++ A A+ + WP+L L G S V Sbjct: 179 RAFVLSLEPQ---------HPQYAPMHAALKTL--LNDNRPWPQLRDSGTLKPGQISNDV 227 Query: 112 QRLRERLIISGDLD---------------------------------------------- 125 LRE L +G L Sbjct: 228 PALREILQRTGMLSGHSATPTPADDAVPVAPVPVSQSAQPVAVSPSAASVNDLSAQAPQA 287 Query: 126 -------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 P + + +D + VK FQ GL G + T E +NV +R L + Sbjct: 288 PGNVAANPVQSANNVYDNALVEGVKRFQHWQGLADDGAIGPRTREWLNVSPQMRAALLAL 347 Query: 179 NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 N+ R++ LL M ++VNIP SL NG L S VIVGR DR+TP++ S +N + Sbjct: 348 NIQRLR-LLPDDMH-NGIMVNIPNYSLTYYNNGATILSSRVIVGRPDRKTPLMRSALNNV 405 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPN 295 + NP W +P S++++D++ ++QDP YL + ++ + + +DWN + Sbjct: 406 VLNPPWNVPTSLVRQDIVPKVKQDPGYLYKHGYTLLSGWSADAQVIDPSSLDWNMVSAAS 465 Query: 296 FIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 F + RQ PG +N++ K S + Y+HDTP LF +R +SGCVRV +L Sbjct: 466 FPYRIRQAPGAMNSLGRYKFNMPSSDAIYLHDTPNHNLFQRDIRALSSGCVRVNKASELA 525 Query: 354 VWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 LL+D W+ I + +K T V + +PV+ Y++AW D Q+R DIY D Sbjct: 526 DLLLQDA-GWNDSRISDTLKEGNTRYVPIRHRIPVNLYYLTAWVADDGQPQYRTDIYNYD 584 Query: 414 N 414 N Sbjct: 585 N 585 >gi|170750306|ref|YP_001756566.1| peptidoglycan binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170656828|gb|ACB25883.1| Peptidoglycan-binding domain 1 protein [Methylobacterium radiotolerans JCM 2831] Length = 595 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 130/359 (36%), Positives = 191/359 (53%), Gaps = 11/359 (3%) Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELP--IRPLHLGNSSVSVQRLRERLIISGDLD 125 P ++ T T +A Y GGW LP + L G ++ LR L ++GDL Sbjct: 159 PTLTSRTFLDTLRAAERYAAFAEAGGWERLPEDLARLKPGERHPAIPALRHHLTLTGDLP 218 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + D + +A+ FQ RHGL SG++ T+ A+NVP +R RQL + R+ Sbjct: 219 ADAPPNDRLDPPLVAAIAAFQARHGLPDSGVLGRLTINALNVPAAVRQRQLAASAARLMG 278 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 + G RYV+VNIP+A++EAVENG V R +VG D+ TP + +RI I FNP W Sbjct: 279 -SKFPFGERYVVVNIPSAAVEAVENGAVARRYVAVVGSPDKATPPVETRITDINFNPTWT 337 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 +P S+++ +++ +R++P YL N+I ++ G EV +DW + N+ RQDPG Sbjct: 338 VPASVVKNEIIPQMRRNPGYLAKNHIRILSPSG-EVDPTRIDWAGEKAVNYTLRQDPGFD 396 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT--- 362 N++ +I+ +R YMHDTP LF VRF + GCVRV + +L WLL+ T Sbjct: 397 NSLGQVRIDMPNRFAVYMHDTPAKSLFAASVRFHSHGCVRVGQVKELVGWLLQGTDGPNG 456 Query: 363 ----WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 W IE + + +KLA +PV FVY++ ++ D FRDDIY LD Sbjct: 457 PGTSWGPIEIETGIADGERRDIKLAKPIPVTFVYLTGYATPDGKAHFRDDIYNLDTPAA 515 >gi|117920121|ref|YP_869313.1| peptidoglycan binding domain-containing protein [Shewanella sp. ANA-3] gi|117612453|gb|ABK47907.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. ANA-3] Length = 560 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 113/432 (26%), Positives = 210/432 (48%), Gaps = 24/432 (5%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDI-------PII 70 I+ + L+ ++ S+L + N + FD L +++ I + Sbjct: 127 GIITYAIHLLNGKVNPSMLGKTWNYDETHLD---FDTTLKQLEEHIKAHTVADAIAGLAP 183 Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 E Q ++ +A Y+D+ +R + +P + G++S SVQ + RL G L S Sbjct: 184 KIEPYHQLKQYLAQYKDLAARYPFSPIPYTEVIKPGSTSPSVQGIATRLTELGYLAASAP 243 Query: 130 LSV--------AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 +D+ +E+AV+ FQ H L G++ + T+ A+NVP + Q+++NL Sbjct: 244 ADNSAAVNQPLTYDSTLEAAVRQFQTDHSLKADGVIGAGTMAALNVPYSQLVDQIRINLE 303 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + L + Y++VN+ L ++ + R+ +I+G+++ +TP+ S++ ++ N Sbjct: 304 RAR-WLSANLPTNYLIVNLAGYELLLFKDNSLSWRTDIIIGKINAKTPLFKSKLKYVVVN 362 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI--FR 299 P W +PRSI +++ LR++P YL+ + +++ G V +DW+S NF F Sbjct: 363 PTWTVPRSIST-EIINHLRKEPDYLQKKHFKVVEGSGTPVDASGIDWHSMTRKNFPYWFV 421 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 QDPG+ N++ K F ++ + Y+HDTP LF R + GC+RV++ + L LL Sbjct: 422 QDPGEDNSLGLVKFIFPNQYSIYLHDTPAKSLFEQTDRAFSHGCIRVKDPLVLADKLLSA 481 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGI 419 WS + + KT + L + + +Y + KD I+F +D+Y D V + Sbjct: 482 NANWSSSTLSSKLSEGKTENLFLDEPLDILIMYWTVTL-KDGKIKFYNDVYKRDPVLIEA 540 Query: 420 IPLPEDHPIDSD 431 + P + +D Sbjct: 541 LNRPTYEGVLAD 552 >gi|22126641|ref|NP_670064.1| hypothetical protein y2763 [Yersinia pestis KIM 10] gi|45441013|ref|NP_992552.1| hypothetical protein YP_1186 [Yersinia pestis biovar Microtus str. 91001] gi|51595771|ref|YP_069962.1| hypothetical protein YPTB1431 [Yersinia pseudotuberculosis IP 32953] gi|108806698|ref|YP_650614.1| hypothetical protein YPA_0701 [Yersinia pestis Antiqua] gi|108812731|ref|YP_648498.1| hypothetical protein YPN_2570 [Yersinia pestis Nepal516] gi|149366664|ref|ZP_01888698.1| putative exported protein [Yersinia pestis CA88-4125] gi|167470672|ref|ZP_02335376.1| hypothetical protein YpesF_22997 [Yersinia pestis FV-1] gi|170024879|ref|YP_001721384.1| hypothetical protein YPK_2654 [Yersinia pseudotuberculosis YPIII] gi|186894850|ref|YP_001871962.1| hypothetical protein YPTS_1533 [Yersinia pseudotuberculosis PB1/+] gi|218928555|ref|YP_002346430.1| hypothetical protein YPO1407 [Yersinia pestis CO92] gi|229841379|ref|ZP_04461538.1| predicted carboxypeptidase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843484|ref|ZP_04463630.1| predicted carboxypeptidase [Yersinia pestis biovar Orientalis str. India 195] gi|229895858|ref|ZP_04511028.1| predicted carboxypeptidase [Yersinia pestis Pestoides A] gi|229903136|ref|ZP_04518249.1| predicted carboxypeptidase [Yersinia pestis Nepal516] gi|284988613|ref|YP_001401528.2| hypothetical protein YpsIP31758_2563 [Yersinia pseudotuberculosis IP 31758] gi|21959653|gb|AAM86315.1|AE013879_5 putative amidase [Yersinia pestis KIM 10] gi|45435872|gb|AAS61429.1| putative exported protein [Yersinia pestis biovar Microtus str. 91001] gi|51589053|emb|CAH20671.1| putative exported protein [Yersinia pseudotuberculosis IP 32953] gi|108776379|gb|ABG18898.1| hypothetical protein YPN_2570 [Yersinia pestis Nepal516] gi|108778611|gb|ABG12669.1| hypothetical protein YPA_0701 [Yersinia pestis Antiqua] gi|115347166|emb|CAL20059.1| putative exported protein [Yersinia pestis CO92] gi|149291038|gb|EDM41113.1| putative exported protein [Yersinia pestis CA88-4125] gi|169751413|gb|ACA68931.1| Peptidoglycan-binding domain 1 protein [Yersinia pseudotuberculosis YPIII] gi|186697876|gb|ACC88505.1| Peptidoglycan-binding domain 1 protein [Yersinia pseudotuberculosis PB1/+] gi|229678906|gb|EEO75009.1| predicted carboxypeptidase [Yersinia pestis Nepal516] gi|229689831|gb|EEO81892.1| predicted carboxypeptidase [Yersinia pestis biovar Orientalis str. India 195] gi|229697745|gb|EEO87792.1| predicted carboxypeptidase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700781|gb|EEO88810.1| predicted carboxypeptidase [Yersinia pestis Pestoides A] gi|320015731|gb|ADV99302.1| putative carboxypeptidase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 618 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 123/470 (26%), Positives = 197/470 (41%), Gaps = 60/470 (12%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHS---IVN 49 M+GYL + LY Y + +++ ++E SY + + Sbjct: 138 MLGYLHFISGVGANGSVWLYSNVPYKMAMPPAAVLN--AWQKAVNEGSTASYLASLAPQH 195 Query: 50 DRFDNFLARVDMGIDSDIPIISKETIAQTEKA-----IAFYQDILSRGGW--PELPIR-P 101 ++D + + + P T I ++IL R G P P++ P Sbjct: 196 PQYDKMQQALKLMLADRRPWPQMPTGPSLRPGQLSDDIPALREILDRTGMLHPTTPVKAP 255 Query: 102 LHLGNSSVSVQRLRERLII-----------------------SGDLDPSKG--------L 130 + + +V + + L + S D P+ Sbjct: 256 EVIPVENPTVAVVNDDLSVDEEKNRTQTNSLVVSPSAVSVPESDDAAPAPMPPVSVVTLT 315 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + + AVK FQ GL G++ T E +NV R L +N+ R++ L Sbjct: 316 DNIYTPELVEAVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGHV 375 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VNIP SL ++G L S VIVGR R+TP++ S +N ++ NP W +P S+ Sbjct: 376 --DNGIMVNIPNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSL 433 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQDPGKI 305 +++D++ R D Y + N ++ + + +DW+ P NF + RQ PG Sbjct: 434 VRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPYRLRQAPGAN 493 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D W+ Sbjct: 494 NSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWND 552 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + VK TT V + VPV Y++AW +D QFR DIY D + Sbjct: 553 ARVSSKVKQGDTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYDKM 602 >gi|117619072|ref|YP_855763.1| cell wall degradation protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560479|gb|ABK37427.1| cell wall degradation protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 433 Score = 404 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 126/395 (31%), Positives = 180/395 (45%), Gaps = 14/395 (3%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 + LV + ++ + H D + ++ + + + Sbjct: 44 AMDLVSREQMQTLKLNLNKPLAHEPAGDNLLEQVRQLRPQVA---------EYDAVREEV 94 Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 + WP L + L G S + ++R L GD P + +DA AV Sbjct: 95 RKLLALPMAKKWPTLTMPTLRAGEVSPELGQIRSILNELGDTAP-RHDDATYDAETLQAV 153 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 K FQ RHGL G++ T +N ++R L NL R + L++Q G RYVLVNIP Sbjct: 154 KQFQRRHGLTADGIIGRQTRSWLNTGPEVRASLLLRNLWR-RDLVDQLSGARYVLVNIPD 212 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 L VE+G S VIVG+ R TPIL S I I+ NP W +PRSI+ KD++ L +D Sbjct: 213 YRLSVVESGNEVFTSRVIVGKEQRATPILASEIRSIVLNPAWHVPRSILSKDILPKLGRD 272 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 P YL +ID +G V E W F + RQ PG NA+ K + Sbjct: 273 PAYLNREQFEVIDGEGNPVQFTEEGWQQALASGFPYRLRQKPGDHNALGRYKFYLPNNEA 332 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+H TP LF R +SGC+RV + DL LL D+ + + ++K +T + Sbjct: 333 IYLHSTPRKALFEQGARAFSSGCIRVEHADDLAELLLADS-RYQPDKVASILKETQTKWL 391 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 L T +PV VY S+W +D Q R+DIYG D V Sbjct: 392 PLTTPIPVFTVYWSSWIDEDGRQQLRNDIYGFDRV 426 >gi|145298228|ref|YP_001141069.1| hypothetical protein ASA_1213 [Aeromonas salmonicida subsp. salmonicida A449] gi|142851000|gb|ABO89321.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 494 Score = 404 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 122/395 (30%), Positives = 181/395 (45%), Gaps = 14/395 (3%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 + LV + ++ + H V D + + ++ + + + Sbjct: 105 AMDLVAREQMQTLKLNLNQPLAHEPVGDNLLDQVKQLRPQVA---------EYESVREEV 155 Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 + WP L + L G +S + ++R L GD + +D + A+ Sbjct: 156 RKLLAMPMAKQWPTLTMPTLRAGEASPELGQIRTILNELGD-GAPRHDDATYDVDTQQAI 214 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 K FQ RHGL G++ T +N +R L NL R + L++ G RYVLVNIP Sbjct: 215 KQFQRRHGLTADGIIGRQTRTWLNTGPQVRASLLLRNLWR-RDLVDHLSGARYVLVNIPD 273 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 L VE+G S VIVG+ R TPIL S I I+ NP W +PRSI+ KD++ L +D Sbjct: 274 YRLSVVESGNEVFTSRVIVGKEQRATPILASEIRSIVLNPPWHVPRSILSKDILPKLGRD 333 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 P YL +ID +G V E W F + RQ PG NA+ K + + Sbjct: 334 PAYLNREQFEVIDGEGNPVQFTEEGWYQALAAGFPYRLRQKPGDHNALGRYKFYLPNNDA 393 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 Y+H TP LF R +SGC+RV + DL LL D+ + + ++K +T + Sbjct: 394 IYLHSTPRKALFEQGARAFSSGCIRVEHADDLAELLLADS-RYQPDKVASILKNTQTKWL 452 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 L T +PV VY S+W ++ Q R+DIYG D V Sbjct: 453 PLTTPIPVFTVYWSSWIDEEGRQQLRNDIYGFDRV 487 >gi|238792383|ref|ZP_04636017.1| Peptidoglycan-binding domain 1 protein [Yersinia intermedia ATCC 29909] gi|238728309|gb|EEQ19829.1| Peptidoglycan-binding domain 1 protein [Yersinia intermedia ATCC 29909] Length = 603 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 125/489 (25%), Positives = 196/489 (40%), Gaps = 68/489 (13%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHS---IVN 49 M+GYL + LY Y + +++ + + E Y + + Sbjct: 116 MLGYLHFISGVGANGSVWLYSNVPYKMAMPPATILNR--WQQAVREGTTAPYLASLAPQH 173 Query: 50 DRFDNFLARVDMGIDSDIPIISKETIAQTEKA-----IAFYQDILSRGG-WPELPIRPLH 103 ++D + + + P I + IL R G + +P Sbjct: 174 PQYDKMHQALKLMLADRQPWPQMSNGPSLRPGQLSDDIPALRKILDRTGMLHPVASQPAK 233 Query: 104 ----LGNSSVSVQ--------------RLRERLII---------------SGDLDPSKG- 129 + + SV L L++ +GD+ Sbjct: 234 APEVIPVDNPSVAVVNDDLSVDEEKSRALAHSLVVSPSAAPVADASVAGATGDVAAPSSA 293 Query: 130 ------LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 + + AVK FQ HGL G++ T E +NV R L +N+ R+ Sbjct: 294 PLTVTITDNIYTPELVEAVKRFQQWHGLSDDGVIGVRTREWLNVSPQTRATLLALNIQRL 353 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L + ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP Sbjct: 354 RILPGRV--DNGIMVNIPNYSLNYYKNGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPP 411 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF-- 298 W +P S++++D++ R D Y + + ++ E V +DW+ P NF + Sbjct: 412 WNVPTSLVRQDIVPKARYDAGYFQRHGYTVLSGWSNEAEVVDPSMIDWSMISPNNFPYRL 471 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 RQ PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+ Sbjct: 472 RQAPGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQ 531 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-VHV 417 D W+ + +K TT V + VPV Y++AW D QFR DIY D V Sbjct: 532 DA-GWNDARVSSTLKQGDTTYVNIRQRVPVQLYYLTAWVADDGKPQFRTDIYNYDKTVRS 590 Query: 418 GIIPLPEDH 426 G P+ Sbjct: 591 GAQISPQAE 599 >gi|84503420|ref|ZP_01001480.1| peptidoglycan binding protein, putative [Oceanicola batsensis HTCC2597] gi|84388207|gb|EAQ01159.1| peptidoglycan binding protein, putative [Oceanicola batsensis HTCC2597] Length = 539 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 102/410 (24%), Positives = 190/410 (46%), Gaps = 10/410 (2%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 L L + + + S +D I + + D + + Sbjct: 125 LFLRYAVDVQTGVLKPSDVDSGIVRKVPLRDRRGYLEGITSADPAAFVASLPPQRLEYTR 184 Query: 78 TEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 + + +++ GG+ + + L G++ +V LR RL+ G L + + V +D Sbjct: 185 LMREKLRLERLIASGGFGATVQAQSLEPGDTGEAVVALRNRLMTMGYLP--RRVGVTYDR 242 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 +ESAV FQ HGL G+ ++T+ +NVPV+ R++ + V + R + + + +G R+V Sbjct: 243 DMESAVLRFQADHGLSEDGVAGTATIAEINVPVEERLKSVIVAMERER-WINRDLGDRHV 301 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 LVN+ +ENGK+ ++ ++G+ +TP + ++ NP W +PRSI + Sbjct: 302 LVNLTDFHARIMENGKIYFKTRSVIGKNLSTHRTPEFSDVMEHMIVNPTWNVPRSIAVSE 361 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTK 312 + +++P ++++ +ID +G+ V V++ + NF F +Q P NA+ K Sbjct: 362 YLPAFKRNPY--SNSHLKLIDARGRVVDRGSVNFAAYSKRNFPFDLKQPPSSRNALGLVK 419 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F + +N Y+HDTP LF+ VR + GC+R+ + LL + Sbjct: 420 FMFPNVHNIYLHDTPAKSLFSRDVRAFSHGCIRLNEPFEFAHALLAWQSDDPEGLFRSTL 479 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 T + T + LA+ +PVH +Y +A S + +R D+YG D + Sbjct: 480 NTGRETKIDLASPLPVHLIYRTAMSQPKGQMSYRRDVYGRDGRIWEALAR 529 >gi|323138298|ref|ZP_08073369.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322396381|gb|EFX98911.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 387 Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 124/358 (34%), Positives = 200/358 (55%), Gaps = 5/358 (1%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGD 123 D P++ ET T KA Y I+ GGWP++ + L G+ +V LR RL D Sbjct: 32 DDPAPVLQPETFFTTSKASERYAQIVDLGGWPKVGV-SLRPGSKGPAVSTLRRRLAAEDD 90 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 + ++D + AVK FQ R GL +G+V +TL A++VP +R RQL + R+ Sbjct: 91 -AVTDTNKQSWDPALTEAVKRFQFRMGLKQTGVVAGATLRALDVPATVRFRQLASSAQRL 149 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 ++ G RY++VNIP+ +++AV+N +V R IVG + +P + +++ + NP Sbjct: 150 AG-VDFPFGPRYIVVNIPSTAVDAVDNDRVVRRYAAIVGDPEHHSPEVQAKVVAVNINPT 208 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W +P SII+ ++ + +DP YL + I +++ +G+EV ++W S N+ RQD G Sbjct: 209 WTVPTSIIKNEIAPKMLKDPSYLTRSRIRVLNGRGEEVDPRSINWASERAVNYTLRQDSG 268 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL--KDTP 361 N++ S +I + ++ YMHDTP LF + RF + GCVRV+ ++DL WLL + P Sbjct: 269 AHNSLGSIRISMPNPHSVYMHDTPSRNLFASDYRFLSHGCVRVQGVVDLAAWLLDGSNGP 328 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGI 419 S+ I + + + V+L+ VPV +VY++ W+ D I+ FRDD+Y LD V Sbjct: 329 QLSKEQINAKIASGEREEVRLSHPVPVVWVYMTGWASADGIVHFRDDVYHLDEVGGAA 386 >gi|212709809|ref|ZP_03317937.1| hypothetical protein PROVALCAL_00857 [Providencia alcalifaciens DSM 30120] gi|212687620|gb|EEB47148.1| hypothetical protein PROVALCAL_00857 [Providencia alcalifaciens DSM 30120] Length = 575 Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 123/445 (27%), Positives = 189/445 (42%), Gaps = 57/445 (12%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ LY Y I+ P I + R Sbjct: 140 MLGYLQYLSSVESSGQYWLYTSRPYKIIA--------PTTPQ-----IKPWLDAASEHRL 186 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQ 112 ++ P+ + K +A +D L + L G +S V Sbjct: 187 GEWVKAQAPKHAMYQPMR-----KEMLKQLALPEDTLEIT-----STKTLKPGQASDDVI 236 Query: 113 RLRERLIISGDLDPSKGLSVA------------------FDAYVESAVKLFQMRHGLDPS 154 LRE L+ G L+ S + + AVK FQ+++GL+ Sbjct: 237 TLREILVRDGLLEASAVSETVDASAPPEEINKVTANARVYSDDLVEAVKKFQLQYGLEAD 296 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G++ T +N+ + + +N+ R++ + E +LVNIPA +L+ N + Sbjct: 297 GVIGKGTRVWLNMQPKQKAGLMALNIQRLRIVPESS--GTGILVNIPAYTLDFYLNNDII 354 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 L S VIVGR DR+TPI+ S +N ++ NP W +P S+ +KD+ + DP Y + Sbjct: 355 LDSKVIVGRADRKTPIMSSALNNVVINPPWSVPTSLARKDIAPKGKMDPSYFSRKGYTVY 414 Query: 275 DEKGK---EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 G+ E+ +DW + P NF + RQ PG N++ K S + Y+HDTP Sbjct: 415 SGWGQDAYEIDPYTIDWENITPANFPYHIRQAPGSSNSLGRYKFNMPSSDAIYLHDTPNH 474 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LFN R +SGCVRV +L LL D W++ I+ +K T V + +PV+ Sbjct: 475 SLFNKNARAISSGCVRVNKASELATILLGDA-GWAQTRIDGALKEGSTRYVNIPDRIPVY 533 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDN 414 Y +AW KD Q+R DIY D Sbjct: 534 LYYQTAWVDKDQQPQYRADIYQYDG 558 >gi|145599560|ref|YP_001163636.1| hypothetical protein YPDSF_2288 [Yersinia pestis Pestoides F] gi|145211256|gb|ABP40663.1| hypothetical protein YPDSF_2288 [Yersinia pestis Pestoides F] Length = 618 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 123/470 (26%), Positives = 197/470 (41%), Gaps = 60/470 (12%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHS---IVN 49 M+GYL + LY Y + +++ ++E SY + + Sbjct: 138 MLGYLHFISGVGANGSVWLYSNVPYKMAMPPAAVLN--AWQKAVNEGSTASYLASLAPQH 195 Query: 50 DRFDNFLARVDMGIDSDIPIISKETIAQTEKA-----IAFYQDILSRGGW--PELPIR-P 101 ++D + + + P T I ++IL R G P P++ P Sbjct: 196 PQYDKMQQALKLMLADRRPWPQMPTGPSLRPGQLSDDIPALREILDRTGMLHPTTPVKAP 255 Query: 102 LHLGNSSVSVQRLRERLII-----------------------SGDLDPSKG--------L 130 + + +V + + L + S D P+ Sbjct: 256 EVIPVENPTVAVVNDDLSVDEEKNRTQTNSLVVSPSAVSVPESDDAAPAPMPPVSVVTLT 315 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + + AVK FQ GL G++ T E +NV R L +N+ R++ L Sbjct: 316 DNIYTPELVEAVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGHV 375 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VNIP SL ++G L S VIVGR R+TP++ S +N ++ NP W +P S+ Sbjct: 376 --DNGIMVNIPNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSL 433 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQDPGKI 305 +++D++ R D Y + N ++ + + +DW+ P NF + RQ PG Sbjct: 434 VRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPYRLRQAPGAN 493 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D W+ Sbjct: 494 NSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWND 552 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + VK TT V + VPV Y++AW +D QFR DIY D + Sbjct: 553 ALVSSKVKQGDTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYDKM 602 >gi|269961715|ref|ZP_06176076.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833580|gb|EEZ87678.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 530 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 105/419 (25%), Positives = 183/419 (43%), Gaps = 38/419 (9%) Query: 6 KINKILYCFFVYLILPM----GLSLVEKPIHASVLDEIINESYHSI-VNDRFDNFLARVD 60 + L+ + P LSL+ I LDE +NE + +++ F+ A + Sbjct: 138 EGINWLFANKGNVSFPAPSIETLSLLSNEITVGKLDEFLNELRSPLQMDESFNTAYASLS 197 Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 + P+ ++ + +A +G+ + R+ I Sbjct: 198 TYAKFEFPLYQQD------QRLAR-------------------VGDELFDKASMIARMQI 232 Query: 121 SG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 G D+ + +D +E AV FQ HGL G++ +T+ +N R+ L +N Sbjct: 233 VGVDVGHLDTETTLYDENLELAVMEFQRIHGLKQDGIIGPNTIRWINFSPQQRLHSLALN 292 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R + +++ V VN+P + +G+ S V+VG+ R+TPI+ ++ ++ Sbjct: 293 AERSRIWAKER--DNVVFVNVPGYEVTYWHDGQPLFESKVVVGKASRKTPIMTGTLDSVI 350 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFI 297 NP W +P I+ KD++ ++++P YL +NI +I + ++W + P F Sbjct: 351 LNPTWNVPWKIMVKDIIPKVKRNPMYLMQHNIQIIRSWTSREIIDPTTINWATVNPRTFP 410 Query: 298 FR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 +R Q G NA+ K + Y+HDTP LFN R +SGCVRV + L Sbjct: 411 YRMRQSSGSHNALGLYKFNMPNPQAIYLHDTPSKNLFNQDRRAFSSGCVRVEHADQLAEL 470 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 L K R + R T V L+ + VH +Y +AW ++ + +RDDIY D+ Sbjct: 471 LFKTQGLEERLAKKRQNGRRSNTSVPLSERIQVHIIYQTAWL-EEGTLYYRDDIYQYDD 528 >gi|308186271|ref|YP_003930402.1| hypothetical protein Pvag_0751 [Pantoea vagans C9-1] gi|308056781|gb|ADO08953.1| Uncharacterized protein ycbB [Pantoea vagans C9-1] Length = 603 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 124/484 (25%), Positives = 195/484 (40%), Gaps = 95/484 (19%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ LY Y + ++ ++N+ +++ Sbjct: 132 MLGYLQFVSNVPTQGETWLYSNVPYRLTQPSVA-------------VVNQWQNAVNAGSA 178 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSV 111 D F+A + A+ + + WP+L L G S V Sbjct: 179 DTFIASLQPQ---------HPQYQLMHVALKAL--LSDKQPWPQLKSSETLRPGQVSDDV 227 Query: 112 QRLRERLIISG-------------DLDPSKGLS--------------------------- 131 LRE L SG D P+ + Sbjct: 228 PALREILQRSGMLTAQVNAPAPDDDAVPAAPVPVSHSDQPVAVSPSAAPVTNLLTPSPQS 287 Query: 132 --------------VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 +D + + VK FQ GLD G + + T + +NV +R L Sbjct: 288 PGNIQTSTLEGNTANVYDETLVAGVKRFQQWQGLDGDGAIGTRTRQWLNVSPQMRASLLA 347 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 +N+ R++ LL M ++VNI SL NG L S VIVGR DR+TP++ S +N Sbjct: 348 LNIQRLR-LLPDDMH-NGIMVNIANYSLIYYNNGNKILSSRVIVGRPDRKTPLMRSALNN 405 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPP 294 ++ NP W +P ++++KD++ ++QDP YL + ++ + + +DW Sbjct: 406 VVLNPPWNVPTTLVRKDIIPKVKQDPTYLYKHGYTLLSGWSADAEVIDPSMIDWRMVSAA 465 Query: 295 NFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 +F +R Q PG NA+ K S + Y+HDTP LF +R +SGCVRV +L Sbjct: 466 SFPYRMIQAPGVANALGRYKFNMPSSDAIYLHDTPNHNLFQRDIRALSSGCVRVNKASEL 525 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LL+D W+ I +K T V + +PV+ Y++AW D QFR DIY Sbjct: 526 AGLLLQDA-GWNDSRISSTLKEGDTRYVPIRHRIPVNLYYLTAWVADDGKPQFRTDIYNY 584 Query: 413 DNVH 416 D+ Sbjct: 585 DDTA 588 >gi|261344276|ref|ZP_05971920.1| putative peptidoglycan binding domain protein [Providencia rustigianii DSM 4541] gi|282567879|gb|EFB73414.1| putative peptidoglycan binding domain protein [Providencia rustigianii DSM 4541] Length = 575 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 109/340 (32%), Positives = 166/340 (48%), Gaps = 26/340 (7%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPS------------------KGLSVAFDAYVE 139 + L G +S V LRE L+ G LD S + ++ + Sbjct: 222 STKALKPGQASDDVITLREILVRDGLLDASVIGEAIDASAPPEEIAKVTANARVYNDELV 281 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 AVK FQ+++GL+ G++ T +N+ + + +N+ R++ + E +LVN Sbjct: 282 EAVKKFQLQYGLEADGVIGRGTRVWLNMQPKQKAGLMALNIQRLRIVPESS--GTGILVN 339 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IPA +L+ N ++ L S VIVGR DR+TPI+ S +N ++ NP W +P S+ +KD+ Sbjct: 340 IPAYTLDFYLNNEIILDSKVIVGRADRKTPIMSSALNNVVINPPWSVPTSLARKDIAPKG 399 Query: 260 RQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIE 314 + DP Y + G+ EV +DW + P NF + RQ PG N++ K Sbjct: 400 KVDPSYFSRKGYTVYSGWGQDAYEVDPYSIDWENMSPANFPYRIRQAPGPTNSLGRYKFN 459 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 S + Y+HDTP LFN R +SGCVRV +L LL D W++ I+ +K Sbjct: 460 MPSSDAIYLHDTPNHSLFNKNARAISSGCVRVNKASELATILLGDA-GWAQTRIDGALKD 518 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 T V + +PV+ Y +AW KD Q+R DIY D Sbjct: 519 GSTRYVNIPDRIPVYLYYQTAWVDKDQQPQYRADIYQYDG 558 >gi|158422063|ref|YP_001523355.1| hypothetical protein AZC_0439 [Azorhizobium caulinodans ORS 571] gi|158328952|dbj|BAF86437.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 649 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 98/339 (28%), Positives = 165/339 (48%), Gaps = 14/339 (4%) Query: 96 ELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +P P L G+ V LR RL L + +DA + AV FQ GL+ Sbjct: 310 RVPGGPTLRPGDMDARVPALRARLG----LKSATASDRLYDADLARAVAAFQGASGLNAD 365 Query: 155 GMVDSSTLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G+V STLE +N R + N+ R + L + +G +V+VNIP + V++GK Sbjct: 366 GVVGPSTLEVLNRVENPAERRADIIANMERWR-WLPRDLGSVHVMVNIPEFVVRVVDDGK 424 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 ++ V+VG+ + QTP+L + ++ NPYW IP SI +K+M+ L++DP +L + Sbjct: 425 TIHQTRVVVGKPENQTPLLTHDMEYVVLNPYWNIPPSIARKEMLPNLQRDPYFLARQGME 484 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 ++ + G+ V V+W + FRQ PG+ NA+ K F + ++ Y+HDTP LF Sbjct: 485 VV-KNGRVVDPGTVNWAQGTGG-YSFRQPPGERNALGRIKFMFPNDHSVYLHDTPSKALF 542 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLK---DTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 N R + GC+RV++ + + W+ I +++ + L +PVH Sbjct: 543 ANDRRAYSHGCIRVQDPLKFAEVIFNIGMPGQGWTDEKIGKML-GGAERYLTLKQRIPVH 601 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPI 428 VY + + + R+D+YG + + L + + Sbjct: 602 LVYFTTFVDDSGRLVSREDVYGTNAKVKEALGLDGEQKV 640 >gi|298293068|ref|YP_003695007.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] gi|296929579|gb|ADH90388.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] Length = 678 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 105/370 (28%), Positives = 168/370 (45%), Gaps = 15/370 (4%) Query: 57 ARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLR 115 DS P + + +A ++P P L G+S V LR Sbjct: 304 PNPRAAFDSFAPQY--DEYKLLKVELAKLMAEGRGVTQVQVPAGPMLRPGDSDPRVPLLR 361 Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 RL I G +D+++ AV+ FQ GL P G+V TL A+N ++ Sbjct: 362 ARLGIGG-----APEDTEYDSFLADAVRDFQKLSGLKPDGVVGRGTLAALNGAGGDQMPD 416 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 + N+ R + + ++ YV+VNIP + V N + + V+VG+ D QTP++ + Sbjct: 417 IIANMERWR-WVPHQVAPVYVMVNIPEFMVRVVVNEQTVHETRVVVGKPDTQTPLMSENM 475 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 +FNP W +P SII+ +M+ L DP L+ I ++ G+ V +DW+ Sbjct: 476 QYAVFNPSWNVPPSIIRNEMLPKLMADPYALERQGIDVV-RNGRIVDPGAIDWSR-GATG 533 Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 + FRQ+PG+ NA+ K F +++ Y+HDTP LF R + GCVRV + Sbjct: 534 YSFRQEPGERNALGRMKFMFPNKHAVYLHDTPSRSLFARERRAFSHGCVRVHEPLAFAEA 593 Query: 356 LLK---DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 L WS+ I ++V V L PVH VY + + + + R+D+YG+ Sbjct: 594 LFALGLPNEGWSQPRIAKLV-GGNEKSVTLKRRFPVHLVYFNTFVDGNGRLVSREDLYGI 652 Query: 413 DNVHVGIIPL 422 + I+ L Sbjct: 653 NGATKAILGL 662 >gi|156974988|ref|YP_001445895.1| hypothetical protein VIBHAR_02710 [Vibrio harveyi ATCC BAA-1116] gi|156526582|gb|ABU71668.1| hypothetical protein VIBHAR_02710 [Vibrio harveyi ATCC BAA-1116] Length = 530 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 103/418 (24%), Positives = 183/418 (43%), Gaps = 38/418 (9%) Query: 6 KINKILYCFFVYLILPM----GLSLVEKPIHASVLDEIINESYHSI-VNDRFDNFLARVD 60 + L+ V++ P LSL+ I LD+ + + + +++ F+ + + Sbjct: 138 EGINWLFANKVHVKFPAPSIETLSLLSNEITVGKLDQFLTDLRSPLQMDESFNTAFSSLS 197 Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 + P+ ++ + +A +G+ L R+ I Sbjct: 198 TYAKFEFPLYQQD------QRLAR-------------------VGDELFDKSSLIARMQI 232 Query: 121 SG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 G ++ + +D +E AV FQ HGL G++ +TL +N R+ L +N Sbjct: 233 VGVEVGHLDTETTLYDENLELAVMEFQRIHGLKQDGIIGPNTLRWINFSPQQRLHSLALN 292 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R + +++ V VN+P + +G+ S V+VG+ R+TPI+ ++ ++ Sbjct: 293 AERSRIWSKER--DNVVFVNVPGYEVTYWHDGQPLFESKVVVGKASRKTPIMTGTMDSVI 350 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFI 297 NP W +P I+ KD++ ++++P YL ++NI +I + ++W + P F Sbjct: 351 LNPTWNVPWKIMVKDIIPKVKRNPMYLMEHNIQIIRSWTSREIIDPTTINWATVNPRTFP 410 Query: 298 FR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 +R Q G NA+ K + Y+HDTP LFN R +SGCVRV + L Sbjct: 411 YRMRQSSGSHNALGLYKFNMPNPQAIYLHDTPSKNLFNQDRRAFSSGCVRVEHADQLAEL 470 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L K R + R T V L + VH +Y +AW ++ + +RDDIY D Sbjct: 471 LFKTQGLEERLAKKRQSGRRSNTSVPLTERIQVHIIYQTAWL-EEGTLYYRDDIYQYD 527 >gi|238785818|ref|ZP_04629788.1| Peptidoglycan-binding domain 1 protein [Yersinia bercovieri ATCC 43970] gi|238713271|gb|EEQ05313.1| Peptidoglycan-binding domain 1 protein [Yersinia bercovieri ATCC 43970] Length = 606 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 103/306 (33%), Positives = 153/306 (50%), Gaps = 9/306 (2%) Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + + + +AVK FQ+ HGL G++ + T E +NV R L +N+ R++ L Sbjct: 300 ATLTDNVYTPELVAAVKRFQLWHGLSDDGVIGARTREWLNVSPQTRATLLALNIQRLRIL 359 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 Q ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP W + Sbjct: 360 PGQV--DNGIMVNIPNYSLNYYKNGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNV 417 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQD 301 P S++++D++ R D Y + + ++ E V +DW+ P NF + RQ Sbjct: 418 PTSLVRQDIVPKARYDAGYFQRHGYTVLSGWSNEAEVVDPSMIDWSMISPNNFPYRLRQA 477 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 478 PGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA- 536 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-VHVGII 420 W+ + +K TT V + VPV Y++AW D QFR DIY D V G Sbjct: 537 GWNDARVSSTLKQGDTTYVNIRQRVPVQLYYLTAWVADDGKPQFRTDIYNYDKTVRSGAQ 596 Query: 421 PLPEDH 426 P+ Sbjct: 597 ISPQAE 602 >gi|238753519|ref|ZP_04614882.1| Peptidoglycan-binding domain 1 protein [Yersinia ruckeri ATCC 29473] gi|238708472|gb|EEQ00827.1| Peptidoglycan-binding domain 1 protein [Yersinia ruckeri ATCC 29473] Length = 620 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 120/474 (25%), Positives = 199/474 (41%), Gaps = 64/474 (13%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESY---HSIVN 49 M+GYL N LY Y + +++ + + E +Y + + Sbjct: 136 MLGYLHFVSGVGTNGNVWLYSNVPYKMAMPPTAILNR--WQQAVREGNTAAYMTALAPQH 193 Query: 50 DRFDNFLARVDMGIDSDIPIISKETIAQTEKA-----IAFYQDILSRGGW----PELPIR 100 +++ + + + P A I ++IL R G P P++ Sbjct: 194 PQYEKMHQALKSMLADNRPWPQFTGAATLRPGQLSDDIPALREILDRSGLLNAAPAAPVK 253 Query: 101 PLH-LGNSSVSVQRLRERLIISGDLDPSKGLSVA-------------------------- 133 + + V + + L + + ++ S+ Sbjct: 254 SPEVIPMDNPVVAVVNDDLSVDEEKTRAQAHSLVVSPAAAPISEITTSPQTLTTAHSGNK 313 Query: 134 -------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + + +AVK FQ GL G++ T E +NV +R L +N+ R++ L Sbjct: 314 LSVTDNQYGEELVAAVKRFQQWQGLTDDGVIGPRTREWLNVSPQMRASLLALNIQRLRIL 373 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 Q ++VNIP SL NG L S VIVGR R+TP++ S +N ++ NP W + Sbjct: 374 PGQV--TTGIMVNIPNYSLSYYLNGTEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNV 431 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQD 301 P S+I++D+M R D Y + + ++ G + + +DW+ P +F + RQ+ Sbjct: 432 PISLIRQDIMPKARNDASYFQRHGYTVLSGWGNDAEAINPSMIDWSLISPNHFPYRLRQE 491 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 492 PGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLASMLLQDA- 550 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 W+ + +K TT V + +PV Y++AW +D QFR DIY D Sbjct: 551 GWNNERVSSTLKQGNTTYVNIRQRIPVQLYYLTAWVAEDGKPQFRTDIYNYDKT 604 >gi|162419158|ref|YP_001606446.1| hypothetical protein YpAngola_A1973 [Yersinia pestis Angola] gi|166211229|ref|ZP_02237264.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167424284|ref|ZP_02316037.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|162351973|gb|ABX85921.1| conserved hypothetical protein [Yersinia pestis Angola] gi|166207000|gb|EDR51480.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167057133|gb|EDR66896.1| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis str. K1973002] Length = 596 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 123/470 (26%), Positives = 197/470 (41%), Gaps = 60/470 (12%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHS---IVN 49 M+GYL + LY Y + +++ ++E SY + + Sbjct: 116 MLGYLHFISGVGANGSVWLYSNVPYKMAMPPAAVLN--AWQKAVNEGSTASYLASLAPQH 173 Query: 50 DRFDNFLARVDMGIDSDIPIISKETIAQTEKA-----IAFYQDILSRGGW--PELPIR-P 101 ++D + + + P T I ++IL R G P P++ P Sbjct: 174 PQYDKMQQALKLMLADRRPWPQMPTGPSLRPGQLSDDIPALREILDRTGMLHPTTPVKAP 233 Query: 102 LHLGNSSVSVQRLRERLII-----------------------SGDLDPSKG--------L 130 + + +V + + L + S D P+ Sbjct: 234 EVIPVENPTVAVVNDDLSVDEEKNRTQTNSLVVSPSAVSVPESDDAAPAPMPPVSVVTLT 293 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + + AVK FQ GL G++ T E +NV R L +N+ R++ L Sbjct: 294 DNIYTPELVEAVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGHV 353 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VNIP SL ++G L S VIVGR R+TP++ S +N ++ NP W +P S+ Sbjct: 354 --DNGIMVNIPNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSL 411 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQDPGKI 305 +++D++ R D Y + N ++ + + +DW+ P NF + RQ PG Sbjct: 412 VRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPYRLRQAPGAN 471 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D W+ Sbjct: 472 NSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWND 530 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + VK TT V + VPV Y++AW +D QFR DIY D + Sbjct: 531 ARVSSKVKQGDTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYDKM 580 >gi|114332479|ref|YP_748701.1| peptidoglycan binding domain-containing protein [Nitrosomonas eutropha C91] gi|114309493|gb|ABI60736.1| Peptidoglycan-binding domain 1 protein [Nitrosomonas eutropha C91] Length = 561 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 112/416 (26%), Positives = 201/416 (48%), Gaps = 20/416 (4%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFL---ARVDMGIDSDIPIISKET 74 +L + L + AS+ D + F +++ P I Sbjct: 147 SLLALAHDLHSGRLTASLADPDWHIPQQQFDPVTFLQQALTSGKLEQAFADLPPDI--PQ 204 Query: 75 IAQTEKAIAFYQDILSRGG-WPELPIRP--LHLGNSSVSVQRLRERLII------SGDLD 125 ++ + ++ +++ W +P + S+ ++R+R+ + Sbjct: 205 YRSLKQLLNKFRTLVAADTIWTRIPEETSLIRPHTRHTSIPQVRQRIQEAYHIFEKPEYG 264 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 S +D +E AVK FQ +HGL+ G++ +T AMN+ ++QL++ L R++ Sbjct: 265 IVVSDSEFYDDQLEIAVKAFQRQHGLNADGIIGKNTRRAMNITPGEHVQQLRITLERLR- 323 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L +K+G RY+LVNI +L AV+ L ++VGR R TP +S+I ++ NPYW Sbjct: 324 WLPRKLGDRYILVNIAGFNLVAVQENVRVLDMKIVVGRDYRSTPSFNSKITHLVLNPYWN 383 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--KEVFVEEVDWNSPEPP-NFIFRQDP 302 +P SI +KD++ R +P Y I + + E+ + +DW+S +I RQDP Sbjct: 384 VPASIARKDLLPKQRYNPDYFASEGIRVFSDYKYESELNPDFIDWHSTSRSLPYILRQDP 443 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G+ NA+ + K F + + Y+HDTP LF +R +SGC+R+ + L ++L + Sbjct: 444 GRRNALGTIKFMFPNPFSIYLHDTPSKYLFQKDIRTFSSGCIRLEKPLQLAEFVLG--QS 501 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 + + I E + + KT V L ++PV+ +Y++AWS + + F D+YG D + Sbjct: 502 FEQADIAEKISSGKTQTVHLPEKIPVYLLYLTAWSDEQGEVYFSSDVYGRDKRALA 557 >gi|30250492|ref|NP_842562.1| putative periplasmic protein [Nitrosomonas europaea ATCC 19718] gi|30139333|emb|CAD86485.1| putative periplasmic protein [Nitrosomonas europaea ATCC 19718] Length = 578 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 114/427 (26%), Positives = 207/427 (48%), Gaps = 20/427 (4%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNF-LARVDMGIDSDIPIIS----K 72 +L + L + A++ D + F +A VD + + S Sbjct: 149 SLLALVHDLSNGRLTATLADPDWYVPQRRLDPVNFLQQSIASVDSAEQLEQVLASLPPNM 208 Query: 73 ETIAQTEKAIAFYQDILSRGG-WPELP--IRPLHLGNSSVSVQRLRERL------IISGD 123 ++ + + +++ G W +P I +H ++ +R+R+ + Sbjct: 209 PQYHTLKRLLVRLRILVAAGTVWTRIPDDIPSIHPRTRHAAIPLIRQRIREAYSVFEKPE 268 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 D + S +D +E+A+K FQ ++GL+ G+V +T AMN+ I+QL++ L R+ Sbjct: 269 YDIASDDSELYDDQLETAIKAFQYQYGLNTDGVVGKNTRRAMNMTAVEHIQQLRITLERL 328 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L ++ RY+LVNI +L A+ N L ++VGR R TP +SRI+ ++ NPY Sbjct: 329 R-WLPREFSNRYILVNIAGFNLAAIRNNVRVLNMRIVVGRDYRSTPSFNSRISHLVLNPY 387 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK--EVFVEEVDWNSPEPP-NFIFRQ 300 W +P SI KD++ + +P Y I + + E+ + +DW++ ++ RQ Sbjct: 388 WNVPASIASKDLLPKQKHNPDYFASEGIRVFSDYHYELELDPDAIDWHAFSRSFPYVLRQ 447 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 DPGK NA+ + K F + + Y+HDTP LF +R +SGC+R+ + L ++L Sbjct: 448 DPGKRNALGTIKFMFPNPFSIYLHDTPSKSLFQRDIRTFSSGCIRLEKPMQLAEFVLG-- 505 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 P++ + +I E + + KT V L +PV+ +Y++AW+ + F D+YG D + Sbjct: 506 PSFEKANILEKIDSGKTQTVHLPEPIPVYLLYLTAWNDGQGEVHFSADVYGRDKRALAYA 565 Query: 421 PLPEDHP 427 + P Sbjct: 566 RWLQPEP 572 >gi|304397085|ref|ZP_07378964.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. aB] gi|304355234|gb|EFM19602.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. aB] Length = 603 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 124/484 (25%), Positives = 196/484 (40%), Gaps = 95/484 (19%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ LY Y + ++ ++N+ +++ Sbjct: 132 MLGYLQFVSNVPTQGETWLYSNVPYRLTQPSVA-------------VVNQWQNAVNAGSD 178 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSV 111 + F+A + P A+ + + WP+L L G S V Sbjct: 179 NAFIASLQPQHPQYQP---------MHAALITL--LSDKQPWPQLKSSETLRPGQVSDDV 227 Query: 112 QRLRERLIISGD-----------------------------------------LDPSK-- 128 LRE L SG L PS Sbjct: 228 PALREILQRSGMLTAQVNAPAPNDDAVPVAASPVTHSDQPVAVSPSAAPVSNLLTPSPQS 287 Query: 129 -----------GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 + +D + +AVK FQ GLD G + + T + +NV +R L Sbjct: 288 PGNVQSQTLEGNTANIYDETLVAAVKRFQQWQGLDGDGAIGARTRQWLNVSPQMRASLLA 347 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 +N+ R++ LL M ++VNI SL G L S VIVGR DR+TP++ S +N Sbjct: 348 LNIQRLR-LLPDDMH-NGIMVNIANYSLIYYNKGNKILSSRVIVGRPDRKTPLMRSALNN 405 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPP 294 ++ NP W +P ++++KD++ ++ DP YL + ++ + + +DW Sbjct: 406 VVLNPPWNVPTTLVRKDIIPKVKLDPTYLYKHGYTLLSGWSADAEVIDPSMIDWRMVTAS 465 Query: 295 NFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 +F +R Q PG+ NA+ K S + Y+HDTP LF +R +SGCVRV +L Sbjct: 466 SFPYRLIQAPGEANALGRYKFNMPSSDAIYLHDTPNHNLFQRDIRALSSGCVRVNKASEL 525 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LL+D W+ I +K T V + +PV+ Y++AW D QFR DIY Sbjct: 526 AGLLLQDA-GWNDARISSTLKEGDTRYVPIRHRIPVNLYYLTAWVADDGKPQFRTDIYNY 584 Query: 413 DNVH 416 D+ Sbjct: 585 DDTA 588 >gi|291326407|ref|ZP_06124362.2| putative peptidoglycan binding domain protein [Providencia rettgeri DSM 1131] gi|291314414|gb|EFE54867.1| putative peptidoglycan binding domain protein [Providencia rettgeri DSM 1131] Length = 583 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 113/357 (31%), Positives = 167/357 (46%), Gaps = 42/357 (11%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLD------------------------------- 125 + + L LG SS V LR+ L G L+ Sbjct: 213 VGTKALKLGQSSDDVVMLRQILQREGLLEGGNVTEEVAPPETMAQVAELAVEQTVEPTEP 272 Query: 126 ---PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 P+ +S +D + AVK FQ+++GL+ G+V T +N+ + + +N+ R Sbjct: 273 SDAPASTVSKVYDQELVDAVKKFQLQYGLEADGVVGKGTRVWLNMQPKQKAGLMALNIQR 332 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ + +LVNIP SL+ N +V L S VIVGR DR+TPI+ S +N ++ NP Sbjct: 333 LRIIPASS--GTGILVNIPGYSLDFYLNDEVILDSKVIVGRADRKTPIMSSALNNVVINP 390 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEPPNFIF- 298 W +P S+ +KD+ +QDP Y + G E+ +DW++ P NF + Sbjct: 391 PWSVPTSMARKDIAPKGKQDPSYFSRKGYTVYSGWGADSYEINPYAIDWDNITPANFPYR 450 Query: 299 -RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 RQ PG N++ K S + Y+HDTP LFN R +SGCVRV +L LL Sbjct: 451 IRQAPGPTNSLGRYKFNMPSSDAIYLHDTPNHSLFNRNARAISSGCVRVNKASELASILL 510 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 D W + I+ +K T V + +PV Y +AW KD Q+R DIY DN Sbjct: 511 GDA-GWEQKRIDGALKEGSTRYVNIPDRIPVFLYYQTAWVDKDQQPQYRADIYQYDN 566 >gi|238763355|ref|ZP_04624319.1| Peptidoglycan-binding domain 1 protein [Yersinia kristensenii ATCC 33638] gi|238698454|gb|EEP91207.1| Peptidoglycan-binding domain 1 protein [Yersinia kristensenii ATCC 33638] Length = 624 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 97/289 (33%), Positives = 147/289 (50%), Gaps = 8/289 (2%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + + AVK FQ HGL G++ + T E +NV R L +N+ R++ L + Sbjct: 321 TDNVYTPELMEAVKRFQQWHGLSEDGVIGARTREWLNVSPQTRATLLALNIQRLRILPGR 380 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP W +P S Sbjct: 381 V--DNGIMVNIPNYSLNYYKNGSEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTS 438 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQDPGK 304 ++++D++ R D Y + + ++ + V +DW+ P NF + RQ PG Sbjct: 439 LVRQDIVPKARYDSSYFQRHGYTVLSGWSNDAQVVDPSMIDWSMISPNNFPYRLRQAPGA 498 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D W+ Sbjct: 499 SNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWN 557 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + +K TT V + +PV Y++AW +D QFR DIY D Sbjct: 558 DARVSSTLKQGDTTYVNIRQRIPVQLYYLTAWVAEDGKPQFRTDIYNYD 606 Score = 44.8 bits (105), Expect = 0.026, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 66 DIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDL 124 + ++ + + +A Q + R WP++ P L G S + LRE L +G L Sbjct: 187 YLASLAPQHPQYEKMHLALKQMLADRRPWPQMANGPSLRPGQLSDDIPALREILDRTGML 246 Query: 125 DPSKGLSV 132 P V Sbjct: 247 HPVASAPV 254 >gi|255263285|ref|ZP_05342627.1| peptidoglycan-binding domain 1 protein [Thalassiobium sp. R2A62] gi|255105620|gb|EET48294.1| peptidoglycan-binding domain 1 protein [Thalassiobium sp. R2A62] Length = 533 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 100/384 (26%), Positives = 173/384 (45%), Gaps = 11/384 (2%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL 102 Y F +P + E + + + +L++GG+ L Sbjct: 147 PYRGRA-QTLAAFAQSTPAAFLRSLPPAAPEYSRLMREKL-RLEQLLAQGGFGARVSGTL 204 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G S V LR RLI G L+ + + +DA +++AV+ FQ HGL+ G T+ Sbjct: 205 APGTSGQQVVNLRNRLIAMGFLEGNA--TQTYDANIQAAVQRFQTAHGLNADGSAGQGTV 262 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 +N + R++ + V + R + + + G R+V VN+ + ++N V ++ ++G Sbjct: 263 TELNKSAESRLQAVIVAMERER-WINRPRGTRHVWVNLTDFTASIIDNDAVTFQTRSVIG 321 Query: 223 RVD--RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 D R++P + ++ NP W +PRSI K+ + L+ +P + ++ + D +G+ Sbjct: 322 ANDSNRRSPEFSDVMEFMVINPSWYVPRSIATKEYLPRLQSNPNAVS--HLEITDSRGRV 379 Query: 281 VFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 V V+++ F F RQ P + NA+ K F ++ N Y+HDTP LF VR Sbjct: 380 VNRSSVNFSQYSARTFPFNMRQPPSRGNALGLVKFMFPNQYNIYLHDTPAKNLFGREVRA 439 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 + GC+R+ + D LL + ++T V L VPVH VY +A++ Sbjct: 440 YSHGCIRLNDPFDFAYALLAKQTADPEGFFQAKLRTAAEARVNLNQPVPVHIVYRTAFTD 499 Query: 399 KDSIIQFRDDIYGLDNVHVGIIPL 422 + FR DIYG D + Sbjct: 500 VRGTLNFRRDIYGRDGKIWNALSR 523 >gi|119383985|ref|YP_915041.1| peptidoglycan binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119373752|gb|ABL69345.1| Peptidoglycan-binding domain 1 protein [Paracoccus denitrificans PD1222] Length = 535 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 98/383 (25%), Positives = 162/383 (42%), Gaps = 6/383 (1%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP 101 E D F A D +A+A +++ G P + Sbjct: 143 EVQRPRTGDLLRAFAAAADPVAMLAALPPQDARYEALRQALARQSQLVAPGDAPRVAEGL 202 Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G S +V LR RL G G + +D + AV +Q GL G+ T Sbjct: 203 WREGTSDPAVAALRVRLASVGFAAAPMGSPLTYDGALAQAVAAYQKAAGLPADGVAGPRT 262 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 + +N + V L R++ + + R+V VN+P + ENG+ + V++ Sbjct: 263 VARLNRGTGPEAEAILVALERMRWMRGHDLNARHVWVNLPEFNARIYENGREVFETRVVI 322 Query: 222 GRVDRQ--TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 G+ +R+ TP + ++ NP W +PRSI K+ + L+ + + ++ ++D G Sbjct: 323 GKANREFETPEFSETMKYMVVNPRWNVPRSITVKEYLPRLQANRHAV--GHLDVVDGAGN 380 Query: 280 EVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 + + +D+ F +R Q P NA+ K F + N Y+HDTP LFN R Sbjct: 381 VIARDRIDFRKYSAKTFPYRMRQKPSDDNALGQVKFMFPNPWNIYLHDTPTKHLFNQSSR 440 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 + GC+RV +DL LLK + +K+ + T + L VPVH VY +A+ Sbjct: 441 AYSHGCIRVGRPVDLAHELLKGQVESPEAVFSKALKSGRETYLNLRPPVPVHLVYFTAFP 500 Query: 398 PKDSIIQFRDDIYGLDNVHVGII 420 + I+ DIYG D + + Sbjct: 501 DESGQIRRFPDIYGRDALVHAAL 523 >gi|165924622|ref|ZP_02220454.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938929|ref|ZP_02227482.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. IP275] gi|166009934|ref|ZP_02230832.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. E1979001] gi|167399976|ref|ZP_02305494.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419803|ref|ZP_02311556.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|270486929|ref|ZP_06204003.1| conserved hypothetical protein [Yersinia pestis KIM D27] gi|294503394|ref|YP_003567456.1| hypothetical protein YPZ3_1284 [Yersinia pestis Z176003] gi|152960577|gb|ABS48038.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 31758] gi|165913076|gb|EDR31700.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923682|gb|EDR40814.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165991330|gb|EDR43631.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166962544|gb|EDR58565.1| conserved hypothetical protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050684|gb|EDR62092.1| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|262365029|gb|ACY61586.1| hypothetical protein YPD8_0898 [Yersinia pestis D182038] gi|270335433|gb|EFA46210.1| conserved hypothetical protein [Yersinia pestis KIM D27] gi|294353853|gb|ADE64194.1| hypothetical protein YPZ3_1284 [Yersinia pestis Z176003] Length = 569 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 123/470 (26%), Positives = 197/470 (41%), Gaps = 60/470 (12%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHS---IVN 49 M+GYL + LY Y + +++ ++E SY + + Sbjct: 89 MLGYLHFISGVGANGSVWLYSNVPYKMAMPPAAVLN--AWQKAVNEGSTASYLASLAPQH 146 Query: 50 DRFDNFLARVDMGIDSDIPIISKETIAQTEKA-----IAFYQDILSRGGW--PELPIR-P 101 ++D + + + P T I ++IL R G P P++ P Sbjct: 147 PQYDKMQQALKLMLADRRPWPQMPTGPSLRPGQLSDDIPALREILDRTGMLHPTTPVKAP 206 Query: 102 LHLGNSSVSVQRLRERLII-----------------------SGDLDPSKG--------L 130 + + +V + + L + S D P+ Sbjct: 207 EVIPVENPTVAVVNDDLSVDEEKNRTQTNSLVVSPSAVSVPESDDAAPAPMPPVSVVTLT 266 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + + AVK FQ GL G++ T E +NV R L +N+ R++ L Sbjct: 267 DNIYTPELVEAVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGHV 326 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VNIP SL ++G L S VIVGR R+TP++ S +N ++ NP W +P S+ Sbjct: 327 --DNGIMVNIPNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTSL 384 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQDPGKI 305 +++D++ R D Y + N ++ + + +DW+ P NF + RQ PG Sbjct: 385 VRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPYRLRQAPGAN 444 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D W+ Sbjct: 445 NSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA-GWND 503 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + VK TT V + VPV Y++AW +D QFR DIY D + Sbjct: 504 ARVSSKVKQGDTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYDKM 553 >gi|153835596|ref|ZP_01988263.1| cell wall degradation protein [Vibrio harveyi HY01] gi|148867813|gb|EDL67053.1| cell wall degradation protein [Vibrio harveyi HY01] Length = 515 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 103/418 (24%), Positives = 183/418 (43%), Gaps = 38/418 (9%) Query: 6 KINKILYCFFVYLILPM----GLSLVEKPIHASVLDEIINESYHSI-VNDRFDNFLARVD 60 + L+ V++ P LSL+ I LD+ + + + +++ F+ + + Sbjct: 123 EGINWLFANKVHVKFPAPSIETLSLLSNEITVGKLDQFLTDLRSPLQMDESFNTAFSSLS 182 Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 + P+ ++ + +A +G+ L R+ I Sbjct: 183 TYAKFEFPLYQQD------QRLAR-------------------VGDELFDKSSLIARMQI 217 Query: 121 SG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 G ++ + +D +E AV FQ HGL G++ +TL +N R+ L +N Sbjct: 218 VGVEVGHLDTETTLYDENLELAVMEFQRIHGLKQDGIIGPNTLRWINFSPQQRLHSLALN 277 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R + +++ V VN+P + +G+ S V+VG+ R+TPI+ ++ ++ Sbjct: 278 AERSRIWSKER--DNVVFVNVPGYEVTYWHDGQPLFESKVVVGKASRKTPIMTGTMDSVI 335 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFI 297 NP W +P I+ KD++ ++++P YL ++NI +I + ++W + P F Sbjct: 336 LNPTWNVPWKIMVKDIIPKVKRNPMYLMEHNIQIIRSWTSREIIDPTTINWATVNPRTFP 395 Query: 298 FR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 +R Q G NA+ K + Y+HDTP LFN R +SGCVRV + L Sbjct: 396 YRMRQSSGSHNALGLYKFNMPNPQAIYLHDTPSKNLFNQDRRAFSSGCVRVEHADQLAEL 455 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L K R + R T V L + VH +Y +AW ++ + +RDDIY D Sbjct: 456 LFKTQGLEERLAKKRQSGRRSNTSVPLTERIQVHIIYQTAWL-EEGTLYYRDDIYQYD 512 >gi|253990246|ref|YP_003041602.1| hypothetical protein PAU_02769 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781696|emb|CAQ84859.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 568 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 115/429 (26%), Positives = 185/429 (43%), Gaps = 42/429 (9%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ LY Y I+ +V D++ Sbjct: 152 MLGYLQFVSDVGQQGQNWLYRTTPYKIVLP----------------------SPVVIDQW 189 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSV 111 +A ++ K + + + WP+L + L G SS V Sbjct: 190 QQAIAGSNIVAYVTALAPQHPQYENMRKEMM--KQLADSKPWPQLSDKGVLRPGQSSSDV 247 Query: 112 QRLRERLIISGDLDP-SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 LRE LI G LD + + + + V+ FQ GL P G++ T + +N Sbjct: 248 TALREVLIRIGMLDELTTKSDNTYSPELVATVRNFQQWQGLAPDGVIGKRTRDWLNTSPQ 307 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 R + +N+ R++ + ++VNIP SL+ N + L S VIVGR R+TPI Sbjct: 308 DRAGLMALNIQRLRIIPGHV--STGIMVNIPDYSLQYYLNEQEVLNSKVIVGRPSRKTPI 365 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK---GKEVFVEEVD 287 +++ +N ++ NP W +P S+ +KD+ DP Y + + + +D Sbjct: 366 MNNVLNNVVINPPWSVPTSLARKDIAPRGVNDPGYFQRRGYVIFSSWRADASVIDPYTID 425 Query: 288 WNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 WN P NF +R Q PG N++ K + + Y+HDTP LF+ +R +SGCVR Sbjct: 426 WNVVTPANFPYRIWQAPGPTNSLGRYKFNMPNSDAIYLHDTPNHGLFDKDIRAISSGCVR 485 Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 V +L LL D W++ + +K T V + +PV+ Y++AW + + Q+ Sbjct: 486 VNKASELASMLLGDA-GWNQNRVSNTLKQGNTAYVNIPQRIPVYLYYLTAWVDELGVAQY 544 Query: 406 RDDIYGLDN 414 R DIY DN Sbjct: 545 RTDIYDYDN 553 >gi|121606474|ref|YP_983803.1| peptidoglycan-binding domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120595443|gb|ABM38882.1| Peptidoglycan-binding domain 1 protein [Polaromonas naphthalenivorans CJ2] Length = 525 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 117/403 (29%), Positives = 187/403 (46%), Gaps = 25/403 (6%) Query: 40 INESYHSIVNDRFDNFLA--------RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 I+ ++ + FD R+ P + AQ +A+A Y++ ++ Sbjct: 113 IHHNFSPPQREAFDAAAYLQAALAARRLTDAASEAAPRL--PIYAQLREALARYRERVNH 170 Query: 92 GGW----PELP---IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 W P LP L G S + L ERL GD+ P L ++ + A K Sbjct: 171 PAWRQPLPRLPGGKAGKLAPGQSYAGLALLAERLTALGDMAPGLPLPARYEGPLVDAAKA 230 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ RHGL G++ +TL + V R+RQ+++ L R++ G R ++VNIP Sbjct: 231 FQQRHGLAADGVIGKTTLAQLQVMPAARVRQIELALERLR-WTPLLQGPRMIVVNIPEFV 289 Query: 205 LEAVE--NGK--VGLRSTVIVGRV-DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 L A E +G+ V ++VG+ D +TP+ + I F+PYW +P SI + +++ L Sbjct: 290 LRAYEVQDGQIHVQQEMKIVVGKALDTRTPLFDEDMRFIEFSPYWNVPPSIARAEIVPRL 349 Query: 260 RQDPQYLKDNNIHMIDEKGK-EVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR 318 R+DP YL N+ + G+ + V + RQ PG NA+ K F + Sbjct: 350 RRDPGYLARENMEFVSAGGRVDKTVSAGLLEAVLAGQSRIRQRPGPKNALGDIKFVFPNS 409 Query: 319 NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT 378 +N Y+H TP LF R + GC+RV + + L ++LK+ P W+ I+ + ++ Sbjct: 410 DNIYLHHTPATQLFERARRDFSHGCIRVEHPVALAKFVLKNMPEWTPERIQNAMSRGESA 469 Query: 379 PVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 ++LA VPV Y + KD F DDIYGLD + + Sbjct: 470 TLRLAEPVPVLIAYGTTLV-KDGRTFFFDDIYGLDRLLDAALR 511 >gi|123441868|ref|YP_001005851.1| hypothetical protein YE1557 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088829|emb|CAL11635.1| putative exported protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 623 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 119/473 (25%), Positives = 194/473 (41%), Gaps = 65/473 (13%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHS----IV 48 M+GYL + LY Y + +++ + + E Y + Sbjct: 138 MLGYLHFISGVGANGSVWLYSNVPYKMAMPPATILNR--WQQAVHEGTTAPYLASLAPPQ 195 Query: 49 NDRFDNFLARVDMGIDSDIPIISKETIAQTEKA-----IAFYQDILSRGGW--PELPI-- 99 + +++ + + P I ++IL R G P +P Sbjct: 196 HPQYEKMHQALKEMLADRRPWPQMANGPSLRPGQLSDDIPALREILDRTGMLHPVVPAPV 255 Query: 100 -RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS--------------------------- 131 P + + +V + + L + + ++ S Sbjct: 256 QTPEVIPVDNPAVAVVNDDLSVDEEKSRAQAHSLVVSPSAAPVADTPVTSGVVAPSSAPV 315 Query: 132 ------VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + AVK FQ HGL G++ + T E +NV R L +N+ R++ Sbjct: 316 TATVTDNVYTPELMEAVKRFQRWHGLSDDGVIGARTREWLNVSPQTRATLLALNIQRLRI 375 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L + ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP W Sbjct: 376 LPGRV--DNGIMVNIPNYSLNYYKNGTQVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWN 433 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQ 300 +P S++++D++ R D Y + + ++ + V +DW+ P NF + RQ Sbjct: 434 VPTSLVRQDIVPKARYDSSYFQRHGYTVLSGWSNDAEVVDPSMIDWSMISPNNFPYRLRQ 493 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 494 APGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA 553 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ + +K TT V + VPV Y++AW D QFR DIY D Sbjct: 554 -GWNDARVSSTLKQGDTTYVNIRQRVPVQLYYLTAWVADDGKPQFRTDIYNYD 605 >gi|238789300|ref|ZP_04633087.1| Peptidoglycan-binding domain 1 protein [Yersinia frederiksenii ATCC 33641] gi|238722632|gb|EEQ14285.1| Peptidoglycan-binding domain 1 protein [Yersinia frederiksenii ATCC 33641] Length = 625 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 98/292 (33%), Positives = 148/292 (50%), Gaps = 8/292 (2%) Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + + + AVK FQ HGL G++ T E +NV R L +N+ R++ L Sbjct: 319 AAVTDNVYTPELMEAVKRFQQWHGLSDDGVIGIRTREWLNVTPQTRATLLALNIQRLRIL 378 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP W + Sbjct: 379 PGRV--DNGIMVNIPNYSLNYYKNGAEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNV 436 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQD 301 P S+I++D++ R D Y + + ++ + V ++WN P NF + RQ+ Sbjct: 437 PTSLIRQDIVPKARYDSSYFQRHGYTVLSGWSNDAEVVDPSMINWNMISPNNFPYRLRQE 496 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 497 PGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA- 555 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ + +K TT V + +PV Y++AW +D QFR DIY D Sbjct: 556 GWNDARVSSTLKQGNTTYVNIRQRIPVQLYYLTAWVAEDGKPQFRTDIYNYD 607 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 34/150 (22%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL + LY Y + ++V + E Y + + + Sbjct: 138 MLGYLHFISGVGANGSVWLYSNVPYKMAMPPATIVNS--WQQAVHEGTTAPYLASLAPQ- 194 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSV 111 + +A+ Q + R WP++ P L G S + Sbjct: 195 -------------------HPQYEKMHQALK--QMLADRRPWPQMANGPSLRPGQLSDDI 233 Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESA 141 LRE L +G L P +S D+ V A Sbjct: 234 PALREILDRTGMLHPVASVSAK-DSEVIPA 262 >gi|238749753|ref|ZP_04611258.1| Peptidoglycan-binding domain 1 protein [Yersinia rohdei ATCC 43380] gi|238712408|gb|EEQ04621.1| Peptidoglycan-binding domain 1 protein [Yersinia rohdei ATCC 43380] Length = 622 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 99/294 (33%), Positives = 152/294 (51%), Gaps = 8/294 (2%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + + + AVK FQ+ HGL G++ + T E +NV R L +N+ R++ Sbjct: 314 STATVTDNVYTPELVEAVKRFQLWHGLSDDGIIGARTREWLNVSPQTRATLLALNIQRLR 373 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L + ++VNIP SL +NG+ L S VIVGR R+TP++ S +N ++ NP W Sbjct: 374 ILPGRV--DNGIMVNIPNYSLNYYKNGEQVLSSRVIVGRPSRKTPLMSSALNNVVVNPPW 431 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--R 299 +P S+I++D++ R D Y + + ++ + V E +DW+ P +F + R Sbjct: 432 NVPTSLIRQDILPKARYDSSYFQRHGYTVLSGWNNDAEVVDPEMIDWSMISPNHFPYRLR 491 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q+PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 492 QEPGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQD 551 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ + +K TT V + VPV Y++AW +D QFR DIY D Sbjct: 552 -VGWNDARVSSTLKQGSTTYVNIRERVPVQLYYLTAWVAEDGKPQFRTDIYNYD 604 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 33/141 (23%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL + LY Y + +++ + + E Y + + + Sbjct: 138 MLGYLHFISGVGANGSVWLYSNVPYKMAMPPATILNR--WQQAVHEGTTAPYLASLAPQ- 194 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSV 111 + +A+ + R WP + P L G S + Sbjct: 195 -------------------HPQYEKMHQALKHM--LADRRPWPLMANGPSLRPGQLSDDI 233 Query: 112 QRLRERLIISGDLDPSKGLSV 132 LRE L +G L P G V Sbjct: 234 PALREILDRTGMLHPVDGAPV 254 >gi|332162190|ref|YP_004298767.1| hypothetical protein YE105_C2568 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606244|emb|CBY27742.1| L,D-transpeptidase YcbB [Yersinia enterocolitica subsp. palearctica Y11] gi|325666420|gb|ADZ43064.1| hypothetical protein YE105_C2568 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 623 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 98/292 (33%), Positives = 147/292 (50%), Gaps = 8/292 (2%) Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + + + AVK FQ HGL G++ + T E +NV R L +N+ R++ L Sbjct: 317 ATVTDNVYTPELMEAVKRFQRWHGLSDDGVIGARTREWLNVSPQTRATLLALNIQRLRIL 376 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP W + Sbjct: 377 PGRV--DNGIMVNIPNYSLNYYKNGTQVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNV 434 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQD 301 P S++++D++ R D Y + + ++ + V +DW+ P NF + RQ Sbjct: 435 PTSLVRQDIVPKARYDSSYFQRHGYTVLSGWSNDAEVVDPSMIDWSMISPNNFPYRLRQA 494 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 495 PGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQDA- 553 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ + +K TT V + VPV Y++AW D QFR DIY D Sbjct: 554 GWNDARVSSTLKQGDTTYVNIRQRVPVQLYYLTAWVADDGKPQFRTDIYNYD 605 >gi|328474745|gb|EGF45550.1| putative amidase [Vibrio parahaemolyticus 10329] Length = 513 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 109/418 (26%), Positives = 179/418 (42%), Gaps = 39/418 (9%) Query: 6 KINKILYCFFVYLILPM----GLSLVEKPIHASVLDEIINESYHSIVND-RFDNFLARVD 60 + L+ ++ P LS++ I LD+ + + D F+ A + Sbjct: 122 EGVNWLFANKAHVSFPAPSVDTLSVLSNEITVGKLDQFLASLRSPLQKDASFNTVFASLS 181 Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 P FY+ L +G+ + L ER+ I Sbjct: 182 EFSQYQYP---------------FYEQ-----------KGLLRIGDPIENKSTLVERMAI 215 Query: 121 SG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 G D+ +D +E AVK FQ HGL+ G++ +T+ +N R+ L +N Sbjct: 216 VGVDVSYIDSEIPQYDENLELAVKEFQRIHGLNQDGVIGPNTIRWINFSPQQRLHLLALN 275 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R + +++ V VN+P + +G+ S V+VGR R+TPI+ ++ ++ Sbjct: 276 AERSRIWAKER--DNVVFVNVPGYEVTYWHDGQPLFESKVVVGRASRKTPIMTGTLDSVI 333 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFI 297 NP W +P I+ KD++ ++++P YL ++NI +I + ++W + P F Sbjct: 334 LNPTWNVPWKIMVKDIIPKVKRNPMYLMEHNIQIIRSWTSREIIDPTTINWATVNPRTFP 393 Query: 298 FR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 +R Q G NA+ K + Y+HDTP LF R +SGCVRV N L Sbjct: 394 YRMRQASGSHNALGLYKFNMPNPQAIYLHDTPSKNLFQQDRRAFSSGCVRVENADQLAEL 453 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L K R + TT V L +PVH +Y +AW ++ + +RDDIY D Sbjct: 454 LFKTQGLEERLEKKRESARSSTTSVPLGERIPVHIIYQTAWL-EEGTLYYRDDIYKYD 510 >gi|238795867|ref|ZP_04639380.1| Peptidoglycan-binding domain 1 protein [Yersinia mollaretii ATCC 43969] gi|238720330|gb|EEQ12133.1| Peptidoglycan-binding domain 1 protein [Yersinia mollaretii ATCC 43969] Length = 574 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 152/308 (49%), Gaps = 9/308 (2%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + + + AVK FQ+ HGL G++ + T E +N+ R L +N+ R++ Sbjct: 266 STTTLTDNIYTPELVEAVKRFQLWHGLSDDGVIGARTREWLNISPQTRATLLALNIQRLR 325 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L + ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP W Sbjct: 326 ILPGKV--DNGIMVNIPNYSLNYYKNGTEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPW 383 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--R 299 +P S++++D++ R D Y + + ++ E V +DW+ P NF + R Sbjct: 384 NVPTSLVRQDIVPKARYDAGYFQRHGYTVLSGWSNEAEVVDPSMIDWSMISPNNFPYRLR 443 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 444 QAPGASNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQD 503 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-VHVG 418 W+ + VK TT V + VPV Y++AW D QFR DIY D V G Sbjct: 504 A-GWNDARVSSTVKQGDTTYVNIRQRVPVQLYYLTAWVADDGRPQFRTDIYNYDKTVRSG 562 Query: 419 IIPLPEDH 426 P+ Sbjct: 563 AQISPQAE 570 Score = 46.8 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 49/159 (30%), Gaps = 39/159 (24%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL + LY Y + P A +N ++ Sbjct: 87 MLGYLHFISGVGANGSVWLYSNVPY-------KMAMPPAMA------LNRWKQAVQEGST 133 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSV 111 +LA + + KA+ Q + R WP+L P L G S + Sbjct: 134 ATYLASLAPQ---------HPQYDKMHKALK--QMLADRRPWPQLSNGPSLRPGQLSDDI 182 Query: 112 QRLRERLIISGDLDPSKGLSVA------FDAYVESAVKL 144 LRE L +G L P V D +AV Sbjct: 183 PALREILDRTGMLYPVVATPVKAPEVIPVDNPTVAAVND 221 >gi|304320160|ref|YP_003853803.1| hypothetical protein PB2503_02927 [Parvularcula bermudensis HTCC2503] gi|303299063|gb|ADM08662.1| hypothetical protein PB2503_02927 [Parvularcula bermudensis HTCC2503] Length = 572 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 117/404 (28%), Positives = 197/404 (48%), Gaps = 22/404 (5%) Query: 22 MGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA 81 M S ++P+H+ ++ + D +++ I IP S + ++ Sbjct: 164 MASSATDRPVHSQLVKSV------------RDAGQGKIERSISPFIP--SNPQYERLQET 209 Query: 82 IAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPS-KGLSVAFDAYVE 139 + Y+ I GGW L + P+ G+ + LR RL G LD S D + Sbjct: 210 LKTYRQIEEDGGWEALDVGPIVKPGDRHAVISPLRTRLAKEGFLDRQHDNGSPLLDRPLR 269 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 SA+ Q +HG+D G+ T A+N PV+ +I +L +L R ++L +G +YV N Sbjct: 270 SALIAAQAQHGIDEDGVFGPETARALNEPVESKIARLADSLYRWREL--GDLGDKYVWAN 327 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IP+ E +N + + I+G+ DR TP +++ I+ NP W +P SI+Q+D + L Sbjct: 328 IPSFRAEGWKNRRKEISMRAIMGQPDRPTPTFSDKVDYIVANPKWYVPSSIMQRDKLPKL 387 Query: 260 RQDPQYLKDNNIHMIDEK-GKEVFVEEVDWNSPE-PPNFIFRQDPGKINAMASTKIEFYS 317 ++DP Y +ID+ G+ V EVDW + + + Q GK NA+ KI F + Sbjct: 388 QRDPGYAARGEYTVIDKTTGEAVSPYEVDWFADDVTARYRLVQGAGKGNALGRIKIIFPN 447 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 + + Y+HDTP LF++ R +SGCVR+ + ++ W+ + IE ++ ++T Sbjct: 448 QYSVYLHDTPTKSLFDHATRAFSSGCVRLEHPQEMAEWIARTNGQEKVDQIEMALRDKET 507 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY--GLDNVHVGI 419 V+L+ E+PVH Y++ + F DIY G D V + Sbjct: 508 ERVELSAELPVHITYMTVTVDEAGTPTFWRDIYNKGQDEQLVAM 551 >gi|94967237|ref|YP_589285.1| peptidoglycan binding domain-containing protein [Candidatus Koribacter versatilis Ellin345] gi|94549287|gb|ABF39211.1| Peptidoglycan-binding domain 1 [Candidatus Koribacter versatilis Ellin345] Length = 625 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 103/382 (26%), Positives = 175/382 (45%), Gaps = 13/382 (3%) Query: 57 ARVDMGIDSDIPIISKETIAQTEKAIAFYQDIL--SRGGWPELPIRPLHLGNSSVSVQRL 114 V+ + + P + T+ + Y ++ G +P + L G + RL Sbjct: 247 QNVEAELAAVQPQFAG--YKATQAWLQRYIELARQDNGEQLPVPTKALDPGKPYAGIPRL 304 Query: 115 RERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 L + GDL + A + AVK +Q RHGL G + + T++ +N P+ R Sbjct: 305 TSLLHLLGDLPADAVVPAGDVYQAPLVDAVKRYQSRHGLTADGRLGAQTVKELNTPLSTR 364 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRV-DRQTPI 230 + QL++ L R + L Q+ V+VNIP L A + N KV L V+VG+ +TP+ Sbjct: 365 VEQLRLTLERWR-WLPQEFPQPPVVVNIPEFRLRAYDANHKVVLSMNVVVGKALRHETPV 423 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD--- 287 + ++F PYW +P SI + +++ +++D Y+ N + + G+ V + Sbjct: 424 FDDEMKYVVFRPYWNVPPSIQRSEIVPAIQRDRDYISKKNYEVTTQAGQVVTSGTISDEV 483 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 RQ PG NA+ K+ F ++ N Y+H TP LF+ R + GC+RV Sbjct: 484 LQQLRAGKLAVRQKPGPTNALGLVKLIFPNQYNVYLHSTPSQQLFSQARRDFSHGCIRVE 543 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTR-KTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 +L W L+D P W+ + ++ V L+ VPV +Y +A + +D + F Sbjct: 544 KPAELSAWALQDKPEWTVERVRAAMQKGPDNVQVNLSKPVPVLILYGTAVAEEDGSVHFF 603 Query: 407 DDIYGLDNVHVGIIPLPEDHPI 428 DD+YG D + +P+ Sbjct: 604 DDLYGYDADLEKALARGYPYPL 625 >gi|300022492|ref|YP_003755103.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299524313|gb|ADJ22782.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 452 Score = 399 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 134/394 (34%), Positives = 203/394 (51%), Gaps = 7/394 (1%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 ++ D+I + + P S I AI YQ I+ Sbjct: 39 AQMTLWDQIQGSLSGGSAEPAPERKKEPLQDLRPDSTPWRSDAMINAISAAIERYQSIVD 98 Query: 91 RGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKG--LSVAFDAYVESAVKLFQM 147 GGWP +P + G V LR+RL ISGD+ S FD+ +E VK FQ Sbjct: 99 SGGWPVVPTGRMMRSGEDDPRVPILRKRLRISGDMPAKGSYYDSETFDSELEEGVKRFQR 158 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 RHG+ +G ++ S +N R+ QL++NL R++ L+ + RYVLVN+PA LEA Sbjct: 159 RHGIRITGRIEQSVYPVLNTTAAERLAQLKLNLQRVQALM-HGIEDRYVLVNVPAFQLEA 217 Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 V+ +V LR VIVGR RQTP + + I + F PYW +P S+ D++ L+Q+P YL Sbjct: 218 VDKYEVQLRHRVIVGRPQRQTPDVRAMIKALNFFPYWRVPDSVATLDLVPRLKQEPGYLA 277 Query: 268 DNNIHMIDE-KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT 326 D I + + G E+ VDW++P+ ++ F+QDPG NA+ +I+ + YMHDT Sbjct: 278 DEGIRVYNGVNGPELNPATVDWSAPQVASYKFKQDPGDKNALGLLRIDMSNEFGVYMHDT 337 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR-YHIEEVVKTRKTTPVKLATE 385 P LF R ++GCVRV+N+ DL W+ + P W + + + + + +KL Sbjct: 338 PMKNLFGQQSRPFSAGCVRVQNVFDLGDWIAHNEPGWEQPGRVRDTLAAGQPMELKLMHP 397 Query: 386 VPVHFVYISAWSPK-DSIIQFRDDIYGLDNVHVG 418 +PV+F Y +AW+ + ++FR DIYG D + Sbjct: 398 IPVYFAYFTAWAEPSNGRVEFRPDIYGRDGAALQ 431 >gi|149911942|ref|ZP_01900540.1| hypothetical protein PE36_11037 [Moritella sp. PE36] gi|149804989|gb|EDM65018.1| hypothetical protein PE36_11037 [Moritella sp. PE36] Length = 409 Score = 399 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 125/397 (31%), Positives = 208/397 (52%), Gaps = 19/397 (4%) Query: 24 LSLVEKPIHASVLDEIINESYHSIVND---RFDNFLARVDMGIDSDIPIISKETIAQTEK 80 +S++ K H + N +++ VN + DN L ++D SD P+ SK+ + + + Sbjct: 18 VSMLGKTTHMTNSMNTTNNKHYAYVNHSNIQPDNLLPKMDA--VSDAPV-SKKVLQFSSR 74 Query: 81 AIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 A ++ + + W ++ + R LH+G+SS +V + RLI+ GD + S S + + Sbjct: 75 A-SYLNWLSVQYSWEDIALSRLLHIGDSSAAVHEIHSRLILLGDSEESLRFSDVYTVEIA 133 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 +AV+ FQ RHGL ++ TL+ +N+ R L+ N+ + + RY+LVN Sbjct: 134 AAVRNFQRRHGLKADAIIGPDTLKWLNINPQRRAELLRQNMEEKIHFMA-NLSDRYLLVN 192 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 IPA L +NG++ LRS VIVG+ + TPIL S I+ ++ NP W +PRSI++ D++ + Sbjct: 193 IPAYELLLSDNGEIALRSRVIVGKPKKPTPILTSEISSMVINPSWRVPRSILEDDLLPKV 252 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYS 317 + + ++ N + + + + + +W F +R Q PG NA+ K F + Sbjct: 253 KMNGEFFSQRNFKVFNYQNQTIEKSPQEWQKLAYGQFPYRLEQMPGTQNALGRYKFYFPN 312 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTPTWSRYHIEEVVK 373 + Y+HDT P LF+N R +SGC+R+ + +L W L+ + P WSR I Sbjct: 313 DFSVYLHDTSNPQLFSNANRALSSGCIRIEKVDELANWIANSLVDNKPLWSRLKINR--- 369 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 T L +PVH VY +AW + + QFRDDIY Sbjct: 370 -ETTKWFPLNDVLPVHLVYWTAWIDDNGLSQFRDDIY 405 >gi|311747884|ref|ZP_07721669.1| putative peptidoglycan binding protein [Algoriphagus sp. PR1] gi|126575878|gb|EAZ80188.1| putative peptidoglycan binding protein [Algoriphagus sp. PR1] Length = 548 Score = 399 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 99/329 (30%), Positives = 173/329 (52%), Gaps = 3/329 (0%) Query: 94 WPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRHGL 151 W ++ I + +H+G+S+ + RLRERLI L+ +D+ + +K FQ HGL Sbjct: 219 WKKVKISKSIHVGDSNSDIPRLRERLIYWELLEEYAVQDEKVYDSIMMDGIKDFQGTHGL 278 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 D G++ T +A N R+ + +VN+ R++ L + ++LVN+ L+ ++N Sbjct: 279 DIDGVIGPQTAQAFNDSPKDRLNKARVNMERLRWLPDTVKNAEFILVNLANFQLDYLKNL 338 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 + VIVGR ++PI + ++ I+F+PYW IP SI +++ +R++P Y+ N+ Sbjct: 339 DTLISERVIVGRKYHESPIFMAEMSYIVFSPYWNIPYSITHSEIIPSVRKNPNYIAAKNM 398 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 ++ GK + ++WNS + ++ RQ PG N++ K F +++N Y+HDT L Sbjct: 399 EVVTSSGKVLDPSTINWNS-KSFPYMVRQKPGPGNSLGLVKFMFPNKHNVYIHDTNARSL 457 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 F R + GC+R++N D LL P W+ I+E + V+L +PV V Sbjct: 458 FALDDRARSHGCIRIQNPQDFAKELLSYDPYWTSEKIDEAMHQTHEKVVQLDRHIPVVLV 517 Query: 392 YISAWSPKDSIIQFRDDIYGLDNVHVGII 420 Y++ W+ FR+DIY D + + Sbjct: 518 YLTFWADSKGEAHFREDIYERDEEVLVAL 546 >gi|255035938|ref|YP_003086559.1| ErfK/YbiS/YcfS/YnhG family protein [Dyadobacter fermentans DSM 18053] gi|254948694|gb|ACT93394.1| ErfK/YbiS/YcfS/YnhG family protein [Dyadobacter fermentans DSM 18053] Length = 540 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 116/407 (28%), Positives = 187/407 (45%), Gaps = 33/407 (8%) Query: 14 FFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF-DNFLARVDMGIDSDIPIISK 72 FF Y L +K I+ L+ I + + F D+ L + + P+ Sbjct: 145 FFRYTDLAYS---GDKRINTQELNWFI--PRRKLNPEVFLDSLLKNKGQNVAAYEPV--N 197 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 ++ + Y I G + + G+ + L+ RL + GDL P + Sbjct: 198 RHYNLLKQKVLEYYTITKNGEPAAVDTDKKFREGDRDTLITALKTRLHLLGDL-PEPDST 256 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 FD + +AVK FQ R G +G+ + + +NVPV RIRQ+ +N+ RI+ + Sbjct: 257 PVFDTTLTAAVKHFQQRVGQKQTGVTGPAFFKELNVPVTARIRQMLINMERIR-WMPAAP 315 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 Y+LVNIP +L A E+GK+ V+VG T I +N+++F+PYW +P SI+ Sbjct: 316 PTDYILVNIPEFTLHAYEDGKLSFDMVVVVGSEANSTVIFSGTLNQVVFSPYWNVPTSIL 375 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 +K+++ ++++P YL +N+ WN RQ PGK N++ Sbjct: 376 KKEVLPGIKKNPNYLARHNME---------------WNGGS-----VRQKPGKSNSLGLV 415 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F + + Y HDTP LF R + GC+R+ + WLL+ TW+ I Sbjct: 416 KFLFPNSYSIYFHDTPSKSLFKESQRAFSHGCIRLAEPKKMAEWLLRRDSTWTSEKITAA 475 Query: 372 VKTRKTTPVKL--ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 + + K V+L EVPV Y ++W + +QFR D+YG D Sbjct: 476 MNSGKEKYVRLRGKNEVPVFIGYFTSWVDQHGNLQFRKDVYGHDRRM 522 >gi|163803521|ref|ZP_02197391.1| GTP cyclohydrolase II [Vibrio sp. AND4] gi|159172697|gb|EDP57548.1| GTP cyclohydrolase II [Vibrio sp. AND4] Length = 521 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 108/418 (25%), Positives = 179/418 (42%), Gaps = 38/418 (9%) Query: 6 KINKILYCFFVYLILP----MGLSLVEKPIHASVLDEIINESYHSI-VNDRFDNFLARVD 60 + L+ ++ LP LSL+ I LD+ + + + D F+ A + Sbjct: 129 EGLNWLFASKAHVKLPGPSIETLSLLSNEITVGKLDQFLAGLRSPLQMEDSFNTAFASLS 188 Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 P YQ R +G++ L R+ I Sbjct: 189 TYAKFKFP---------------RYQQ----------DKRLARVGDALFDKASLIARMQI 223 Query: 121 SG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 G ++ S +D +E AV FQ HGL G++ +TL +N R+ L +N Sbjct: 224 VGVEVGHLDTESRLYDDNLELAVMEFQRIHGLKQDGVIGPNTLRWVNFSPQQRLHSLALN 283 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R + +++ V VN+P + +G+ S V+VG+ R+TPI+ ++ ++ Sbjct: 284 AERSRIWSKKR--DNVVFVNVPGYEVTYWHDGRPLFESKVVVGKASRKTPIMTGTMDSVI 341 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFI 297 NP W +P I+ KD++ ++++P YL ++NI +I + ++W + P F Sbjct: 342 LNPTWNVPWKIMVKDIIPKVKRNPMYLIEHNIQIIRSWSSREVIDPTTINWATVNPKTFP 401 Query: 298 FR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 +R Q G NA+ K + Y+HDTP LFN R +SGCVRV + L Sbjct: 402 YRMRQSSGSHNALGLYKFNMPNPQAIYLHDTPSKNLFNEDRRAFSSGCVRVEHADQLAEL 461 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L K +R + R T V L + VH +Y +AW ++ + +RDDIY D Sbjct: 462 LFKTQGLEARLERKRQSGRRSNTSVPLTERIQVHIIYQTAWL-EEGTLYYRDDIYQYD 518 >gi|126729661|ref|ZP_01745474.1| peptidoglycan binding protein, putative [Sagittula stellata E-37] gi|126709780|gb|EBA08833.1| peptidoglycan binding protein, putative [Sagittula stellata E-37] Length = 540 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 110/419 (26%), Positives = 201/419 (47%), Gaps = 20/419 (4%) Query: 11 LYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDM-GIDSDIPI 69 L F+ + +++ P +I++ + + L+R+ D+ Sbjct: 120 LSKLFISFANDLQTGVLDDP------GAVISDIKREVPRRAPEELLSRLTTERPDAVFRS 173 Query: 70 ISKET--IAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 + T ++ +A + + GGW P + L G S +V LR RL+ L P Sbjct: 174 LVPPTAEYSRLMRAKLMLEHRIRHGGWGPVVQASSLEPGESGQAVVALRNRLVAMNYLKP 233 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 S L+ +D + +AV+ Q HGL+ G+ +STL A+N + R++ + V + R + L Sbjct: 234 S--LTTRYDEDMTAAVRAVQEDHGLNVDGVAGASTLRAINAAPEERLKSIMVAMERERWL 291 Query: 187 -LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPY 243 + G R+VLVN+ + +++ KV + ++G+ +TP + ++ NPY Sbjct: 292 NSPEGRGKRHVLVNLVDFHAQIIDDDKVTFETRSVIGQNQSTHRTPEFSDTMEHMVINPY 351 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQD 301 W +PRSII + + LLR +P ++ +ID +G+ V + + +F + RQ Sbjct: 352 WYVPRSIIVNEYLPLLRSNPG--AAGHLEIIDGRGRVVSRGQ-SFAQYSGRSFPYSMRQR 408 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG NA+ + K F ++ N Y+HDTP LF+ VR + GCVR+ + D LL Sbjct: 409 PGPRNALGTVKFMFPNKYNIYLHDTPSQSLFSREVRTFSHGCVRLNDPHDFAYALLSRQE 468 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + ++++ + T V LA +PVH +Y +A++ + +R+D+YG D + + Sbjct: 469 RDPVNFFQSILRSGQNTKVPLAEPIPVHLIYRTAFTQAKGNVNYRNDVYGRDEILWRAL 527 >gi|28898690|ref|NP_798295.1| putative amidase [Vibrio parahaemolyticus RIMD 2210633] gi|28806908|dbj|BAC60179.1| putative amidase [Vibrio parahaemolyticus RIMD 2210633] Length = 529 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 105/418 (25%), Positives = 180/418 (43%), Gaps = 39/418 (9%) Query: 6 KINKILYCFFVYLILPM----GLSLVEKPIHASVLDEIINESYHSI-VNDRFDNFLARVD 60 + L+ ++ P LS++ I LD+ + + ++ F+ A + Sbjct: 138 EGVNWLFANKAHVSFPAPSVDTLSVLSNEITVGKLDQFLASLRSPLQMDASFNTVFASLS 197 Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 P ++ ++ +G+ + L ER+ I Sbjct: 198 EFSQYQYPFYEQKGLS--------------------------RVGDPIENKSTLVERMAI 231 Query: 121 SG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 G D+ +D +E AVK FQ HGL+ G++ +T+ +N R+ L +N Sbjct: 232 VGVDVSYIDSEIPQYDENLELAVKEFQRIHGLNQDGVIGPNTIRWINFSPQQRLHLLALN 291 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R + +++ V VN+P + +G+ S V+VGR R+TPI+ ++ ++ Sbjct: 292 AERSRIWAKER--DNVVFVNVPGYEVTYWHDGQPLFESKVVVGRASRKTPIMTGTLDSVI 349 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFI 297 NP W +P I+ KD++ ++++P YL ++NI +I + ++W + P F Sbjct: 350 LNPTWNVPWKIMVKDIIPKVKRNPMYLMEHNIQIIRSWTSREIIDPTTINWATVNPRTFP 409 Query: 298 FR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 +R Q G NA+ K + Y+HDTP LF R +SGCVRV N L Sbjct: 410 YRMRQASGSHNALGLYKFNMPNPQAIYLHDTPSKNLFQQDRRAFSSGCVRVENADQLAEL 469 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L K R + TT V L +PVH +Y +AW ++ + +RDDIY D Sbjct: 470 LFKTQGLEERLEKKRESARSSTTSVPLGERIPVHIIYQTAWL-EEGTLYYRDDIYKYD 526 >gi|262393898|ref|YP_003285752.1| L,D-transpeptidase YcbB [Vibrio sp. Ex25] gi|262337492|gb|ACY51287.1| L,D-transpeptidase YcbB [Vibrio sp. Ex25] Length = 513 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 105/418 (25%), Positives = 180/418 (43%), Gaps = 39/418 (9%) Query: 6 KINKILYCFFVYLILPM----GLSLVEKPIHASVLDEIINESYHSIVNDR-FDNFLARVD 60 + L+ ++ILP LS++ I L + + + D F + + + Sbjct: 122 EGINWLFANKAHVILPAPSIDTLSVLSNEITVGKLSQFLASLRSPLQTDEAFYSAYSSLS 181 Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 PI + +A +G+ + L ER+ + Sbjct: 182 EHAKYQYPIYEQTGLA--------------------------RVGDQLENKPLLIERMEV 215 Query: 121 SG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 G D+ + +D +E AVK FQ HGL G++ +T+ +N R+ L +N Sbjct: 216 VGVDVSYLDITTQQYDEELELAVKEFQRIHGLKEDGVIGPNTIRWINFSPQERLHLLALN 275 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R + + + V VN+P + +G+ S V+VGR R+TPI+ ++ ++ Sbjct: 276 SERSRIWSKDR--DNVVFVNVPGYEVTYWHDGQPLFESKVVVGRASRKTPIMSGTLDSVI 333 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEEVDWNSPEPPNFI 297 NP W +P +I+ KD++ ++++P YL ++NI +I + + ++W + P F Sbjct: 334 LNPTWNVPWTIMVKDIIPKVKRNPMYLINHNIQIIRSWTSNEIIDPTTINWATVNPRTFP 393 Query: 298 FR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 +R Q G NA+ K + Y+HDTP LF R +SGCVRV + L Sbjct: 394 YRMRQASGLHNALGLYKFNMPNPQAIYLHDTPSKNLFERDRRAFSSGCVRVEHADQLAEL 453 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L K R + R T V L + VH +Y +AW ++ + +RDDIY D Sbjct: 454 LFKTQGLEERLAKKRESTRRSNTSVPLGERIQVHIIYQTAWL-EEGTLYYRDDIYKYD 510 >gi|238757635|ref|ZP_04618819.1| Peptidoglycan-binding domain 1 protein [Yersinia aldovae ATCC 35236] gi|238704140|gb|EEP96673.1| Peptidoglycan-binding domain 1 protein [Yersinia aldovae ATCC 35236] Length = 603 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 147/297 (49%), Gaps = 8/297 (2%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 + + + + +AVK FQ GL G++ T E +NV R L +N+ R+ Sbjct: 294 ITTTPITDNVYTPELVAAVKRFQQWQGLTDDGVIGVRTREWLNVSPQTRATLLALNIQRL 353 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + L ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP Sbjct: 354 RILPGHV--DNGIMVNIPNYSLNYYKNGTQVLSSRVIVGRPSRKTPLMSSALNNVVVNPP 411 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF-- 298 W +P S++++D++ R D Y + + ++ + V +DW+ P NF + Sbjct: 412 WNVPTSLVRQDIVPKARYDSGYFQRHGYTVLSGWSNDAQVVDPSMIDWSMISPNNFPYRL 471 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 RQ PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+ Sbjct: 472 RQAPGSSNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANMLLQ 531 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 D W+ + +K TT V + +PV Y++AW +D QFR DIY D Sbjct: 532 DA-GWNDARVSSTLKQGDTTYVNIRQRIPVQLYYLTAWVAEDGKPQFRTDIYNYDKT 587 >gi|260363711|ref|ZP_05776495.1| putative amidase [Vibrio parahaemolyticus K5030] gi|260879722|ref|ZP_05892077.1| putative amidase [Vibrio parahaemolyticus AN-5034] gi|260898804|ref|ZP_05907245.1| putative amidase [Vibrio parahaemolyticus Peru-466] gi|260901617|ref|ZP_05910012.1| putative amidase [Vibrio parahaemolyticus AQ4037] gi|308086665|gb|EFO36360.1| putative amidase [Vibrio parahaemolyticus Peru-466] gi|308093310|gb|EFO43005.1| putative amidase [Vibrio parahaemolyticus AN-5034] gi|308108675|gb|EFO46215.1| putative amidase [Vibrio parahaemolyticus AQ4037] gi|308113388|gb|EFO50928.1| putative amidase [Vibrio parahaemolyticus K5030] Length = 513 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 105/418 (25%), Positives = 180/418 (43%), Gaps = 39/418 (9%) Query: 6 KINKILYCFFVYLILPM----GLSLVEKPIHASVLDEIINESYHSI-VNDRFDNFLARVD 60 + L+ ++ P LS++ I LD+ + + ++ F+ A + Sbjct: 122 EGVNWLFANKAHVSFPAPSVDTLSVLSNEITVGKLDQFLASLRSPLQMDASFNTVFASLS 181 Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 P ++ ++ +G+ + L ER+ I Sbjct: 182 EFSQYQYPFYEQKGLS--------------------------RVGDPIENKSTLVERMAI 215 Query: 121 SG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 G D+ +D +E AVK FQ HGL+ G++ +T+ +N R+ L +N Sbjct: 216 VGVDVSYIDSEIPQYDENLELAVKEFQRIHGLNQDGVIGPNTIRWINFSPQQRLHLLALN 275 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R + +++ V VN+P + +G+ S V+VGR R+TPI+ ++ ++ Sbjct: 276 AERSRIWAKER--DNVVFVNVPGYEVTYWHDGQPLFESKVVVGRASRKTPIMTGTLDSVI 333 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFI 297 NP W +P I+ KD++ ++++P YL ++NI +I + ++W + P F Sbjct: 334 LNPTWNVPWKIMVKDIIPKVKRNPMYLMEHNIQIIRSWTSREIIDPTTINWATVNPRTFP 393 Query: 298 FR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 +R Q G NA+ K + Y+HDTP LF R +SGCVRV N L Sbjct: 394 YRMRQASGSHNALGLYKFNMPNPQAIYLHDTPSKNLFQQDRRAFSSGCVRVENADQLAEL 453 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L K R + TT V L +PVH +Y +AW ++ + +RDDIY D Sbjct: 454 LFKTQGLEERLEKKRESARSSTTSVPLGERIPVHIIYQTAWL-EEGTLYYRDDIYKYD 510 >gi|153839457|ref|ZP_01992124.1| putative amidase [Vibrio parahaemolyticus AQ3810] gi|149747014|gb|EDM58002.1| putative amidase [Vibrio parahaemolyticus AQ3810] Length = 509 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 105/418 (25%), Positives = 180/418 (43%), Gaps = 39/418 (9%) Query: 6 KINKILYCFFVYLILPM----GLSLVEKPIHASVLDEIINESYHSI-VNDRFDNFLARVD 60 + L+ ++ P LS++ I LD+ + + ++ F+ A + Sbjct: 118 EGVNWLFANKAHVSFPAPSVDTLSVLSNEITVGKLDQFLASLRSPLQMDASFNTVFASLS 177 Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 P ++ ++ +G+ + L ER+ I Sbjct: 178 EFSQYQYPFYEQKGLS--------------------------RVGDPIENKSTLVERMAI 211 Query: 121 SG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 G D+ +D +E AVK FQ HGL+ G++ +T+ +N R+ L +N Sbjct: 212 VGVDVSYIDSEIPQYDENLELAVKEFQRIHGLNQDGVIGPNTIRWINFSPQQRLHLLALN 271 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R + +++ V VN+P + +G+ S V+VGR R+TPI+ ++ ++ Sbjct: 272 AERSRIWAKER--DNVVFVNVPGYEVTYWHDGQPLFESKVVVGRASRKTPIMTGTLDSVI 329 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFI 297 NP W +P I+ KD++ ++++P YL ++NI +I + ++W + P F Sbjct: 330 LNPTWNVPWKIMVKDIIPKVKRNPMYLMEHNIQIIRSWTSREIIDPTTINWATVNPRTFP 389 Query: 298 FR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 +R Q G NA+ K + Y+HDTP LF R +SGCVRV N L Sbjct: 390 YRMRQASGSHNALGLYKFNMPNPQAIYLHDTPSKNLFQQDRRAFSSGCVRVENADQLAEL 449 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L K R + TT V L +PVH +Y +AW ++ + +RDDIY D Sbjct: 450 LFKTQGLEERLEKKRESARSSTTSVPLGERIPVHIIYQTAWL-EEGTLYYRDDIYKYD 506 >gi|270261208|ref|ZP_06189481.1| hypothetical protein SOD_a04330 [Serratia odorifera 4Rx13] gi|270044692|gb|EFA17783.1| hypothetical protein SOD_a04330 [Serratia odorifera 4Rx13] Length = 611 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 97/309 (31%), Positives = 151/309 (48%), Gaps = 9/309 (2%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P A+ + VK FQ GL G++ + T E +NV R L +N+ R++ Sbjct: 304 PVTVTDNAYTPDLVEGVKRFQKWQGLTADGVIGARTREWLNVSPQTRASLLALNIQRLRI 363 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L ++VNIP SL +NG L S VIVGR R+TP+++S +N ++ NP W Sbjct: 364 LPGYV--DTGIMVNIPNYSLTYYQNGNEVLSSRVIVGRPSRKTPLMNSALNNVVVNPPWN 421 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQ 300 +P +++++D++ +D Y + + ++ + + +DWN NF + RQ Sbjct: 422 VPTTLVREDIVPKAMRDGSYFQKHGYTVLSGWSNDAEVINPAMIDWNMVSARNFPYRIRQ 481 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 482 APGATNSLGRFKFNMPSSDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASDLANMLLQDA 541 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-VHVGI 419 W+ + +K TT V + +PV Y++AW D QFR DIY D+ V G Sbjct: 542 -GWNNTRVSSTLKGGNTTYVNIRQHIPVKLYYLTAWVSDDGKPQFRTDIYNYDDTVRSGA 600 Query: 420 IPLPEDHPI 428 L + + Sbjct: 601 QILAQAEKL 609 Score = 44.1 bits (103), Expect = 0.050, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 33/141 (23%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ N LY Y + + +IN+ ++ + Sbjct: 130 MLGYLQFVSAIGANGNSWLYSNIPYKLGL-------------PPNAVINQWQLAVRQGKT 176 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSV 111 ++ ++ A+ +A+ + WP++ P L S + Sbjct: 177 LAYVTKLAPQ---------HPQYAKMHQALRDM--LADNRPWPQMANGPSLRPDQLSSDI 225 Query: 112 QRLRERLIISGDLDPSKGLSV 132 LRE L +G L + + Sbjct: 226 AALREILARNGMLTAASVQTQ 246 >gi|311747883|ref|ZP_07721668.1| peptidoglycan binding domain-containing protein [Algoriphagus sp. PR1] gi|126575877|gb|EAZ80187.1| peptidoglycan binding domain-containing protein [Algoriphagus sp. PR1] Length = 562 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 102/341 (29%), Positives = 171/341 (50%), Gaps = 6/341 (1%) Query: 94 WPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA-FDAYVESAVKLFQMRHGL 151 W ++ + L +G+ + SV +LRERL G LD + FD+ + +K +Q+ +G+ Sbjct: 221 WKQVSFEQSLKVGDRNQSVPKLRERLQFWGFLDTYETEDELLFDSTMWEGLKKYQIENGM 280 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 P G + T +N + I VN+ R++ L E VLVNI L+ ++ G Sbjct: 281 KPDGAIGDLTAGFLNDSPEKLIDIASVNMERMRWLPEINWDEELVLVNIANYQLDYLDKG 340 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 L + VIVG+ ++P+ + ++ I+F+PYW IP SI Q +++ L+++ YL++ N+ Sbjct: 341 DTTLSAKVIVGKEYNESPVFSAPMSYIVFSPYWNIPSSITQDEILPSLKKNKAYLQEKNM 400 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 ++ G+ + +V+W + F F RQ PG N++ K F + N Y+HDTP Sbjct: 401 EVVSNTGEVLDPNKVNWKEKDGEEFPFRIRQKPGGSNSLGLVKFMFPNDYNIYIHDTPAR 460 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF R + GC+R++ LL+D W+ I E + VKL EVPV Sbjct: 461 SLFQRESRALSHGCIRIQYPDQFAKSLLRD-KKWTTEKISEAMHQENEEVVKLNREVPVL 519 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP-LPEDHPID 429 +Y++ W+ FR DIY D + + P+ I+ Sbjct: 520 LLYLTFWTDDKGQGHFRPDIYNRDAELLKALRSAPKAESIE 560 >gi|89068811|ref|ZP_01156194.1| hypothetical protein OG2516_03630 [Oceanicola granulosus HTCC2516] gi|89045581|gb|EAR51644.1| hypothetical protein OG2516_03630 [Oceanicola granulosus HTCC2516] Length = 550 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 110/350 (31%), Positives = 178/350 (50%), Gaps = 8/350 (2%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 + + +A Q L+ GG+ L G + V LR+RL G L PS Sbjct: 187 APTSPEYQRLLRARMEMQRQLNAGGYGPTVSASLERGATGEQVVALRDRLTAMGFLAPS- 245 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 +S+ FDA +E+AV+ FQ+ GL G+V +TL+A+NVP++ R+R + V + R + + Sbjct: 246 -VSMEFDAALEAAVRRFQVSVGLTADGVVGGATLDAINVPLEERLRMVLVAMERERWMNN 304 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVI 246 + G R++ VN+ + V+ G V R+ ++G DRQTP ++ ++ NP W + Sbjct: 305 LERGQRHIWVNLVDYTAAVVDEGHVTFRTKSVIGAGDADRQTPEFSDVMDHMVINPSWYV 364 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGK 304 PRSI + + LR++ + ++ +ID G+ V V+++ F + RQ PG Sbjct: 365 PRSITVNEYLPSLRRNRNAVS--HLQVIDRNGRVVNRNSVNFSQYNARTFPYSMRQPPGS 422 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 NA+ K F +R N Y+HDTP LF+ VR + GC+R+ + + LL Sbjct: 423 SNALGQVKFMFPNRYNIYLHDTPSQHLFSETVRTFSHGCIRLDDPYEFAHALLAAQEDDP 482 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + + T V L T VPVH VY +A++ D ++ FR D YG D Sbjct: 483 VGFFQTRLDSGNETRVNLETPVPVHLVYRTAFTTADGVVNFRPDAYGRDG 532 >gi|146302694|ref|YP_001197285.1| hypothetical protein Fjoh_4967 [Flavobacterium johnsoniae UW101] gi|146157112|gb|ABQ07966.1| hypothetical lipoprotein [Flavobacterium johnsoniae UW101] Length = 523 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 104/374 (27%), Positives = 181/374 (48%), Gaps = 28/374 (7%) Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI----RPLHLGNSS 108 D+ + + D + S + A+ Y++I GGW + I + L LG+SS Sbjct: 171 DSIFEKSTINDDKKSKMFS--QYYKLRDALKRYREIEKNGGWKTIEIDDAYKSLKLGDSS 228 Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V ++RERL I+ D+ S D+ + +K +++ HG P + + +N+P Sbjct: 229 PIVSQIRERLFITQDIK-EDNKSAVCDSTLIKGLKSYELHHGFAPKNTILPEHITDLNIP 287 Query: 169 VDLRIRQLQVNLMRIKKLLEQ-KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 V RI+ + VN+ R + + + + G +Y+ VNIP L + + ++ S V+VG+ + Sbjct: 288 VSDRIKTIIVNMERCRWIDPKLEKGQQYIEVNIPEFKLYLIRDRQIAFTSPVVVGKAMTK 347 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 T I ++ I+F+PYW +P SII K++ + ++ YL N+ Sbjct: 348 TVIFSGTMSNIVFSPYWNVPPSIIAKEIKPGMAKNKNYLAQKNLE--------------- 392 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 WN N RQ PGK N++ K F + +N Y+HDTP LF R + GCVRV Sbjct: 393 WN-----NGAVRQLPGKNNSLGLVKFLFPNSSNIYLHDTPSKSLFERESRAFSHGCVRVA 447 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 +L + +LK+ P W+ I++ + K + + + PV+ Y +AW ++ + F Sbjct: 448 KPRELAIEILKEDPKWTEARIDKAMHAGKESWYTIKKKFPVYIGYFTAWVDREGNLNFYK 507 Query: 408 DIYGLDNVHVGIIP 421 DIY D + ++ Sbjct: 508 DIYQRDESLLKLLT 521 >gi|326795030|ref|YP_004312850.1| ErfK/YbiS/YcfS/YnhG family protein [Marinomonas mediterranea MMB-1] gi|326545794|gb|ADZ91014.1| ErfK/YbiS/YcfS/YnhG family protein [Marinomonas mediterranea MMB-1] Length = 562 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 95/400 (23%), Positives = 190/400 (47%), Gaps = 14/400 (3%) Query: 41 NESYHSIVNDRFDNFLARVDMGIDSDIPIISK--ETIAQTEKAIAFYQDILSRGGWPELP 98 N + D + + + +P+++ +K + +YQ++ + ++ Sbjct: 166 NWQLDAPSEDWKNILWLSSATDMVNSLPLLAPRHPHYQILQKWLVYYQELADKEPDIKVN 225 Query: 99 IR-PLHLGNSSVSVQRLRERLIISGDL--DPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + PL LG+ V +LR RLI GD+ K FD ++ A+ FQ RH L G Sbjct: 226 VGVPLTLGDEGPRVAQLRARLIQLGDIRFSTRKVNEDQFDERLKDALINFQRRHHLTADG 285 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 S T++ +N+P+ R++Q+ NL R + L ++ + V++ + NG+ Sbjct: 286 AAGSKTIQTLNIPLKERVKQINYNLERWR-WLPSRLEADRIWVDLTDYKVHTHLNGETQ- 343 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 V++G+ R+TP+ + ++ ++ NP W +P I +++++ ++++P YL + + Sbjct: 344 SMRVVIGKPARKTPVFYGKMTYMVTNPTWRVPHRIARENLLPKIKENPDYLAKHGYKVFA 403 Query: 276 EKG---KEVFVEEVDWNSPEPPN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 K++ ++W + + + F Q+ NA+ K F ++N+ Y+HDTP Sbjct: 404 NWSASAKQLDPTTINWKAIDQSKLSYRFEQNADDGNALGLYKFMFPNKNDIYLHDTPAKH 463 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 LF V R +SGCVR+ + + LL+ + S + E + + +T + L +PV+ Sbjct: 464 LFKEVDRAYSSGCVRLEHPDEFAELLLE--GSDSEDKMNEAMNSGETKVITLPQYLPVYL 521 Query: 391 VYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPIDS 430 VY + + + +FR+D+Y D + + P DS Sbjct: 522 VYFTVVPNDNGMPEFRNDVYKRDKLMEEAMGYAPFSPSDS 561 >gi|126666378|ref|ZP_01737357.1| hypothetical protein MELB17_12356 [Marinobacter sp. ELB17] gi|126629179|gb|EAZ99797.1| hypothetical protein MELB17_12356 [Marinobacter sp. ELB17] Length = 566 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 115/381 (30%), Positives = 182/381 (47%), Gaps = 20/381 (5%) Query: 56 LARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP--LHLGNSSVSVQR 113 R + P + + +A+Y++I GGW +LP RP L G+ V Sbjct: 161 AQRFEQAFSLARPYPAP--YQRLRAGLAYYRNIQLEGGWQQLPQRPQSLRPGDVDADVPL 218 Query: 114 LRERLIISGDLDPSKGLSVA-----------FDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 LR+RL + G L +S +D + AV+LFQ H L+ G+V T Sbjct: 219 LRQRLAMIGGLGLQNAMSAVQPEEQTATLLEYDEAMVGAVRLFQRHHLLEADGIVGQQTR 278 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 A NV VD RI Q++ NL R + LL + ++LV+I + RS ++VG Sbjct: 279 NAFNVSVDERINQIRANLERARWLLHGE-ASAFILVDIAGYRISYFRPNGEIWRSRIVVG 337 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + R TP L S I + NP W +P +I ++D + +R D YL N+ ++D +G+ + Sbjct: 338 QPYRSTPSLRSEITHLTVNPTWTVPPTIYREDSLPKIRDDIGYLYRQNMSVLDLRGQRLD 397 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 +++DW P + + RQ PG +NA+ + F + + Y+HDTP LF R +SG Sbjct: 398 PQQIDWW--NPGSIMLRQGPGPMNALGQLVLRFPNNHLVYLHDTPAQALFGRQQRAFSSG 455 Query: 343 CVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 C+RV+ I +L L DT + ++ ++ T T +KL +PV Y + +D Sbjct: 456 CIRVQGITELAQLLFDDT--DTAADVKALIATGDTRNIKLRRTMPVILHYWTVHPGEDGE 513 Query: 403 IQFRDDIYGLDNVHVGIIPLP 423 + FR DIY D + P Sbjct: 514 LVFRPDIYQQDARLQKALDQP 534 >gi|121592583|ref|YP_984479.1| peptidoglycan-binding domain-containing protein [Acidovorax sp. JS42] gi|120604663|gb|ABM40403.1| Peptidoglycan-binding domain 1 protein [Acidovorax sp. JS42] Length = 533 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 121/423 (28%), Positives = 183/423 (43%), Gaps = 20/423 (4%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDR--FDNFLARVDMGIDSDIPIISKETIAQTEKAIA 83 L I + L+E + S + R LA + D I +A Sbjct: 100 LHGGRIDPARLNERYDHSRRPQPDLRAALQTALADGQIQQARDAAIPRVPMYPALRALLA 159 Query: 84 FYQDILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDP-------SKGLSV 132 Y+ + + W P LP R L G + L ERL+ GDL P + Sbjct: 160 QYRAMGAHPAWAQPLPALPGRKLTPGQPWEGLGVLAERLVALGDLPPQPTGEPPAASAPA 219 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 + + AV FQ RHGL+ G++ ++TL A+NVP R Q+ + + R++ G Sbjct: 220 QYAPALVEAVTAFQRRHGLEADGVLGATTLAALNVPPAARAEQIALQMERLR-WTPVLQG 278 Query: 193 LRYVLVNIPAASLEAVE--NGKVGLR--STVIVGRV-DRQTPILHSRINRIMFNPYWVIP 247 R + VN+P L A E G++ LR VIVG+ D +TP+ + I F+PYW IP Sbjct: 279 PRMIAVNVPEYRLRAYEYAGGRITLRLSMAVIVGKALDTRTPLFDEDMQSIEFSPYWNIP 338 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI + +++ LR+DP YL + + G + RQ PG +NA Sbjct: 339 PSIARGEIVPRLRRDPGYLARQGMEFVSAAGVSTDATPEMLGAVLAGQARIRQRPGPLNA 398 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K + +N Y+H T P LF R + GCVRV + L ++L+D PTW+ Sbjct: 399 LGDIKFVLPNNDNIYLHHTSAPTLFGRSRRDLSHGCVRVEEPVALAQFVLQDDPTWTVER 458 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 I + K V+L VPV +I+ +D F D+YG D ++ P Sbjct: 459 IRAAMAQPKPVFVRLPHPVPVIITHITVVV-QDGRPHFYGDLYGHDRKLASLLRQHSAKP 517 Query: 428 IDS 430 D+ Sbjct: 518 YDA 520 >gi|322832248|ref|YP_004212275.1| ErfK/YbiS/YcfS/YnhG family protein [Rahnella sp. Y9602] gi|321167449|gb|ADW73148.1| ErfK/YbiS/YcfS/YnhG family protein [Rahnella sp. Y9602] Length = 616 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 94/307 (30%), Positives = 149/307 (48%), Gaps = 9/307 (2%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P + + AVK FQ GL+ G++ T + +N LR L +N+ R++ Sbjct: 309 PVAVADNQYTPDLVEAVKRFQKWQGLEADGIIGGRTRQWLNASPQLRATLLALNIQRLRI 368 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L ++VNIP L NG L S VIVGR R+TP++ S +N ++ NP W Sbjct: 369 LPGNV--NTGIMVNIPNYQLTYYLNGNEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWN 426 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQ 300 +P +++++D++ +P Y + + ++ + + +DW P +F + RQ Sbjct: 427 VPTTLVREDIVPKAMNNPGYFQQHGYQVLSGWSNDAEVIDPSMIDWAMISPNHFPYRIRQ 486 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S + Y+HDTP LF+ +R +SGCVRV +L LL+D Sbjct: 487 APGVSNSLGRYKFNMPSSDAIYLHDTPNHNLFSKDIRALSSGCVRVNKASELANMLLQDA 546 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-VHVGI 419 W+ I ++ TT V + +PV Y++AW D QFR DIY D+ V G Sbjct: 547 -GWNDTRISSALQGGNTTYVAIRHHIPVKLFYLTAWVADDGKPQFRTDIYNYDSTVRSGA 605 Query: 420 IPLPEDH 426 LP+ Sbjct: 606 QILPQAE 612 Score = 37.1 bits (85), Expect = 5.7, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 33/142 (23%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ +K LY Y + L +IN+ ++ Sbjct: 130 MLGYLQFTSSVEANGDKWLYSATPYKMTTPSL-------------TVINQWQLAVRQGNT 176 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 ++L+ + + A+ + WP + L S V Sbjct: 177 SHYLSTLAPQ---------HPYYTKMHDALKIM--LTDNRPWPVMTGSASLRPDQISDDV 225 Query: 112 QRLRERLIISGDLDPSKGLSVA 133 LRE L +G + S + Sbjct: 226 PALREILTRTGMMVASPEENKV 247 >gi|152995955|ref|YP_001340790.1| peptidoglycan-binding domain-containing protein [Marinomonas sp. MWYL1] gi|150836879|gb|ABR70855.1| Peptidoglycan-binding domain 1 protein [Marinomonas sp. MWYL1] Length = 556 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 103/422 (24%), Positives = 193/422 (45%), Gaps = 16/422 (3%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK--ETIA 76 + L ++D N + N+ D + + +P+++ Sbjct: 140 LTSYAHDLSNGRYEPQLIDP--NWQLDAPNNNWKDLLYLNSATDMVNSLPLLAPRSPQYQ 197 Query: 77 QTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDL--DPSKGLSVA 133 +K + +YQD+ ++ + PL G+ V +LR RL+ GD+ K Sbjct: 198 VLQKWLVYYQDLAAKEKDIFVSAGVPLSAGDEGPRVAQLRARLVQLGDIRFSTRKVNEEQ 257 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 FD ++ A+ FQ RH + G S T++ +NVP+ R +Q+ NL R + L ++ Sbjct: 258 FDIRLKEALIRFQQRHHITADGAAGSKTIQMLNVPLKTRAKQIAYNLERWR-WLPSELEA 316 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 + V++ +++ NG++ ++G+ DR+TP+ + ++ NP W +P I ++ Sbjct: 317 NRIWVDLTNYTVDMYLNGELT-SMKAVIGKPDRKTPVFKGLMTYMVTNPTWRVPHRIARE 375 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPN--FIFRQDPGKINAM 308 +++ L+ DP YL + + KE+ +++W + F F Q P + NA+ Sbjct: 376 NLLPKLQADPNYLVKHGYKVYSSWSIGAKELDSTKINWKAINEDKLAFRFEQKPDEGNAL 435 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K F ++N Y+HDTP LF R +SGCVR+ N + + K + ++ + Sbjct: 436 GQFKFMFPNKNEIYLHDTPAKHLFREEDRAFSSGCVRLENPTEFAKEITKGSKQFND--M 493 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPI 428 +KT T + L T +PV+ VY + + +++FR+DIY D + + P Sbjct: 494 NNSLKTGSNTVITLPTYIPVYLVYFTVVPNANGMLEFRNDIYERDALMEEAMGYSAFGPR 553 Query: 429 DS 430 DS Sbjct: 554 DS 555 >gi|171056700|ref|YP_001789049.1| peptidoglycan-binding domain-containing protein [Leptothrix cholodnii SP-6] gi|170774145|gb|ACB32284.1| Peptidoglycan-binding domain 1 protein [Leptothrix cholodnii SP-6] Length = 516 Score = 394 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 104/375 (27%), Positives = 169/375 (45%), Gaps = 14/375 (3%) Query: 57 ARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW----PELPIRPLHLGNSSVSVQ 112 R+ + P + Q +A+A Y+ + W P L R L + + Sbjct: 141 QRLPQAVREAAPRL--PLYEQLRQALAQYRALGEHPAWAQKLPPLRGRKLEPLQAWDGLP 198 Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 L RL + GDL + V + + +AV+ FQ RHGL G+V +TL A+ V R Sbjct: 199 LLAGRLQVLGDLPADVPVPVRHEGALVAAVQAFQRRHGLGDDGVVGRATLAALAVTPAQR 258 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE--NGK--VGLRSTVIVGRV-DRQ 227 RQ+ + L R++ ++G R ++VN+P L A E + + V L VIVG+ D Sbjct: 259 ARQIALTLERLR-WTPLQLGPRMIVVNVPEFVLRAYETRDDRIDVRLEMKVIVGKALDTP 317 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK-EVFVEEV 286 TP+ + I F+PYW +PRSI +++ L+ +P Y + G+ + Sbjct: 318 TPLFTEEMRFIEFSPYWNVPRSIAGAELVPRLQSEPAYFTRQGFEFVGRDGRVSAGFGDE 377 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 ++ RQ PG NA+ K F + + Y+H TP P LF R + GC+RV Sbjct: 378 QLDAVLRGELRIRQRPGPNNALGDIKFVFPNNDAIYLHHTPSPGLFERDRRDFSHGCIRV 437 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 + + L ++L+D P W I E + ++ ++L VPV Y + + F Sbjct: 438 QEPVALAKFVLQDQPGWDEARIVEAMARGQSRTLRLDRPVPVLIAYGTVLV-RQGRPHFL 496 Query: 407 DDIYGLDNVHVGIIP 421 D+YG D + + Sbjct: 497 ADVYGNDQLLDEALR 511 >gi|312971055|ref|ZP_07785234.1| cell wall degradation protein [Escherichia coli 1827-70] gi|310336816|gb|EFQ01983.1| cell wall degradation protein [Escherichia coli 1827-70] gi|323165398|gb|EFZ51185.1| cell wall degradation protein [Shigella sonnei 53G] Length = 317 Score = 394 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 99/293 (33%), Positives = 151/293 (51%), Gaps = 7/293 (2%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 P+ + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ Sbjct: 10 KPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLR 69 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L + ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 70 LLPTEL--STGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPW 127 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--Q 300 +P ++ +KD++ +R DP YL+ + ++ + +VDW++ N FR Q Sbjct: 128 NVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQ 187 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 188 APGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDA 247 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 248 -GWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYD 299 >gi|304415070|ref|ZP_07395810.1| peptidoglycan binding domain-containing hypothetical protein [Candidatus Regiella insecticola LSR1] gi|304283074|gb|EFL91497.1| peptidoglycan binding domain-containing hypothetical protein [Candidatus Regiella insecticola LSR1] Length = 421 Score = 394 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 107/424 (25%), Positives = 180/424 (42%), Gaps = 33/424 (7%) Query: 12 YCFFVYLILPMGLSLV--EKPIHASVLDE-IINESYHSIVNDRFDNFLARVDMGIDSDIP 68 Y FV + G + + + P + +N ++ ++A + Sbjct: 4 YLHFVANVAAQGETWLYDDSPYKMGIPPTVFLNRWQQTLQQGNIAEYMASLTPQ------ 57 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISG----- 122 + + WP+LP L G V++ L + L + Sbjct: 58 ---HPQYKNMRQVLKKLLS-EQHQPWPQLPNGSNLIPGKRDVNLPILHKILSHANTWLTA 113 Query: 123 -----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 DL P + ++ + +AVK FQ GL P G++ + T + +N+ R L Sbjct: 114 TTPVTDLPP-PSVDTLYNPALVAAVKRFQQAQGLTPDGIIGTGTRKWLNLSPQKRATLLA 172 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 +N+ R++ L ++VNI SL + G L S VIVGR R+TP + S ++ Sbjct: 173 LNMQRLRILPADM--KTGIMVNIADYSLHYYQEGNEILSSAVIVGRPSRKTPFMSSALSN 230 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPP 294 ++ NP W +P S+++ D++ ++ D YLK + ++ + ++W+ Sbjct: 231 VVINPQWKVPTSMVKNDILPKVKYDATYLKQHGYTILTNWNNNAKIIDPSTINWHLISAN 290 Query: 295 NFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 NF + RQ PG N++ K S ++ Y+HDTP LF +SGCVRV L Sbjct: 291 NFPYRLRQAPGTNNSLGRYKFNMPSSDSIYLHDTPNHRLFQKETLALSSGCVRVHKAAIL 350 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LLKD W + +K TT V + +PV Y+++W K+ +QFR DIY Sbjct: 351 AKMLLKDA-GWDDTRLSNTLKQGNTTYVNIRQHLPVLLYYLTSWVDKEGKVQFRTDIYNY 409 Query: 413 DNVH 416 D Sbjct: 410 DTAA 413 >gi|157369969|ref|YP_001477958.1| hypothetical protein Spro_1726 [Serratia proteamaculans 568] gi|157321733|gb|ABV40830.1| Peptidoglycan-binding domain 1 protein [Serratia proteamaculans 568] Length = 613 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 96/310 (30%), Positives = 150/310 (48%), Gaps = 9/310 (2%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 P + + VK FQ GL G++ T E +NV +R L +N+ R++ Sbjct: 305 SPVTVTDNRYTPDLVEGVKRFQKWQGLSADGVIGVRTREWLNVTPQIRASLLALNIQRLR 364 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP W Sbjct: 365 ILPGHV--DTGIMVNIPNYSLTYYQNGNEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPW 422 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--R 299 +P +++++D++ +D Y + + ++ + + +DW+ P NF + R Sbjct: 423 NVPTTLVREDIVPKAMRDGSYFQKHGYTVLSGWSNDAEVINPAMIDWSMISPRNFPYRIR 482 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 483 QAPGATNSLGRFKFNMPSSDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASDLANMLLQD 542 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-VHVG 418 W+ + +K TT V + +PV Y++AW D QFR DIY D+ V G Sbjct: 543 A-GWNNTRVSSTLKQGNTTFVNIRQHIPVKLYYLTAWVSDDGKPQFRTDIYNYDDTVRSG 601 Query: 419 IIPLPEDHPI 428 L + + Sbjct: 602 AQILAQAEKL 611 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 35/147 (23%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ N LY Y + + +IN+ ++ + Sbjct: 130 MLGYLQFVSSIGANGNNWLYSNIPYKLGL-------------PPNTVINQWQLALRQGKT 176 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG-GWPELPIRP-LHLGNSSVS 110 ++ + A+ +A+ +D+L+ G WP++ P L S Sbjct: 177 LAYVNTLAPQ---------HPQYAKMHQAL---RDMLADGRPWPQMANGPSLRPDQLSSD 224 Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAY 137 + LRE L +G L PS D Sbjct: 225 IPALREILARNGMLTPSTAPVEVQDPP 251 >gi|304310214|ref|YP_003809812.1| hypothetical protein HDN1F_05650 [gamma proteobacterium HdN1] gi|301795947|emb|CBL44148.1| conserved hypothetical protein [gamma proteobacterium HdN1] Length = 560 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 103/360 (28%), Positives = 174/360 (48%), Gaps = 8/360 (2%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 + A+A Y+++ + LP + L G++ + L + L GD + + Sbjct: 197 YDHLKNALAHYRELAAHRKGISLPSLPKSLKPGDTWSGIPALADGLRYLGDFTGAPPKNN 256 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 + + + VK FQ HGL G++ ST A++VP +R+RQ+++++ R++ L EQ Sbjct: 257 RYTHDLVAGVKHFQGGHGLGVDGIIGQSTWSALSVPFSVRVRQIELSMERMRWLSEQMAD 316 Query: 193 LRYVLVNIPAASLEAVENGKVG--LRSTVIVGR-VDRQTPILHSRINRIMFNPYWVIPRS 249 R ++VNIP L A L V+VG+ V TPIL + + ++FNPYW +P S Sbjct: 317 ERAIVVNIPQFQLWAFPGKTQASSLSMNVVVGKSVGNSTPILLNDVKSVVFNPYWNVPSS 376 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF--VEEVDWNSPEPPNFIFRQDPGKINA 307 I +K+M+ LR++P+YL N+ M+ G+ + + + RQ PG NA Sbjct: 377 ITRKEMLPKLRENPEYLVSQNLEMV-GNGEVIATAPTPEQIEAISKGIYRLRQRPGPGNA 435 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K EF + + YMHDTP F+ R + GC+R+ + + +LL P W + Sbjct: 436 LGRVKFEFPNSDAIYMHDTPNRGAFSRSRRDFSHGCIRLSDPEKMADFLLTGQPGWDKKR 495 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 + E +K+ + V L VPV Y +A +DIYG D+ + ++ Sbjct: 496 VSEAMKSDERRTVTLRNPVPVLIFYTTAMVDSTGRTVLLEDIYGYDSQLERALIASDERK 555 >gi|217970214|ref|YP_002355448.1| ErfK/YbiS/YcfS/YnhG family protein [Thauera sp. MZ1T] gi|217507541|gb|ACK54552.1| ErfK/YbiS/YcfS/YnhG family protein [Thauera sp. MZ1T] Length = 549 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 108/374 (28%), Positives = 176/374 (47%), Gaps = 6/374 (1%) Query: 56 LARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRL 114 + +D+ P + + Q L+ G WP++ P L G SS V L Sbjct: 178 APDLAAAVDAYAPDL--PLYRALRAELLAQQGRLAVGDWPKVAAGPTLKPGASSSRVASL 235 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 R RL +G+ +D + AVK FQ HGL G++ + TLEA+N R+ Sbjct: 236 RARLAAAGERVSEARDKSHYDEALVEAVKRFQAAHGLQADGVLGAQTLEALNASPAQRVA 295 Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 Q++ NL R++ + G R +LV+I + V +G+ S VIVG+ R+TP L Sbjct: 296 QIRANLERLRWVASDLQGDR-LLVDIVGYHADLVLDGQPVWSSRVIVGKPKRRTPSLLDS 354 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 + ++ NP WV+P +I+++D++ ++P YL + + ++D G+ V +DW+ Sbjct: 355 VTHLVLNPKWVVPPTILREDVIPGAARNPSYLANRRLRVVDRSGQTVDPATIDWSGARQS 414 Query: 295 NFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 F +R Q G ++ K + Y+HDT LF R +SGCVRV +L Sbjct: 415 GFPYRVEQQSGADGSLGRIKFSLSNPYVIYLHDTNARSLFKRAERALSSGCVRVEKPEEL 474 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 V LL D+ WS ++ + + +T V + +V V Y +A + + R+DIYG Sbjct: 475 AVLLLADSGRWSAQALQAALDSGRTRTVDVGRDVKVLLHYATAALDEAGRVLLRNDIYGY 534 Query: 413 DNVHVGIIPLPEDH 426 D V + P Sbjct: 535 DAAIVAALDAPAPA 548 >gi|319955785|ref|YP_004167048.1| erfk/ybis/ycfs/ynhg family protein [Nitratifractor salsuginis DSM 16511] gi|319418189|gb|ADV45299.1| ErfK/YbiS/YcfS/YnhG family protein [Nitratifractor salsuginis DSM 16511] Length = 575 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 108/352 (30%), Positives = 177/352 (50%), Gaps = 10/352 (2%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKG-LSV 132 A+ +KA+ Y +I RGGW LP + + G S ++ +R+ L I GDL S S Sbjct: 198 YAKLKKALERYLEIADRGGWKPLPAFKAIKPGQSHPAIPLIRQHLRIEGDLPASASLDSD 257 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D ++ A++ +++RHGL + ++D+ T +N V +I L++NL RIK + Q+ Sbjct: 258 IYDETLQKAMRRYKLRHGLPGTPVIDAQTRRWLNTSVQYKIAMLRLNLDRIKWIWRQEAP 317 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +R + +NIPA L E + V+ G+ D TP+ H+ + I+ NPYW IP SI++ Sbjct: 318 VR-IELNIPAFRLYVYEGQHLVDTMRVVTGKPDHPTPVFHNTMKYIVVNPYWKIPESIVR 376 Query: 253 KDMMALLRQDPQYLKDNNIHM---IDEKGKEVFVEEVDWNSPEPPN----FIFRQDPGKI 305 +M+ L +DP Y + + DE + ++W+ N + F Q PG Sbjct: 377 SEMLKHLVKDPYYYERRGKVLHAGWDEDSPRIDPGTINWSQYVGNNKTIPYRFMQVPGTR 436 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 NA+ K F ++ + Y+HDTP LF R + GC+R++ +L L Sbjct: 437 NALGKIKFLFPNKYSVYIHDTPSKKLFFRSTRAFSHGCMRIQKPRELLKVLALYNSNIDV 496 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 I E + TR+ + L E+PV VY++A+ + FR DIY D + Sbjct: 497 EGIMEQLGTREKETISLLHEIPVDIVYLTAFVDDYGNLNFRKDIYHYDKYQM 548 >gi|91227204|ref|ZP_01261663.1| putative amidase [Vibrio alginolyticus 12G01] gi|91188732|gb|EAS75020.1| putative amidase [Vibrio alginolyticus 12G01] Length = 513 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 109/418 (26%), Positives = 184/418 (44%), Gaps = 39/418 (9%) Query: 6 KINKILYCFFVYLILPM----GLSLVEKPIHASVLDEIINESYHSIV-NDRFDNFLARVD 60 + L+ ++ LP LS++ I L + + + +D F + + + Sbjct: 122 EGINWLFTDKAHVTLPAPSIDTLSVLSNEITVGKLGQFLASLRSPLQTDDAFYSAYSSLS 181 Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 P A + +A DIL RPL L ER+ I Sbjct: 182 EHSQYQYP-------AYQQTGLARVGDILEN--------RPL-----------LIERMEI 215 Query: 121 SG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 G D+ ++ +D +E A+K FQ HGL G++ +T+ +N R+ L +N Sbjct: 216 VGVDVSYLDLVTEEYDEQLELAIKEFQRIHGLKEDGVIGPNTIRWINFSPQERLHLLALN 275 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R + +++ V VN+P + +G+ S V+VGR R+TPI+ ++ ++ Sbjct: 276 SERSRIWSKER--DNVVFVNVPGYEVTYWHDGQPLFESKVVVGRASRKTPIMSVALDSVI 333 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEEVDWNSPEPPNFI 297 NP W +P +I+ KD++ ++++P YL ++NI +I + + ++W + P F Sbjct: 334 LNPTWNVPWTIMVKDIIPKVKRNPMYLINHNIQIIRSWTSNEIIDPTTINWATVNPRTFP 393 Query: 298 FR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 +R Q G NA+ K + Y+HDTP LF R +SGCVRV + L Sbjct: 394 YRMRQASGLQNALGLYKFNMPNPQAIYLHDTPSKNLFEQDRRAFSSGCVRVEHADQLAEL 453 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L K R + R T V L + VH +Y +AW ++ + +RDDIY D Sbjct: 454 LFKTQGLEERLAKKRESSRRSNTSVPLGERIQVHIIYQTAWL-EEGTLYYRDDIYKYD 510 >gi|113866566|ref|YP_725055.1| hypothetical protein H16_A0537 [Ralstonia eutropha H16] gi|113525342|emb|CAJ91687.1| Uncharacterized protein conserved in bacteria [Ralstonia eutropha H16] Length = 530 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 116/389 (29%), Positives = 182/389 (46%), Gaps = 18/389 (4%) Query: 56 LARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW----PELPIRPLHLGNSSVSV 111 R+ I P +A+A Y++I + W P LP L G Sbjct: 140 QQRLPDAIRQAAPTF--PLYGTLREALARYREIAKQPAWGQPLPPLPASKLTPGQPWAGA 197 Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 L RL+ GDL + ++ + VK FQ RHGL+ G++ ++TL +N+P+ Sbjct: 198 AALAARLVALGDLPAGTQVPARYEGTLVDGVKAFQSRHGLEADGVIGAATLAQLNLPIAS 257 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE--NGK--VGLRSTVIVGRV-DR 226 R+RQ+++ + R++ G R ++VN+P L A E +GK + L VIVG+ D Sbjct: 258 RVRQIELTMERLRWTP--LDGPRMIVVNVPEFMLRAYEIRDGKLDIKLEMKVIVGKALDT 315 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF-VEE 285 +TP+ + I F+PYW IP SI +++ + LR+DP Y + + GK V + E Sbjct: 316 RTPLFEEDMRYIEFSPYWNIPPSIARRETVPHLRRDPAYFNRQGLEFVTGDGKAVTTLSE 375 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 + + RQ PG +NA+ K F + N Y+H TP P LF R + GC+R Sbjct: 376 ENLEAVLNGRMRIRQRPGPLNALGDIKFVFPNNENIYLHHTPSPQLFKRGRRDFSHGCIR 435 Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 V + L ++L D P W+ I E + K+ V+L +PV Y + + D + F Sbjct: 436 VEAPVALAQFVLHDMPDWNETRIREAMTRGKSNTVRLQQPLPVVLAYGTVIARADGRVSF 495 Query: 406 RDDIYGLDNVHVGIIP----LPEDHPIDS 430 DIYG D + + P+ I S Sbjct: 496 LPDIYGHDKLLEKALRQRNGRPQQPAIAS 524 >gi|83593271|ref|YP_427023.1| ErfK/YbiS/YcfS/YnhG [Rhodospirillum rubrum ATCC 11170] gi|83576185|gb|ABC22736.1| ErfK/YbiS/YcfS/YnhG [Rhodospirillum rubrum ATCC 11170] Length = 599 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 108/395 (27%), Positives = 167/395 (42%), Gaps = 15/395 (3%) Query: 49 NDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE--LPIRPLHLGN 106 D N A D G+ + + YQ + GGWP + G+ Sbjct: 202 EDLLANAGAAPDFGLFLATLAPPTPQYDLLRQGLVRYQALARDGGWPTDLADGASIKPGD 261 Query: 107 SSVSVQRLRERLIISGDLDPSKG------LSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + +R RL G + S + D ++ AV++FQ HGL G++ Sbjct: 262 RDPRLPEMRRRLAAEGLVVGSDPTFIGPPDAELLDDFLVEAVRIFQAAHGLSADGVIGRG 321 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 TL MN RI Q++V L R + LL + +G ++LVN+P L E L V Sbjct: 322 TLVDMNTTPAQRITQIRVALERWR-LLPRALGQTHLLVNVPQYQLYLNEGRTTVLSMRVA 380 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM----IDE 276 VGR D +TP+ + + FNPYW +P SI Q +++ ++ YL + ++ Sbjct: 381 VGRQDFETPLFSDTLRYMEFNPYWNVPISIAQAEVIPKQIENSAYLAKKGFTVLPRGVEG 440 Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 V E VDW + ++ RQDPG N + + K F + Y+HDT +F+ Sbjct: 441 WDDGVGHESVDWKADAARSYRLRQDPGPANPLGTVKFMFPNEYAVYLHDTNSRGVFDRSA 500 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R + GCVRV+ L ++L + T V+L +P+H VYI+AW Sbjct: 501 RAVSHGCVRVQEPALLANYIL-ERFTDRIGKTAADFSGPTPKVVRLNRPLPIHLVYITAW 559 Query: 397 SPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPIDSD 431 + + F DIY D + P D+D Sbjct: 560 GGEGGKVAFVRDIYAKDRAIRQALHDTAASP-DAD 593 >gi|327393347|dbj|BAK10769.1| cell wall degradation amidase protein YcbB [Pantoea ananatis AJ13355] Length = 610 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 99/300 (33%), Positives = 154/300 (51%), Gaps = 8/300 (2%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + G ++ + +AVK FQ GLD G + T E +NV R L +N+ R++ Sbjct: 302 PAAPGSVNVYNDELVAAVKRFQQWQGLDADGAIGLRTREWLNVSPQQRAALLALNIQRLR 361 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL M ++VNIP SL NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 362 -LLPDDMH-NGIMVNIPNYSLNYYNNGTKVLSSRVIVGRPDRKTPLMRSALNNVVLNPPW 419 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--R 299 +P +++++D++ ++QDP YL + ++ + + +DW+ +F + R Sbjct: 420 NVPTNLVRQDIIPKVKQDPTYLYKHGYTLLSGWSADSEVIDPSMIDWSMVSASSFPYRIR 479 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG+ N++ K S + Y+HDTP LF +R +SGCVRV +L LL+D Sbjct: 480 QAPGQTNSLGRYKFNMPSSDAIYLHDTPNHNLFQRDIRALSSGCVRVNKASELAGILLQD 539 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGI 419 W+ I + +K T V + +PV+ Y++AW D QFR DIY DN Sbjct: 540 -VGWNDARISDTLKQGDTRYVPIRHRIPVNLYYLTAWVADDGKTQFRTDIYNYDNTARSA 598 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 47/150 (31%), Gaps = 33/150 (22%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ LY Y + +S +IN +++ Sbjct: 139 MLGYLQFVSSVPAQGETWLYSTTPYKLAVPSVS-------------VINAWQNAVNAGSS 185 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+ + + KA+ + + WP++ R L G S V Sbjct: 186 AAFVNSL---------VPQHPQYPLMHKALKSL--LEDKQPWPQIKNRDTLRPGQVSDDV 234 Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESA 141 LRE L SG L + V +A Sbjct: 235 PALREILRRSGMLSAQVTAPAPNEDAVPTA 264 >gi|291616920|ref|YP_003519662.1| YcbB [Pantoea ananatis LMG 20103] gi|291151950|gb|ADD76534.1| YcbB [Pantoea ananatis LMG 20103] Length = 620 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 99/300 (33%), Positives = 154/300 (51%), Gaps = 8/300 (2%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + G ++ + +AVK FQ GLD G + T E +NV R L +N+ R++ Sbjct: 312 PAAPGSVNVYNDELVAAVKRFQQWQGLDADGAIGLRTREWLNVSPQQRAALLALNIQRLR 371 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL M ++VNIP SL NG L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 372 -LLPDDMH-NGIMVNIPNYSLNYYNNGTKVLSSRVIVGRPDRKTPLMRSALNNVVLNPPW 429 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--R 299 +P +++++D++ ++QDP YL + ++ + + +DW+ +F + R Sbjct: 430 NVPTNLVRQDIIPKVKQDPTYLYKHGYTLLSGWSADSEVIDPSMIDWSMVSASSFPYRIR 489 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG+ N++ K S + Y+HDTP LF +R +SGCVRV +L LL+D Sbjct: 490 QAPGQTNSLGRYKFNMPSSDAIYLHDTPNHNLFQRDIRALSSGCVRVNKASELAGILLQD 549 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGI 419 W+ I + +K T V + +PV+ Y++AW D QFR DIY DN Sbjct: 550 -VGWNDARISDTLKQGDTRYVPIRHRIPVNLYYLTAWVADDGKTQFRTDIYNYDNTARSA 608 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 33/151 (21%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ LY Y + +S +IN +++ Sbjct: 149 MLGYLQFVSSVPAQGEIWLYSTTPYKLAVPSVS-------------VINAWQNAVNAGSS 195 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+ + + KA+ + + WP++ R L G S V Sbjct: 196 AAFVNSL---------VPQHPQYPLMHKALKSL--LEDKQPWPQIKNRDTLRPGQVSDDV 244 Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 LRE L SG L + V +A+ Sbjct: 245 PALREILRRSGMLSAQVTAPAPNEDVVPTAL 275 >gi|56477065|ref|YP_158654.1| hypothetical protein ebA2890 [Aromatoleum aromaticum EbN1] gi|56313108|emb|CAI07753.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 543 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 108/406 (26%), Positives = 182/406 (44%), Gaps = 25/406 (6%) Query: 40 INESYHSIVNDRFDN--------FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 ++ ++ + D FD R+ + P++ A +A+ Y+ + Sbjct: 123 VHANFVAPAADGFDPVTYLYAAVLERRLPDAVRRVAPVL--PLYANVREALRRYRILARD 180 Query: 92 GG----W----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W P P R L G + + L +RL+ GDL + + + ++ + VK Sbjct: 181 PSGIAPWLAALPRPPQRKLEPGQAYAGMPVLMQRLVALGDLPAATPVPLRYEGALVEGVK 240 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 FQ RHGL G+V +TLE ++V R+RQ+++ L R++ G R ++VN+P Sbjct: 241 AFQRRHGLAEDGVVGKATLEQLDVSPVARVRQIELTLERLR-WTPLLQGPRMIVVNVPEF 299 Query: 204 SLEAVE--NGKV--GLRSTVIVGRV-DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 L A E +G+V VIVG D +TP+ + I F+PYW +P SI + + + Sbjct: 300 VLRAYEARDGRVEVKTAMKVIVGSALDTRTPLFDEDMRFIEFSPYWNVPPSIARAETIPK 359 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFV-EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 LR+D YL+ + G+ + ++ RQ PG NA+ K F + Sbjct: 360 LRRDAAYLRQQGFEFVTGNGQVIPTFAPEYLDAVLRGEMRIRQRPGPSNALGDIKFIFPN 419 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 +N ++H T P LF R + GC+RV + L ++L+D P WS I + + Sbjct: 420 NDNIFLHHTSTPRLFGKDRRDFSHGCIRVEEPVVLAKFVLQDDPEWSEERIRAAMAGGVS 479 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 ++L +PV Y + D ++ F DIYG D + + P Sbjct: 480 KTLRLREPLPVVIAYSTVLVKSDGMVYFFRDIYGHDTLLDAALRQP 525 >gi|188534256|ref|YP_001908053.1| hypothetical protein ETA_21290 [Erwinia tasmaniensis Et1/99] gi|188029298|emb|CAO97175.1| Conserved hypothetical protein [Erwinia tasmaniensis Et1/99] Length = 612 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 100/290 (34%), Positives = 149/290 (51%), Gaps = 8/290 (2%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 + + + A+K FQ GL+ G + T E +NV R L +N+ R++ LL Sbjct: 308 NAANTYTPQLVEALKRFQRWQGLEADGAIGQRTREWLNVSPQQRATLLALNIQRLR-LLP 366 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 M ++VNIP SL NG+ L S VIVGR DR+TP++ S +N ++ NP W +P Sbjct: 367 DDMH-NGIMVNIPNYSLAYYVNGREILASRVIVGRPDRKTPLMRSALNNVVLNPPWNVPT 425 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQDPG 303 ++I+KD++ ++QDP YL + ++ E V +DW+ +F + RQ PG Sbjct: 426 TLIRKDIVPKVKQDPAYLYKHGYTLLSGWSSEAQVVDPSMIDWSMVSAASFPYRIRQAPG 485 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D W Sbjct: 486 PTNSLGRYKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNRASDLANLLLRD-VGW 544 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 + I +K T V + +PV+ Y++AW D QFR DIY D Sbjct: 545 NDTRISSTLKEGDTRFVSIRHRIPVNLYYLTAWVADDGQPQFRTDIYNYD 594 >gi|320540487|ref|ZP_08040137.1| putative murein L,D-transpeptidase [Serratia symbiotica str. Tucson] gi|320029418|gb|EFW11447.1| putative murein L,D-transpeptidase [Serratia symbiotica str. Tucson] Length = 541 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 121/498 (24%), Positives = 204/498 (40%), Gaps = 97/498 (19%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ N LY Y + + +IN+ ++ DR Sbjct: 70 MLGYLQFVSAIGTHGNSWLYSNIPYKLGL-------------PPNAVINQWQLAVRQDRL 116 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSV 111 +++ + + + ++ WP++ P L+ G S + Sbjct: 117 QSYVNSLVPQHPQYT-----KMYQALRDML------VNNRPWPQVSNGPNLYPGQLSNDI 165 Query: 112 QRLRE-------------------RLIISG-----------------------DLDPSKG 129 LRE RL + D+ + G Sbjct: 166 PALREILMRIDMLTHSAPVAQARGRLARNEPDDGGLSVGEENNRESLVATSARDITLAAG 225 Query: 130 LS-------------VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 + + + + VK FQ GL+ G++ + T E +NV R+ L Sbjct: 226 STVITQSAASVTVGETVYSPDLVAGVKRFQKWQGLNTDGVIGARTREWLNVSPQTRVALL 285 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 +N+ R++ L ++VNIP S+ +NG+ L S VIVGR R+TP+++S ++ Sbjct: 286 ALNIQRLRILPGYI--SSGIMVNIPNYSMTYYQNGREVLSSHVIVGRPSRKTPLMNSGLS 343 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEP 293 ++ NP W +P S+++ D++ +D Y + + ++ + K+ + +DWNS Sbjct: 344 NVVLNPPWNVPTSLVRADIVPKAMRDGSYFQQHGYTLLSDWSKDAKVIDPAMIDWNSVSA 403 Query: 294 PNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 NF + RQ PG N++ K S + Y+HDTP LF +R +SGCVRV D Sbjct: 404 RNFPYRVRQAPGASNSLGRFKFNMPSSDAIYLHDTPNHNLFQKDMRALSSGCVRVNKADD 463 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LL D WS + ++ TT V + +PV Y++AW D +QFR DIY Sbjct: 464 LANMLLHDA-GWSNDRVASTLQEGNTTYVNIRQRIPVKLYYLTAWVSDDGQMQFRTDIYN 522 Query: 412 LD-NVHVGIIPLPEDHPI 428 D V G+ L + + Sbjct: 523 YDHAVRSGVQILAQAEKL 540 >gi|310767192|gb|ADP12142.1| hypothetical protein EJP617_24610 [Erwinia sp. Ejp617] Length = 615 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 124/477 (25%), Positives = 207/477 (43%), Gaps = 68/477 (14%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEK---PIHASVLDEII-----NESY 44 M+GYL K LY Y + ++++ + + + L+ + Sbjct: 131 MLGYLQFTSSAPSKGEAWLYSTVPYRLEAPSMTVINQWQQALASGNLNGFVRSLAPQHPQ 190 Query: 45 HSIVNDRFDNFLARVDMGIDSDIPIISKETIA--QTEKAIAFYQDILSRGGWPELPIRPL 102 ++ ++ + LA I+ K+T+ Q ++ +DIL R G P+ Sbjct: 191 YARMHQALKSLLADTRPWPR----IVDKQTLRPGQISNDVSALRDILQRNGMMSSANEPV 246 Query: 103 HL-----GNSSVSV----------QRLRERL----------IISGDLDPSKGLSVAFD-- 135 G + L+ R +SGD+ S F+ Sbjct: 247 KPAAEVVGAVDAPLVHDDDNAQPDANLQTRADNNRVVSPSANLSGDVTDSAAAPNVFNGQ 306 Query: 136 -----------AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + A+K FQ GL+ G + + T E +NV R L +N+ R++ Sbjct: 307 AALGSQANTYSPQLVEALKRFQRWQGLEADGAIGTRTREWLNVSPQQRATLLALNIQRLR 366 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L + ++VNIP SL NG+ L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 367 LLPDDM--QNGIMVNIPNYSLAYYVNGREILSSRVIVGRPDRKTPLMRSALNNVVLNPPW 424 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--R 299 +P ++++KD++ +++DP YL + ++ E V ++W++ +F + R Sbjct: 425 NVPTTLVRKDIVPKVKRDPMYLYKHGYTLLAGWSNEAEVVDPSMINWSTVSAASFPYRIR 484 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 485 QAPGATNSLGRYKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNRASDLANLLLRD 544 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 W+ I +K T V + +PV+ Y++AW +D Q+R DIY DN Sbjct: 545 -VGWNDARISGTLKEGNTRFVPIRQRIPVNLYYLTAWVAEDGQPQYRTDIYNYDNTA 600 >gi|254472994|ref|ZP_05086392.1| peptidoglycan-binding domain 1 [Pseudovibrio sp. JE062] gi|211957715|gb|EEA92917.1| peptidoglycan-binding domain 1 [Pseudovibrio sp. JE062] Length = 550 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 108/416 (25%), Positives = 182/416 (43%), Gaps = 15/416 (3%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIIN-ESYHSIVNDRFDNFLARVDMGIDSDIPIISKE 73 + IL + + E I + + Sbjct: 142 LTHSILKYAEDAQAGRVSPYAISEDITLRPERPDPIEALTSVARSAAPAQVLAAFNPPHA 201 Query: 74 TIAQTEKAIAFYQDILSRGGWPE---LPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKG 129 +K +A ++ G + +P L +G+ S V LRERL + + Sbjct: 202 EYKALKKQLAELREQTHNGDLEKQVVIPAGKLLKVGSKSSRVALLRERLSV----PTVES 257 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD-LRIRQLQVNLMRIKKLLE 188 + + AV+ FQ +GL P G V TL A+N V I+ + N+ R + + Sbjct: 258 QMNVYTQDLAYAVEAFQAANGLHPDGAVGPRTLLALNGRVSGDPIKDVIANMERWR-WMP 316 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + +G ++ VNIP + G V + V+VG+ +TP+ ++ ++ NPYW +P Sbjct: 317 RDLGETHLRVNIPEFMVRLNMEGFVLYETRVVVGKRSNKTPVFSDKMQHVVVNPYWNVPY 376 Query: 249 SIIQKDMMALLRQ-DP-QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 SI K+++ LR +P YL+ N ++ GK V V+W++ RQ PG+ N Sbjct: 377 SIASKELLPELRASNPQSYLQKGNYEIVYG-GKIVDPRRVNWDAVTFKQIRIRQRPGRGN 435 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 A+ K F +++N Y+HDTP LFN R + GCVRV+N + L+ T + Sbjct: 436 ALGKIKFMFPNKHNVYLHDTPSKSLFNRSERAFSHGCVRVQNPFEFSDALMATQDTITGN 495 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +I +V ++T V L ++PVH Y +A+ + +Q R DIYG + + + L Sbjct: 496 YIRSLVGKKQTQ-VNLQKDIPVHISYFTAFVDEAGKLQRRPDIYGHNQAVIDALNL 550 >gi|300716096|ref|YP_003740899.1| conserved uncharacterized protein [Erwinia billingiae Eb661] gi|299061932|emb|CAX59048.1| conserved uncharacterized protein [Erwinia billingiae Eb661] Length = 616 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 100/292 (34%), Positives = 151/292 (51%), Gaps = 8/292 (2%) Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + + A + AVK FQ GL+P G + T E +NV LR L +N+ R++ L Sbjct: 310 PADPTHIYSAELVEAVKRFQRWQGLEPDGAIGPRTREWLNVSPQLRASLLALNIQRLR-L 368 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 L M ++VNIP SL NG L S VIVGR DR+TP++ S +N ++ NP W + Sbjct: 369 LPDDMH-NGIMVNIPNYSLIYYLNGSQILASRVIVGRPDRKTPLMRSALNNVVLNPPWNV 427 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQD 301 P +++++D++ ++QDP YL +N ++ + + +DW +F + RQ Sbjct: 428 PTTLVRQDIVPKVKQDPAYLYKHNYTLLSGWSNDAEVIDPSMIDWRMVSAASFPYRIRQA 487 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 488 PGATNSLGRYKFNMPSSDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASDLANLLLQDA- 546 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I +K T V + +PV+ Y++AW D Q+R DIY D Sbjct: 547 GWNDTRISSTLKEGDTRYVPIRHRIPVNLYYLTAWVADDGKAQYRTDIYNYD 598 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 45/147 (30%), Gaps = 33/147 (22%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K LY Y + LS +IN+ ++ + Sbjct: 130 MLGYLQFVSTVPAKGETWLYSNVPYKLEVPTLS-------------VINQWQRAVEHGGT 176 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 + F+ + +A+ + WP+L + L G S V Sbjct: 177 NAFVTSLAPQ---------HPQYVLMHQALKTL--LADNHPWPQLAAKQTLKPGQLSDDV 225 Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYV 138 LR L +G + S D V Sbjct: 226 PALRAILARTGMMTASAEGPKPTDEPV 252 >gi|269102898|ref|ZP_06155595.1| L,D-transpeptidase YcbB [Photobacterium damselae subsp. damselae CIP 102761] gi|268162796|gb|EEZ41292.1| L,D-transpeptidase YcbB [Photobacterium damselae subsp. damselae CIP 102761] Length = 582 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 111/361 (30%), Positives = 173/361 (47%), Gaps = 15/361 (4%) Query: 72 KETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 E KA+ + S WP + LGN + + L L + GDL + Sbjct: 216 NEQYTSNIKALEKLTQL-SHKRWPIFHVANKVSLGNPLPNAKNLITILEMLGDLPSYQAE 274 Query: 131 S------VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + AVK FQ RHGL P G++ +TL ++ R+R + +N +R+ Sbjct: 275 QMLTENLDYLSPTLIEAVKSFQQRHGLSPDGVIGPNTLYWLSKSPQERLRVVALNTLRLS 334 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +++ ++VNIPA L A N + + S VIVGR R TP++ S I ++FNPYW Sbjct: 335 LWPDEQ--PNQIVVNIPAYELTARLNNQSVMTSKVIVGRPSRNTPMMDSTITSVVFNPYW 392 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK--EVFVEEVDWNSPEPPNFIF--RQ 300 +P SI++KD++ ++++P YL N ++ + V ++W P F + RQ Sbjct: 393 NVPTSIMRKDILPKVKRNPSYLTRNRYEILSSWSNPARISVNAINWRGVNPKTFPYRLRQ 452 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG NA+ K + Y+HDT LFN R +SGCVRV L LL+ + Sbjct: 453 KPGNKNALGRFKFNIPNDYAIYLHDTSSKRLFNKSDRALSSGCVRVEYAKGLAQLLLEYS 512 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + I+ +TR T V L ++PVH +Y +AW+ + +I +RDDIY D + Sbjct: 513 GVSDKRFIQYSSRTR-TKTVVLKNKIPVHLIYQTAWAEGNGLIYYRDDIYHYDKMGGASQ 571 Query: 421 P 421 Sbjct: 572 N 572 >gi|149278087|ref|ZP_01884226.1| cell wall degradation protein [Pedobacter sp. BAL39] gi|149231285|gb|EDM36665.1| cell wall degradation protein [Pedobacter sp. BAL39] Length = 532 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 100/372 (26%), Positives = 188/372 (50%), Gaps = 22/372 (5%) Query: 52 FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH---LGNSS 108 D+ ++ + P+ +K + Y + G + ++ L +G+S+ Sbjct: 176 LDSLMSGKKTAAEDWEPV--NREYKWMKKRLTSYYQLQQEGKFEDISSGKLKVYRIGDSA 233 Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++V+++R RLI GD K S FD+ + ++VK Q ++G+ +G ++ + ++A+NVP Sbjct: 234 LTVRQVRLRLIQFGD-STLKDSSSVFDSTLRASVKRAQGQYGMGQNGNINKALIKALNVP 292 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 ++ RI+Q+ +N+ R++ + Q RY+L NIP L E+ K L ++VG+ +T Sbjct: 293 LEQRIKQILINMERMR-WMPQMPDGRYLLANIPEYRLHVFEDHKTVLNMGIVVGKAANKT 351 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 I +++ I+F+PYW IP SI++ +++ ++++ YL N+ + + Sbjct: 352 VIFSNKMRNIVFSPYWNIPASIVRAEVLPAMKRNRNYLASKNME------------QTGF 399 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 ++ P RQ PG N++ K F + + Y HDTP LF R + GC+R+ Sbjct: 400 SNGLPE---VRQKPGDNNSLGRVKFLFPNSYDIYFHDTPAKSLFAQEKRAFSHGCIRLSQ 456 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 L +LL W++ I + + +K V L++ VPV Y + W +D ++ FRDD Sbjct: 457 PAALAEYLLDGKSGWTKEKIAKAMSGKKEVWVALSSPVPVFITYFTCWVDEDGLLNFRDD 516 Query: 409 IYGLDNVHVGII 420 +YG D + Sbjct: 517 VYGHDRKMAEQL 528 >gi|126174124|ref|YP_001050273.1| peptidoglycan binding domain-containing protein [Shewanella baltica OS155] gi|125997329|gb|ABN61404.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS155] Length = 521 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 109/355 (30%), Positives = 174/355 (49%), Gaps = 12/355 (3%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + K +A + + W L + L +G S V + +RL + GDL ++ Sbjct: 166 YQRVLKQVAHLVQLDATEPWETLVLDEKLTVGMSHPFVDTIAKRLWLLGDLAIEPTTNLV 225 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + VK FQ RHGL G++ TL +N R L N +R + E+K+ Sbjct: 226 YSEELVVGVKRFQQRHGLKQDGVIGKQTLYWLNQSPKARAVLLAKNTIRQRVF-ERKLEP 284 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 Y+L+N+PA + V+NG L S VIVG+ RQTP+L S+I+ ++ NP W +P SI+++ Sbjct: 285 SYLLINVPAFEMILVDNGTTVLNSKVIVGKSSRQTPLLDSQISSVVLNPSWRVPSSILRR 344 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAST 311 D++ +R++ YL + + D G+ V +W +F + Q PG NA+ Sbjct: 345 DILPQIRRNGHYLNERQFDVYDYNGQLVQHMPEEWQDLASTSFPYQLVQRPGAKNALGKY 404 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTPTWSRYH 367 K F + + Y+H T EP LFN R +SGC+R+ + +L W L+KD W + Sbjct: 405 KFHFDNSFSVYLHGTSEPSLFNKDDRALSSGCIRIEKVTELAQWFKEHLVKDKRLWDKL- 463 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 V + L+ ++PVH VY +AW Q+R DIY L+ +P Sbjct: 464 ---VPDVTEPQWFSLSQKLPVHLVYWTAWLDDSGQEQYRSDIYHLEAELTNAVPA 515 >gi|127512756|ref|YP_001093953.1| peptidoglycan binding domain-containing protein [Shewanella loihica PV-4] gi|126638051|gb|ABO23694.1| Peptidoglycan-binding domain 1 protein [Shewanella loihica PV-4] Length = 458 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 106/372 (28%), Positives = 174/372 (46%), Gaps = 6/372 (1%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRP 101 I F + + + P ++ + + + W P P Sbjct: 77 QRQGIATGEFPSAPDDPYTSVIASEPQVAD--YLMLSNRVRYLLWLARHESWLPLEPQGW 134 Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+S + +R RL GD + FD +++A+ FQ RHGL P ++ +T Sbjct: 135 LKPGDSHRIIPEIRVRLQALGDYPQGDTSGLYFDETLKAAMIKFQTRHGLKPDAIIGPAT 194 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 L +N R + L VN +R + L +G RY+L+NIPA + V++ +V LRS VIV Sbjct: 195 LSWLNRTPRERAQLLAVNFIRRAEYLA-DIGERYLLINIPAYEMWLVDDNQVALRSKVIV 253 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 G+ RQTPI+ I ++ NP W +PR ++ D++ +R+D Y+ N + D +G+ V Sbjct: 254 GKPYRQTPIISGEIKNLVLNPSWRVPRRLLTHDLLPKVREDGSYISSRNFEVFDYQGERV 313 Query: 282 FVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 + +W F +R Q PG N + K F + + Y+HDT + LF R Sbjct: 314 IKSDDEWRDIAKGKFPYRLVQKPGVGNTLGRYKFFFPNEYSVYLHDTSDKALFQRSDRAL 373 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 +SGC+R+ + L W+ + + ++ KT +P+H VY ++W Sbjct: 374 SSGCIRIEKVEQLANWMASHLVRDKQTWVRMQIERDKTQWFAFDAGLPIHLVYWTSWLDD 433 Query: 400 DSIIQFRDDIYG 411 D++ QFRDDIY Sbjct: 434 DNVAQFRDDIYK 445 >gi|226946156|ref|YP_002801229.1| petidoglycan binding protein [Azotobacter vinelandii DJ] gi|226721083|gb|ACO80254.1| petidoglycan binding protein [Azotobacter vinelandii DJ] Length = 530 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 106/353 (30%), Positives = 165/353 (46%), Gaps = 7/353 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKG-- 129 E A A + R W +P L G + V L +RL G L Sbjct: 180 EPYRALRHAYAELRRNAPR-AWRLVPDGSLLRPGMTDERVPLLEQRLAAEGYLSERASGR 238 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + + A+K FQ +H LD G+V +TL +NV R+ Q++VNL R + L + Sbjct: 239 DRQRYTPQLVEAMKRFQAKHFLDDDGVVGPATLTELNVTPAERLAQVRVNLERFR-WLAR 297 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 +M +LV++ A L + + ++ VGR R TP+L S++ + NP W +P + Sbjct: 298 EMEPTLLLVDVAGAQLTFFHDHQPRWQTRTQVGRPTRPTPLLKSQVTHLTLNPTWTVPPT 357 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I+++D + +R++ +L N+ +ID +GKE+ VDW++P + RQDPG N + Sbjct: 358 ILREDKLPRIRRNIGFLASQNLRVIDRQGKELNPRNVDWHNPSG--IMLRQDPGPHNPLG 415 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 I F + Y+HDTP LF R +SGCVRV + L LL+ R E Sbjct: 416 RIAIRFPNPFAVYLHDTPSQHLFAKETRTLSSGCVRVERAMQLTDLLLEGASPAERQRFE 475 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 E++ + KT + L VP+ Y + + FR DIY D V + Sbjct: 476 EILASGKTRNLNLPRPVPILLAYWTVQVDDGGQLVFRPDIYAHDGKLVAALNA 528 >gi|259908907|ref|YP_002649263.1| hypothetical protein EpC_22600 [Erwinia pyrifoliae Ep1/96] gi|224964529|emb|CAX56039.1| Peptidoglycan-binding domain 1 protein [Erwinia pyrifoliae Ep1/96] gi|283478902|emb|CAY74818.1| Uncharacterized protein ycbB [Erwinia pyrifoliae DSM 12163] Length = 615 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 124/477 (25%), Positives = 205/477 (42%), Gaps = 68/477 (14%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEK---PIHASVLDEII-----NESY 44 M+GYL K LY Y + ++++ + + + L+ + Sbjct: 131 MLGYLQFTSSAPSKGEAWLYSTVPYRLEAPSMTVINQWQQALASGNLNGFVRSLAPQHPQ 190 Query: 45 HSIVNDRFDNFLARVDMGIDSDIPIISKETIA--QTEKAIAFYQDILSRGGWPELPIRPL 102 ++ ++ + LA I+ K+T+ Q ++ +DIL R G P+ Sbjct: 191 YARMHQALKSLLADTRPWPR----IVDKQTLRPGQISNDVSALRDILQRNGMMSSANEPV 246 Query: 103 HL-----GNSSVSV----------QRLRERL----------IISGDLDPSKGLSVAFD-- 135 G + L R +SGD+ S F+ Sbjct: 247 KPAAEVVGAVDAPLVHDDDNAQPDANLLTRADNNRVVSPSANLSGDVTDSAAAPNVFNGQ 306 Query: 136 -----------AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + A+K FQ GL+ G + T E +NV R L +N+ R++ Sbjct: 307 AALGSQANTYSPQLVEALKRFQRWQGLEADGAIGMRTREWLNVSPQQRATLLALNIQRLR 366 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L + ++VNIP SL NG+ L S VIVGR DR+TP++ S +N ++ NP W Sbjct: 367 LLPDDM--QNGIMVNIPNYSLAYYVNGREILSSRVIVGRPDRKTPLMRSALNNVVLNPPW 424 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--R 299 +P ++++KD++ +++DP YL + ++ E V ++W++ +F + R Sbjct: 425 NVPTTLVRKDIVPKVKRDPMYLYKHGYTLLAGWSNEAEVVDPSMINWSTVSAASFPYRIR 484 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 485 QAPGATNSLGRYKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNRASDLANLLLRD 544 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 W+ I +K T V + +PV+ Y++AW +D Q+R DIY DN Sbjct: 545 -VGWNDARISGTLKEGNTRFVPIRQRIPVNLYYLTAWVAEDGQPQYRTDIYNYDNTA 600 >gi|294140649|ref|YP_003556627.1| putative peptidoglycan binding domain-containing protein [Shewanella violacea DSS12] gi|293327118|dbj|BAJ01849.1| putative peptidoglycan binding domain protein [Shewanella violacea DSS12] Length = 475 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 111/342 (32%), Positives = 178/342 (52%), Gaps = 4/342 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + T I + + R W EL L LG+S V + RL + GDL ++ Sbjct: 121 KDYLTTSNKIRYLLWLEQRDDWSELASNTWLKLGDSHSLVPEISSRLKVLGDLRQYDPIN 180 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 FDA V + VK FQ+RHGL G++ TL +N+ R L +N + L + Sbjct: 181 TLFDANVNNGVKRFQLRHGLTLDGIIGPETLSWINMKPVKRAELLAINFINKTGYLA-SV 239 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 R++++NIPA LE ++NG+V L+S VIVG+ RQTP L SRI+ ++ NP W +PRS++ Sbjct: 240 EPRFLIINIPAFELELIDNGQVALQSRVIVGKPYRQTPQLSSRISNLVINPSWRVPRSLL 299 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMA 309 +D++ +R+D Y++ N + D G+ V +W +F +R Q PG+ N + Sbjct: 300 TRDLLPKVREDGGYIQARNFDVFDNNGEIVSKTSQEWQDLAHGHFPYRLVQIPGEGNTLG 359 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F + ++ Y+HDT + LF R +SGC+R+ N+ L W+ + + ++ Sbjct: 360 RYKFYFENEHSVYLHDTVDKELFEESNRALSSGCIRIENVEGLANWMASNLVRDKQTWVD 419 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 + KT L +P++ VY +AW + QFR+DIY Sbjct: 420 MQPERHKTQWFSLEQSLPIYLVYWTAWVDQWGNAQFRNDIYH 461 >gi|269967085|ref|ZP_06181153.1| putative amidase [Vibrio alginolyticus 40B] gi|269828344|gb|EEZ82610.1| putative amidase [Vibrio alginolyticus 40B] Length = 477 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 109/418 (26%), Positives = 184/418 (44%), Gaps = 39/418 (9%) Query: 6 KINKILYCFFVYLILPM----GLSLVEKPIHASVLDEIINESYHSIV-NDRFDNFLARVD 60 + L+ ++ LP LS++ I L + + + +D F + + + Sbjct: 86 EGINWLFTDKAHVTLPAPSIDTLSVLSNEITVGKLGQFLASLRSPLQTDDAFYSAYSSLS 145 Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 P A + +A DIL RPL L ER+ I Sbjct: 146 EHSQYQYP-------AYQQTGLARVGDILEN--------RPL-----------LIERMEI 179 Query: 121 SG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 G D+ ++ +D +E A+K FQ HGL G++ +T+ +N R+ L +N Sbjct: 180 VGVDVSYLDLVTEEYDEQLELAIKEFQRIHGLKEDGVIGPNTIRWINFSPQERLHLLALN 239 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R + +++ V VN+P + +G+ S V+VGR R+TPI+ ++ ++ Sbjct: 240 SERSRIWSKER--DNVVFVNVPGYEVTYWHDGQPLFESKVVVGRASRKTPIMSVALDSVI 297 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEEVDWNSPEPPNFI 297 NP W +P +I+ KD++ ++++P YL ++NI +I + + ++W + P F Sbjct: 298 LNPTWNVPWTIMVKDIIPKVKRNPMYLINHNIQIIRSWTSNEIIDPTTINWATVNPRTFP 357 Query: 298 FR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 +R Q G NA+ K + Y+HDTP LF R +SGCVRV + L Sbjct: 358 YRMRQASGLQNALGLYKFNMPNPQAIYLHDTPSKNLFEQDRRAFSSGCVRVEHADQLAEL 417 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L K R + R T V L + VH +Y +AW ++ + +RDDIY D Sbjct: 418 LFKTQGLEERLAKKRESSRRSNTSVPLGERIQVHIIYQTAWL-EEGTLYYRDDIYKYD 474 >gi|254473448|ref|ZP_05086845.1| peptidoglycan-binding domain 1 protein [Pseudovibrio sp. JE062] gi|211957564|gb|EEA92767.1| peptidoglycan-binding domain 1 protein [Pseudovibrio sp. JE062] Length = 625 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 107/404 (26%), Positives = 176/404 (43%), Gaps = 15/404 (3%) Query: 35 VLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW 94 VL + +ND + D + + +A Y L+ Sbjct: 216 VLKNVFISPQVPKLNDMLTQMEETRSLAQFFDGLEPEAPSYDILKDQLARYNAALTSDYP 275 Query: 95 PELPIRP-LHLGNSSVSVQRLRERLIISGDLD---------PSKGLSVAFDAYVESAVKL 144 + P + LG++ V +L +RL G ++ ++ + VK Sbjct: 276 VYIEDGPSIRLGDTGGRVAQLEKRLQAEGYAPYYSDYTGTSETEVPPTFYNDDMVELVKD 335 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ RHGL G+V T A+N ++ R Q+ VNL R++ G RYV VN+ Sbjct: 336 FQKRHGLTVDGVVGKKTRAALNASLEDRRNQILVNLERMRWDDPLPSG-RYVKVNVAEQM 394 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 + +E V + +VG+ TP+ NP W +P SI + + LR++ Sbjct: 395 VRVMEGTDVLYETRSVVGKPRNATPLFSDTFEYAEINPTWGVPWSIATNEYLPKLRKNAS 454 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTY 322 L I++ + GK V ++W++ F + RQ G+ NA+ + K F +++N Y Sbjct: 455 ALSGTGINVY-KNGKRVDPTAINWSNVSKRKFGYQLRQKAGRKNALGAVKYMFPNKHNIY 513 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL 382 +HDTP LFN R + GC+RV++ LL + SR +E++ KT +KL Sbjct: 514 LHDTPSKRLFNKDQRAFSHGCIRVQDPFTFGEVLLSGS-GHSRAKMEKLRARGKTVRLKL 572 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDH 426 VPVH Y +A++ D +QFR+DIY D + + +D Sbjct: 573 TETVPVHLRYYTAFAGVDGELQFREDIYKQDKAILEALLTSQDA 616 >gi|312171965|emb|CBX80222.1| Uncharacterized protein ycbB [Erwinia amylovora ATCC BAA-2158] Length = 615 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 126/477 (26%), Positives = 198/477 (41%), Gaps = 74/477 (15%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEK---PIHASVLDEIINE-----SY 44 M+GYL K LY Y + +++ + + LD + Sbjct: 131 MLGYLQFTSSVPAKGEAWLYSTVPYRLEAPSTTVINQWQQALAQGNLDSFVRSLAPRHPQ 190 Query: 45 HSIVNDRFDNFLARVDMGIDSDIPIISKETIA--QTEKAIAFYQDILSRGGWPELPIRPL 102 + ++ + LA I+ K+T+ Q + +DIL R G P Sbjct: 191 YVRMHQALKSLLADTRPWPQ----IVDKQTLRPGQISNDVPALRDILQRNGMMSAANEPA 246 Query: 103 HL----------------------------GNSSVSVQRLRERLIISGDLDPSKGL---- 130 G +S V + ISGD + Sbjct: 247 RPPVEVVGAVNAPLVHDDDNAQPDTGLGGQGENSAVVSPSAK---ISGDASNAAAEPNVF 303 Query: 131 ---------SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 + + + A+K FQ GL+ G + T + +NV R L +N+ Sbjct: 304 TGQAALGSPTNTYTPQLVEALKRFQRWQGLEADGAIGLRTRQWLNVSPPQRATLLALNIQ 363 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R++ LL M ++VNIP SL NG+ L S VIVGR DR+TP++ S +N ++ N Sbjct: 364 RLR-LLPDDMH-NGIMVNIPNYSLAYYVNGREILSSRVIVGRPDRKTPLMRSALNNVVLN 421 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF 298 P W +P ++++KD++ ++QDP YL + ++ E V ++W+ +F + Sbjct: 422 PPWNVPTTLVRKDIVPKVKQDPMYLYKHGYTLLAGWSNEAEVVDPSMINWSMVSAASFPY 481 Query: 299 --RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 RQ PG N++ K S + Y+HDTP LF +R +SGCVRV DL L Sbjct: 482 RIRQAPGPTNSLGRYKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNRASDLANLL 541 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L D W I +K T V + +PV+ Y++AW +D + QFR DIY D Sbjct: 542 LHD-VGWDDARISGTLKEGNTRFVPIRHRIPVNLYYLTAWVAEDGLPQFRTDIYNYD 597 >gi|292487843|ref|YP_003530718.1| hypothetical protein EAMY_1360 [Erwinia amylovora CFBP1430] gi|292899070|ref|YP_003538439.1| peptidoglycan binding protein [Erwinia amylovora ATCC 49946] gi|291198918|emb|CBJ46028.1| putative peptidoglycan binding protein [Erwinia amylovora ATCC 49946] gi|291553265|emb|CBA20310.1| Uncharacterized protein ycbB [Erwinia amylovora CFBP1430] Length = 615 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 126/477 (26%), Positives = 198/477 (41%), Gaps = 74/477 (15%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEK---PIHASVLDEIINE-----SY 44 M+GYL K LY Y + +++ + + LD + Sbjct: 131 MLGYLQFTSSVPAKGEAWLYSTVPYRLEAPSTTVINQWQQALAQGNLDSFVRSLAPRHPQ 190 Query: 45 HSIVNDRFDNFLARVDMGIDSDIPIISKETIA--QTEKAIAFYQDILSRGGWPELPIRPL 102 + ++ + LA I+ K+T+ Q + +DIL R G P Sbjct: 191 YVRMHQALKSLLADTRPWPQ----IVDKQTLRPGQISNDVPALRDILQRNGMMSAANEPA 246 Query: 103 HL----------------------------GNSSVSVQRLRERLIISGDLDPSKGL---- 130 G +S V + ISGD + Sbjct: 247 RPPVEVVGAVNAPLVHDDDNAQPDTGLGGQGENSAVVSPSAK---ISGDASNAAAEPNVF 303 Query: 131 ---------SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 + + + A+K FQ GL+ G + T + +NV R L +N+ Sbjct: 304 TGQAALGSPTNTYTPQLVEALKRFQRWQGLEADGAIGLRTRQWLNVSPPQRATLLALNIQ 363 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R++ LL M ++VNIP SL NG+ L S VIVGR DR+TP++ S +N ++ N Sbjct: 364 RLR-LLPDDMH-NGIMVNIPNYSLAYYVNGREILSSRVIVGRPDRKTPLMRSALNNVVLN 421 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF 298 P W +P ++++KD++ ++QDP YL + ++ E V ++W+ +F + Sbjct: 422 PPWNVPTTLVRKDIVPKVKQDPMYLYKHGYTLLAGWSNEAEVVDPSMINWSMVSAASFPY 481 Query: 299 --RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 RQ PG N++ K S + Y+HDTP LF +R +SGCVRV DL L Sbjct: 482 RIRQAPGPTNSLGRYKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNRASDLANLL 541 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 L D W I +K T V + +PV+ Y++AW +D + QFR DIY D Sbjct: 542 LHD-VGWDDARISGTLKEGNTRFVPIRHRIPVNLYYLTAWVAEDGLPQFRTDIYNYD 597 >gi|293396754|ref|ZP_06641030.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291421018|gb|EFE94271.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 572 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 96/309 (31%), Positives = 151/309 (48%), Gaps = 9/309 (2%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 + + + + VK FQ GL G++ T E +NV +R L +N+ R++ Sbjct: 265 AASMADNLYSSELVEGVKRFQKWQGLSTDGIIGVRTREWLNVSPQMRASLLALNIQRLRI 324 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L + ++VNIP SL +NG L S VIVGR R+TP++ S +N ++ NP W Sbjct: 325 LPGRV--SNGIMVNIPNYSLVYYQNGNEVLSSRVIVGRPSRKTPMMSSALNNVVVNPPWN 382 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQ 300 +P +++++D++ +D Y + + ++ + + +DWN NF + RQ Sbjct: 383 VPTTLVREDIVPKAMRDANYFRKHGYTVLSGWSNDAEVIDPSMIDWNMVSARNFPYRIRQ 442 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N++ K S + Y+HDTP LF +R +SGCVRV DL LL+D Sbjct: 443 APGATNSLGRFKFNMPSSDAIYLHDTPNHNLFQKDIRALSSGCVRVNKASDLANMLLQDA 502 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN-VHVGI 419 W+ + +K TT V + +PV Y++AW D QFR DIY DN V G Sbjct: 503 -GWNNSRVSSTLKQGNTTYVNVRQHIPVKLYYLTAWVSDDGKPQFRTDIYNYDNTVRSGA 561 Query: 420 IPLPEDHPI 428 L + + Sbjct: 562 QILAQAEKL 570 >gi|257095730|ref|YP_003169371.1| peptidoglycan-binding domain 1 protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048254|gb|ACV37442.1| Peptidoglycan-binding domain 1 protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 542 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 107/388 (27%), Positives = 174/388 (44%), Gaps = 21/388 (5%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW----PELP 98 + ++ +D+ + R + +A+A Y+ + W P LP Sbjct: 143 LHSAMADDQMPDLARRAAPRSAD---------YERLRQALAAYRAVAGHPAWQQELPPLP 193 Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G + V RL RLI+ DL ++ + +K FQ RHGL P G++ Sbjct: 194 SGKLAPGQAYSGVSRLTARLIVLADLPVGTLPPPRYEGSLVDGIKSFQERHGLTPDGVIG 253 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE----NGKVG 214 T E + V R+ QL++ L R++ Q+ G R ++VN+P L + G Sbjct: 254 KETFEQLKVSPGARVGQLELALERLRWTPLQRQG-RIIVVNVPEFMLHTYQMNDKGSDPG 312 Query: 215 LRSTVIVGRV-DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 VIVG +TP+ + + + F+PYW +P SI + + + LR DP Y + + Sbjct: 313 PVMRVIVGNARKTRTPLFDAEMRFVEFSPYWNVPPSISRGETLPRLRSDPGYFERQGFEL 372 Query: 274 IDEKGKEV-FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 + G+ + + E ++ RQ PG NA+ K F + +N Y+H TP LF Sbjct: 373 VTSDGRVLGSLPEGGLDALAQGRMRIRQKPGARNALGDIKFVFPNTDNIYLHHTPTAQLF 432 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 R + GC+RV DL ++L P W+R I + +K K+ ++L E+PV Y Sbjct: 433 KRDRRDFSHGCIRVEAPADLAEFVLAGEPEWTRQRIIQAMKRGKSATLRLKEEIPVVIAY 492 Query: 393 ISAWSPKDSIIQFRDDIYGLDNVHVGII 420 +A +D + F DIYGLD + Sbjct: 493 RTATV-RDGRVHFFPDIYGLDRALRDAL 519 >gi|256823023|ref|YP_003146986.1| ErfK/YbiS/YcfS/YnhG family protein [Kangiella koreensis DSM 16069] gi|256796562|gb|ACV27218.1| ErfK/YbiS/YcfS/YnhG family protein [Kangiella koreensis DSM 16069] Length = 570 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 121/362 (33%), Positives = 188/362 (51%), Gaps = 10/362 (2%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 S + + K +A + WP + ++P + + ++ + RL+ GDL Sbjct: 205 APSSQEYIELRKYLAELRSRTVSP-WPAIDLQPSIKPQMADPRLEAIAVRLMFWGDLPAD 263 Query: 128 ----KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 + ++ + AV+ FQ+RHGL G++ T+ A+N+ RI QL VNL +I Sbjct: 264 WAYLAPFPMRYEDGLIRAVEHFQLRHGLVADGVLGKKTIAALNITPQQRIEQLVVNLEQI 323 Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + E K R + VNIP+ L A+ENG+V LR VIVG++ R+TPI +I ++ NP Sbjct: 324 R-WHELKPASRLIKVNIPSFELLALENGEVRLRMPVIVGQLKRKTPIFEEKIQYLVLNPT 382 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QD 301 WV+P + KD + L++Q+PQYL DN + + K +DW NF +R Q Sbjct: 383 WVVPWELATKDKLPLIQQNPQYLLDNQFSVYLQDFKIEDPTRIDWAQVTRANFPYRLVQA 442 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG NA+ K F + Y+HDTP+ LFNN +R +SGC+R++ +DL W+L+ T Sbjct: 443 PGSGNALGQVKFMFPNPYEVYLHDTPDKSLFNNELRAFSSGCIRIQRPLDLLWWILR-TN 501 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 +S IE + + T + L + VP+ Y +A+ D IQFR DIY D + Sbjct: 502 GFSDIDIENQLNKKHTNTISLTSPVPIRLEYRTAYWGLDQTIQFRADIYQRDTKLYQALQ 561 Query: 422 LP 423 P Sbjct: 562 QP 563 >gi|312887097|ref|ZP_07746701.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] gi|311300409|gb|EFQ77474.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] Length = 550 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 104/374 (27%), Positives = 182/374 (48%), Gaps = 21/374 (5%) Query: 49 NDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP--LHLGN 106 + D+ L ++ P+ + Y+ + + W + + L G+ Sbjct: 186 DQYLDSLLKAPAKSFSANEPVY--RQYELLRHFLKIYRSLDAADEWKPVDTKSVNLKPGD 243 Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 +S +++ ++ RL+ D + ++DA + AVK FQ R+GLD SG ++ T+ AMN Sbjct: 244 TSAAIKEIKIRLLRLQDF-QGDTFNESYDADLIIAVKQFQYRNGLDTSGRLNKETIMAMN 302 Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 VP+ +RI+Q+ VN+ R + L + ++ VNIP +L + V+VG+ Sbjct: 303 VPLKIRIKQILVNMERAR-WLPVSLNADFLAVNIPEFTLHVYHADSLLWSCPVVVGQKVH 361 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 QT I + I ++F+PYW IP+SI++ +++ L++ P YL + + + Sbjct: 362 QTSIFYGEIKYVVFSPYWNIPQSIVRAEVVPGLKKSPDYLLRHQMEI------------- 408 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + I RQ PG N++ K F + N Y+HDTP+ LF R + GC+R+ Sbjct: 409 --TGYKEGLPIVRQKPGPENSLGLVKFLFPNSYNIYLHDTPKKSLFGETTRDFSHGCIRI 466 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 L +LLK+ WS I+ + + K V L +VPV Y +A++ + ++ FR Sbjct: 467 MEPAKLAAFLLKNHNKWSGIKIKRAMNSGKEQYVSLEHKVPVFITYFTAFTDRRGLLNFR 526 Query: 407 DDIYGLDNVHVGII 420 DIY LD+ +I Sbjct: 527 KDIYSLDDRLARMI 540 >gi|237807403|ref|YP_002891843.1| ErfK/YbiS/YcfS/YnhG family protein [Tolumonas auensis DSM 9187] gi|237499664|gb|ACQ92257.1| ErfK/YbiS/YcfS/YnhG family protein [Tolumonas auensis DSM 9187] Length = 514 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 120/386 (31%), Positives = 183/386 (47%), Gaps = 9/386 (2%) Query: 40 INESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI 99 N S + +D L R D + E + + + WP LP Sbjct: 119 FNPSTSATGRHAYDELLQRTDPDSAINKLRPQTENYLTNRRVLLSLLSESRKAPWPALPA 178 Query: 100 RPLHLGNSSVSVQRLRERLIISGDL-----DPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + G+S ++ +R L+ SGDL P + +D AV+ FQ RHGLD Sbjct: 179 LKVRPGDSHDALPVIRNILLRSGDLQANTLTPQQMQLTTYDVQTVQAVEHFQQRHGLDAD 238 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G++ TL + +P +R L +++R L + RYVLVNIP L ++ + Sbjct: 239 GVIGRRTLNWLRLPPQVRAVILARSILR-SDLPQNMSSRRYVLVNIPEFRLRVLDKKQEI 297 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 S VIVG++ RQTPIL S I+ I+ NP W +P SI+QKD++ L +D +L ++ Sbjct: 298 FSSRVIVGQIKRQTPILSSEISSIVVNPAWHVPASILQKDLVPKLAKDKHFLDKGQFELV 357 Query: 275 DEKGKEVFVEEVDWNSPEPP-NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 D +G V + W+ E + RQ PG NA+ K + + Y+H T P F Sbjct: 358 DSQGITVDPAAMVWDGTEENFPYQLRQKPGDHNALGRYKFYLPNNDAIYLHSTSSPGYFK 417 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 +R +SGCVRV D LLKD+ W+ +++++K T + + VPV+ VY Sbjct: 418 RDLRALSSGCVRVEEADDFARLLLKDSK-WNINKLDQMLKEDTTKWLSMTDPVPVYTVYW 476 Query: 394 SAWSPKDSIIQFRDDIYGL-DNVHVG 418 +W K +QFRDDIY D+ + Sbjct: 477 RSWVDKQGQLQFRDDIYQFEDDARMA 502 >gi|160875046|ref|YP_001554362.1| peptidoglycan-binding domain-containing protein [Shewanella baltica OS195] gi|160860568|gb|ABX49102.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS195] gi|315267278|gb|ADT94131.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS678] Length = 521 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 107/361 (29%), Positives = 175/361 (48%), Gaps = 12/361 (3%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPS 127 I + + K + + + W L + L +G S + + +RL + GDL Sbjct: 160 IPTDAQYQRVLKQVTHLVQLDATEPWETLVLDEKLTVGMSHPLLDTIAKRLWLLGDLAIE 219 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 ++ + + VK FQ RHGL G++ TL +N R L N +R + Sbjct: 220 PMTNLVYSEELVVGVKRFQHRHGLKQDGVIGKQTLYWLNQSPKARAVLLAKNTIRQRVF- 278 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 E+K+ Y+L+N+PA + V+NG L S VIVG+ RQTP+L S+I+ ++ NP W +P Sbjct: 279 ERKLEPSYLLINVPAFEMILVDNGTTVLNSKVIVGKSSRQTPLLDSQISSVVLNPSWRVP 338 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKI 305 SI+++D++ +R++ YL + + D G+ V +W +F + Q PG Sbjct: 339 SSILRRDILPQIRRNGHYLNERQFDVYDYNGQLVQHMPEEWQGLASTSFPYQLVQRPGAK 398 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTP 361 NA+ K F + + Y+H T EP LFN R +SGC+R+ + +L W L+KD Sbjct: 399 NALGKYKFHFDNSFSVYLHGTSEPSLFNKDDRALSSGCIRIEKVTELAQWFKEHLVKDKR 458 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 W + + + L+ ++PVH VY +AW Q+R DIY L+ +P Sbjct: 459 LWDKLAPDVT----EPQWFSLSQKLPVHLVYWTAWLDDSGQEQYRSDIYHLEAELTNAVP 514 Query: 422 L 422 Sbjct: 515 A 515 >gi|329298736|ref|ZP_08256072.1| murein L,D-transpeptidase [Plautia stali symbiont] Length = 590 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 95/293 (32%), Positives = 150/293 (51%), Gaps = 8/293 (2%) Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + +D+ + VK FQ L G + T E +NV +R L +N+ R++ L Sbjct: 284 PSASNNVYDSTLVEGVKRFQHWQELADDGAIGPRTREWLNVSPQMRAALLALNIQRLR-L 342 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 L M ++VNIP SL NG L S VIVGR DR+TP++ S +N ++ NP W + Sbjct: 343 LPDDMH-NGIMVNIPNYSLTYYNNGNTILSSRVIVGRPDRKTPLMRSALNNVVLNPPWNV 401 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF--RQD 301 P +++++D++ ++QDP YL + ++ + + +DW+ +F + RQ Sbjct: 402 PTTLVRQDIVPKVKQDPSYLYKHGYTLLSGWSADAEVIDPSVIDWHMVSAASFPYRIRQA 461 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 PG N++ K S + Y+HDTP LF +R +SGCVRV +L LL+D Sbjct: 462 PGASNSLGRYKFNMPSSDAIYLHDTPNHGLFQRDIRALSSGCVRVNKASELADLLLQDA- 520 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 W+ I + +K T V + +PV+ Y++AW D Q+R DIY DN Sbjct: 521 GWNDSRISDTLKQGDTRYVPIRHRIPVNLYYLTAWVADDGQPQYRTDIYNYDN 573 Score = 45.6 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 45/142 (31%), Gaps = 33/142 (23%) Query: 1 MVGYLK--------INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL+ LY Y + LS IN+ +++ Sbjct: 109 MLGYLQFVANVPTQGETWLYSNVPYKLTMPSLSA-------------INQWQNAVNGGGS 155 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSV 111 F+ + P+ S KA+ + WP+L L G S V Sbjct: 156 RAFVVSLQPQHPQYAPMHSAL------KAL-----LTDNRPWPQLRDKGTLRPGQISDDV 204 Query: 112 QRLRERLIISGDLDPSKGLSVA 133 LRE L +G L + + Sbjct: 205 PALREILQRTGMLTGTHSATPT 226 >gi|222109387|ref|YP_002551651.1| erfk/ybis/ycfs/ynhg family protein [Acidovorax ebreus TPSY] gi|221728831|gb|ACM31651.1| ErfK/YbiS/YcfS/YnhG family protein [Acidovorax ebreus TPSY] Length = 533 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 120/423 (28%), Positives = 181/423 (42%), Gaps = 20/423 (4%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDR--FDNFLARVDMGIDSDIPIISKETIAQTEKAIA 83 L I + L+E + S + R LA + D I +A Sbjct: 100 LHGGRIDPARLNERYDHSRRPQPDLRAALQTALADGQIQQARDAAIPRVPMYPALRALLA 159 Query: 84 FYQDILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDP-------SKGLSV 132 Y+ + + W P LP R L G + L ERL+ GDL P + Sbjct: 160 HYRALGAHPAWAQPLPALPGRKLTPGQPWEGLGVLAERLVALGDLPPQPTGEPPAASAPA 219 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 + + A FQ RHGL+ G++ ++TL A+NVP R Q+ + + R++ G Sbjct: 220 QYTPVLVEAATAFQRRHGLEADGVLGATTLAALNVPPAARAEQIALQMERLR-WTPVLQG 278 Query: 193 LRYVLVNIPAASLEAVE--NGKVGLR--STVIVGRV-DRQTPILHSRINRIMFNPYWVIP 247 R + VN+P L A E G++ LR VIVG+ D +TP+ + I F+PYW IP Sbjct: 279 PRMIAVNVPEYRLRAYEYAGGRITLRLSMAVIVGKALDTRTPLFDEDMQSIEFSPYWNIP 338 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI + + + LR+DP YL + + G + RQ PG +NA Sbjct: 339 PSIARGETVPRLRRDPGYLARQGMEFVSAAGVSTDTTPEMLGAVVAGQARIRQRPGPLNA 398 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K + +N Y+H T P LF R + GCVRV + L ++L+D PTW+ Sbjct: 399 LGDIKFVLPNNDNIYLHHTSAPTLFGRSRRDLSHGCVRVGEPVALAQFVLQDDPTWTVER 458 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 I + K V+L VPV +I+ +D F D+YG D ++ P Sbjct: 459 IRAAMAQPKPVFVRLPHPVPVIITHITVVV-QDGRPHFYGDLYGHDRKLASLLRQHSAKP 517 Query: 428 IDS 430 D+ Sbjct: 518 YDA 520 >gi|295688991|ref|YP_003592684.1| ErfK/YbiS/YcfS/YnhG family protein [Caulobacter segnis ATCC 21756] gi|295430894|gb|ADG10066.1| ErfK/YbiS/YcfS/YnhG family protein [Caulobacter segnis ATCC 21756] Length = 468 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 105/364 (28%), Positives = 169/364 (46%), Gaps = 20/364 (5%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRE 116 R+ + S P + + Y+ + ++GGW +P P L G V+ LR Sbjct: 121 RLAAWLASLPPPYTG--YQTLMTGLTTYRGLAAKGGWRVVPAGPSLTEGLVDPRVKALRA 178 Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 RL + D + S +DA + AV+ Q R GL+P G+V TL A+NVPV+ R+ Q+ Sbjct: 179 RLAVE-DPTVALTGSDVYDAALVQAVQRAQKRFGLNPDGVVGPGTLNALNVPVERRVDQI 237 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 + N+ R + L Q + + VNI AA + + L + GR +TP+L S I+ Sbjct: 238 EANMERWR-WLPQTLPADRIQVNIAAAVMSVFQQDTPTLTMRAVTGRPGDETPMLSSMIH 296 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF 296 I+ NP W +P+SI K++ + +P YL N+ +I Sbjct: 297 SIVLNPPWNVPQSIATKELWPKEKANPGYLARNDFIVIPTGD---------------GGS 341 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 +Q G A+ K +F + Y+HDTP F++ R + GCVR++ I+L + Sbjct: 342 RLQQKAGPKAALGQVKFDFNNPYGVYLHDTPSRSKFDSFSRLASHGCVRLQKPIELIKLM 401 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 + P W+ I+ + + T KL ++ V +Y +A+ D + FRDD YG D Sbjct: 402 MAGDPVWTPEKIDATLASGDTVRAKLPQQMAVFLLYWTAYVTPDGQVNFRDDPYGWDKEL 461 Query: 417 VGII 420 V I Sbjct: 462 VQRI 465 >gi|332525152|ref|ZP_08401329.1| peptidoglycan-binding domain-containing protein [Rubrivivax benzoatilyticus JA2] gi|332108438|gb|EGJ09662.1| peptidoglycan-binding domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 547 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 112/407 (27%), Positives = 182/407 (44%), Gaps = 22/407 (5%) Query: 43 SYHSIVNDR--FDNFLA--RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW---- 94 + R D LA + + + P++ A+ +A+A Y+ + W Sbjct: 145 PERPPFDARAVLDAGLAAGSLALAVRRAEPVL--PQYAELRQALARYRTLEHDPAWAAPL 202 Query: 95 PELP----IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 P LP R L G + + L RL+ GDL + + V+ FQ RHG Sbjct: 203 PPLPQVGRTRKLEPGAAWPGLPALAARLVALGDLPAGPHAGTVYAEPLVGGVRRFQQRHG 262 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE- 209 + G++ ++T + V R QL + L R++ R V+VNIP L A E Sbjct: 263 VSADGVIGAATFSRLEVKPAARAEQLVLALERLR-WTPLLESRRMVVVNIPEFVLRAYEV 321 Query: 210 -NGK--VGLRSTVIVGRV-DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 +G+ V R V+VG+ D++TP++ +++ I F+PYW +P SI++ + + LR+DP Y Sbjct: 322 QDGRITVVQRMRVVVGQALDKRTPLIDAQMRAIEFSPYWNVPPSIVRAETLPKLRRDPDY 381 Query: 266 LKDNNIHMIDEKGKE-VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 L + G V ++ + RQ PG NA+ K F + Y+H Sbjct: 382 LAREGFEFVAGDGSVHGEVSAEALDALAAGRWRIRQRPGPRNALGDIKFVFPNAEQIYLH 441 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLAT 384 TP LF R + GCVR+ + + L +++L+D P W I E + ++ ++LAT Sbjct: 442 HTPSTALFARDRRDFSHGCVRIEDPLALAMFVLRDQPDWPEARIREAMDAGESRTLRLAT 501 Query: 385 EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPIDSD 431 V V Y +A KD + F DDIY D + + +D Sbjct: 502 PVRVLIAYGTALV-KDGQVYFFDDIYRQDPRLQAALRERAAPAVRAD 547 >gi|157961780|ref|YP_001501814.1| peptidoglycan-binding domain-containing protein [Shewanella pealeana ATCC 700345] gi|157846780|gb|ABV87279.1| Peptidoglycan-binding domain 1 protein [Shewanella pealeana ATCC 700345] Length = 451 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 100/341 (29%), Positives = 167/341 (48%), Gaps = 4/341 (1%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + I Q + + W + L G S+ + + RL + GD + S Sbjct: 108 YLHLQNRIRHLQWLAEQDWWQVIESERLIRPGESNPIIPDVVRRLWLLGDASSAATGSNE 167 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + A+K FQ+RHGL ++ TL+ +NVP + R L N ++ + + Q+ Sbjct: 168 LNLPIVDALKRFQLRHGLKADAIIGPETLKWLNVPPEQRASILAKNFIQRAEFMAQR-DD 226 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R++++NIPA +E ++G++ L S VIVG+ R TPIL S I+ ++ NP W +P+ I+ Sbjct: 227 RFLVINIPAFEMELFDHGELELASRVIVGKPYRPTPILSSSISNVVINPSWRVPKKIMYN 286 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMAST 311 D++ +R+D Y+ N + D V W+ F FR Q PG N + Sbjct: 287 DLLPQVRKDGNYISQRNFDVFDRNNNLVMRTAEQWSDLAKGPFPFRFVQRPGTNNTLGRY 346 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F + + Y+HDT +P LF R +SGC+R+ N+ L W+ + + ++ Sbjct: 347 KFYFPNDFSVYLHDTSDPKLFQRSNRALSSGCIRIENVQGLANWMAANLVKDKQTWVDRH 406 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 ++T L + + VH VY +AW + Q+RDDIY L Sbjct: 407 ADRKRTQWFALKSSLNVHLVYWTAWIDGSNQAQYRDDIYQL 447 >gi|300022478|ref|YP_003755089.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299524299|gb|ADJ22768.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 423 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 138/374 (36%), Positives = 212/374 (56%), Gaps = 14/374 (3%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP--------LHLG 105 +F+ + +SK IA T+ AI Y +I+++GGWP+LP P L G Sbjct: 45 DFVREWEANPPKGYATLSKANIAATKTAIQRYTNIVAQGGWPQLPEPPNKTPRDSLLQYG 104 Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + +V LR+RL SGDL S FD+ V+ A+K FQ +GL P+G+ D T+ A+ Sbjct: 105 TTDAAVALLRQRLATSGDLTGGNISSTYFDSDVDKALKRFQASNGLTPTGIADKRTIVAL 164 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 NVP D R++QL+ N+ R+++ + G +YV+VNIPAA +EAV+NG++ R +VG+ D Sbjct: 165 NVPADARLKQLKANVSRLEEFTAKA-GKKYVVVNIPAAQVEAVQNGQIVARYAAVVGKAD 223 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR----QDPQYLKDNNIHMIDEKGKEV 281 R TP+LH+ I + FNP W +P ++I +D++ R + L +I GK+V Sbjct: 224 RPTPLLHTPITDLSFNPVWRLPPTVISEDLIPRGREMQSKGQNVLLKFHIDAY-SNGKKV 282 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 +++W++ +P + + Q PGK N + KI F S ++ YMHDTP +F R +S Sbjct: 283 DPAKINWSTVKPGTYTYSQQPGKENPLGFLKINFDSAHSVYMHDTPSDRIFGRNYRSASS 342 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GC+RV NI +L WLL + W I + + ++L V + FVYISAW+ D Sbjct: 343 GCIRVHNIENLAAWLLAEQRGWDSERIASMKANGERLDLRLKKPVQLLFVYISAWATPDG 402 Query: 402 IIQFRDDIYGLDNV 415 I+QFR D+Y D + Sbjct: 403 IVQFRRDLYQKDGI 416 >gi|332532859|ref|ZP_08408732.1| hypothetical protein PH505_aj00520 [Pseudoalteromonas haloplanktis ANT/505] gi|332037705|gb|EGI74156.1| hypothetical protein PH505_aj00520 [Pseudoalteromonas haloplanktis ANT/505] Length = 441 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 115/357 (32%), Positives = 178/357 (49%), Gaps = 10/357 (2%) Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 S + I +TEKAI +YQ+I+++GG+ L L LG+++ V L +RL DL + Sbjct: 70 YSAQLIERTEKAINWYQEIVNKGGFTHLYNDELLELGSNNKQVSLLAQRLYQERDLKTNV 129 Query: 129 GLSV--AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 FD +E AVK FQ RHGL G V T ++NVP ++ +L++N RI Sbjct: 130 CDEAICTFDKDIEQAVKQFQSRHGLKVDGRVGKRTFASLNVPAQQKLDKLKLNFYRITNF 189 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 +YV VNIP SL V+ G V L++ VIVG+ +TP I + + NP W I Sbjct: 190 AGAS-DEQYVYVNIPEYSLRFVKAGDVKLKNNVIVGKPSWETPAFSDEIEKFVVNPEWRI 248 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEK---GKEVFVEEVDWNSPEPPNF--IFRQD 301 P SI K++ + +DP YL NNI + + V +DW+S +P F + Sbjct: 249 PTSIATKEIAPKVAEDPDYLVKNNIEIRKNSYLDSQTVNPSNIDWDSIKPYQFDHFLVKR 308 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK-DT 360 G+ N + K F + Y+HDTP F+ R + GC+R+ L ++K + Sbjct: 309 AGEENPLGEVKYLFPNAEAIYVHDTPAKHRFSQANRALSHGCIRIEKPFSLAREIIKYEG 368 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 + +++ + T L +P+H VY +AW ++ ++ FRDDIY D + Sbjct: 369 EAQTLNNMDTALAQNSTQTFYLDEPLPIHLVYWTAWVDENKLVNFRDDIYQRDKKAL 425 >gi|260753690|ref|YP_003226583.1| ErfK/YbiS/YcfS/YnhG family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553053|gb|ACV75999.1| ErfK/YbiS/YcfS/YnhG family protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 502 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 109/409 (26%), Positives = 188/409 (45%), Gaps = 21/409 (5%) Query: 15 FVYLILPMGLSLVEKPIHASVLDE--IINESYHSIVNDRFDNFLARVDMGIDSDIPIISK 72 + L ++ + A+ D+ + + D + + +++P Sbjct: 98 LISASLDYARAIHSGRLSANDFDKNWGMKPDPYDPWPDFKNAVNSNTLGDWAANLPPP-Y 156 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 A + + +Y+ I +GGWP +P L +G+ + V+ LR RL I D + S Sbjct: 157 SGYAGLKNGLIYYRAIAEKGGWPVVPTGADLTVGSDNPRVKTLRRRLAIE-DKELPDNGS 215 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 FDA +++AVK Q R+GL+P+G+V TL+A+N PV RI Q+ N+ R + L + + Sbjct: 216 SHFDAALKAAVKRAQQRYGLNPTGVVSGQTLQALNQPVKSRIHQIMANMERWR-WLPRNL 274 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 + VN+ AA L E + + + GR +TP+L S I ++ NP W +P SI Sbjct: 275 PENRIQVNVAAAVLTLFEKNQPVMSMKSVTGRPGNETPMLRSTIYSLVINPPWNVPDSIA 334 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 +K++ + P YL+ +I E G+ +Q PG N++ Sbjct: 335 KKELWPKEKAHPGYLQAAGFKIIGESGQGQ---------------RLQQKPGPRNSLGQL 379 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K +F + + Y+HDTP F+ R E+ GC+R+ + + L LL P W+ + Sbjct: 380 KFDFPNSYSVYLHDTPGRGAFSRYGRLESHGCIRLEHPVALGERLLAADPAWTGDRLRSE 439 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + +T V+L V V Y +A+ ++ + FR D Y D + I Sbjct: 440 IDKNETERVRLKQPVAVFLFYWTAFGNGENALSFRSDPYKWDELLAQKI 488 >gi|212635582|ref|YP_002312107.1| hypothetical protein swp_2794 [Shewanella piezotolerans WP3] gi|212557066|gb|ACJ29520.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 464 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 108/352 (30%), Positives = 182/352 (51%), Gaps = 4/352 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + Q + I+ + + W + I L G S S+ + +RL++ GD S + Sbjct: 106 DNYLQLQNRISHLRWLAEHQQWTPIYIEGLIRPGMSHKSLLAIADRLMLLGDGVASAQSA 165 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 + D + + V+ FQ RHGL+P G++ TL+ +NV R R L + ++ + + Q+ Sbjct: 166 ESLDDRLVNGVRRFQRRHGLNPDGIIGPETLKWINVDPMERARILAKSFVQKAEFMSQR- 224 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 +++++NIPA +E + GKV L S VIVG+ RQTP+L S I+ ++ NP W +P+ I+ Sbjct: 225 AEQFLVINIPAYEMELISQGKVELESRVIVGKPYRQTPLLSSAISNVVINPSWRVPKKIL 284 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMA 309 D++ +R D Y++ + D +G +V W F FR Q PG N + Sbjct: 285 FNDLLPQVRIDGNYIEQREFDVFDREGNQVVRSAQQWRDLAAGPFPFRFVQRPGVNNTLG 344 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIE 369 K F + + Y+HDT +P LFN R +SGC+R+ N+ L W+ + + ++ Sbjct: 345 RYKFYFPNDYSVYLHDTSDPKLFNKSYRALSSGCIRIENVEGLANWMAANLVKDKQTWVD 404 Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 + KT L + + VH VY +AW KD++ QFR+DIY +++ P Sbjct: 405 RHIDRNKTQWFALNSTLNVHLVYWTAWIDKDNLAQFRNDIYQKQSINDASDP 456 >gi|119471875|ref|ZP_01614183.1| hypothetical protein ATW7_04554 [Alteromonadales bacterium TW-7] gi|119445248|gb|EAW26538.1| hypothetical protein ATW7_04554 [Alteromonadales bacterium TW-7] Length = 453 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 126/426 (29%), Positives = 199/426 (46%), Gaps = 20/426 (4%) Query: 3 GYLKINK--ILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVD 60 G+ K NK + FV L L+ VL + + S + + R+ Sbjct: 21 GFTKTNKATLKGALFVSLASMFASPLLANDDLDGVL--LASSSLTTYSSQRY------TQ 72 Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLI 119 S + I +TEKAI +YQ+I++RGG+ LP L LG++S +V L RL Sbjct: 73 TKDSYYFDQYSAQLIKRTEKAINWYQEIVNRGGFISLPASELLELGSNSKAVSLLAMRLF 132 Query: 120 ISGDLDPS--KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 DL + FD ++E AVK FQ RHGL+ G V +T +N+ + ++ +L+ Sbjct: 133 QEQDLRTNVCSKAPCIFDKHIERAVKQFQHRHGLNVDGRVGKNTFAKLNISAEQKLNKLK 192 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 +N RI +YV VNIP L V+ G V L++ VIVG+ +TP I + Sbjct: 193 LNFYRITNF-AGSSDEQYVYVNIPEYQLRYVKVGDVKLQNNVIVGKPSWETPAFSDEIEK 251 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK---GKEVFVEEVDWNSPEPP 294 + NP W IP SI +++ + +DP YL NNI + + V +DW+S +P Sbjct: 252 FVVNPEWRIPISIATREIAPKVAEDPDYLVKNNIEIRKNSYIDSQTVNPNNIDWDSIKPY 311 Query: 295 NF--IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 F + G+ N + K F + Y+HDTP F+ R + GC+R+ + L Sbjct: 312 QFDHFLVKRAGEKNPLGEVKYLFPNPEAIYVHDTPAKQRFSQTRRALSHGCIRIEDPFSL 371 Query: 353 DVWLLKDTP-TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 ++K ++ + + T L +P+H VY +AW ++ ++ FRDDIY Sbjct: 372 AQEIIKHQGEEYALEQVNDARSENSTQTFYLDEPLPIHLVYWTAWVDENKLVNFRDDIYK 431 Query: 412 LDNVHV 417 D + Sbjct: 432 RDQKAL 437 >gi|254230281|ref|ZP_04923670.1| putative peptidoglycan binding domain protein [Vibrio sp. Ex25] gi|151937178|gb|EDN56047.1| putative peptidoglycan binding domain protein [Vibrio sp. Ex25] Length = 345 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 92/316 (29%), Positives = 153/316 (48%), Gaps = 8/316 (2%) Query: 103 HLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +G+ + L ER+ + G D+ + +D +E AVK FQ HGL G++ +T Sbjct: 30 RVGDQLENKPLLIERMEVVGVDVSYLDITTQQYDEELELAVKEFQRIHGLKEDGVIGPNT 89 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 + +N R+ L +N R + + + V VN+P + +G+ S V+V Sbjct: 90 IRWINFSPQERLHLLALNSERSRIWSKDR--DNVVFVNVPGYEVTYWHDGQPLFESKVVV 147 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GK 279 GR R+TPI+ ++ ++ NP W +P +I+ KD++ ++++P YL ++NI +I + Sbjct: 148 GRASRKTPIMSGTLDSVILNPTWNVPWTIMVKDIIPKVKRNPMYLINHNIQIIRSWTSNE 207 Query: 280 EVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 + ++W + P F +R Q G NA+ K + Y+HDTP LF R Sbjct: 208 IIDPTTINWATVNPRTFPYRMRQASGLHNALGLYKFNMPNPQAIYLHDTPSKNLFERDRR 267 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGCVRV + L L K R + R T V L + VH +Y +AW Sbjct: 268 AFSSGCVRVEHADQLAELLFKTQGLEERLAKKRESTRRSNTSVPLGERIQVHIIYQTAWL 327 Query: 398 PKDSIIQFRDDIYGLD 413 ++ + +RDDIY D Sbjct: 328 -EEGTLYYRDDIYKYD 342 >gi|312887255|ref|ZP_07746859.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] gi|311300567|gb|EFQ77632.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] Length = 544 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 98/371 (26%), Positives = 174/371 (46%), Gaps = 21/371 (5%) Query: 52 FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWP--ELPIRPLHLGNSSV 109 D+ + + P+ + Y + R W L + G+++ Sbjct: 186 LDSLIKMPSKQAAAAEPVY--RQYELLRSYLRKYYLLNERDKWSNITLTGKVFKPGDTAA 243 Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 + +++RL + D L A++A +++A+ FQ R+GL +G+++ T+ MNVP+ Sbjct: 244 VIATVKKRLYLLEDFK-GDTLDRAYNADLDTAILQFQSRNGLLANGLLNKETVAEMNVPL 302 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 RI+Q+ VN+ R + L + Y+ VNIP L + V+VG+ QT Sbjct: 303 KKRIQQILVNMERCR-WLPISLNSDYLAVNIPEFKLHVFHADSLLWSCNVVVGQTMHQTT 361 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 + + + ++F+PYW +P SI+QK+++ +++ YL + + + G + + Sbjct: 362 VFYGDVKYVVFSPYWNVPPSIVQKEVVPEMKRHRDYLSTHRMQI---TGYADGLPTI--- 415 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 RQ PG N++ K F + N Y+HDTP LF R + GC+RV+N Sbjct: 416 ---------RQLPGPENSLGLVKFLFPNSYNIYLHDTPSKSLFGESARAFSHGCIRVQNP 466 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 L +LLKD W I+ + K V L +VPV Y +A++ ++ + FR DI Sbjct: 467 TKLANFLLKDQKNWDAQKIDVAMHAGKEQYVTLQNKVPVFIAYFTAFTDGNNKLNFRKDI 526 Query: 410 YGLDNVHVGII 420 Y LD+ ++ Sbjct: 527 YNLDDHLASML 537 >gi|87120480|ref|ZP_01076374.1| hypothetical protein MED121_22022 [Marinomonas sp. MED121] gi|86164123|gb|EAQ65394.1| hypothetical protein MED121_22022 [Marinomonas sp. MED121] Length = 561 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 98/384 (25%), Positives = 178/384 (46%), Gaps = 17/384 (4%) Query: 58 RVDMGIDSDIPIISK--ETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRL 114 + + +P ++ +K + +YQDI ++ + PL LG+ + +L Sbjct: 182 NTASDMVNYLPQLAPRHPDYQILQKWLVYYQDISAKQKDIRVTAGVPLSLGDQGPRIAQL 241 Query: 115 RERLIISGDLDPSKGL--SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 R RL+ GD+ S FD ++ A+ FQ RH L G S T+E +N+P+ LR Sbjct: 242 RARLVQLGDIRFSTRTIQEDKFDKKLKQALINFQRRHDLTADGHAGSQTIEMLNIPISLR 301 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 +Q+ NL R + L ++ + V++ + + N + V++G+ +R+TP+ Sbjct: 302 AKQIAYNLERWR-WLPTELEAERIWVDLTDYKVHTILNDQHS-TMKVVIGKKERKTPVFK 359 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK---GKEVFVEEVDWN 289 + ++ NP W +P I Q+ ++ +P YL + + KE+ +DW Sbjct: 360 GEMTYMVTNPTWRVPHRIAQESLLPKAHANPNYLIEQGYKVYSSWTIGAKELDPSLIDWR 419 Query: 290 SPEPPN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 P N + F Q P + NA+ K F +RN Y+HDTP LF R +SGC+R+ Sbjct: 420 KVTPENLKYRFEQTPDEGNALGLYKFMFPNRNEIYLHDTPAKHLFKESNRAFSSGCIRLE 479 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 L+ + ++ +++++T V L ++PV+ VY + ++ + FR Sbjct: 480 KPQLFANNLVAGSKQ--VEALQNAIQSKETKVVSLPKQLPVYIVYFTVVPDRNGMPGFRK 537 Query: 408 DIYGLDNVH---VGIIPLPEDHPI 428 DIY D + +G P P + + Sbjct: 538 DIYERDILMEEAMGYFPSPANAAL 561 >gi|256830357|ref|YP_003159085.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfomicrobium baculatum DSM 4028] gi|256579533|gb|ACU90669.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfomicrobium baculatum DSM 4028] Length = 543 Score = 384 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 101/405 (24%), Positives = 177/405 (43%), Gaps = 25/405 (6%) Query: 40 INESYHSIVNDRFDNFL--------ARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 I E++ DRFD R+ + P + + +A+A Y+ + Sbjct: 136 IQENFTPPAPDRFDPLAHLQRAVREKRLREAVREAAPQV--PLYGRLREALAQYRQLSED 193 Query: 92 G----GW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W P LP L +G S + + RLI GDL ++ ++ ++ + Sbjct: 194 PVFSQLWQSSLPPLPNGKLEIGESYAGMPLVVLRLIALGDLPRETVMTERYEGHIVKGIM 253 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 FQ+RHGL+P G++ T + V R+RQ+++++ R++ R + VNIP Sbjct: 254 DFQVRHGLEPDGVIGRKTYAQLGVTPSARVRQIELSMERLR-WTPLLHAPRMIAVNIPEH 312 Query: 204 SLEAVE--NG--KVGLRSTVIVGRV-DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 LEA E NG +V VI+G + +TP+ R+ I F+PYW +P SI + +++ Sbjct: 313 VLEAYEVQNGTVQVQTTMRVIIGSALNMRTPLFDGRMRSIEFSPYWNVPLSIARSEVVPK 372 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVF-VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 + +DP Y + G+ + + D + RQ PG NA+ K F + Sbjct: 373 ILRDPSYFVRQGFEFVAADGQIITTLSMDDLEAVRSGQMRIRQRPGPRNALGDIKFIFPN 432 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 +++ ++H TP LF R + GC+RV + + L ++L+ W I E + + Sbjct: 433 KDSIFLHHTPTTHLFEKQRRDLSHGCIRVEDPVGLAKFVLQHDQVWGEERIREAMSAGVS 492 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + ++L V Y + + F DIYG D + + Sbjct: 493 STLRLREPPQVVLAYNTVQVKNGGRVHFFQDIYGQDKLLDQALRR 537 >gi|304411335|ref|ZP_07392949.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS183] gi|307305343|ref|ZP_07585091.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica BA175] gi|304350190|gb|EFM14594.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS183] gi|306911646|gb|EFN42071.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica BA175] Length = 521 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 106/355 (29%), Positives = 173/355 (48%), Gaps = 12/355 (3%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + K + + + W L + L +G S + + +RL + GDL + Sbjct: 166 YQRVLKQVTHLVQLDATEPWETLVLDEKLTVGMSHPLLDTIAKRLWLLGDLAIEPKTNFV 225 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + VK FQ RHGL G++ TL +N R L N +R + E+K+ Sbjct: 226 YSEELVVGVKRFQQRHGLKQDGVIGKQTLYWLNQSPKARAVLLAKNTIRQRVF-ERKLEP 284 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 Y+L+N+PA + V+NG L S VIVG+ RQTP+L S+I+ ++ NP W +P SI+++ Sbjct: 285 SYLLINVPAFEMILVDNGTTVLNSKVIVGKSSRQTPLLDSQISSVVLNPSWRVPSSILRR 344 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAST 311 D++ +R++ YL + + D G+ V +W +F + Q PG NA+ Sbjct: 345 DILPQIRRNGHYLNERQFDVYDYNGQLVQHMPEEWQDLASTSFPYQLVQRPGAKNALGKY 404 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTPTWSRYH 367 K F + + Y+H T EP LFN R +SGC+R+ + +L W L+KD W + Sbjct: 405 KFHFDNSFSVYLHGTSEPSLFNKDDRALSSGCIRIEKVTELAQWFKEHLVKDKRLWDKLA 464 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + + L+ ++PVH VY++AW Q+R DIY L+ +P Sbjct: 465 PDVT----EPQWFSLSQKLPVHLVYLTAWLDDSGQEQYRSDIYHLEAELTNAVPA 515 >gi|254490473|ref|ZP_05103659.1| Putative peptidoglycan binding domain protein [Methylophaga thiooxidans DMS010] gi|224464217|gb|EEF80480.1| Putative peptidoglycan binding domain protein [Methylophaga thiooxydans DMS010] Length = 501 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 111/361 (30%), Positives = 180/361 (49%), Gaps = 20/361 (5%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGL- 130 Q ++ Y+ RGGW +P PL G+S V LR RLI +PS L Sbjct: 148 PQYHQLTHFLSQYRGYQLRGGWQTVPTMPLLRPGDSHQHVPSLRARLITE---NPSLNLI 204 Query: 131 ----SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + +D + VK FQ RHGL G+V S T A+N VD I +++VNL R + Sbjct: 205 EVEQTTIYDRQLVETVKQFQARHGLKIDGIVGSETRAALNQSVDDLITKIRVNLERFR-W 263 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 L +G RY+LVN+ + L AVE+G++ L VIVG+ R TP +S + ++ NPYW + Sbjct: 264 LPDDLGKRYLLVNLGSHQLSAVEDGQIKLNMKVIVGKSQRATPSFNSAMTHLVINPYWNV 323 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEP----PNFIFR 299 P + ++D++ + +P Y N ++ + V ++W+ + + Sbjct: 324 PHKLARRDLLPKQQANPDYFFLNEFNLFLRNAEVHTPVDPYRINWDEVSALSSEFPYRLQ 383 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG++NA+ K F + N Y+HDTP+ LF+ R +SGC+RV + + L + L + Sbjct: 384 QRPGELNALGRLKFMFPNPWNIYLHDTPDKALFSENQRNFSSGCIRVEDPLALGQFSLNE 443 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGI 419 S ++ + + + KL T +PV+ VY + W + ++F D YG D+ Sbjct: 444 NNAQS--WLQSQIDSGQNRGRKLETPLPVYAVYFTIWPDQ-GEVRFSPDPYGRDSTIAKR 500 Query: 420 I 420 + Sbjct: 501 L 501 >gi|120434782|ref|YP_860468.1| peptidoglycan binding domain-containing protein [Gramella forsetii KT0803] gi|117576932|emb|CAL65401.1| protein containing peptidoglycan binding-like domain [Gramella forsetii KT0803] Length = 543 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 115/413 (27%), Positives = 199/413 (48%), Gaps = 10/413 (2%) Query: 8 NKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFL---ARVDMGID 64 N +L L + L + + + EI ++I ++ + +D Sbjct: 125 NDLLELLLTDSYLRLAKDLATGKLDPTKIHEIWGTPLNTIDAEKVLEKAISEGNIHKSLD 184 Query: 65 SDIPIISKETIAQTEKAIAFYQ-DILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISG 122 S P Q + A+ ++ + + G ++ L G++S + + +RL G Sbjct: 185 SLKP--DHLVYHQLKSALNKFKKNGIEEGPTTKISTGKLIRPGDNSDRMPSIAKRLSELG 242 Query: 123 DLDP-SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 + S + ++ ++ AVK FQ+ H L ++ S+T+ +N+ R Q+ VNL Sbjct: 243 YFNGISDSTNTIYNEDIQKAVKEFQLDHDLQEDALLGSTTISNLNLTRRDRYHQILVNLE 302 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R + + +G Y++VNIP L ++ ++VG R+TPI I I++N Sbjct: 303 RWR-WYPKNLGKHYIIVNIPDYELSVIKEEDTIRTHKIMVGTEVRKTPIFSDEIGYIIYN 361 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W IP +I + D++ ++D Y + NI + D +G +V VDWNS + + +RQ Sbjct: 362 PTWTIPPTIKKNDVIPGAKKDIGYFQKKNIKIYDSEGTDVDPASVDWNSSKARGYTYRQP 421 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 G N + KI + + Y+HDTP LF R ++SGCVRV++ + L +LL D Sbjct: 422 AGPTNPLGIVKIIYPNEYLIYLHDTPSRSLFEKNARAQSSGCVRVQDALGLAKYLLSDQD 481 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 ++ IEE++K+ KTT + + +V VH Y + + KD I+F DDIY LD Sbjct: 482 SYDDEKIEEILKSGKTTQITVKQKVKVHHFYWTVYQKKD-AIKFIDDIYNLDQ 533 >gi|153000449|ref|YP_001366130.1| peptidoglycan-binding domain-containing protein [Shewanella baltica OS185] gi|151365067|gb|ABS08067.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS185] Length = 521 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 106/361 (29%), Positives = 174/361 (48%), Gaps = 12/361 (3%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPS 127 I + + K + + + W L + L +G S + + +RL + GDL Sbjct: 160 IPTDAQYQRVLKQVTHLVQLDATEPWETLVLDEKLTVGMSHPLLDTIAKRLWLLGDLAIE 219 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 ++ + + VK FQ RHGL G++ TL +N R L N +R + Sbjct: 220 PMTNLVYSEELVVGVKRFQHRHGLKQDGVIGKQTLYWLNQSPKARAVLLAKNTIRQRVF- 278 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 E K+ Y+L+N+PA + V+NG L S VIVG+ RQTP+L S+I+ ++ NP W +P Sbjct: 279 ESKLEPSYLLINVPAFEMILVDNGTTVLNSKVIVGKSSRQTPLLDSQISSVVLNPSWRVP 338 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKI 305 SI+++D++ +R++ YL + + D G+ V +W +F + Q PG Sbjct: 339 SSILRRDILPQIRRNGHYLNERQFDVYDYNGQLVQHMPEEWQGLASTSFPYQLVQRPGAK 398 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTP 361 NA+ K F + + Y+H T EP LF+ R +SGC+R+ + +L W L+KD Sbjct: 399 NALGKYKFHFDNSFSVYLHGTSEPSLFSKDDRALSSGCIRIEKVTELAQWFKEHLVKDKR 458 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 W + + + L+ ++PVH VY +AW Q+R DIY L+ +P Sbjct: 459 LWDKLAPDVT----EPQWFSLSQKLPVHLVYWTAWLDDSEQEQYRSDIYHLEAELTNAVP 514 Query: 422 L 422 Sbjct: 515 A 515 >gi|116620897|ref|YP_823053.1| peptidoglycan binding domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116224059|gb|ABJ82768.1| Peptidoglycan-binding domain 1 protein [Candidatus Solibacter usitatus Ellin6076] Length = 401 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 105/360 (29%), Positives = 175/360 (48%), Gaps = 12/360 (3%) Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDL-- 124 P + + +T +A+ Y+ + + +P+ + G++ L RL + GDL Sbjct: 34 PSVPPDEYERTLRALDQYRALAAAPDEVFVPVTGTVKPGDAYSDAPLLIRRLSLLGDLAA 93 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 D S ++ + AVK FQ RHGL P G ++++TL +NVP+ R+RQL+++ R + Sbjct: 94 DAVPSDSDVYEGELVEAVKRFQSRHGLKPDGRIEATTLGQLNVPLCARVRQLELSAERWR 153 Query: 185 KLLEQKMGLRYVLVNIPAASLEAV----ENGKVGLRSTVIVGR-VDRQTPILHSRINRIM 239 + VL N+P L A L V+VG+ D ++PIL S++ ++ Sbjct: 154 RHPYDPTRPAIVL-NLPEFRLRAYGGTDAGSDPELEMKVVVGKAPDHKSPILLSQLQAVI 212 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK---EVFVEEVDWNSPEPPNF 296 F PYW +P SI + +++ L+R+DP ++ N ++ +G+ E + E Sbjct: 213 FRPYWKVPVSIQRNELLPLIRKDPAWVSANRFELVTPQGEVAEEEKLSEETLEDISTGKL 272 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 RQ PG N++ K F + YMHDT LF R + GC+RV DL W+ Sbjct: 273 QLRQKPGPKNSLGLVKFLFPNEYGVYMHDTAAHSLFARERRDLSHGCIRVEKPEDLAAWV 332 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 L++ W R IEE ++ + VK+ + + +Y +A K+ + F DIYG D V Sbjct: 333 LREQSDWPRERIEEAMQGTEPVSVKVKRPIQIVMMYSTASVMKNGEVHFFRDIYGEDAVL 392 >gi|120598924|ref|YP_963498.1| peptidoglycan binding domain-containing protein [Shewanella sp. W3-18-1] gi|120559017|gb|ABM24944.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. W3-18-1] Length = 484 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 107/354 (30%), Positives = 171/354 (48%), Gaps = 12/354 (3%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 K I+ + S+ W L + L +G + V + +RL + GD+ + Sbjct: 129 YQAVLKKISQLIQLESQFSWETLMLENKLTVGQTHPIVNTIAKRLWLLGDMPKEVDVEQV 188 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + +K FQ+RHGL G++ TL +N R L N +R + +K+ Sbjct: 189 YTDELMLGIKRFQLRHGLQTDGVIGKQTLYWLNQSPRQRAVLLARNELRQRIF-SRKLTP 247 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 RY+L+N+PA ++ VE + L S VIVG+ RQTPIL S+I+ I+ NP W +P SI+++ Sbjct: 248 RYLLINVPAFEMKLVEQEQTVLTSKVIVGKSSRQTPILDSQISSIVLNPSWRVPSSILRR 307 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAST 311 D++ +R+D YL+D + D G+ +F +W F + Q PG NA+ Sbjct: 308 DILPHIRKDGYYLQDREFDVYDYSGQLIFHTTEEWQELASSRFPYQLVQRPGPKNALGKY 367 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTPTWSRYH 367 K F + + Y+H T EP LF R +SGC+R+ + +L W L+KD W R Sbjct: 368 KFHFDNSFSVYLHGTSEPALFKRENRALSSGCIRIEKVNELAQWFKRNLVKDKGLWDRL- 426 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 L+ ++PVH VY +AW +R+DIY L+ + Sbjct: 427 ---APNVTDPQWFALSEKLPVHLVYWTAWLDDKGQDHYRNDIYHLEAEFTNAVT 477 >gi|146292990|ref|YP_001183414.1| peptidoglycan binding domain-containing protein [Shewanella putrefaciens CN-32] gi|145564680|gb|ABP75615.1| Peptidoglycan-binding domain 1 protein [Shewanella putrefaciens CN-32] Length = 484 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 107/354 (30%), Positives = 171/354 (48%), Gaps = 12/354 (3%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 K I+ + S+ W L + L +G + V + +RL + GD+ + Sbjct: 129 YQAVLKKISQLIQLESQFSWETLMLENKLTVGQTHPIVNTIAKRLWLLGDMPKEVDVEQV 188 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + +K FQ+RHGL G++ TL +N R L N +R + +K+ Sbjct: 189 YTDELMLGIKRFQLRHGLQTDGVIGKQTLYWLNQSPRQRAVLLARNELRQRIF-SRKLTP 247 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 RY+L+N+PA ++ VE + L S VIVG+ RQTPIL S+I+ I+ NP W +P SI+++ Sbjct: 248 RYLLINVPAFEMKLVEQEQTVLTSKVIVGKSSRQTPILDSQISSIVLNPSWRVPSSILRR 307 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAST 311 D++ +R+D YL+D + D G+ +F +W F + Q PG NA+ Sbjct: 308 DILPHIRKDGYYLQDREFDVYDYSGQLIFHTPEEWQELASSRFPYQLVQRPGPKNALGKY 367 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTPTWSRYH 367 K F + + Y+H T EP LF R +SGC+R+ + +L W L+KD W R Sbjct: 368 KFHFDNSFSVYLHGTSEPALFKRENRALSSGCIRIEKVNELAQWFKRNLVKDKGLWDRL- 426 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 L+ ++PVH VY +AW +R+DIY L+ + Sbjct: 427 ---APNVTDPQWFALSEKLPVHLVYWTAWLDDKGQDHYRNDIYHLEAEFTNAVT 477 >gi|319426480|gb|ADV54554.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella putrefaciens 200] Length = 484 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 107/354 (30%), Positives = 171/354 (48%), Gaps = 12/354 (3%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 K I+ + S+ W L + L +G + V + +RL + GD+ + Sbjct: 129 YQAVLKKISQLIQLESQFSWETLMLENKLTVGQTHPIVNTIAKRLWLLGDMPKEVDVEQV 188 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 + + +K FQ+RHGL G++ TL +N R L N +R + +K+ Sbjct: 189 YTDELMLGIKRFQLRHGLQTDGVIGKQTLYWLNQSPRQRAVLLARNELRQRIF-SRKLTP 247 Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 RY+L+N+PA ++ VE + L S VIVG+ RQTPIL S+I+ I+ NP W +P SI+++ Sbjct: 248 RYLLINVPAFEMKLVEQEQTVLTSKVIVGKSSRQTPILDSQISSIVLNPSWRVPSSILRR 307 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAST 311 D++ +R+D YL+D + D G+ +F +W F + Q PG NA+ Sbjct: 308 DILPHIRKDGYYLQDREFDVYDYSGQLIFHTPEEWQELASSRFPYQLVQRPGPKNALGKY 367 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTPTWSRYH 367 K F + + Y+H T EP LF R +SGC+R+ + +L W L+KD W R Sbjct: 368 KFHFDNSFSVYLHGTSEPALFKRENRALSSGCIRIEKVNELAQWFKRNLVKDKGLWDRL- 426 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 L+ ++PVH VY +AW +R+DIY L+ + Sbjct: 427 ---APNVTDPQWFALSEKLPVHLVYWTAWLDDKGQDHYRNDIYHLEAEFTNAVT 477 >gi|256422945|ref|YP_003123598.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] gi|256037853|gb|ACU61397.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] Length = 534 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 96/371 (25%), Positives = 174/371 (46%), Gaps = 22/371 (5%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI---RPLHLGNSSVS 110 L + + + ++ A K++ Y DI + W + I + G+S+ Sbjct: 177 EVLKKASAVLADKETNMRGQSYAALHKSLQRYVDIAEKNSWDTIRIEKKKRYKKGDSTAV 236 Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 + +++RL +G+ K S F+ +E+AV F+ HG P G++ + L MN+P Sbjct: 237 IAWVKKRLQATGEYS-DKDTSTVFNDALETAVTAFEATHGHTPKGVITDTLLREMNMPAI 295 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 ++++ +NL R+ R +LVNIP L K V+VG+ + T + Sbjct: 296 KLVQRILINLERM-HWAPANPEGRLILVNIPEFGLHVWNGSKKEFDMPVVVGKEGKSTTM 354 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI-DEKGKEVFVEEVDWN 289 ++++I+F+PYW +P SI++++++ L ++ Y+ N+ + + G + Sbjct: 355 FSGKLDQIVFSPYWNLPNSIVKEEILPALARNKNYISSKNMEITGERNGLPI-------- 406 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 RQ PGK N + K F + N Y HDT + LF+ R + GC+R+ + Sbjct: 407 --------VRQKPGKDNPLGQVKFLFPNSFNIYFHDTNQKYLFDRDQRAFSHGCIRLGDP 458 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 + + +LL D WS I+ + + K V++ VPV Y +AW + +QFR+DI Sbjct: 459 VKMANYLLADNQNWSAERIDSAMNSGKEKYVRVKDPVPVLITYYTAWVDEAGKLQFREDI 518 Query: 410 YGLDNVHVGII 420 Y D G + Sbjct: 519 YDHDTYMAGKL 529 >gi|241762099|ref|ZP_04760182.1| Peptidoglycan-binding domain 1 protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373349|gb|EER62949.1| Peptidoglycan-binding domain 1 protein [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 502 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 111/409 (27%), Positives = 188/409 (45%), Gaps = 21/409 (5%) Query: 15 FVYLILPMGLSLVEKPIHASVLDE--IINESYHSIVNDRFDNFLARVDMGIDSDIPIISK 72 + L ++ + AS D+ + + D F N + +G + Sbjct: 98 LISASLDYARAIHSGRLSASDFDKNWGMKPDPYDPWPD-FKNAVNNNTLGDWAANLPPPY 156 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 A + + +Y+ I +GGWP +P L +G+ + V+ LR R+ I D + S Sbjct: 157 SGYAGLKNGLIYYRAIAEKGGWPVVPTGADLTVGSDNPRVKTLRRRIAIE-DKELPDNGS 215 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 FDA +++AVK Q R+GL+P+G+V TL+A+N PV RI Q+ N+ R + L + + Sbjct: 216 SHFDAALKAAVKRAQQRYGLNPTGVVSGQTLQALNQPVKSRIHQIMANMERWR-WLPRNL 274 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 + VN+ AA L E + + + GR +TP+L S I ++ NP W +P SI Sbjct: 275 PENRIQVNVAAAVLTLFEKNQPVMSMKSVTGRPGNETPMLRSTIYSLVINPPWNVPDSIA 334 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 +K++ + P YL+ +I E G+ +Q PG N++ Sbjct: 335 KKELWPKEKAHPGYLQAAGFKIIGESGQGQ---------------RLQQKPGPRNSLGQL 379 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K +F + + Y+HDTP F+ R E+ GC+R+ + + L LL P W+ + Sbjct: 380 KFDFPNSYSVYLHDTPGRGAFSRYGRLESHGCIRLEHPVALGERLLAADPAWTGDRLRSE 439 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + +T V+L V V Y +A+ ++ + FR D Y D + I Sbjct: 440 IDKNETERVRLKQPVAVFLFYWTAFGNGENALSFRSDPYKWDELLAQKI 488 >gi|258546017|ref|ZP_05706251.1| peptidoglycan binding protein [Cardiobacterium hominis ATCC 15826] gi|258518746|gb|EEV87605.1| peptidoglycan binding protein [Cardiobacterium hominis ATCC 15826] Length = 599 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 102/329 (31%), Positives = 160/329 (48%), Gaps = 13/329 (3%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 LP L G + +V LRE+L + G S FD + AV +Q HGL Sbjct: 272 QPLPKVTLKQGMNHEAVAILREKLGA----PATDGDSTYFDGALAEAVTAYQQSHGLKAD 327 Query: 155 GMVDSSTLEAMNVPVD-----LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 G+V T +N + +L +N+ R++ + Q MG YVLVNIP+ ++ Sbjct: 328 GIVSGKTRNLLNGNKASSGGNASVDRLMINMERLR-WMPQDMGESYVLVNIPSYYVKMYR 386 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 + S +VG+ DRQTP ++ I+ +P W +P +I++KD + LR +P + Sbjct: 387 GSEEIYASKAVVGQRDRQTPAFTDKLRHIVMSPTWTVPPTIMKKDKINKLRSNPGAFDGS 446 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 ++ G+ V VDW++P + RQ PG NA+ K F +++ Y+HDTP Sbjct: 447 FEAVV--GGRVVRPSAVDWSAPGATGYRLRQKPGARNALGRVKFLFPNKHAIYLHDTPSK 504 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF R +SGCVR++ + LL++T WS I++ + K V + P++ Sbjct: 505 SLFGRNDRALSSGCVRLQKPEEFANILLQNT-NWSAERIKKAMNQEKEQWVNTPEQTPIY 563 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 VY + WS D IQ +DIYG D + Sbjct: 564 LVYWTTWSDPDGKIQTANDIYGKDGALLQ 592 >gi|332187614|ref|ZP_08389350.1| putative peptidoglycan binding domain protein [Sphingomonas sp. S17] gi|332012362|gb|EGI54431.1| putative peptidoglycan binding domain protein [Sphingomonas sp. S17] Length = 510 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 115/406 (28%), Positives = 175/406 (43%), Gaps = 27/406 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDM----GIDSDIPIIS 71 I + L +H LD I +D D I I + Sbjct: 107 PAAIARIALDY-AHAVHVGRLDTADFSKDWGIRPQSYDPLPGFADAVRQDRIADWIAALP 165 Query: 72 KET--IAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSK 128 +A Y+ + GGW LP + G+S V +LR+RL + Sbjct: 166 PPYAGYDTLVTGLARYRAMAEAGGWTALPANASIPYGSSGPLVAQLRKRLAMED--PAVS 223 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 FD + +AV+ Q R+GL+P G V S T+ A+NVPV RIRQ+ N+ R + L Sbjct: 224 QTGATFDEPLLAAVRRAQRRYGLNPVGTVGSQTIAALNVPVSQRIRQIMANMERWR-WLP 282 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 Q++ + V VNI AA L E L + GR +TP+L S I+ ++ NP W +P Sbjct: 283 QQLEAKRVQVNIAAAVLTVFEGDNPVLSMKAVTGRPGNETPMLVSSIHSVVLNPPWNVPS 342 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SI K++ R +P YLK N +ID + Q + +A+ Sbjct: 343 SIANKELWPKERANPGYLKRNGFRVIDNGDGSKRL----------------QQSSEKSAL 386 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K +F + Y+HDTP F+ R + GCVR+ +L +LK TP W + Sbjct: 387 GRFKFDFPNDFAVYLHDTPAQSGFSKFDRLASHGCVRLEKPAELAGLVLKTTPEWQPAAV 446 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + + KT + V V+ +Y +A++ D + FR+D YG D Sbjct: 447 DATLASGKTVRASMDEPVAVYLLYWTAFANSDGQVSFREDPYGWDA 492 >gi|217973562|ref|YP_002358313.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS223] gi|217498697|gb|ACK46890.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS223] Length = 525 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 106/361 (29%), Positives = 173/361 (47%), Gaps = 12/361 (3%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPS 127 I + + K +A + + W L + L +G S + + +RL GDL Sbjct: 164 IPTDLQYQRVLKQVAHLVQLDATDPWETLVLDEKLTVGMSHPLLDTIAKRLWRLGDLAIE 223 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 + + + VK FQ +HGL G++ TL +N L N +R + Sbjct: 224 PMTNFVYSEELVVGVKRFQQKHGLKQDGVIGKQTLYWLNQSPKASAVLLAKNTIRQRVF- 282 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 E+K+ Y+L+N+PA + V+NG L S VIVG+ RQTP+L S+I+ ++ NP W +P Sbjct: 283 ERKLEPSYLLINVPAFEMFLVDNGTTVLNSKVIVGKSSRQTPLLDSQISSVVLNPSWRVP 342 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKI 305 SI+++D++ +R++ YL + + D G+ V +W +F + Q PG Sbjct: 343 SSILRRDILPQIRRNGHYLNERQFDVYDYNGQLVQHMPEEWQDLASTSFPYQLVQRPGAK 402 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTP 361 NA+ K F + + Y+H T EP LFN R +SGC+R+ + +L W L+KD Sbjct: 403 NALGKYKFHFDNSFSVYLHGTSEPSLFNKDDRALSSGCIRIEKVTELAQWFKEHLVKDKR 462 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 W + + + L+ ++PVH VY +AW Q+R DIY L+ +P Sbjct: 463 LWDKLAPDVT----EPQWFSLSQKLPVHLVYWTAWLDDSGQEQYRSDIYHLEAELTNTVP 518 Query: 422 L 422 Sbjct: 519 A 519 >gi|330445733|ref|ZP_08309385.1| putative peptidoglycan binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489924|dbj|GAA03882.1| putative peptidoglycan binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 579 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 120/423 (28%), Positives = 193/423 (45%), Gaps = 40/423 (9%) Query: 6 KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDS 65 K N L+ I P+ D I E H+ R F++R+ D Sbjct: 169 KGNLWLFGETPPTIFPLPS------------DTFIEELLHNHEQQRLRYFISRLKPHDDE 216 Query: 66 DIPIISK-ETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGD 123 I +++ + + + + WP + + G ++ + L GD Sbjct: 217 YIELVAALDELNEIKDM-----------RWPVFLFKGIIRPGQYVNNMDGVVTVLETLGD 265 Query: 124 LDPSKGLSVA------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 + PS+ + V A+K FQ RHGL G++ T + + + + RIR L Sbjct: 266 MTPSEARKIRTQKRKRLSGSVVIAIKRFQERHGLKSDGVIGPQTQQWLALSLKQRIRLLA 325 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 +N R++ V+VNIP+ + NG+ L S VIVGR RQTP++ S I Sbjct: 326 LNAQRLRLW--SVTPKTGVVVNIPSYYMNLWLNGEKVLGSKVIVGRPSRQTPMMGSDIQS 383 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--KEVFVEEVDWNSPEPPN 295 ++FNPYW +P SI++KD+M +R++ YL NN +I G +++ + + ++ P Sbjct: 384 VVFNPYWNVPNSIMKKDIMPKVRRNRSYLSRNNYEVIKGWGSAQKISINSIPYHLLSPNR 443 Query: 296 FIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 F + RQ PGK NA+ K F + Y+HDT LFN R +SGC+RV L Sbjct: 444 FPYRLRQKPGKRNALGLFKFNFPNSQAIYLHDTSSRSLFNKHERALSSGCIRVEQAKSLA 503 Query: 354 VWLLKDTPTWSRYHIEEVVKTRKTTPVKL--ATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 LL+ + + S + ++RKT + L VPV +Y +AW + ++ +R DIY Sbjct: 504 KVLLEYSGS-SEQRFNNLSRSRKTRTIVLGDGKSVPVDLIYQTAWVDELGLVNYRSDIYK 562 Query: 412 LDN 414 D Sbjct: 563 YDR 565 >gi|283856545|ref|YP_163499.2| ErfK/YbiS/YcfS/YnhG family protein [Zymomonas mobilis subsp. mobilis ZM4] gi|283775552|gb|AAV90388.2| ErfK/YbiS/YcfS/YnhG family protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 483 Score = 381 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 111/409 (27%), Positives = 188/409 (45%), Gaps = 21/409 (5%) Query: 15 FVYLILPMGLSLVEKPIHASVLDE--IINESYHSIVNDRFDNFLARVDMGIDSDIPIISK 72 + L ++ + AS D+ + + D F N + +G + Sbjct: 79 LISASLDYARAIHSGRLSASDFDKNWGMKPDPYDPWPD-FKNAVNNNTLGDWAANLPPPY 137 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 A + + +Y+ I +GGWP +P L +G+ + V+ LR R+ I D + S Sbjct: 138 SGYAGLKNGLIYYRAIAEKGGWPVVPTGADLTVGSDNPRVKTLRRRIAIE-DKELPDNGS 196 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 FDA +++AVK Q R+GL+P+G+V TL+A+N PV RI Q+ N+ R + L + + Sbjct: 197 SHFDAALKAAVKRAQQRYGLNPTGVVSGQTLQALNQPVKSRIHQIMANMERWR-WLPRNL 255 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 + VN+ AA L E + + + GR +TP+L S I ++ NP W +P SI Sbjct: 256 PENRIQVNVAAAVLTLFEKNQPVMSMKSVTGRPGNETPMLRSTIYSLVINPPWNVPDSIA 315 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 +K++ + P YL+ +I E G+ +Q PG N++ Sbjct: 316 KKELWPKEKAHPGYLQAAGFKIIGESGQGQ---------------RLQQKPGPRNSLGQL 360 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K +F + + Y+HDTP F+ R E+ GC+R+ + + L LL P W+ + Sbjct: 361 KFDFPNSYSVYLHDTPGRGAFSRYGRLESHGCIRLEHPVALGERLLAADPAWTGDRLRSE 420 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + +T V+L V V Y +A+ ++ + FR D Y D + I Sbjct: 421 IDKNETERVRLKQPVAVFLFYWTAFGNGENALSFRSDPYKWDELLAQKI 469 >gi|83858763|ref|ZP_00952285.1| hypothetical protein OA2633_04651 [Oceanicaulis alexandrii HTCC2633] gi|83853586|gb|EAP91438.1| hypothetical protein OA2633_04651 [Oceanicaulis alexandrii HTCC2633] Length = 595 Score = 381 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 114/409 (27%), Positives = 192/409 (46%), Gaps = 41/409 (10%) Query: 52 FDNFLARVDMGI-DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI--RPLHLGNSS 108 D L R G+ D + ++ KA Y + GG+ ++P L LG+SS Sbjct: 175 LDQMLPRAGAGVLDYEQLSVTHPEYEDLIKARRTYDGYIKSGGFTQVPEPEGLLELGDSS 234 Query: 109 VSVQRLRERLIISGD--------------------------LDPSKGLSVA--------F 134 V+ LR RL G D + +S A F Sbjct: 235 PVVETLRVRLREEGYRIERPRRPSLMAESQPPLTQVSFITAPDAAAPVSAADWRREMQSF 294 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 +E+A++ FQ +GL+ G++ +T+ A+NV + ++ ++ NL R ++ +G R Sbjct: 295 SPELEAALRDFQAHNGLEVDGVLGPATIAALNVSAEDKLARIDANLERWRRASP-DLGER 353 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 YV VNIPA + AV +G L IVG RQTP++ +I I+ NP+W +P SI+ +D Sbjct: 354 YVEVNIPAYTARAVRDGDTELEMRSIVGLPARQTPLMSEQIEHIVANPHWYVPESILVRD 413 Query: 255 MMALLRQDPQYLKDNNIHMIDEK-GKEVFVEEVDWNSPE-PPNFIFRQDPGKINAMASTK 312 ++ +R+D YL+D ++D G+ + E +DW++ QDPG NA+ K Sbjct: 414 KLSHIREDEAYLEDRGYKVVDRDTGEPLSAETIDWSADGIADQVRLIQDPGDNNALGELK 473 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS-RYHIEEV 371 I F ++++ Y+H TP LF R +SGC+R+ + + W+++ + I + Sbjct: 474 IMFPNQHSVYLHGTPSRHLFERDQRAFSSGCIRLEDPQAMAAWVVEAVTDQNAEAMIAQA 533 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 V + + + L +PVH VY + D + F D+Y D + +I Sbjct: 534 VASGENQHIALDAPLPVHVVYRTVEVEDDGDVIFHHDVYDRDPALIALI 582 >gi|167624266|ref|YP_001674560.1| peptidoglycan-binding domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167354288|gb|ABZ76901.1| Peptidoglycan-binding domain 1 protein [Shewanella halifaxensis HAW-EB4] Length = 464 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 105/372 (28%), Positives = 176/372 (47%), Gaps = 11/372 (2%) Query: 44 YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL- 102 +S N D F+ + + + + Q + I + +G W + I L Sbjct: 84 RNSSTNHLGDPFIRAMALEPELNG-------YLQIQNRIRHLHWLAQQGWWQPIIIDELI 136 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 S+ + +RL + GD + S S D + SA+K FQ RHGL P ++ T+ Sbjct: 137 RPSKKHPSIPTIAKRLWLLGDAERSATTSTLLDEKLSSALKRFQRRHGLQPDAIIGPETM 196 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 + +NV R R L N + + + Q+ G +++++NIPA + G+V L S VIVG Sbjct: 197 KWLNVQPIERARMLANNFVLKAEFMAQR-GDQFLVINIPAFEMALFSKGRVELESRVIVG 255 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + R TP+L I+ ++ NP W +P+ I+ D++ +R+D Y+ + N + D V Sbjct: 256 KPYRPTPLLSGAISNVVINPSWRVPKKILYNDLLPHVRKDGNYIAEGNFDVFDRSNNLVV 315 Query: 283 VEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W+ F +R Q PG N + K F + + ++HDT P LF R + Sbjct: 316 RTAQQWSDLARGPFPYRFVQRPGYNNTLGRYKFYFPNDFSIFLHDTSNPKLFERSNRALS 375 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKD 400 SGC+RV N+ L W+ + + ++ + +T L + + VH VY +AW + Sbjct: 376 SGCIRVENVEGLANWMAANLVKDKQTWVDRHAERTRTQWFALNSTLNVHLVYWTAWIDEH 435 Query: 401 SIIQFRDDIYGL 412 + QFR+DIY L Sbjct: 436 NQAQFRNDIYQL 447 >gi|229591001|ref|YP_002873120.1| hypothetical protein PFLU3558 [Pseudomonas fluorescens SBW25] gi|229362867|emb|CAY49777.1| putative exported protein [Pseudomonas fluorescens SBW25] Length = 532 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 111/368 (30%), Positives = 175/368 (47%), Gaps = 11/368 (2%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQ 112 L + D P S + A A + W + PL G V Sbjct: 171 AGLQDMAQAFDQARP--SADLYRSLRNAYATVRQ-QPLPHWDPVGSGPLLRPGMEDPRVP 227 Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 L RLI G L + + + AVK FQ+ H L G++ + T+ +N+ +R Sbjct: 228 ELARRLISGGYL-ATASSGKQYHDELVKAVKAFQLSHSLQADGVIGAGTVAELNISPAIR 286 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 QL++NL R + L Q + VLVN+ AA L ++G ++ + VGR +RQTP+L Sbjct: 287 REQLRINLERFR-WLAQDLEPEGVLVNVAAAQLSVYQSGIPVWQTRLQVGRAERQTPLLK 345 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 SRI R+ NP W IP +I+++D + +R +P+YL+ N+ ++D +G + E++DW Sbjct: 346 SRITRLTLNPTWTIPPTIMREDKLPAIRLNPEYLRQQNLQVLDAEGHPLAPEQIDWA--R 403 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 P N + RQ+ G N + + F + + Y+HDTP LF R +SGCVRV + L Sbjct: 404 PGNILLRQEAGPRNPLGKIVMRFPNPYSVYLHDTPSQPLFTKGPRAFSSGCVRVEQPLLL 463 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 L+ R +E++ T T +LAT VPV Y + + + + DIY Sbjct: 464 RDLLVSPA---ERARTDELLATGVTHEFRLATPVPVLLGYWTVEVDRQGGLVYAPDIYAR 520 Query: 413 DNVHVGII 420 D V + + Sbjct: 521 DLVLMKAM 528 >gi|16125758|ref|NP_420322.1| peptidoglycan binding domain-containing protein [Caulobacter crescentus CB15] gi|221234516|ref|YP_002516952.1| cell wall degradation protein [Caulobacter crescentus NA1000] gi|13422888|gb|AAK23490.1| peptidoglycan binding domain protein [Caulobacter crescentus CB15] gi|220963688|gb|ACL95044.1| cell wall degradation protein [Caulobacter crescentus NA1000] Length = 502 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 109/364 (29%), Positives = 177/364 (48%), Gaps = 20/364 (5%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRE 116 R+ +++ P + +A Y+DI ++GGW + P L G + V L Sbjct: 155 RLAEWLETLPPPYTG--YQALRTGLATYRDIAAKGGWLPIAAGPELKEGVTGARVVALEA 212 Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 RL D + + FDA + AV+ Q R GL+P+G+VD +TL A+N+PV+ RI Q+ Sbjct: 213 RLAAE-DPTVAVDAAPVFDAALTQAVQRAQKRFGLNPNGIVDRATLAALNIPVERRIDQI 271 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 N+ R + L Q + + VN+ AA L + L + GR +TP+L S I+ Sbjct: 272 VANMERWR-WLPQTLPAERIQVNVAAAILSVFHHDTPTLTMRAVTGRPGDETPMLSSMIH 330 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF 296 I+ NP W +P+SI K++ R P YL N+ +I +G Sbjct: 331 SIVLNPPWNVPQSIASKEIWPKERASPGYLARNDFIVIPIEGGGT--------------- 375 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 +Q G + A+ K +F + Y+HDTP F++ R + GCVR++ I+L + Sbjct: 376 RLQQKAGPLAALGKVKFDFNNPYGVYLHDTPSRSRFDSFSRLASHGCVRLQKPIELVNEV 435 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 ++D PTW+ + E + + +T KL ++ V+ +Y +A+ D + FR D YG D Sbjct: 436 MRDDPTWTPEKVNETLASGETVRAKLPQQIAVYLLYWTAYVTPDGQVNFRQDPYGWDRDL 495 Query: 417 VGII 420 V I Sbjct: 496 VQRI 499 >gi|330722118|gb|EGH00028.1| L2CD-transpeptidase YcbB [gamma proteobacterium IMCC2047] Length = 439 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 117/423 (27%), Positives = 202/423 (47%), Gaps = 22/423 (5%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP 68 K Y FV L+L LV KP+ V+ EI +E S V + L D+ P Sbjct: 2 KCRYAVFVALLL-----LVFKPVW--VMAEITDELLLSRVTA--PDLLPFQDIQPQLLQP 52 Query: 69 --IISKETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLD 125 SK++ A+ Y++I + G W PL G+ V +L+ L GDL Sbjct: 53 YQAASKQSFESLADAVLTYENIQNNGRWRTFSAGPLLRQGDRHPQVSQLKAHLQWLGDLP 112 Query: 126 PSKGLSV---AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 P LS+ FD + A+ FQ RH + G++ T +NVP RI QL +N+ R Sbjct: 113 PQDILSLGSRLFDRALHQALLRFQARHSVKADGVLGPKTRALLNVPPWQRIDQLVLNMYR 172 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ + Y+ +N+P +L + G+V L +VG+ RQTP + + +++ NP Sbjct: 173 QQQ--NEINDDVYLHINLPEYNLRFYQFGEVLLEMRAVVGKRTRQTPEFSAAVTKLIINP 230 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK---GKEVFVEEVDWNSP--EPPNFI 297 W +P+SI +D++ L DP++L+ N+ ++ EV +VD++ + Sbjct: 231 DWNVPKSIAYRDILPKLHNDPEFLRKRNLRVVSGWQLPRVEVPEHQVDFDRMYQGAEYYR 290 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 F + PG+ N + K + S N+ Y+HDT + LF+ R +SGC+R+ + L L+ Sbjct: 291 FWEPPGETNTLGRMKFQLDSDNSIYLHDTQQKNLFDAESRAFSSGCIRLESPRALADTLM 350 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 + W+ ++ + +++ + VH Y +AW K ++ F +D+Y D+V Sbjct: 351 RVANQWTPEVLDPLFDGPDMIKLRVGKNILVHVTYWTAWLDKRGVLHFANDMYERDSVDF 410 Query: 418 GII 420 ++ Sbjct: 411 AVM 413 >gi|94501826|ref|ZP_01308338.1| hypothetical protein RED65_14387 [Oceanobacter sp. RED65] gi|94426047|gb|EAT11043.1| hypothetical protein RED65_14387 [Oceanobacter sp. RED65] Length = 628 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 109/395 (27%), Positives = 179/395 (45%), Gaps = 41/395 (10%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPS 127 + S + + + YQDI G W L I PL G+ + RL+ L GD S Sbjct: 239 VPSHPGYERLGQELERYQDIAESGLWYPLEIENPLKAGDHHAQIPRLKWMLNAYGDYQKS 298 Query: 128 K-------------------------GLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSS 160 + D A+K +Q R+GL P+G +D Sbjct: 299 AMDWLVSQTPNSELDPLALERQYRKQPEHQVYRIDENTVRALKHYQKRNGLLPTGRLDQQ 358 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 TL +N P +++ +N+ R + L +++G Y+LVN+ L GK L VI Sbjct: 359 TLAQLNEPPYFIAQRIALNMKRWR-YLPKELGEDYILVNMADFRLNYFAKGKRQLNMKVI 417 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-- 278 +G+ +TP+L I+ ++ P W +P I +D++ ++DP YL+ +N + + Sbjct: 418 IGKEHLRTPVLAETISSVILAPEWNVPHRIAIRDIIPQAKRDPDYLRKHNFKVYEGWSMP 477 Query: 279 -KEVFVEEVDWNSPEPP--NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 KEV +E +D+N + + Q PG N++ + K F + + Y+HDT LF Sbjct: 478 PKEVPLENLDFNGFQSRTNTYRLVQAPGDDNSLGNVKFVFPNDKSIYLHDTNHKELFARD 537 Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 +R +SGC+RV + L LL W I V++ R T PV+L VPV+ +Y + Sbjct: 538 MRALSSGCIRVEQPMALAKALLGRQ-NWDEQLISNVIERRYTRPVRLKDPVPVYLMYWTT 596 Query: 396 WSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPIDS 430 W ++ +Q R D+Y D + + H +DS Sbjct: 597 WVNEEGTLQVRRDVYNRDQI------NNQSHKLDS 625 >gi|77459598|ref|YP_349105.1| hypothetical protein Pfl01_3376 [Pseudomonas fluorescens Pf0-1] gi|77383601|gb|ABA75114.1| putative exported protein [Pseudomonas fluorescens Pf0-1] Length = 537 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 110/400 (27%), Positives = 182/400 (45%), Gaps = 20/400 (5%) Query: 37 DEIINESYHSIV------NDRFDNFLARVDMGIDSDIPI---ISKETIAQTEKAIAFY-- 85 ++ + + DR LA G+ ++P +++ +AQ + Y Sbjct: 144 GRLLQSHFEPLWHSDETPRDRQAELLAIAVPGVH-NVPAAFDLARPQLAQYQNLRHLYAA 202 Query: 86 QDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSV-AFDAYVESAVK 143 Q + + W + PL V L RL G L+ G A+ + AVK Sbjct: 203 QRLKALPQWTSVGNGPLLRPDMEDKRVPELARRLYSEGYLNSVAGTPDNAYHGVLVEAVK 262 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 FQ H L G+V T+ +N+ R QL+VNL R + + Q M +LVN+ AA Sbjct: 263 SFQANHSLQADGVVGPGTIAELNISPLTRREQLRVNLERFR-WMAQDMEPDGLLVNVAAA 321 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 L + G ++ VGR +RQTP+L SR+ R+ NP W +P +I ++D + +R+D Sbjct: 322 ELTLYQGGLPVWQTRTQVGRAERQTPLLKSRVTRLTLNPTWTVPPTIWKEDKLPEIRKDQ 381 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYM 323 +L N+ ++D G+ + ++DW+ P N + RQD G N + I F + + Y+ Sbjct: 382 TFLSRQNLQVLDANGQPLAAADIDWD--NPGNILLRQDAGPRNPLGQMVIRFPNPFSVYL 439 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 HDTP LF+ R +SGCVRV + + L LL + + ++ T T +L+ Sbjct: 440 HDTPSKALFDKGPRAFSSGCVRVEHPMKLRDLLLSPA---EKARTDTLLATGVTHEFRLS 496 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 VP+ Y +A + + DIY D+ + + Sbjct: 497 NPVPILMTYWTAQVDGQGRVLYAPDIYSRDSALLAGLDRA 536 >gi|238898896|ref|YP_002924578.1| hypothetical protein HDEF_1835 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466656|gb|ACQ68430.1| conserved hypothetical protein, YkuD and peptidoglycan binding domains [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 530 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 104/360 (28%), Positives = 173/360 (48%), Gaps = 11/360 (3%) Query: 66 DIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISG-- 122 + ++ + + + + WP+L R L G SS + +++ L G Sbjct: 174 YVNSLAPQHPQYRKMQTELLKLLSDNSPWPKLTERVYLREGYSSKDISNVKKILYRLGIG 233 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 ++ + S + + A+K FQ GL G++ T +NV + R L +N+ R Sbjct: 234 NMSLTDVDSQVYSHDLVMAIKQFQKNRGLPADGIIGIRTRNWLNVSPKILARLLALNMQR 293 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ +LVNIP SL E GK+ L S VIVGR DR+TP++ S IN+I+ NP Sbjct: 294 LRFTPADI--QTGILVNIPDYSLNYYEEGKIRLFSKVIVGRPDRKTPVMQSAINQIVINP 351 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF- 298 W +P S+ ++D++ + ++ YL+++N ++ + + E +DW + NF + Sbjct: 352 DWNVPHSLAREDILPQVIKNIDYLQEHNYRILSSWSQNAEVIDPESIDWENISIENFPYY 411 Query: 299 -RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 RQ G N + K +R + ++HDTP +F R +SGCVRV+ +L LL Sbjct: 412 LRQTLGPNNPLGHYKFNMPNRYSIFLHDTPNKAMFQRYRRAGSSGCVRVQKASELARLLL 471 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 K T + I +K K+T +PV Y++AW +D QFR DIY D + Sbjct: 472 KKT-GLTDADILNFLKENKSTYRNTRKRIPVWLYYLTAWVSEDGATQFRTDIYHYDQSVL 530 >gi|167645745|ref|YP_001683408.1| peptidoglycan-binding domain-containing protein [Caulobacter sp. K31] gi|167348175|gb|ABZ70910.1| Peptidoglycan-binding domain 1 protein [Caulobacter sp. K31] Length = 500 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 111/365 (30%), Positives = 164/365 (44%), Gaps = 21/365 (5%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNS-SVSVQRLR 115 R+ +DS P + K + Y+DI +RGGW L PL LG + + L+ Sbjct: 147 RLGPWLDSLPPPYTG--YQTLRKGLTTYRDIAARGGWKPLAGGAPLKLGATGDPRIAALK 204 Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 RL D + FD ++ A+ Q R GL+P G + +TL A+NVPV+ RI Q Sbjct: 205 VRLAAE-DATVVVDKAQVFDEVLQQALMRAQKRFGLNPDGGLGPATLAALNVPVERRIDQ 263 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 + N+ R + L +++ + VNI AA + + L + GR +TP+L S I Sbjct: 264 ILANMERWR-WLPRELPADRIQVNIAAAVMSVFHDDAPNLTMRAVTGRPGDETPMLQSTI 322 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 + I+ NP W +P SI K++ R P YL N+ +I Sbjct: 323 HSIVLNPPWNVPSSIATKELWPKERAHPGYLARNDFIVIPTG---------------EGT 367 Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 +Q G A+ K +F + Y+HDTP F + R + GCVR+ I L Sbjct: 368 SRLQQKAGPKAALGLVKFDFDNPYGVYLHDTPSRSKFESYSRLASHGCVRLEKPIPLAKQ 427 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 LL +P W +E + KT LA + V +Y +A+ D + FRDD YG D V Sbjct: 428 LLASSPDWQPDVVEATIAAGKTVRAPLAQPIAVFLLYWTAYMTPDGQMNFRDDPYGWDKV 487 Query: 416 HVGII 420 V I Sbjct: 488 LVQRI 492 >gi|90579750|ref|ZP_01235559.1| hypothetical amidase [Vibrio angustum S14] gi|90439324|gb|EAS64506.1| hypothetical amidase [Vibrio angustum S14] Length = 587 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 115/418 (27%), Positives = 196/418 (46%), Gaps = 21/418 (5%) Query: 13 CFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK 72 F Y+ + + KPI+ S ++ D + LA+++ S I Sbjct: 168 AFQNYIATHRDVLFLSKPINMSKSMT-----KYADGVDVYPMTLAKLEQLRPSYI----- 217 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL-- 130 T AIA YQD+ + + G + + L + L GD+D + Sbjct: 218 -AFKPTMDAIAKYQDLPAHTLTSSNFKQVYRKGATLPNGHELIKVLYTLGDMDQADYDRL 276 Query: 131 ----SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 ++ V ++K FQ RHGL G++ ++T++ + +P D R+L +N +R+ L Sbjct: 277 SVVHNITNTGAVFESLKAFQKRHGLASDGIIGAATVQQLVMPYDDIARRLALNTLRVATL 336 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + G ++ VNIP LE + G V S VIVGR R T + S I ++ NPYW + Sbjct: 337 NKHAEGRPHIWVNIPNYKLEVFDKGNVVFESKVIVGRDSRPTNLFSSAITTMVVNPYWNV 396 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFI--FRQDP 302 P +I Q D++ ++ + YLK +N+ +++ + +DW + P F F+Q P Sbjct: 397 PITIKQHDVIPKVKHNIDYLKQHNMQILNSWRDRTVISPSSIDWATVNPKTFPHEFQQGP 456 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ K + ++HDTP LF+ R +SGCVRV DL ++++ Sbjct: 457 GPRNSLGRVKFLMPNDYAIFLHDTPSRGLFSKTKRDLSSGCVRVERAYDLANYVIEYQNR 516 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + ++++ +K V L+ + V FVY++AW D +Q R+DIYG D+ I Sbjct: 517 GNIPEFKQMLDAQKQKTVSLSKRIDVDFVYLTAWVDNDGKVQMREDIYGYDSPSANKI 574 >gi|70729780|ref|YP_259519.1| hypothetical protein PFL_2412 [Pseudomonas fluorescens Pf-5] gi|68344079|gb|AAY91685.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5] Length = 523 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 111/369 (30%), Positives = 174/369 (47%), Gaps = 11/369 (2%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQ 112 +A + + P ++ +A A + W + PL V Sbjct: 160 PGIAHIATAFEQARPSLA--QYRNLRQAYAHERQ-QPLPQWQAVAGGPLLRPDMQDKRVP 216 Query: 113 RLRERLIISGDL-DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 L RL G L P A+ + SAVK FQ+ H L G+V + TL+ MN+ Sbjct: 217 ELALRLYHGGYLQSPVVNPDNAYSGELVSAVKNFQLGHSLQADGVVGAGTLKEMNISPAE 276 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 R QL++NL R++ L Q VLVN+ AA L ++ V ++ VGR +RQTP+L Sbjct: 277 RREQLRINLERLR-WLAQDYEPNLVLVNVAAAQLTFYQHDAVVWQTRTQVGRAERQTPLL 335 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP 291 S++ R+ NP W +P +I+++D + +R+D +L N+ ++D G+ + E++DW+ Sbjct: 336 KSQVTRLTLNPTWTVPPTILKEDKLPEIRRDQGFLNRQNLQVLDANGQPLAAEDIDWD-- 393 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 P N + RQ G N + I F + + Y+HDTP LF+ R +SGCVRV + Sbjct: 394 RPGNILLRQGAGPRNPLGRIAIRFPNPFSVYLHDTPSQALFSKGPRAFSSGCVRVEQALQ 453 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L WLL R E++ T T +LA VP+ Y + + + + DIYG Sbjct: 454 LRDWLLSPA---ERLRTNELLATGLTHEFRLAKPVPILLSYWTVQADSHGQLLYAPDIYG 510 Query: 412 LDNVHVGII 420 D V + Sbjct: 511 HDQVLSTAL 519 >gi|330445897|ref|ZP_08309549.1| putative peptidoglycan binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490088|dbj|GAA04046.1| putative peptidoglycan binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 586 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 109/418 (26%), Positives = 193/418 (46%), Gaps = 21/418 (5%) Query: 13 CFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK 72 F Y+ + + KP+ S + ++ D + LA+++ I Sbjct: 167 AFQNYIATHRNVLFLSKPLRMSKVMTD-----YASGVDAYPMTLAKLEALRPGYI----- 216 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 T A+A YQ++ + R G++ L + L GD+D + + Sbjct: 217 -AFKPTMDAVAKYQNLPAHTLKASDFTRVYRKGDTLPHGHELVKVLYTLGDMDQAHYDHL 275 Query: 133 AF------DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + V ++K FQ RHGL G+V +T++ + +P + R+L +N +R+ L Sbjct: 276 SHQAKITNTGAVFESLKTFQKRHGLSSDGIVGPATVQQLVMPYNEIARRLALNTLRVATL 335 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + ++ VNIP LE + G V S VIVGR R T + S I ++ NPYW + Sbjct: 336 NKHSEDRPHIWVNIPNYKLEVYDKGNVVFESKVIVGRDSRPTNLFSSAITTMVVNPYWNV 395 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFI--FRQDP 302 P +I Q D++ ++++ YLK +N+ +++ + ++W++ P F F+Q P Sbjct: 396 PITIKQHDVIPKVKRNIGYLKQHNMQILNSWRDRTVINPTSINWSTVNPKTFPHEFQQGP 455 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ K + ++HDTP LF+ R +SGCVRV DL +++ Sbjct: 456 GPHNSLGRVKFLMPNDYAIFLHDTPARGLFSKTKRDLSSGCVRVERAYDLANYVIDYQNR 515 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + +++ K V L+ + V FVY++AW ++ +Q R+DIYG D+ I Sbjct: 516 GNIPAFTKMLNAEKQKTVSLSKRIDVDFVYLTAWVDQNGKVQMREDIYGYDSPSANKI 573 >gi|320109078|ref|YP_004184668.1| ErfK/YbiS/YcfS/YnhG family protein [Terriglobus saanensis SP1PR4] gi|319927599|gb|ADV84674.1| ErfK/YbiS/YcfS/YnhG family protein [Terriglobus saanensis SP1PR4] Length = 569 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 172/382 (45%), Gaps = 13/382 (3%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI---RPLHLGNSSVSV 111 + D+ + T+ AI Y +L + +P+ + + G Sbjct: 180 LIDSTDVDDALNDAEPQSPEYRATKAAIVHYVGLLPQDHTSPVPMVTGKSIEPGKPWAGS 239 Query: 112 QRLRERLIISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 Q L RL + GDLD P + +D + A+K FQ RHG++ G + T+ A+N P+ Sbjct: 240 QALSGRLALFGDLDNVPDTVSASTYDPQLTDALKKFQHRHGIEEDGKIGKDTVNALNTPL 299 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGR--VDR 226 +RI QL L R + L + ++VN+P +L A +G V+VG+ + Sbjct: 300 GVRINQLTDTLERWR-WLSDEYQNAAIMVNLPEYTLRAFSDGHHEEFSMRVVVGQSVKEH 358 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 +TP++ + ++F P+W +P SI++ ++ +R YL +N +D KG V Sbjct: 359 RTPVITDHMKYLVFRPFWNVPPSIMKAEIAPHMRASSGYLASHNFETVDNKGNPVSASA- 417 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 I R+ PG N++ K F + N Y+H TP LF+ R + GCVR+ Sbjct: 418 --EQVARAGVIVREKPGPKNSLGLVKFLFPNTFNVYLHSTPATELFSRSKRDFSHGCVRL 475 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRK-TTPVKLATEVPVHFVYISAWSPKDSIIQF 405 + L W+L+D W+ I E ++ + V L+ +P+ Y +A+ +D + F Sbjct: 476 QEPEKLAAWVLRDNSKWNDDSIHEAMENGQDNKTVLLSHPIPIVIFYATAYPGEDGDMHF 535 Query: 406 RDDIYGLDNVHVGIIPLPEDHP 427 DIYG D + +P Sbjct: 536 FTDIYGYDKELEDALHHGPPYP 557 >gi|119774749|ref|YP_927489.1| peptidoglycan binding domain-containing protein [Shewanella amazonensis SB2B] gi|119767249|gb|ABL99819.1| peptidoglycan-binding domain 1 [Shewanella amazonensis SB2B] Length = 472 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 111/377 (29%), Positives = 183/377 (48%), Gaps = 14/377 (3%) Query: 38 EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL 97 E + ++H ++ L ++ + T + + + P + Sbjct: 96 ETVESAHHQNATQDLNSRLIALEP----------NDRFLNTMNRLRHLLWLAEQPWQPIV 145 Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGM 156 L G+S V + +RL + GD++ G + +D V VK FQ RHGL + Sbjct: 146 LNGLLRPGDSHTEVVAIAKRLWLLGDMETEPGYALSRYDDEVAQGVKAFQHRHGLKQDAV 205 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 + TL +N+ D R +L + + ++ Q + YVLVNIPA LE V++G+ + Sbjct: 206 IGPKTLYWLNLAPDTRAARLARDYL-LQSRERQTLPSTYVLVNIPAFDLELVDDGEALMH 264 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 S VIVG+ R+TP + S I+ ++ NP W +PR +++ D++ +R+D YL + Sbjct: 265 SRVIVGKPSRKTPFIQSEISAVVVNPSWRVPRRLMRLDVLPKVRKDGSYLSRKGFIVWSR 324 Query: 277 KGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 +G+EV + + S F + Q PG NA+ K+ F + +N Y+HDTP+ LF+ Sbjct: 325 EGEEVKETDDFFQSAAAGKFPYLLEQRPGPDNALGRFKLHFANEDNVYLHDTPDKHLFDE 384 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 +R +SGCVRV I +L WL R + + + T L +PVHFVY + Sbjct: 385 PMRALSSGCVRVEKINELSAWLANGRLADPRRWQQTLQTPQTTRWFTLKERLPVHFVYWT 444 Query: 395 AWSPKDSIIQFRDDIYG 411 +W + QFR+DIYG Sbjct: 445 SWVDAEGKAQFREDIYG 461 >gi|117920334|ref|YP_869526.1| peptidoglycan binding domain-containing protein [Shewanella sp. ANA-3] gi|117612666|gb|ABK48120.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. ANA-3] Length = 558 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 125/480 (26%), Positives = 206/480 (42%), Gaps = 78/480 (16%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVND----------RFDNFLARVDMGIDS 65 + L + L+ V P+ ++ ++I + ++ N+ + DN+ +D + Sbjct: 80 LGQTLLLSLADVS-PVFSANYQQLIQWQHRALNNEEQLKLRQMQLQLDNYWQYLDAQAEC 138 Query: 66 DIPIISKETIAQTEK------AIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERL 118 P +S I + + + W L + L G S + + +RL Sbjct: 139 TAPCLSAALIPKDTYFRAVVLKLKQLMALAESSSWETLILEDKLSPGQESPLIAPIAQRL 198 Query: 119 IISGDLDP-------------------------------------------------SKG 129 + G L + Sbjct: 199 FLLGFLAEMPSTASESVADEAALPVSELGSEPTIEPDIISPDATTHAGTVARTEQASTDN 258 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 S+ +D + A+K FQ +HGL G++ TL +N R + L N +R ++L + Sbjct: 259 NSMPYDDELVRAIKNFQTQHGLQADGVIGKQTLYWLNQSPYARAKLLAKNTLR-QQLFTR 317 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 + Y+++NIPA L+ VE GKV L S VIVG+ R TP+L S I+ ++ NP W +PR+ Sbjct: 318 TLPASYLVINIPAFELQFVEAGKVILNSKVIVGKASRPTPLLSSHISSVVLNPQWRVPRT 377 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINA 307 I+++D+M +RQD YL+D + D G V +W +F +R Q PG NA Sbjct: 378 IVRRDIMPHIRQDGHYLQDRGFDVYDYDGARVEHSPQEWQELASSHFPYRLVQRPGAKNA 437 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTPTW 363 + K F + + Y+H T EP LF R +SGC+RV + +L W L+KDT W Sbjct: 438 LGRYKFHFDNSFSVYLHGTSEPSLFKKTDRALSSGCIRVEKVEELARWFQTHLVKDTRLW 497 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 + T ++ L+ +PV+ VY +AW IQ+R+DIY L+ +P Sbjct: 498 DKL----TPNTTQSQWFALSDTMPVYTVYWTAWLDDAGQIQYRNDIYHLEVEFTQAVPAA 553 >gi|90579549|ref|ZP_01235358.1| hypothetical protein VAS14_01266 [Vibrio angustum S14] gi|90439123|gb|EAS64305.1| hypothetical protein VAS14_01266 [Vibrio angustum S14] Length = 579 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 115/423 (27%), Positives = 193/423 (45%), Gaps = 40/423 (9%) Query: 6 KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDS 65 K N L+ ILP+ D + + S R F+AR+ Sbjct: 169 KGNLWLFGDIPPTILPLPS------------DGFLEKLLRSHEQQRLRYFIARLKPLDTE 216 Query: 66 DIPIISKETIAQTEKAIAFYQ-DILSRGGWPE-LPIRPLHLGNSSVSVQRLRERLIISGD 123 +++ A Y+ +++ WP L + G +++ + L GD Sbjct: 217 YTELVT-----------ALYKLNLIKDTRWPVFLFKGNIQPGQYVKNIEGVVTVLETLGD 265 Query: 124 LDPSKGLSVA------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 + + + V A+K FQ RHGL G++ T + + + + RIR L Sbjct: 266 MTALEAENARSQKIQNLSGSVLIAIKRFQERHGLKSDGVIGPQTQQWLALNIKERIRLLA 325 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 +N R++ ++VNIP+ + G+ L S VIVGR RQTP+++S I Sbjct: 326 LNAQRMRLW--SVKPDTGIVVNIPSYYMNLWLEGEKVLGSKVIVGRPSRQTPMIYSDIQS 383 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEEVDWNSPEPPN 295 ++FNPYW +P SI++KD+M +R++ YL ++N +I G+++ + + ++ P Sbjct: 384 VVFNPYWNVPNSIMKKDIMPKVRRNRNYLANHNYEVIKGWDNGQKIAINSIPYHLLSPNR 443 Query: 296 FIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 F + RQ PGK NA+ K F + Y+HDT LF R +SGC+RV L Sbjct: 444 FPYRLRQKPGKRNALGLYKFNFPNNQAIYLHDTASRSLFKKHERALSSGCIRVEQAKSLA 503 Query: 354 VWLLKDTPTWSRYHIEEVVKTRKTTPVKL--ATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 LL+ + + S + + ++RKT + L + VPV +Y +AW ++ +R DIY Sbjct: 504 KVLLEYSGS-SVQRFDNLSRSRKTRTIVLGDSKSVPVDLIYQTAWVDDLGLVHYRSDIYE 562 Query: 412 LDN 414 D Sbjct: 563 YDR 565 >gi|4378168|gb|AAD19413.1| unknown [Zymomonas mobilis subsp. mobilis ZM4] Length = 473 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 110/409 (26%), Positives = 188/409 (45%), Gaps = 21/409 (5%) Query: 15 FVYLILPMGLSLVEKPIHASVLDE--IINESYHSIVNDRFDNFLARVDMGIDSDIPIISK 72 + L ++ + AS D+ + + D F N + +G + Sbjct: 69 LISASLDYARAIHSGRLSASDFDKNWGMKPEPYDPWPD-FKNAVNNNTLGDWAANLPPPY 127 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 A + + +Y+ I +GGWP +P L +G+ + V+ LR R+ I D + S Sbjct: 128 SGYAGLKNGLIYYRAIAEKGGWPVVPTGADLTVGSDNPRVKTLRRRIAIE-DKELPDNGS 186 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 FDA +++AVK Q R+GL+P+G+V TL+A+N PV RI Q+ N+ R + L + + Sbjct: 187 SHFDAALKAAVKRAQQRYGLNPTGVVSGQTLQALNQPVKSRIHQIMANMERWR-WLPRNL 245 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 + VN+ AA L E + + + GR +TP+L S I ++ NP W +P SI Sbjct: 246 PENRIQVNVAAAVLTLFEKNQPVMSMKSVTGRPGNETPMLRSTIYSLVINPPWNVPDSIA 305 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 +K++ + P YL+ +I E G+ +Q PG N++ Sbjct: 306 KKELWPKEKAHPGYLQAAGFKIIGESGQGQ---------------RLQQKPGPRNSLGQL 350 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K +F + + Y+HDTP F+ R E+ GC+R+ + + L LL P W+ + Sbjct: 351 KFDFPNSYSVYLHDTPGRGAFSRYGRLESHGCIRLEHPVALGERLLAADPAWTGDRLRSE 410 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + +T V+L V V Y +A+ ++ + FR + Y D + I Sbjct: 411 IDKNETERVRLKQPVAVFLFYWTAFGNGENALSFRSEPYKWDELLAQKI 459 >gi|254437318|ref|ZP_05050812.1| Putative peptidoglycan binding domain protein [Octadecabacter antarcticus 307] gi|198252764|gb|EDY77078.1| Putative peptidoglycan binding domain protein [Octadecabacter antarcticus 307] Length = 541 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 103/371 (27%), Positives = 178/371 (47%), Gaps = 11/371 (2%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVSVQR 113 FL + +P S E + + + +L+ GGW P + L G S V Sbjct: 165 FLGSTPASYLATLPPSSSEYARLLREKMTL-ERLLANGGWGPSVSSSSLAAGASGAGVVA 223 Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 LR+RL+ G ++ S + +D +++AV+ FQ HGL G ++TL +NVP R+ Sbjct: 224 LRDRLVAMGHMERSA--TQTYDVTIQAAVQRFQQAHGLTADGDAGAATLAEINVPAASRL 281 Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTPIL 231 +Q+ V + R + + + G R+V VN+ S ++N V ++ ++G RQTP Sbjct: 282 QQIIVAMERER-WMNRPRGERHVWVNLVDFSAAIMDNDSVTFQTRSVIGATGSGRQTPEF 340 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP 291 ++ ++ NP W +PRSII + + +++ + +I + D G+ V V++++ Sbjct: 341 SDVMDHMVINPSWFVPRSIIVGEYLPAMQRSRDAIS--HILLTDGNGRTVNRGNVNFSNY 398 Query: 292 EPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 F F RQ P NA+ K F ++ N Y+HDTP LF +R + GC+R+ + Sbjct: 399 TARTFPFSMRQPPSSRNALGLVKFMFPNQYNIYLHDTPAKSLFAREIRAYSHGCIRLNDP 458 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 + LL + + ++ + T V L VPVH VY +A++ + FR DI Sbjct: 459 FEFGHALLAAQEADPEGYFQRILNSGTETRVNLVDPVPVHIVYRTAFTHTTGQLNFRRDI 518 Query: 410 YGLDNVHVGII 420 Y D+ + Sbjct: 519 YDRDSRIWNAL 529 >gi|262275620|ref|ZP_06053429.1| hypothetical protein VHA_002601 [Grimontia hollisae CIP 101886] gi|262219428|gb|EEY70744.1| hypothetical protein VHA_002601 [Grimontia hollisae CIP 101886] Length = 505 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 108/352 (30%), Positives = 172/352 (48%), Gaps = 16/352 (4%) Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLS- 131 + AI QD S W E L LG+ L L G L Sbjct: 144 QYRKMASAIVALQDNKSA-HWAEFTQGGLVRLGDRLEDPGSLITNLERQGALSAYDAQRL 202 Query: 132 -----VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 ++A + AVK FQ HGL G++ ++T MN+ RI+ L +N+ R++ Sbjct: 203 KRDQVNHYNATLVEAVKRFQENHGLKKDGVIGNNTRRWMNMSPSSRIQILALNMERLRLW 262 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 ++ + +LVNIP +E + K+ L S V+VGR R+TP+ SR++ ++FNP W + Sbjct: 263 PTER--EKIILVNIPNYEMEFWLDRKLILDSKVVVGRPSRRTPLFESRLDSVVFNPSWNV 320 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEEVDWNSPEPPNFIFR--QDP 302 P I+++D++ ++QD +YL ++ ++ G + EE+DW + P +F +R Q P Sbjct: 321 PVKIMREDILPKVQQDNEYLNKHSYTVLSSWVNGSVISAEEIDWETVSPNSFPYRLQQSP 380 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G NA+ K + N Y+HDTP LFN R +SGC+RV+ L LL Sbjct: 381 GSFNALGRYKFNTPNGNAIYLHDTPAKELFNKSRRAYSSGCIRVQKAEILAEILLN-KSG 439 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 E + +T V L ++ VH +Y +AW ++ +QFR+D+Y D Sbjct: 440 KRLGDYEYYQRIPETKWVSLRQKISVHTIYQTAWV-EEGKVQFREDVYRYDA 490 >gi|89074934|ref|ZP_01161384.1| hypothetical amidase [Photobacterium sp. SKA34] gi|89049331|gb|EAR54894.1| hypothetical amidase [Photobacterium sp. SKA34] Length = 587 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 111/418 (26%), Positives = 195/418 (46%), Gaps = 21/418 (5%) Query: 13 CFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK 72 F Y+ + + KPI S ++ D + L++++ I Sbjct: 168 AFQNYIATHRDVLFLSKPIRMSKSMT-----KYANGVDAYPMTLSKLEQFRPGYI----- 217 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL-- 130 + T AIA YQ++ + + G + + L + L GD+D + Sbjct: 218 -SFLPTMDAIAKYQNLPAHTLVKSNFKQAYRKGATLPNGHELIKVLYTLGDMDQADYDRL 276 Query: 131 ----SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 ++ V ++K FQ RHGL G++ ++T++ + +P R+L +N +R+ L Sbjct: 277 SVEPNITNTGAVFESLKTFQKRHGLANDGIIGAATVQQLVMPYGDIARRLALNKLRVATL 336 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + G ++ VNIP LE + G V S VIVGR +R T + S I ++ NPYW + Sbjct: 337 NKHTEGRPHIWVNIPNYKLEVFDKGNVVFESKVIVGRDNRPTNLFSSAITTMVVNPYWNV 396 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFI--FRQDP 302 P +I Q D++ ++ D YLK +N+ +++ + ++W + P F F+Q P Sbjct: 397 PITIKQHDVIPKVKHDIDYLKQHNMQILNSWRDRTVISPSSINWETVNPKTFPHEFQQGP 456 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ K + ++HDTP LF+ R +SGCVRV DL ++++ Sbjct: 457 GPRNSLGRVKFLMPNDYAIFLHDTPSRGLFSKNKRDLSSGCVRVERAYDLANYVIEYQNR 516 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + ++++ +K V L+ + V FVY++AW D +Q R+DIYG D+ I Sbjct: 517 GNIPKFKQMLDAQKQKTVSLSKRIDVDFVYLTAWVDHDGNVQMREDIYGYDSPSANKI 574 >gi|197106129|ref|YP_002131506.1| peptidoglycan binding domain protein [Phenylobacterium zucineum HLK1] gi|196479549|gb|ACG79077.1| peptidoglycan binding domain protein [Phenylobacterium zucineum HLK1] Length = 510 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 109/366 (29%), Positives = 167/366 (45%), Gaps = 20/366 (5%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRE 116 R+ +D P + + +A Y++I + GGW +P + +G++ V LR Sbjct: 154 RLKAWLDGLAPRYAG--YVALTRGLARYREIAAAGGWKTIPAGSSMAIGSTDPRVPALRA 211 Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 RL D + S FD ++ AV Q R GL P G+V + TL +N PV RI Q+ Sbjct: 212 RLAAE-DPQLTDLTSPTFDPALQEAVVRAQKRFGLKPDGVVGNGTLAFLNQPVGQRILQI 270 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 NL R + L M V VN AA + + K L + G+ +TP+L S I+ Sbjct: 271 IANLERWR-WLPATMPATRVQVNSGAAIVTLFRDDKPVLSMKAVSGKPGDETPMLVSAIH 329 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF 296 ++ NP W +P I +++ R+DP Y N+ ++ +G Sbjct: 330 SVVINPPWNVPTRIANEELWPKQRRDPGYFARNDYVVLPTEG---------------GGS 374 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 +Q PG A+ K +F + Y+HDTP F+ R + GCVR+ L L Sbjct: 375 RVQQKPGPKAALGRFKFDFDNPFTVYLHDTPSKGTFDLYARQASHGCVRLEKAQLLAEAL 434 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 L P W R IE + T KT V L+ +VPV+ +Y +A++ D + FR D Y D + Sbjct: 435 LASDPKWGREGIEAQLATGKTLRVSLSEQVPVYILYWTAFAGADGQMHFRADPYNWDRLL 494 Query: 417 VGIIPL 422 + I L Sbjct: 495 LTKIGL 500 >gi|89054636|ref|YP_510087.1| peptidoglycan binding domain-containing protein [Jannaschia sp. CCS1] gi|88864185|gb|ABD55062.1| Peptidoglycan-binding domain 1 [Jannaschia sp. CCS1] Length = 531 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 98/374 (26%), Positives = 178/374 (47%), Gaps = 15/374 (4%) Query: 52 FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRPLHLGNSSVS 110 F F++ + +P E + +A + ++ GG+ + L G + + Sbjct: 156 FTEFVSANPYEYIATLPPQHPE-YTRLMRAKLHLERMIDEGGYGATVQAGSLTPGATGSA 214 Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V +LR RL+ G LD S + +D ++ AV FQ+ +G++ G+ T+ A+N Sbjct: 215 VVQLRNRLMAMGYLDRSA--TATYDTRLQQAVMEFQVDNGINADGIAGGDTIRAVNRSAT 272 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR--QT 228 + ++ + + R + L G R++ VN+P +++G+V + ++G DR +T Sbjct: 273 EHLSEVILAMERQR-WLNVDRGPRHIFVNLPDFHTRVIDDGEVTFITRSVIGSRDRDRRT 331 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P + ++ NP W +PRSI + + +++ +L+ + G+ V VDW Sbjct: 332 PEFSDEMEHMVINPSWYVPRSIARGYIPSIMAGGANHLQ------LMSNGRPVNRGAVDW 385 Query: 289 NSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + NF F RQ PG NA+ K F ++ N Y+HD+P+ L + VR ++GCVR+ Sbjct: 386 SRVSAGNFPFDLRQPPGPRNALGLVKFMFPNQWNIYLHDSPDQHLMTHDVRAYSAGCVRL 445 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 + +L LL ++ + + T V L T +PVH VY ++W + + FR Sbjct: 446 DDPFELAYHLLAAQEDDPVTFFNTILNSSRETQVNLQTPLPVHIVYWTSWVDTEGRLNFR 505 Query: 407 DDIYGLDNVHVGII 420 +DIYG + I Sbjct: 506 NDIYGRNAELRQAI 519 >gi|119899290|ref|YP_934503.1| hypothetical protein azo3000 [Azoarcus sp. BH72] gi|119671703|emb|CAL95616.1| putative periplasmic protein [Azoarcus sp. BH72] Length = 543 Score = 374 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 110/403 (27%), Positives = 179/403 (44%), Gaps = 25/403 (6%) Query: 40 INESYHSIVNDRFDN--------FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 ++ +Y + FD RV+ + +P + A+A Y+ + + Sbjct: 126 VHAAYAGPAPEAFDADAYLRAALAEDRVEEAARAAVPPL--PLYGALRTALAHYRTLAAG 183 Query: 92 GG----W----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W P P R L G + L RL + GDL L ++ + AVK Sbjct: 184 ADAQAAWSLPLPLPPRRKLEPGQPYAGLALLARRLTLLGDLVADVPLPPRYEGALVDAVK 243 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 FQ+RHGL G+V TL + V R+RQ+++ + R++ R ++VN+P Sbjct: 244 RFQLRHGLAADGVVGRGTLAELEVAPAARVRQIELTMERLR-WTPLLQAPRMIVVNVPEF 302 Query: 204 SLEAVE--NGK--VGLRSTVIVGRV-DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 L A E +G+ V R VIVG+ D +TP+ + I F+PYW +P SI + +++ Sbjct: 303 MLRAYEVRDGRIEVAARMKVIVGKALDTRTPLFAEDMRFIEFSPYWNVPPSIARAELVPR 362 Query: 259 LRQDPQYLKDNNIHMIDEKG-KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 LR++P Y + G + ++ RQ PG NA+ K F + Sbjct: 363 LRREPGYWNAQGFEFVAGDGTANPTLSTAGLDAVLRGTLRIRQRPGPHNALGDIKFVFPN 422 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKT 377 +N Y+H TP P LF R + GC+RV ++L ++L+D P W I E + + Sbjct: 423 NDNIYLHHTPTPQLFARDRRDFSHGCIRVEAPVELARFVLRDQPEWDEARIREAMSAGSS 482 Query: 378 TPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 +++AT +PV Y +A + F DIYG D + + Sbjct: 483 KTIRVATPLPVLIAYGTAMVDAEGHAHFFRDIYGHDQLLHDTL 525 >gi|24373669|ref|NP_717712.1| hypothetical protein SO_2109 [Shewanella oneidensis MR-1] gi|24348019|gb|AAN55156.1|AE015652_5 conserved hypothetical protein [Shewanella oneidensis MR-1] Length = 502 Score = 374 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 109/373 (29%), Positives = 186/373 (49%), Gaps = 24/373 (6%) Query: 69 IISKETIAQTEKAIAFYQ--DILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLD 125 I ++++ ++ YQ + W L + L G S + + RL+I G L Sbjct: 129 IFTQQSSYYHAVSLTLYQLMQLEDLTSWELLTLEEKLSPGQQSPLISPIARRLLILGFLP 188 Query: 126 PS----------KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 + + + +A+KLFQ +HGL G++ TL +N R + Sbjct: 189 NELRMEPSVGVEANNGMLYGDELVTAIKLFQQQHGLLADGVIGKQTLFWLNQSPRARAKL 248 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 L N++R + + ++ RY+LVNIPA L+ +E+G+V LRS VIVG+ R TP+L S+I Sbjct: 249 LARNVLR-QSIFTAQLPARYLLVNIPAFELKLIEDGQVALRSKVIVGKASRPTPLLASQI 307 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 + ++ NP W +PR+II++D++ +RQD YL + + G++ +W + + Sbjct: 308 SSVVMNPEWRVPRTIIKRDILPHIRQDGHYLTEREFDVYAYDGQQAEHSADEWQALASSH 367 Query: 296 FIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 F + Q PG NA+ K F + + Y+H T EP LF R +SGC+RV + +L Sbjct: 368 FPYQLVQRPGPKNALGRYKFHFDNSFSVYLHGTSEPSLFKRTNRALSSGCIRVEKVEELA 427 Query: 354 VW----LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 +W L+KD W + H + T ++ L+ ++PV VY + W +Q+R+DI Sbjct: 428 LWFKTHLVKDQRLWDKLHTD----TTQSQWFALSDKLPVFVVYWTVWLDDAGQVQYRNDI 483 Query: 410 YGLDNVHVGIIPL 422 Y ++ + Sbjct: 484 YQQESELSHAVSA 496 >gi|269102554|ref|ZP_06155251.1| hypothetical amidase [Photobacterium damselae subsp. damselae CIP 102761] gi|268162452|gb|EEZ40948.1| hypothetical amidase [Photobacterium damselae subsp. damselae CIP 102761] Length = 588 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 118/412 (28%), Positives = 189/412 (45%), Gaps = 21/412 (5%) Query: 13 CFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK 72 F Y+ KPI+ S S + F LAR++ +++ Sbjct: 168 AFEQYIKTHRNQLFTTKPINMSK-----EMSSYVSNEKAFPMTLARLEQQRPANV----- 217 Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS----- 127 T +AIA +Q + G+ + + L GDLD + Sbjct: 218 -NFEATMQAIAKFQALEPNPLKASYLPAVYRKGDRIPHGKAVARVLYDLGDLDQANYDKL 276 Query: 128 -KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 S++ + A+K FQ R+GL G++ ST + + +P R+L +N+ R + Sbjct: 277 MAAKSISNTGVMNDAIKHFQKRYGLSADGIIGKSTAQQLAIPYGELARRLALNMQRANVI 336 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 ++LVNIP L+ ENGKV S VIVGR R T + S IN ++ NPYW + Sbjct: 337 APFAKDKAHILVNIPDYMLKVYENGKVVFDSKVIVGRESRPTNLFSSSINTMVVNPYWNV 396 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEEVDWNSPEPPNFI--FRQDP 302 P +I QKD++ +++P YL +NI +I+ E+ V ++W++ P +F F+Q P Sbjct: 397 PITIKQKDVIPKAKRNPGYLAAHNIKVINSWRDRTEIPVSSINWSAVNPKSFPHEFQQGP 456 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G N++ K + ++HDTP LF+ R +SGCVRV DL ++L Sbjct: 457 GPHNSLGMVKFLMPNDYAIFLHDTPARGLFSKTKRDLSSGCVRVARAHDLADFVLDYQNR 516 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 S + + K + V L+ + V FVY++ W +D +Q R+DIY D Sbjct: 517 PSMRTFDSMRKDKGQDTVSLSRRIGVDFVYLTGWVNQDGQVQMREDIYNYDT 568 >gi|114047641|ref|YP_738191.1| peptidoglycan binding domain-containing protein [Shewanella sp. MR-7] gi|113889083|gb|ABI43134.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. MR-7] Length = 558 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 115/434 (26%), Positives = 183/434 (42%), Gaps = 67/434 (15%) Query: 51 RFDNFLARVDMGIDSDIPIISKE------TIAQTEKAIAFYQDILSRGGWPELPIR-PLH 103 + DN+ +D + P S + + W L + L Sbjct: 124 QLDNYWQYLDTQAECITPCRSAALMPTDAYFRAVVLKLKQLMALAESSSWETLILEDKLS 183 Query: 104 LGNSSVSVQRLRERLIISGDLD-------------------------------------- 125 G S + + +RL + G L Sbjct: 184 PGQESPLIAPIAQRLFLLGFLAEMPSTASESVVDKAALPVSELGSEPVIKSDIISPEATN 243 Query: 126 -----------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 + + +D + A+K FQ +HGL G++ TL +N R + Sbjct: 244 QAETVARTEQAATDNNPMRYDDELVRAIKNFQTQHGLQADGVIGKQTLYWLNQSPYARAK 303 Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 L N +R++ + + Y+++NIPA L+ VE GKV L S VIVG+ R TP+L S Sbjct: 304 LLAKNTLRLQIF-TRTLPASYLVINIPAFELQFVEAGKVILNSKVIVGKASRPTPLLSSH 362 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 I+ ++ NP W +PR+I+++D++ +RQD YL+D + D G V +W Sbjct: 363 ISSVVVNPQWRVPRTIVRRDILPHIRQDGHYLQDRGFDVYDYDGARVEHSPQEWQELASS 422 Query: 295 NFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 +F +R Q PG NA+ K F + + Y+H T EP LF R +SGC+RV + +L Sbjct: 423 HFPYRLVQRPGAKNALGRYKFHFDNSFSVYLHGTSEPSLFKKTDRALSSGCIRVEKVEEL 482 Query: 353 DVW----LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 W L+KDT W + T ++ L+ +PV+ VY +AW IQ+R+D Sbjct: 483 ARWFQTHLVKDTRLWDKL----TPNTTQSQWFALSDTMPVYTVYWTAWLDDAGQIQYRND 538 Query: 409 IYGLDNVHVGIIPL 422 IY L+ +P Sbjct: 539 IYHLEAEFSQAVPA 552 >gi|260772914|ref|ZP_05881830.1| hypothetical protein VIB_001376 [Vibrio metschnikovii CIP 69.14] gi|260612053|gb|EEX37256.1| hypothetical protein VIB_001376 [Vibrio metschnikovii CIP 69.14] Length = 512 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 96/423 (22%), Positives = 185/423 (43%), Gaps = 22/423 (5%) Query: 10 ILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPI 69 + + +G + +D N + I+ + +R+ + + + P Sbjct: 98 WVKYDVLATDTVIGYLSYAQLAAQEGIDWFFNGKLNRILP--LPSASSRLALSVAAGTPA 155 Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELPIRPL---------HLGNSSVSVQRLRERLII 120 ++ + + A++Q + + G L PL G+ L +RL + Sbjct: 156 MADLVLQHAPQDPAYHQLVYAYGFLSALKTTPLPVYRQAGLKRPGDKLDDRPTLIQRLAL 215 Query: 121 SG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 D+ + +D + +K FQ HGL+ G++ TL+ +N+ V+ R+ + +N Sbjct: 216 VNIDVTVIRDDVSWYDNSLIEPIKHFQQLHGLNADGVIGPQTLKWLNLSVEERLGLIALN 275 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 R++ ++VN+P+ L+ G+ +S V+VGR+ R TP++ +R++ ++ Sbjct: 276 AERMRLWPTSNTS---IVVNVPSFELKYWHAGENVFQSKVVVGRISRPTPVMTTRLDSLI 332 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--KEVFVEEVDWNSPEPPNFI 297 NP W IP I+ +D++ + ++D +YL N+ ++ G + + +DW + F Sbjct: 333 VNPTWNIPYKIMVEDILPMAKRDLRYLDRQNLEILPRWGATQTLDPTSIDWENISLEAFP 392 Query: 298 F--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 + RQ G NA+ K +R ++HDTP LF R +SGC+RV + Sbjct: 393 YRMRQRAGYHNALGLYKFNTPNRRAIFLHDTPSKYLFERDSRAFSSGCIRVEHADQFANM 452 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 LL S+ + + L +PV +Y +AW + FR+DIY LD + Sbjct: 453 LLTKQGLDSQQF--APQSSSVNQAIPLRQRIPVQIIYQTAWYDA-GQLHFREDIYRLDKL 509 Query: 416 HVG 418 Sbjct: 510 VTQ 512 >gi|146299527|ref|YP_001194118.1| peptidoglycan binding domain-containing protein [Flavobacterium johnsoniae UW101] gi|146153945|gb|ABQ04799.1| Peptidoglycan-binding domain 1 protein [Flavobacterium johnsoniae UW101] Length = 526 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 99/316 (31%), Positives = 175/316 (55%), Gaps = 4/316 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ + L +++ ++ ++++L+ D+ L+ +D AVK FQ RHGL G++ Sbjct: 207 VKKITLKDTNNALINIKKKLLFWKDMSGKDSLTDKYDEKTFEAVKKFQARHGLADDGVIG 266 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 T+ A+N + R +Q+ NL R + ++ Y ++NIP SL VEN L Sbjct: 267 IGTISALNYSKERRKQQIIANLERWR-WYPTELAENYFIINIPDYSLHVVENQDTTLVRN 325 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 ++VG R+TPI+ S + ++FNP W +P +I+++D++ ++++ YL NI + D G Sbjct: 326 IVVGTSSRKTPIITSVLKTVVFNPTWTVPPTILKEDVVPAMKRNRNYLAKKNITIYDTSG 385 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 K V WN +P N+ + Q PG N++ KI F + ++ Y+HDT F R Sbjct: 386 KVVEPSA--WNENKPNNYRYVQSPGYNNSLGLMKILFPNHHSVYLHDTNHRNYFVRNNRS 443 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 +SGCVRV N ++L +L D+ +S+ I+ ++ ++KT K+ + ++ Y +AWS Sbjct: 444 LSSGCVRVENPLELAEHILNDSIRFSKVKIDTIIASKKTMSFKITKKYALYQWYWTAWS- 502 Query: 399 KDSIIQFRDDIYGLDN 414 K + + FR DIY LD+ Sbjct: 503 KKNQLIFRADIYNLDS 518 >gi|254291719|ref|ZP_04962506.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|150422403|gb|EDN14363.1| conserved hypothetical protein [Vibrio cholerae AM-19226] Length = 524 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 166/322 (51%), Gaps = 16/322 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ + L +RL + +LD + L+ +DA +E +K FQ HGL P G++ Sbjct: 202 RPGDPLSHREALVQRLALV-NLDTTSILNDVAYYDASLEKPIKQFQKMHGLQPDGVIGPQ 260 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ + V+ Sbjct: 261 TMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYWDAGREVFEAKVV 318 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-- 278 VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL ++++ +I Sbjct: 319 VGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDP 378 Query: 279 KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + + +DW + EP F + RQ G NA+ + K + Y+HDTP LFNN Sbjct: 379 EVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNAS 438 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGC+RV N LL + T + L +PVH +Y + W Sbjct: 439 RAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS------TQAIALKKRIPVHIIYQTVW 492 Query: 397 SPKDSIIQFRDDIYGLDNVHVG 418 ++ ++ +RDDIY D + +G Sbjct: 493 Y-EEGVLHYRDDIYHYDALALG 513 >gi|153212308|ref|ZP_01948096.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124116686|gb|EAY35506.1| conserved hypothetical protein [Vibrio cholerae 1587] Length = 524 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 166/322 (51%), Gaps = 16/322 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ + L +RL + +LD + L+ +DA +E +K FQ HGL P G++ Sbjct: 202 RPGDPLSHREALVQRLALV-NLDTTSILNDVAYYDASLEKPIKQFQKMHGLQPDGVIGPQ 260 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ + V+ Sbjct: 261 TMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYWDAGREVFEAKVV 318 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-- 278 VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL ++++ +I Sbjct: 319 VGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDP 378 Query: 279 KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + + +DW + EP F + RQ G NA+ + K + Y+HDTP LFNN Sbjct: 379 EVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNAS 438 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGC+RV N LL + T + L +PVH +Y + W Sbjct: 439 RAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS------TQAIALKKRIPVHIIYQTVW 492 Query: 397 SPKDSIIQFRDDIYGLDNVHVG 418 ++ ++ +RDDIY D + +G Sbjct: 493 Y-EEGVLHYRDDIYHYDALALG 513 >gi|15641281|ref|NP_230913.1| hypothetical protein VC1268 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227081440|ref|YP_002809991.1| hypothetical protein VCM66_1223 [Vibrio cholerae M66-2] gi|229505145|ref|ZP_04394655.1| hypothetical protein VCF_000353 [Vibrio cholerae BX 330286] gi|229511183|ref|ZP_04400662.1| hypothetical protein VCE_002590 [Vibrio cholerae B33] gi|229518302|ref|ZP_04407746.1| hypothetical protein VCC_002326 [Vibrio cholerae RC9] gi|229608165|ref|YP_002878813.1| hypothetical protein VCD_003083 [Vibrio cholerae MJ-1236] gi|298498640|ref|ZP_07008447.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9655753|gb|AAF94427.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227009328|gb|ACP05540.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|229345017|gb|EEO09991.1| hypothetical protein VCC_002326 [Vibrio cholerae RC9] gi|229351148|gb|EEO16089.1| hypothetical protein VCE_002590 [Vibrio cholerae B33] gi|229357368|gb|EEO22285.1| hypothetical protein VCF_000353 [Vibrio cholerae BX 330286] gi|229370820|gb|ACQ61243.1| hypothetical protein VCD_003083 [Vibrio cholerae MJ-1236] gi|297542973|gb|EFH79023.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 524 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 165/322 (51%), Gaps = 16/322 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ + L +RL + +LD + L+ +DA +E +K FQ HGL G++ Sbjct: 202 RPGDPLSHREALVQRLALV-NLDTTSILNDVAYYDASLEKPIKQFQKMHGLQTDGVIGPQ 260 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ S V+ Sbjct: 261 TMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYWDAGREVFESKVV 318 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-- 278 VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL ++++ +I Sbjct: 319 VGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDP 378 Query: 279 KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + + +DW + EP F + RQ G NA+ + K + Y+HDTP LFNN Sbjct: 379 EVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNAS 438 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGC+RV N LL + T + L +PVH +Y + W Sbjct: 439 RAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS------TQAIALKKRIPVHIIYQTVW 492 Query: 397 SPKDSIIQFRDDIYGLDNVHVG 418 ++ ++ +RDDIY D + +G Sbjct: 493 Y-EEGVLHYRDDIYHYDALALG 513 >gi|254848392|ref|ZP_05237742.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255745664|ref|ZP_05419612.1| L,D-transpeptidase YcbB [Vibrio cholera CIRS 101] gi|262159059|ref|ZP_06030171.1| L,D-transpeptidase YcbB [Vibrio cholerae INDRE 91/1] gi|254844097|gb|EET22511.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255736739|gb|EET92136.1| L,D-transpeptidase YcbB [Vibrio cholera CIRS 101] gi|262029244|gb|EEY47896.1| L,D-transpeptidase YcbB [Vibrio cholerae INDRE 91/1] Length = 523 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 165/322 (51%), Gaps = 16/322 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ + L +RL + +LD + L+ +DA +E +K FQ HGL G++ Sbjct: 201 RPGDPLSHREALVQRLALV-NLDTTSILNDVAYYDASLEKPIKQFQKMHGLQTDGVIGPQ 259 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ S V+ Sbjct: 260 TMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYWDAGREVFESKVV 317 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-- 278 VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL ++++ +I Sbjct: 318 VGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDP 377 Query: 279 KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + + +DW + EP F + RQ G NA+ + K + Y+HDTP LFNN Sbjct: 378 EVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNAS 437 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGC+RV N LL + T + L +PVH +Y + W Sbjct: 438 RAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS------TQAIALKKRIPVHIIYQTVW 491 Query: 397 SPKDSIIQFRDDIYGLDNVHVG 418 ++ ++ +RDDIY D + +G Sbjct: 492 Y-EEGVLHYRDDIYHYDALALG 512 >gi|121729970|ref|ZP_01682389.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147674156|ref|YP_001216833.1| hypothetical protein VC0395_A0887 [Vibrio cholerae O395] gi|121628291|gb|EAX60802.1| conserved hypothetical protein [Vibrio cholerae V52] gi|146316039|gb|ABQ20578.1| conserved hypothetical protein [Vibrio cholerae O395] gi|227013185|gb|ACP09395.1| conserved hypothetical protein [Vibrio cholerae O395] Length = 524 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 89/322 (27%), Positives = 166/322 (51%), Gaps = 16/322 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ + L +RL + +LD + L+ +DA +E +K FQ HGL P G++ Sbjct: 202 RPGDPLSHREALVQRLALV-NLDTTSILNDVAYYDASLEKPIKQFQKMHGLQPDGVIGPQ 260 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ + V+ Sbjct: 261 TMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYWDAGREVFEAKVV 318 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-- 278 VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL ++++ +I Sbjct: 319 VGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDP 378 Query: 279 KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + + +DW + +P F + RQ G NA+ + K + Y+HDTP LFNN Sbjct: 379 EVIDPALIDWETVDPATFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNAS 438 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGC+RV N LL + T + L +PVH +Y + W Sbjct: 439 RAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS------TQAIALKKRIPVHIIYQTVW 492 Query: 397 SPKDSIIQFRDDIYGLDNVHVG 418 ++ ++ +RDDIY D + +G Sbjct: 493 Y-EEGVLHYRDDIYHYDALALG 513 >gi|153801328|ref|ZP_01955914.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|229529651|ref|ZP_04419041.1| hypothetical protein VCG_002746 [Vibrio cholerae 12129(1)] gi|124123153|gb|EAY41896.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|229333425|gb|EEN98911.1| hypothetical protein VCG_002746 [Vibrio cholerae 12129(1)] Length = 524 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 166/322 (51%), Gaps = 16/322 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ + L +RL + +LD + L+ +DA +E +K FQ HGL P G++ Sbjct: 202 RPGDPLSHREALVQRLALV-NLDTTSILNDVAYYDASLEKLIKQFQKMHGLQPDGVIGPQ 260 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ + V+ Sbjct: 261 TMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYWDAGREVFEAKVV 318 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-- 278 VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL ++++ +I Sbjct: 319 VGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDP 378 Query: 279 KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + + +DW + EP F + RQ G NA+ + K + Y+HDTP LFNN Sbjct: 379 EVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNAS 438 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGC+RV N LL + T + L +PVH +Y + W Sbjct: 439 RAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS------TQAIALKKRIPVHIIYQTVW 492 Query: 397 SPKDSIIQFRDDIYGLDNVHVG 418 ++ ++ +RDDIY D + +G Sbjct: 493 Y-EEGVLHYRDDIYHYDALALG 513 >gi|312961568|ref|ZP_07776069.1| hypothetical protein PFWH6_3485 [Pseudomonas fluorescens WH6] gi|311284247|gb|EFQ62827.1| hypothetical protein PFWH6_3485 [Pseudomonas fluorescens WH6] Length = 533 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 109/368 (29%), Positives = 174/368 (47%), Gaps = 11/368 (2%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQR 113 L + D P S + + + W + PL G V Sbjct: 171 GLQDMAQAFDQARP--SADLYRSLRNVYSSMRQ-QPLPHWDPVGSGPLLRPGMEDPRVPE 227 Query: 114 LRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 L RL G L + G + + SAVK FQ+ H L G++ + T+ +N+ +R Sbjct: 228 LARRLHSGGYLPAERQGNGKQYSPELVSAVKAFQLSHSLQSDGVIGAGTVAELNISPAMR 287 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 QL++NL R + L + + VLVN+ AA L ++G ++ + VGR +RQTP+L Sbjct: 288 REQLRINLERFR-WLAKDLEPEGVLVNVAAAQLSVYQSGIPVWQTRLQVGRAERQTPLLK 346 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 SRI R+ NP W IP +I+++D + +R +P+YL+ N+ ++D +G + E +DW Sbjct: 347 SRITRLTLNPTWTIPPTIMREDKLPAIRLNPEYLRQQNLQVLDAEGHALAPELIDWA--R 404 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 P N + RQ+ G N + + F + + Y+HDTP LF R +SGCVRV + L Sbjct: 405 PGNILLRQEAGPRNPLGKIVMRFPNPYSVYLHDTPSQPLFTKGPRAFSSGCVRVEQPLLL 464 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 L+ R +E++ T T +LAT VPV Y + + + + DIY Sbjct: 465 RDLLVSPA---ERARTDELLATGVTHEFRLATPVPVLLGYWTVEVDRQGGLVYAPDIYAR 521 Query: 413 DNVHVGII 420 D V + + Sbjct: 522 DLVLMKAM 529 >gi|262169418|ref|ZP_06037110.1| L,D-transpeptidase YcbB [Vibrio cholerae RC27] gi|262022231|gb|EEY40940.1| L,D-transpeptidase YcbB [Vibrio cholerae RC27] Length = 523 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 89/322 (27%), Positives = 166/322 (51%), Gaps = 16/322 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ + L +RL + +LD + L+ +DA +E +K FQ HGL P G++ Sbjct: 201 RPGDPLSHREALVQRLALV-NLDTTSILNDVAYYDASLEKPIKQFQKMHGLQPDGVIGPQ 259 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ + V+ Sbjct: 260 TMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYWDAGREVFEAKVV 317 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-- 278 VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL ++++ +I Sbjct: 318 VGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDP 377 Query: 279 KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + + +DW + +P F + RQ G NA+ + K + Y+HDTP LFNN Sbjct: 378 EVIDPALIDWETVDPATFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNAS 437 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGC+RV N LL + T + L +PVH +Y + W Sbjct: 438 RAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS------TQAIALKKRIPVHIIYQTVW 491 Query: 397 SPKDSIIQFRDDIYGLDNVHVG 418 ++ ++ +RDDIY D + +G Sbjct: 492 Y-EEGVLHYRDDIYHYDALALG 512 >gi|153823871|ref|ZP_01976538.1| putative peptidoglycan binding domain protein [Vibrio cholerae B33] gi|126518613|gb|EAZ75836.1| putative peptidoglycan binding domain protein [Vibrio cholerae B33] Length = 519 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 165/322 (51%), Gaps = 16/322 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ + L +RL + +LD + L+ +DA +E +K FQ HGL G++ Sbjct: 201 RPGDPLSHREALVQRLALV-NLDTTSILNDVAYYDASLEKPIKQFQKMHGLQTDGVIGPQ 259 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ S V+ Sbjct: 260 TMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYWDAGREVFESKVV 317 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-- 278 VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL ++++ +I Sbjct: 318 VGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDP 377 Query: 279 KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + + +DW + EP F + RQ G NA+ + K + Y+HDTP LFNN Sbjct: 378 EVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNAS 437 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGC+RV N LL + T + L +PVH +Y + W Sbjct: 438 RAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS------TQAIALKKRIPVHIIYQTVW 491 Query: 397 SPKDSIIQFRDDIYGLDNVHVG 418 ++ ++ +RDDIY D + +G Sbjct: 492 Y-EEGVLHYRDDIYHYDALALG 512 >gi|153827569|ref|ZP_01980236.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|149738468|gb|EDM52864.1| conserved hypothetical protein [Vibrio cholerae MZO-2] Length = 524 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 166/322 (51%), Gaps = 16/322 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ + L +RL + +LD + L+ +DA +E +K FQ HGL P G++ Sbjct: 202 RPGDPLSHREALVQRLALV-NLDTTSILNDVAYYDASLEKLIKQFQKMHGLQPDGVIGPQ 260 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ + V+ Sbjct: 261 TMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYWDAGREVFEAKVV 318 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-- 278 VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL ++++ +I Sbjct: 319 VGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDP 378 Query: 279 KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + + +DW + EP F + RQ G NA+ + K + Y+HDTP LFNN Sbjct: 379 EVIDPALIDWETVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNAS 438 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGC+RV N LL + T + L +PVH +Y + W Sbjct: 439 RAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS------TQAIALKKRIPVHIIYQTVW 492 Query: 397 SPKDSIIQFRDDIYGLDNVHVG 418 ++ ++ +RDDIY D + +G Sbjct: 493 Y-EEGVLHYRDDIYHYDALALG 513 >gi|114562617|ref|YP_750130.1| peptidoglycan binding domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114333910|gb|ABI71292.1| Peptidoglycan-binding domain 1 protein [Shewanella frigidimarina NCIMB 400] Length = 473 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 108/397 (27%), Positives = 180/397 (45%), Gaps = 4/397 (1%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 IL MG + + ++ + ++ V+ FD+ + + S + Sbjct: 58 ILQMGSAAEQLEYIDNIQQSVAAFWHNKQVSLPFDSMDNTTSLRDKNIALEPSVDDYLGV 117 Query: 79 EKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 + + WP + + L G+ S++++ +RL + GD + + Sbjct: 118 INDLRKLMWLSQTQDWPAITLEGLLRPGDRHPSIKQINQRLWLLGDAYEYLEDEIDYQPA 177 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + +VK FQ RHGL ++ TL +N R L + + L Q + Y+L Sbjct: 178 LVQSVKRFQSRHGLKTDAVIGPKTLFWLNQTPQQRASLLAKSFVEKTVYLSQ-LPQPYLL 236 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 +NIPA + V+ +V L S VIVG+ RQTP++ +I+ I+ NP W +PR +++KD++ Sbjct: 237 INIPAFQMVLVDQNQVVLASKVIVGKSYRQTPVMTGQISNIVINPTWTVPRQLLRKDILP 296 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEF 315 +R + Y D + + D +G V W F +R Q PG NA+ K F Sbjct: 297 QVRSNGAYFADRHFDVFDYEGHRVDKTPQQWQQAATGKFPYRVVQRPGSGNALGRYKFHF 356 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 + + Y+HDTP P +F +V R +SGCVR+ + L W R Sbjct: 357 NNDQSVYLHDTPTPEMFAHVERDISSGCVRIEKVQQLADWFANHLVIDKRTWAHLQSNHT 416 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 +T L++ +PVH VY AW + + Q+RDDIY L Sbjct: 417 QTQWFALSSSLPVHMVYWRAWVDEQHVAQYRDDIYQL 453 >gi|113970169|ref|YP_733962.1| peptidoglycan binding domain-containing protein [Shewanella sp. MR-4] gi|113884853|gb|ABI38905.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. MR-4] Length = 542 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 113/418 (27%), Positives = 186/418 (44%), Gaps = 51/418 (12%) Query: 51 RFDNFLARVDMGIDSDIPIISKE------TIAQTEKAIAFYQDILSRGGWPELPIR-PLH 103 + DN+ +D + P S + + W L + L Sbjct: 124 QLDNYWRYLDTQAECITPCRSAALMPTDAYFRAVVLKLKQLMALAESSSWETLILEDKLS 183 Query: 104 LGNSSVSVQRLRERLIISGDLD---------------------------------PSKGL 130 G S + + +RL + G L + Sbjct: 184 PGQESPLIALIVQRLFLLGFLADKPSPVSETAADPEALSPDVTTHPESKAYPAQGSADKN 243 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + ++ + +A+K+FQ +HGL G++ TL +N R + L N +R +++ + Sbjct: 244 PMLYNDELVAAIKVFQTQHGLQADGVIGKQTLYWLNQSPYARAQLLAKNTLR-QQIFTRT 302 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 + Y+++N+PA L+ VE GKV L S VIVG+ R TP+L S I+ ++ NP W +PR+I Sbjct: 303 LPASYLVINVPAFELQFVEAGKVILNSKVIVGKASRPTPLLSSHISSVVVNPQWRVPRTI 362 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAM 308 +++D++ +RQD YL+D + D G V +W +F +R Q PG NA+ Sbjct: 363 VRRDILPHIRQDGHYLQDRGFDVYDYDGARVEHSPQEWQELASSHFPYRLVQRPGAKNAL 422 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW----LLKDTPTWS 364 K F + + Y+H T EP LF R +SGC+RV + +L W L+KDT W Sbjct: 423 GRYKFHFDNSFSVYLHGTSEPSLFKKTDRALSSGCIRVEKVEELARWFQTHLVKDTRLWD 482 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + T ++ L+ +PV+ VY +AW IQ+R+DIY L+ +P Sbjct: 483 KL----TPNTTQSQWFALSDTMPVYTVYWTAWLDDAGQIQYRNDIYHLEAEFTQAVPA 536 >gi|170726506|ref|YP_001760532.1| peptidoglycan-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|169811853|gb|ACA86437.1| Peptidoglycan-binding domain 1 protein [Shewanella woodyi ATCC 51908] Length = 461 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 108/381 (28%), Positives = 180/381 (47%), Gaps = 6/381 (1%) Query: 38 EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL 97 E+ N + R + + + S P S I + + W L Sbjct: 76 EVANFWRSVKIQSRGEGGSDDLYRNVISLEP--SSSDYLPISNRIRYLLWVEQTESWQPL 133 Query: 98 PIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ + +V+ + RL GDL+ + + + V FQ RHGL G+ Sbjct: 134 VLDIWLKEGDINPAVKVISRRLNWLGDLNFLDPDNSVMTSELVRGVLNFQRRHGLKQDGV 193 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 + TL +N+ R L N + L +G R++LVNIPA + V+ G+V L Sbjct: 194 IGPETLRWINLTPKKRAALLAENFISKSSYLS-TIGPRFLLVNIPAFEMVLVDKGQVQLE 252 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 S VIVG+ RQTP L S I+ ++ NP W +PR+++++D++ +R+D Y+ ++N + + Sbjct: 253 SRVIVGKPYRQTPRLSSYISNMVLNPSWRVPRTLLRRDLLPKVRKDGAYISEHNFDVFNS 312 Query: 277 KGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 G E+ +W + F +R Q PGK N + K F + N Y+HDT + LF Sbjct: 313 AGDEIVKSPEEWQTLAGGRFPYRLVQKPGKDNTLGRYKFYFKNEYNVYLHDTYDKALFEE 372 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 R +SGC+RV + L WL + + + ++ + KT + VH VY + Sbjct: 373 SNRALSSGCIRVEKVESLANWLASNLVSDKQTWVDLQTERDKTQWFAFDNFLAVHLVYWT 432 Query: 395 AWSPKDSIIQFRDDIYGLDNV 415 AW + + QFR+DIY +++ Sbjct: 433 AWVDESGLAQFRNDIYHQNSM 453 >gi|197334392|ref|YP_002155958.1| cell wall degradation protein [Vibrio fischeri MJ11] gi|197315882|gb|ACH65329.1| cell wall degradation protein [Vibrio fischeri MJ11] Length = 512 Score = 371 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 94/354 (26%), Positives = 179/354 (50%), Gaps = 14/354 (3%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 S + + + ++ Y + R + N V + RL +SG+++ + Sbjct: 157 SSDQYEELYRRLSHYYQPYEDSESVFIKERLIRP-NQFTDVNAIIYRLQVSGEINHQEAE 215 Query: 131 ------SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + +D+ + +K FQ RHGL G++ TL +N+ R+R + +N+ R++ Sbjct: 216 MLLRQSNGHYDSSLVLIIKEFQKRHGLKQDGIIGPKTLHWLNMTAKERVRIMALNIQRLR 275 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + +VLVNIP+ + + G++ S VIVG+ +R+TPI +R+N I+FNP W Sbjct: 276 LW--ENKNSHFVLVNIPSYEMAYWQEGELVFTSKVIVGKPERRTPIFTTRLNAIVFNPEW 333 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEEVDWNSPEPPNFIF--RQ 300 +P I+++D++ + +L+ N +I + + ++++DW F + +Q Sbjct: 334 KVPTKIMREDILPKALSNKDFLQSQNFEIIPTWLSKEVISIDDIDWEQVNVETFPYKLKQ 393 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 G NA+ K +RN Y+HDTP LF+ R +SGC+RV + L+K++ Sbjct: 394 KSGNTNALGRYKFNTPNRNAIYLHDTPSRSLFSKQHRAYSSGCIRVEKASEFAQLLMKES 453 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +S ++ + +T+ V L ++ V+ +Y ++W +D+ +QFR+DIY D Sbjct: 454 -HFSTQDYKDYHELPETSKVTLDQKISVYTIYQTSWVGEDNQVQFRNDIYKYDE 506 >gi|229521381|ref|ZP_04410800.1| hypothetical protein VIF_001911 [Vibrio cholerae TM 11079-80] gi|229341479|gb|EEO06482.1| hypothetical protein VIF_001911 [Vibrio cholerae TM 11079-80] Length = 524 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 89/322 (27%), Positives = 165/322 (51%), Gaps = 16/322 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ + L +RL + +LD + L+ +DA +E +K FQ HGL P G++ Sbjct: 202 RPGDPLSHREALVQRLALV-NLDTTSILNDVAYYDASLEKPIKQFQKMHGLQPDGVIGPQ 260 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ + V+ Sbjct: 261 TMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYWDAGREVFEAKVV 318 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-- 278 VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL ++ + +I Sbjct: 319 VGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHRMEIIRGWSDP 378 Query: 279 KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + + +DW + +P F + RQ G NA+ + K + Y+HDTP LFNN Sbjct: 379 EVIDPALIDWETVDPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNAS 438 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGC+RV N LL + T + L +PVH +Y + W Sbjct: 439 RAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS------TQAIALKKRIPVHIIYQTVW 492 Query: 397 SPKDSIIQFRDDIYGLDNVHVG 418 ++ ++ +RDDIY D + +G Sbjct: 493 Y-EEGVLHYRDDIYHYDALALG 513 >gi|91975886|ref|YP_568545.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91682342|gb|ABE38644.1| Peptidoglycan-binding domain 1 [Rhodopseudomonas palustris BisB5] Length = 716 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 111/429 (25%), Positives = 175/429 (40%), Gaps = 43/429 (10%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLA---RVDMGIDSDIPIIS 71 ++ +H S I H I + +DS P Sbjct: 241 LTESMMDYARQAQSGRMHWSQAGSDIQYPEHPIDPAEVLANVTTAKDASAALDSYNPPHK 300 Query: 72 KETIAQTEKAIAFYQ--------DILSRGGWPELPIRPLHL--GNSSVSVQRLRERLIIS 121 + +K +A + I +P R V +LR +L I+ Sbjct: 301 P--YRELKKKLAELRGESGMPVLKIAEGETLKFVPARKKQPAVTMDDPRVPQLRAKLGIT 358 Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNL 180 D D S +DA V AV+ FQ L P+G++D T++ +N P R I + VN+ Sbjct: 359 EDAD-----SSTYDAKVAEAVRKFQRSADLKPTGVLDDRTVKVLNTPKRDRSIDTIIVNM 413 Query: 181 MRIKKLLEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV-DRQTPILHSRI 235 R + L Q +G YV++NIP +L+ ++NG + V+ G+ TP+L + Sbjct: 414 ERWRWLPRQLGAASIGNAYVILNIPDYTLKVMQNGAQVWTTRVVTGKPGKHATPLLTETM 473 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 I NP W +P SII + + L QDP L + M + + + Sbjct: 474 KYITVNPTWNVPPSIINNEYLPALAQDPTVLDRMGLKMSRNRDGSIHIS----------- 522 Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 Q PG+ NA+ + F ++ Y HDTP+ LF R + GC+RV+N Sbjct: 523 ----QPPGEANALGRVRFNFPNKFLVYQHDTPDKNLFARDERAFSHGCMRVQNPDQYAAA 578 Query: 356 LLKDTPTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 LL T RY E++ + R +K T +PV+ Y +A+ D +Q R DIYG D Sbjct: 579 LLNITMPNERYTPEKIRSMYGRSEIDLKFPTPIPVNITYQTAFVDDDGKLQIRKDIYGRD 638 Query: 414 NVHVGIIPL 422 + + I+ Sbjct: 639 SAMLAILRN 647 >gi|89073969|ref|ZP_01160475.1| hypothetical protein SKA34_15405 [Photobacterium sp. SKA34] gi|89050297|gb|EAR55801.1| hypothetical protein SKA34_15405 [Photobacterium sp. SKA34] Length = 579 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 115/422 (27%), Positives = 188/422 (44%), Gaps = 38/422 (9%) Query: 6 KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDS 65 K N L+ ILP+ D I E S R F+AR+ + Sbjct: 169 KGNLWLFGDIPPTILPLPS------------DRFIEELLTSHEQQRLRFFIARLKPLDNE 216 Query: 66 DIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDL 124 +++ A+ +I WP + + G +++ + L GD+ Sbjct: 217 YTELVT---------ALNKLNEIRDT-RWPVFLFKGIIQPGKYVKNIEGVVTVLETLGDM 266 Query: 125 DPSKGLS------VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 + + V AVK FQ RHGL G++ + T + + + + RIR L + Sbjct: 267 TTLEAENVRSQKIQYLSGSVLIAVKRFQERHGLKNDGVIGTQTQQWLALNIKERIRLLAL 326 Query: 179 NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 N R++ ++VNIP+ + G+ L S VIVGR R TP++ S I + Sbjct: 327 NAQRMRLW--SVKPDTGIVVNIPSFYMNLWLEGEKVLGSKVIVGRPSRHTPMIDSDIQSV 384 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK--EVFVEEVDWNSPEPPNF 296 +FNPYW +P SI++KD+M +R++ YL ++N +I ++ + + ++ P F Sbjct: 385 VFNPYWNVPNSIMKKDIMPKVRRNRNYLANHNYEVIKGWDNAQKIAINSIPYHLLSPNRF 444 Query: 297 IF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 + RQ PGK NA+ K F + Y+HDT LF R +SGC+RV L Sbjct: 445 PYRLRQKPGKRNALGLYKFNFPNNQAIYLHDTASRSLFKKNERALSSGCIRVEQAKSLAR 504 Query: 355 WLLKDTPTWSRYHIEEVVKTRKTTPVKL--ATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LL+ + + S + + ++RKT + L VPV +Y +AW ++ +R DIY Sbjct: 505 VLLEYSGS-SEQRFDSLSRSRKTRTIVLGDNKSVPVDLIYQTAWVDDSGLVHYRSDIYQY 563 Query: 413 DN 414 D Sbjct: 564 DR 565 >gi|153829587|ref|ZP_01982254.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|229515643|ref|ZP_04405102.1| hypothetical protein VCB_003301 [Vibrio cholerae TMA 21] gi|148874921|gb|EDL73056.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|229347412|gb|EEO12372.1| hypothetical protein VCB_003301 [Vibrio cholerae TMA 21] Length = 524 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 89/322 (27%), Positives = 164/322 (50%), Gaps = 16/322 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ + L +RL + +LD + L+ +D +E +K FQ HGL P G++ Sbjct: 202 RPGDPLSHREALVQRLALV-NLDTTSILNNVAYYDTSLEKPIKQFQKMHGLQPDGVIGPQ 260 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ + V+ Sbjct: 261 TMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYWDAGREVFEAKVV 318 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-- 278 VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL ++ + +I Sbjct: 319 VGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHRMEIIRGWSDP 378 Query: 279 KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + + +DW + EP F + RQ G NA+ + K + Y+HDTP LFNN Sbjct: 379 EVIDPALIDWETVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNAS 438 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGC+RV N LL + T + L +PVH +Y + W Sbjct: 439 RAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS------TQAIALKKRIPVHIIYQTVW 492 Query: 397 SPKDSIIQFRDDIYGLDNVHVG 418 ++ ++ +RDDIY D + +G Sbjct: 493 Y-EEGVLHYRDDIYHYDALALG 513 >gi|85716085|ref|ZP_01047061.1| hypothetical protein NB311A_10915 [Nitrobacter sp. Nb-311A] gi|85697084|gb|EAQ34966.1| hypothetical protein NB311A_10915 [Nitrobacter sp. Nb-311A] Length = 783 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 102/425 (24%), Positives = 176/425 (41%), Gaps = 41/425 (9%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARV---DMGIDSDIPIIS 71 ++ +H S + + H I ++ + +DS P Sbjct: 312 LTASMMDYARQAQSGRMHWSQVTADVQYPEHPIDPEQVLTNVTTAKDSSAALDSYNPP-- 369 Query: 72 KETIAQTEKAIAFYQDILSRGGWPELPIRP---LHLG--NSSVSVQRLRERLIISGDLDP 126 E + ++ +A + S G E+ P V ++R RL ++ Sbjct: 370 HELYRELKQKLAELRK-ASEGPLIEIANGPGLVFRKNAVMEDPRVPQIRARLGMT----- 423 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNLMRIKK 185 FDA V +AV+ FQ RH L P G++ ++T+ A+N P I + VN+ R + Sbjct: 424 QNPDDTRFDADVAAAVREFQARHHLKPDGILGNNTVRALNGPKKDHTIDTIIVNMERWRW 483 Query: 186 LL----EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD-RQTPILHSRINRIMF 240 L + Y ++NIP SL+ +++G + V+VG+ TP+L + I Sbjct: 484 LPRELGAPSLDDAYAILNIPDYSLKVMQHGAQIWSTRVVVGKPGLHATPLLTETMKYITV 543 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP W +P SII K+ + L+QDP L + + ++ + + Q Sbjct: 544 NPTWNVPPSIIYKEYLPALQQDPTVLSRMGLKLERDRNGGIHIS---------------Q 588 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK-- 358 PG+ NA+ + F ++ Y HDTP+ LF+ R + GC+RV+N LL Sbjct: 589 PPGERNALGRIRFNFPNKFLVYQHDTPDKHLFSKNKRAFSHGCMRVQNPDQYAATLLNIV 648 Query: 359 -DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 ++ I + R + T VPVH Y +A+ + +Q R D+YG D + Sbjct: 649 LPQEHYTPEKI-RSMYGRNEFNINFPTPVPVHITYQTAFVDQAGKLQLRADVYGRDAKML 707 Query: 418 GIIPL 422 ++ Sbjct: 708 ALLRN 712 >gi|262402380|ref|ZP_06078941.1| hypothetical protein VOA_000347 [Vibrio sp. RC586] gi|262351162|gb|EEZ00295.1| hypothetical protein VOA_000347 [Vibrio sp. RC586] Length = 522 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 103/399 (25%), Positives = 185/399 (46%), Gaps = 28/399 (7%) Query: 27 VEKPIHASVLDEIINESYHSIVNDRFDNFL-ARVDMGIDSDIPIISKETIAQTE-KAIAF 84 + KP+ A +E + +I N D + D + + +++ TE + I Sbjct: 134 LNKPLAA-PSEEAQLALHMAIGNQTLDQLIDEYTPRDPDYQQLLHTYQSLLATESQDIPL 192 Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVK 143 Y+ LG+ L RL + D+ + +D + + +K Sbjct: 193 YEQ-----------TGLKRLGDPLTHRDALVHRLSLVNIDITEVRDDITFYDQALVNPIK 241 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 FQ HGL P G+V T++ +N + R+ L +N R++ + ++VN+P Sbjct: 242 QFQSMHGLKPDGVVGPETMKWLNKSMAERVSLLALNAERLRLWPAPQ--DTAIVVNVPGF 299 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 +++ + G+ + V+VGRV R TP+++++++ ++ NP W +PR I+ +D++ ++++D Sbjct: 300 AMKYWDAGQEVFEAKVVVGRVTRPTPVMNTKLDSLIINPTWNVPRKIMVEDILPMVKRDH 359 Query: 264 QYLKDNNIHMIDEKG--KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRN 319 +YL + + +I + V + +DW S +P F + RQ G NA+ K + Sbjct: 360 EYLAKHQMEIIRGWNDPEVVDPQLIDWASVDPETFPYRMRQQAGVQNALGMYKFNTPNSR 419 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 Y+HDTP LFNN R +SGC+RV N LL+ E KT Sbjct: 420 AIYLHDTPSKHLFNNAARAFSSGCIRVENAQKFAQTLLEQQGIVLNELPE------KTKT 473 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 + L +PVH +Y + W + +Q+RDDIY D + Sbjct: 474 IALKKRIPVHIIYQTVWY-EGGKLQYRDDIYRYDTSALS 511 >gi|229525867|ref|ZP_04415272.1| hypothetical protein VCA_003512 [Vibrio cholerae bv. albensis VL426] gi|229339448|gb|EEO04465.1| hypothetical protein VCA_003512 [Vibrio cholerae bv. albensis VL426] Length = 524 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 89/322 (27%), Positives = 164/322 (50%), Gaps = 16/322 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ + L +RL + +LD + L+ +DA +E +K FQ HGL G++ Sbjct: 202 RPGDPLSHREALVQRLALV-NLDTTSILNDVAYYDASLEKPIKQFQKMHGLQTDGVIGPQ 260 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ + V+ Sbjct: 261 TMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYWDAGREVFEAKVV 318 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-- 278 VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL ++ + +I Sbjct: 319 VGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHRMEIIRGWSDP 378 Query: 279 KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + + +DW + EP F + RQ G NA+ + K + Y+HDTP LFNN Sbjct: 379 EVIDPALIDWETVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNAS 438 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGC+RV N LL + T + L +PVH +Y + W Sbjct: 439 RAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS------TQAIALKKRIPVHIIYQTVW 492 Query: 397 SPKDSIIQFRDDIYGLDNVHVG 418 ++ ++ +RDDIY D + +G Sbjct: 493 Y-EEGVLHYRDDIYHYDALALG 513 >gi|297578860|ref|ZP_06940788.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297536454|gb|EFH75287.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 524 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 165/322 (51%), Gaps = 16/322 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ + L +RL + +LD + L+ +DA +E +K FQ HGL P G++ Sbjct: 202 RPGDPLSHREALVQRLALV-NLDTTSILNDVAYYDASLEKPIKQFQKMHGLQPDGVIGPQ 260 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ + V+ Sbjct: 261 TMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYWDAGREVFEAKVM 318 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-- 278 VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL ++ + +I Sbjct: 319 VGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHRMEIIRGWSDP 378 Query: 279 KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + + +DW + EP F + RQ G NA+ + K + Y+HDTP LFNN Sbjct: 379 EVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNAS 438 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGC+RV N LL + T + L +PVH +Y + W Sbjct: 439 RAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS------TQAIALKKRIPVHIIYQTVW 492 Query: 397 SPKDSIIQFRDDIYGLDNVHVG 418 ++ ++ +RDDIY D + +G Sbjct: 493 Y-EEGVLHYRDDIYHYDALALG 513 >gi|91792858|ref|YP_562509.1| peptidoglycan binding domain-containing protein [Shewanella denitrificans OS217] gi|91714860|gb|ABE54786.1| Peptidoglycan-binding domain 1 [Shewanella denitrificans OS217] Length = 498 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 108/363 (29%), Positives = 169/363 (46%), Gaps = 6/363 (1%) Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSV 111 D F D I S +A + + WP + P L + S+ Sbjct: 128 DEFNPLSDRQKSLAIEPKSNMYLAVMNH-VRRMLWLDENADWPVIDPQGLLRRNDGHASI 186 Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + RL + GD +ES +K FQ RHGL G++ TL +N Sbjct: 187 PAIAARLSLLGDFH-GAHQGYVLTPALESGLKAFQRRHGLKDDGVIGPKTLSWLNQLPIE 245 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 R R L VN + + Q + Y+LVNIPA + V+ G++ L S VIVG+ RQTPI+ Sbjct: 246 RARLLAVNFVEQSRYQAQ-LDDSYLLVNIPAFEMVLVDKGQIVLHSRVIVGKSYRQTPIM 304 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP 291 I+ ++ NP W +PR ++++D++ +R+D +YL + + + +G++ + +W S Sbjct: 305 SGAISNLVINPTWTVPRRLLRQDVLPHVRKDGRYLAEKQFDVFNYQGQKQLLTAEEWQSL 364 Query: 292 EPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 F ++ Q PG+ N++ K F + N Y+HDTP P LF N R +SGC+R+ + Sbjct: 365 AYTRFPYKLVQRPGEHNSLGRYKFHFNNDKNIYLHDTPTPELFANAERALSSGCIRIEKV 424 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 +L W R KT L +PVH VY +AW + + Q+R DI Sbjct: 425 AELANWFAVHRVNDKRTWRRLQSSKHKTQWFSLTHSLPVHLVYWTAWVDEHHLAQYRSDI 484 Query: 410 YGL 412 Y Sbjct: 485 YHR 487 >gi|254226414|ref|ZP_04920001.1| conserved hypothetical protein [Vibrio cholerae V51] gi|125621036|gb|EAZ49383.1| conserved hypothetical protein [Vibrio cholerae V51] Length = 524 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 164/322 (50%), Gaps = 16/322 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ + L +RL + +LD + L+ +D +E +K FQ HGL P G++ Sbjct: 202 RPGDPLSHREALVQRLALV-NLDTTSILNNVAYYDTSLEKPIKQFQKMHGLQPDGVIGPQ 260 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ + V+ Sbjct: 261 TMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYWDVGREVFEAKVV 318 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-- 278 VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL ++ + +I Sbjct: 319 VGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHRMEIIRGWSDP 378 Query: 279 KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + + +DW + +P F + RQ G NA+ + K + Y+HDTP LFNN Sbjct: 379 EVIDPALIDWETVDPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNAS 438 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGC+RV N LL + T + L +PVH +Y + W Sbjct: 439 RAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS------TQAIALKKRIPVHIIYQTVW 492 Query: 397 SPKDSIIQFRDDIYGLDNVHVG 418 ++ ++ +RDDIY D + +G Sbjct: 493 Y-EEGVLHYRDDIYHYDALALG 513 >gi|326424107|ref|NP_761768.2| L,D-transpeptidase YcbB [Vibrio vulnificus CMCP6] gi|319999488|gb|AAO11295.2| L,D-transpeptidase YcbB [Vibrio vulnificus CMCP6] Length = 535 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 102/395 (25%), Positives = 173/395 (43%), Gaps = 36/395 (9%) Query: 27 VEKPIHASVLDEIINESYHSIVNDR-FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 + I A L + + + F N +R+ D +P+ + Sbjct: 166 LSADIQAGYLATFVRSLRSPLQRHQQFANRYSRLLKARDHAVPLFHQ------------- 212 Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV-AFDAYVESAVKL 144 + L LG+ L +RL + G + +D +E AVK Sbjct: 213 -------------VGLLKLGDKLPDRANLIKRLEVVGLETSHLKRDIKYYDTQLELAVKQ 259 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL G+V TL+ +N+ R+ + +N R + E++ VLVN+P Sbjct: 260 FQKMHGLTQDGVVGPITLKWLNMTPAQRLHSMALNSERSRLWPEER--DLLVLVNVPGYE 317 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 ++ G+ S V+VGR R+TPI+ +++ ++ NP W +P++I+ KD++ ++ D Sbjct: 318 MKFWYKGEEIFESKVVVGRKSRKTPIMVGKMDGVVLNPVWNVPKTIMVKDILPKVKYDQS 377 Query: 265 YLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 +L NI +++ + V + +DW +F + RQ G NA+ K ++ Sbjct: 378 FLTKQNIEIVEGWDSQTAVNPQTIDWTKVSLKSFPYKMRQLAGDKNALGLYKFNIPNKRA 437 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 ++HDTP LF R +SGCVRV+N + LLK T + T + Sbjct: 438 IFLHDTPSKSLFQEDSRAFSSGCVRVQNADQFALQLLK-TQGLEEELSNLATRQEANTMI 496 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 L +PVH +Y + W + + +RDDIY D V Sbjct: 497 PLKRRIPVHIIYQTVWFEGE-ELNYRDDIYQYDLV 530 >gi|327483956|gb|AEA78363.1| L,D-transpeptidase YcbB [Vibrio cholerae LMA3894-4] Length = 536 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 87/322 (27%), Positives = 163/322 (50%), Gaps = 16/322 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ + L +RL + +LD + L+ +D +E +K FQ HGL G++ Sbjct: 201 RPGDPLSHREALVQRLALV-NLDTTSILNDVAYYDTSLEKPIKQFQKMHGLQTDGVIGPQ 259 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ + V+ Sbjct: 260 TMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYWDAGREVFEAKVV 317 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-- 278 VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL ++ + +I Sbjct: 318 VGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHRMEIIRGWSDP 377 Query: 279 KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + + +DW + +P F + RQ G NA+ + K + Y+HDTP LFNN Sbjct: 378 EVIDPALIDWETVDPETFPYRLRQLAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNAS 437 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGC+RV N LL + T + L +PVH +Y + W Sbjct: 438 RAFSSGCIRVENAEKFAQTLLANQGITLDDFPVS------TQAIALKKRIPVHIIYQTVW 491 Query: 397 SPKDSIIQFRDDIYGLDNVHVG 418 ++ ++ +RDDIY D + +G Sbjct: 492 Y-EEGVLHYRDDIYHYDALALG 512 >gi|320156749|ref|YP_004189128.1| L,D-transpeptidase YcbB [Vibrio vulnificus MO6-24/O] gi|319932061|gb|ADV86925.1| L,D-transpeptidase YcbB [Vibrio vulnificus MO6-24/O] Length = 518 Score = 368 bits (945), Expect = e-99, Method: Composition-based stats. Identities = 102/395 (25%), Positives = 173/395 (43%), Gaps = 36/395 (9%) Query: 27 VEKPIHASVLDEIINESYHSIVNDR-FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 + I A L + + + F N +R+ D +P+ + Sbjct: 149 LSADIQAGYLATFVRSLRSPLQRHQQFANRYSRLLKARDHAVPLFHQ------------- 195 Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV-AFDAYVESAVKL 144 + L LG+ L +RL + G + +D +E AVK Sbjct: 196 -------------VGLLKLGDKLPDRANLIKRLEVVGLETSHLKRDIKYYDTQLELAVKQ 242 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL G+V TL+ +N+ R+ + +N R + E++ VLVN+P Sbjct: 243 FQKMHGLTQDGVVGPITLKWLNMTPAQRLHSMALNSERSRLWPEER--DLLVLVNVPGYE 300 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 ++ G+ S V+VGR R+TPI+ +++ ++ NP W +P++I+ KD++ ++ D Sbjct: 301 MKFWYKGEEIFESKVVVGRKSRKTPIMVGKMDGVVLNPVWNVPKTIMVKDILPKVKYDQS 360 Query: 265 YLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 +L NI +++ + V + +DW +F + RQ G NA+ K ++ Sbjct: 361 FLTKQNIEIVEGWDSQTAVNPQTIDWTKVSLKSFPYKMRQLAGDKNALGLYKFNIPNKRA 420 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 ++HDTP LF R +SGCVRV+N + LLK T + T + Sbjct: 421 IFLHDTPSKSLFQEDSRAFSSGCVRVQNADQFALQLLK-TQGLEEELSNLATRQEANTMI 479 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 L +PVH +Y + W + + +RDDIY D V Sbjct: 480 PLKRRIPVHIIYQTVWFEGE-ELNYRDDIYQYDLV 513 >gi|89092899|ref|ZP_01165851.1| hypothetical protein MED92_10574 [Oceanospirillum sp. MED92] gi|89082924|gb|EAR62144.1| hypothetical protein MED92_10574 [Oceanospirillum sp. MED92] Length = 411 Score = 368 bits (945), Expect = e-99, Method: Composition-based stats. Identities = 101/370 (27%), Positives = 173/370 (46%), Gaps = 12/370 (3%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISG 122 ++ P ++ I E+ + + WP L + L G+ S + +LR RL++ G Sbjct: 45 ETPEPQGIEKQILALEEHKIRLEQLSLANQWPSLLKTKLLRFGDESTVIPKLRTRLMLLG 104 Query: 123 DLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 DLD + F + +A+ FQ RHGL G+ +T +NV R Q+ VN Sbjct: 105 DLDELVHCELDDPLFGIDLHNALIKFQKRHGLKADGIYGPATRRELNVSPSSRALQITVN 164 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 + R+K + RY+ VNIP L E+G L IVG+ R+TP+ ++ +NR++ Sbjct: 165 IDRLKSFNP--VSDRYIQVNIPEYRLRLFEHGAEILSMKTIVGKKKRKTPVFNTTVNRLV 222 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV---EEVDWNS-PEPPN 295 NP W +P+SI KD++ L DP+YLK N+ ++ G + ++VD + + N Sbjct: 223 INPSWHVPKSIAYKDIVPELESDPEYLKKMNLKLVTGWGNSKTILSQDQVDLDKLYKGEN 282 Query: 296 F-IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 + F + P + S K + Y+HDT LF R +SGC+RV L Sbjct: 283 YQRFWEPPSNNGTLGSVKFLTTGPYSVYLHDTSAKRLFEKETRAFSSGCIRVEKPRSLAN 342 Query: 355 WLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 L++ T W + ++ + + + + +H Y +A+ ++ + FR D+Y D Sbjct: 343 ELMRMTHGWEKEKLDTYFNDTERKTINMPDTIDLHVTYWTAFIDENG-LNFRRDLYKKDR 401 Query: 415 VHVGIIPLPE 424 + + E Sbjct: 402 WEIAQLKQTE 411 >gi|37680299|ref|NP_934908.1| hypothetical protein VV2115 [Vibrio vulnificus YJ016] gi|37199046|dbj|BAC94879.1| uncharacterized protein conserved in bacteria [Vibrio vulnificus YJ016] Length = 535 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 103/395 (26%), Positives = 173/395 (43%), Gaps = 36/395 (9%) Query: 27 VEKPIHASVLDEIINESYHSIVNDR-FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 + I A L + + + F N +R+ D +P+ + Sbjct: 166 LSADIQAGYLATFVRSLRSPLQRHQQFANRYSRLLKARDHAVPLFHQ------------- 212 Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV-AFDAYVESAVKL 144 + L LG+ L +RL + G + +D +E AVK Sbjct: 213 -------------VGLLKLGDKLPDRANLIKRLEVVGLETSHLKRDIKYYDTQLELAVKQ 259 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 FQ HGL G+V TL+ +N+ R+ + +N R + E++ VLVN+P Sbjct: 260 FQKMHGLTQDGVVGPITLKWLNMTPAQRLHSMALNSERSRLWPEER--DLLVLVNVPGYE 317 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 ++ G+ S V+VGR R+TPI+ +++ ++ NP W +P++I+ KD++ ++ D Sbjct: 318 MKFWYKGEEIFESKVVVGRKSRKTPIMVGKMDGVVLNPVWNVPKTIMVKDILPKVKYDQS 377 Query: 265 YLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNN 320 +L NI +I+ + V + +DW +F + RQ G NA+ K ++ Sbjct: 378 FLTKQNIEIIEGWDSQTAVNPQTIDWTKVSLKSFPYKMRQLAGDKNALGLYKFNIPNKRA 437 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 ++HDTP LF R +SGCVRV+N + LLK T + T + Sbjct: 438 IFLHDTPSQSLFQEDSRAFSSGCVRVQNADQFALQLLK-TQGLEEELSNLATRQEANTMI 496 Query: 381 KLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 L +PVH +Y + W + + +RDDIY D V Sbjct: 497 PLKRRIPVHIIYQTVWFEGE-ELNYRDDIYQYDLV 530 >gi|46202780|ref|ZP_00052619.2| COG2989: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 465 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 112/363 (30%), Positives = 171/363 (47%), Gaps = 9/363 (2%) Query: 16 VYLILPMGLSLVEKPI-HASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET 74 +L G L + A L E+ RF LA + I +IS + Sbjct: 101 SAALLRFGRDLSVGAVLPARNLGGFGAETRGEFDGARFLKALAEGKPLTEQ-IDVISPQY 159 Query: 75 --IAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + + + I + GGWP +P L G++ V LR RLI SGDL Sbjct: 160 VGYMRLRDGLEKARAIAAAGGWPSIPDGAKLVPGDTDDRVPVLRRRLIASGDLGDGLAEG 219 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 +DA + AVK FQ+RHGL+P + TL +NVP D R RQ+ VN+ R + + Sbjct: 220 RTYDAPLAEAVKRFQLRHGLEPDATIGGKTLAHLNVPADARARQIAVNMERWR-WMPHSF 278 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G ++ VNI A +E VE+G V + V+VG V TP + + ++ ++ NP W +P SI Sbjct: 279 GRHHIAVNIAAQQMEVVEDGAVAMSMRVVVGDVKHPTPSMSTTMSSVVLNPAWRVPTSIA 338 Query: 252 QKDMMALLRQDPQYLKDNNIHMID--EKGKEVFVEEVDWNSP-EPPNFIFRQDPGKINAM 308 K+++ LR+DP YL + + ++D E E + VDWN+ + + RQ PG NA+ Sbjct: 339 NKEILPKLRKDPNYLTSSKLQIVDYPEGSPESAGDGVDWNAIGKKFPYRLRQPPGPDNAL 398 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K ++ YMHDT + R + GCVR+ ++L +L + I Sbjct: 399 GQLKFNLTDSDDIYMHDTNNRRVXGRSYRALSHGCVRLERPVELGDVMLGPRRKDNWRKI 458 Query: 369 EEV 371 E + Sbjct: 459 EAI 461 >gi|54309518|ref|YP_130538.1| hypothetical protein PBPRA2351 [Photobacterium profundum SS9] gi|46913954|emb|CAG20736.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 572 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 103/337 (30%), Positives = 160/337 (47%), Gaps = 14/337 (4%) Query: 94 WPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVA------FDAYVESAVKLFQ 146 WP + + LG+ L L GD+ + + VK FQ Sbjct: 227 WPGFYQQGIIRLGDRLKDPDSLITILERMGDITEYDADRMRTSQLRSLTIPLSLGVKTFQ 286 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 RHGL G++ T + + RIR L +N R++ + + ++VNIP L Sbjct: 287 KRHGLKVDGVIGPKTRYWLAITPKERIRVLALNAQRVRLWPAEYNSV--LIVNIPGYELN 344 Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 + K S VIVGR R+TP++ SR+N ++FNPYW +P+SI++KD++ R+D YL Sbjct: 345 LWLDNKHVFDSKVIVGRPSRRTPLISSRVNSVVFNPYWNVPKSIMRKDILPKARRDRSYL 404 Query: 267 KDNNIHMIDEKGK--EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTY 322 +N +I ++ + + + F + RQ PG NA+ K + N+ Y Sbjct: 405 YRHNYAVIRSWNSSEQIPIHTIHPSMLYAKTFPYRLRQKPGNKNALGLYKFIIPNDNSIY 464 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL 382 +HDTP LFN R +SGCVRV N L + LL + + E+ ++T + L Sbjct: 465 LHDTPAKSLFNKDDRAFSSGCVRVENADVLALILLNYS-GVTDQRFYELSGRKQTKTIGL 523 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGI 419 +V VH +Y +AW ++ FRDD+Y D V G Sbjct: 524 RNKVKVHLIYQTAWVDDGGLVNFRDDVYLYDKVGGGS 560 >gi|90414498|ref|ZP_01222473.1| hypothetical protein P3TCK_00890 [Photobacterium profundum 3TCK] gi|90324406|gb|EAS40968.1| hypothetical protein P3TCK_00890 [Photobacterium profundum 3TCK] Length = 572 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 111/393 (28%), Positives = 174/393 (44%), Gaps = 28/393 (7%) Query: 40 INESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGG--WPEL 97 +I N+R F+ + D+ K I Q + + WP Sbjct: 183 TGRLLDAIDNNRMRYFVTSLKPVNDNY------------NKMILAMQALEASESEHWPGF 230 Query: 98 PIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLS------VAFDAYVESAVKLFQMRHG 150 + + LG + L L GD+ + VK FQ RHG Sbjct: 231 YQQGIIRLGGRLNNPDSLITILERMGDITEYDADRMRASQLRTLTIPLSLGVKTFQKRHG 290 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L G++ T + + RIR L +N R++ + + ++VNIP L + Sbjct: 291 LKVDGVIGPKTRYWLAITPKERIRVLALNAQRVRLWPAEHNSV--LIVNIPGYDLNLWLD 348 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 K S VIVGR R+TP++ SR+N ++FNPYW +P+SI++KD++ R+D YL +N Sbjct: 349 NKHVFDSKVIVGRPSRRTPLISSRVNSVVFNPYWNVPKSIMRKDILPKARRDRSYLYRHN 408 Query: 271 IHMIDEKGK--EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDT 326 +I ++ + + + F + RQ PG NA+ K + ++ Y+HDT Sbjct: 409 YAVIRSWNSSEQIPIHTIHPSMLYAKTFPYRLRQKPGNKNALGLYKFNIPNDDSIYLHDT 468 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P LFN R +SGCVRV N L + LL + + E+ +KT + L +V Sbjct: 469 PAKSLFNKDDRAFSSGCVRVENADVLALILLNYS-GVTEQRFYELSGRKKTKTIGLRNKV 527 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGI 419 VH +Y +AW ++ FRDD+Y D V G Sbjct: 528 QVHLIYQTAWVDDGGLVNFRDDVYLYDKVGDGS 560 >gi|260776045|ref|ZP_05884940.1| hypothetical protein VIC_001429 [Vibrio coralliilyticus ATCC BAA-450] gi|260607268|gb|EEX33533.1| hypothetical protein VIC_001429 [Vibrio coralliilyticus ATCC BAA-450] Length = 517 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 97/330 (29%), Positives = 167/330 (50%), Gaps = 11/330 (3%) Query: 95 PELPIRPLH-LGNSSVSVQRLRERL-IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ R L +G+ + + L R+ ++ DL + +D +E+AVK FQ HGL Sbjct: 191 PKYTQRGLRQVGDKLKNREVLLVRMEMVDVDLSDVRRDVNWYDVTLETAVKQFQRLHGLT 250 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G++ T+ +N+ R+ L +N R + ++ ++VN+P ++ +G+ Sbjct: 251 DDGIIGPDTIRWLNISPSERLSILALNAERGRLWPIER--DTIIVVNVPGFEMKYWYSGQ 308 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 S V+VGR R TP++ ++++ ++ NP W +P I+ +D++ +++DP+YL NI Sbjct: 309 EVFESKVVVGRKGRPTPMMTTKLDSLILNPTWNVPWKIMVEDIIPKVKEDPEYLVRQNIT 368 Query: 273 MIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPE 328 ++ + G + + E++DW + P F +R Q G NA+ K +R Y+HDTP Sbjct: 369 IVPKWGSKELINPEDIDWQNMRPSAFPYRMTQLSGNNNALGLYKFNTPNRRAIYLHDTPS 428 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF+ R +SGC+RV + LL+ EE + K + L VPV Sbjct: 429 KNLFDEASRAFSSGCIRVEHADQFATRLLESQGLDMSTLDEEELAANK--SIPLKQRVPV 486 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 H +Y +AWS + I +RDDIY D G Sbjct: 487 HIIYQTAWS-EGGKIHYRDDIYRWDRFSYG 515 >gi|327189298|gb|EGE56466.1| hypothetical protein RHECNPAF_642003 [Rhizobium etli CNPAF512] Length = 653 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 102/389 (26%), Positives = 168/389 (43%), Gaps = 26/389 (6%) Query: 55 FLARVDMGIDSDIPIISKE--TIAQTEKAIAFYQDILSRGGWPELPI---RPLHLGNSSV 109 LAR+ + + S + + +A + G ++ I + L G+SS Sbjct: 269 KLARMSPDAGAYLTSRSPDGPQFEALKAELAKLRA-ADGGNEEQIVISLDKLLRPGDSSP 327 Query: 110 SVQRLRERLIISG----------DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 V + + L G L G S + + + V+ FQ GL G++ Sbjct: 328 EVANIVKALAKHGSETLKTNHAATLASYTGGSD-YSPEIVALVEDFQKERGLKADGVIGQ 386 Query: 160 STLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 +T+ AM +I +L V + + + L + +G RYV++N PA +GK L Sbjct: 387 ATVRAMTGGDTNASKIDKLVVAMEQAR-WLPEDLGSRYVMINQPAYMAYYHNDGKEQLSM 445 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V+VG + QT I + FNP+W +P+SII +M+ LR DP YL + + Sbjct: 446 RVVVGGKNNQTYFFDDEIETVEFNPFWGVPQSIIINEMLPKLRSDPNYLDQLGYEV-EVN 504 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 G V VDW N RQ P NA+ KI F + + YMHDTP F +R Sbjct: 505 GHAVASSSVDWYG-STDNVSVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDMR 563 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 + GCVR+ N + +L + + + + + + V++ ++PV+ Y +AW Sbjct: 564 ALSHGCVRLSNPRAMAAAVLGT----TVDDVAKQIASGQNHAVRVPQKIPVYVSYFTAWP 619 Query: 398 PKDSIIQFRDDIYGLDNVHVGIIPLPEDH 426 KD ++++ DD+YG D Sbjct: 620 NKDGVVEYFDDVYGRDAYVEKAFDATTKA 648 >gi|261211004|ref|ZP_05925294.1| hypothetical protein VCJ_001260 [Vibrio sp. RC341] gi|260839979|gb|EEX66579.1| hypothetical protein VCJ_001260 [Vibrio sp. RC341] Length = 522 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 92/321 (28%), Positives = 162/321 (50%), Gaps = 14/321 (4%) Query: 103 HLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G+S L RL + D+ + +D + A+K FQ HGL G++ T Sbjct: 200 REGDSLTHRDALLRRLSLVNLDITDVREDVAFYDQSLVKAIKQFQSMHGLKTDGVIGPET 259 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 ++ +N V R+ L +N R++ Q ++VN+P ++ + G+ + V+V Sbjct: 260 IKWLNKSVTERVTLLALNAERLRLW--QTPQDTVIVVNVPGFDMKYWDAGREVFEAKVVV 317 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--K 279 GRV R TP+++++++ ++ NP W +PR I+ +D++ ++++D QYL ++ I +I + Sbjct: 318 GRVTRPTPVMNTKLDSLIINPTWNVPRKIMVEDILPMVKRDHQYLAEHQIEIIRGWSDPE 377 Query: 280 EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 V +E+DW + +P F + RQ G NA+ K + Y+HDTP LFNN R Sbjct: 378 VVDPQEIDWATVDPETFPYRLRQQAGVQNALGMYKFNTPNSRAIYLHDTPSKHLFNNAAR 437 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGC+RV N LL D + + T + L +PV +Y + W Sbjct: 438 AFSSGCIRVENAQKFAQALL-DQQGIVLNDVPDT-----TKTIALKKRIPVQIIYQTVWY 491 Query: 398 PKDSIIQFRDDIYGLDNVHVG 418 + ++ +RDDIY D++ +G Sbjct: 492 -EGGVLNYRDDIYRYDSLALG 511 >gi|330809814|ref|YP_004354276.1| hypothetical protein PSEBR_a2969 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377922|gb|AEA69272.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 520 Score = 366 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 105/371 (28%), Positives = 170/371 (45%), Gaps = 11/371 (2%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQR 113 L V + P + + A + W +P PL V Sbjct: 158 GLQNVASAFEQARPNL--DLYRNLRGLYARLRQ-QPLSDWQPVPGGPLLQPDKQDARVPA 214 Query: 114 LRERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 L +RL G L P + + A+K FQ++H L G+V T+ +N+ +R Sbjct: 215 LAQRLFNEGYLSTPPLVTDEHYSPTLVEAMKSFQLQHSLQADGVVGPWTVTELNISPAMR 274 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 QL++NL R++ L Q + VLVN+ AA L G+ ++ VGR RQTP+L Sbjct: 275 REQLRINLERMR-WLAQDVENDSVLVNVAAAQLTVYRGGEPIWQTRTQVGRAQRQTPLLK 333 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 S + R+ NP W IP +I+++D + +R+DP++L +N+ ++D +G + E++DW Sbjct: 334 SHVTRLTLNPTWTIPPTIMREDKLPEIRRDPEFLARHNLRILDSEGLPLMAEDIDWE--H 391 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 P N + RQDPG N + I F + + Y+HDTP LF+ R +SGCVR+ ++ L Sbjct: 392 PGNLMLRQDPGPKNPLGKMAIRFPNPFSVYLHDTPSQALFSKGPRAFSSGCVRIEQVMHL 451 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 L+ R + ++ + T +LA VP+ Y +A + + DIY Sbjct: 452 RDLLVSPA---ERARTDTLLASETTHEFRLARPVPILLGYWTAQADSQGQPLYIPDIYAR 508 Query: 413 DNVHVGIIPLP 423 D Sbjct: 509 DATLSAAQGRA 519 >gi|261253179|ref|ZP_05945752.1| hypothetical protein VIA_003204 [Vibrio orientalis CIP 102891] gi|260936570|gb|EEX92559.1| hypothetical protein VIA_003204 [Vibrio orientalis CIP 102891] Length = 517 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 95/318 (29%), Positives = 168/318 (52%), Gaps = 10/318 (3%) Query: 103 HLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +G+ + L +RL I DL + FD ++ AVK FQ HGL P G++ T Sbjct: 200 RVGDRLENRDVLIQRLSIVDVDLIDVRKDIRWFDQTLKVAVKQFQNLHGLKPDGIIGPET 259 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 ++ +N+P++ R+ L +N RI+ Q+ ++VN+P+ + +G+ S V+V Sbjct: 260 IKWINLPIEKRLSTLAINAERIRYWPSQR--DTIIVVNVPSFQMTYWSSGEEVFESKVVV 317 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE- 280 G+++R TP++ R++ ++ NP W +P I+ +D++ ++ D YL NI +I + G + Sbjct: 318 GKIERPTPLMQIRLDSLILNPTWNVPWKIMVEDIIPKVQHDRAYLTKQNIKIIPKWGSDE 377 Query: 281 -VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 + E +DW++ P +F +R Q+ G NA+ K +R ++HDTP LF+ R Sbjct: 378 IINPETIDWDNLNPSSFPYRMTQESGNSNALGLYKFNTPNRRAIFLHDTPSKSLFSRQQR 437 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGC+RV N L++ R ++E + L + VPVH +Y +AW Sbjct: 438 AFSSGCIRVENADVFAKRLIEAQGVSRRAKLDE--PPGPNQSIPLKSRVPVHIIYQTAWY 495 Query: 398 PKDSIIQFRDDIYGLDNV 415 ++ + +R+DIY LD Sbjct: 496 -EEGSVHYREDIYRLDKA 512 >gi|75675184|ref|YP_317605.1| hypothetical protein Nwi_0991 [Nitrobacter winogradskyi Nb-255] gi|74420054|gb|ABA04253.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255] Length = 811 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 98/425 (23%), Positives = 173/425 (40%), Gaps = 41/425 (9%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARV---DMGIDSDIPIIS 71 ++ +H + + I H + ++ + +DS P Sbjct: 339 LTASMMDYARQAQSGRMHWTQVSADIQYPEHPVDPEQVLTNVTTAKDSSAALDSYNPP-- 396 Query: 72 KETIAQTEKAIAFYQDILSRGGWPELPIRP---LHLGN--SSVSVQRLRERLIISGDLDP 126 + ++ +A + S G E+ P V ++R RL ++ Sbjct: 397 HKLFQALKRKLAELRK-DSEGPVIEIAEGPGLVFRKNAVIEDPRVPQIRARLGVT----- 450 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNLMRIKK 185 FDA V +AV+ FQ RH L P G++ ++T+ A+N P I + N+ R + Sbjct: 451 QNPDDTRFDADVAAAVREFQARHHLKPDGILGNNTIRALNGPKKDHTIDTIIANMERWRW 510 Query: 186 LL----EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD-RQTPILHSRINRIMF 240 L +G Y ++NIP SL+ +++G + V+VG+ TP+L + I Sbjct: 511 LPRELGAPSLGDAYAILNIPDYSLKVMQHGAPIWSTRVVVGKPGLHATPLLTETMKYITV 570 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP W +P SII K+ + L+QDP L + + ++ + + Q Sbjct: 571 NPTWNVPPSIIYKEYLPALQQDPTVLSRMGLKLERDRNGGIHIS---------------Q 615 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK-- 358 PG+ NA+ + F ++ Y HDTP+ LF R + GC+RV+N LL Sbjct: 616 PPGERNALGRIRFNFPNKFLVYQHDTPDKHLFAKEKRAFSHGCMRVQNPDQYAATLLNIV 675 Query: 359 -DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 ++ + + R + T PVH Y +A+ + +Q R D+YG D + Sbjct: 676 LPQEHYTPEKV-RSMYGRNEFNINFPTPFPVHITYQTAFVDQAGKLQLRGDVYGRDAKML 734 Query: 418 GIIPL 422 ++ Sbjct: 735 TLLRN 739 >gi|288941918|ref|YP_003444158.1| ErfK/YbiS/YcfS/YnhG family protein [Allochromatium vinosum DSM 180] gi|288897290|gb|ADC63126.1| ErfK/YbiS/YcfS/YnhG family protein [Allochromatium vinosum DSM 180] Length = 557 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 105/352 (29%), Positives = 168/352 (47%), Gaps = 18/352 (5%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGL-SV 132 ++A++ Y LP L LG+ V +LRERL + G + + Sbjct: 184 YQDLKRALSHYAGARQLKALEPLPGGSVLSLGSRGERVAQLRERLRLLGYSERTPPDRPE 243 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL-RIRQLQVNLMRIKKLLEQKM 191 FDA + AV+ FQ HGL G V TL +N PVD RI ++++NL R++ L + + Sbjct: 244 TFDAALSEAVRAFQRGHGLGADGAVGPQTLAVINDPVDESRIERIRINLERMR-WLYEDL 302 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 YV V++ V ++ + VIVG+ D QTP+ R++ ++ NP W +P SI Sbjct: 303 PPDYVFVDVADYMAHLVRGREIAWSTRVIVGKEDSQTPMFRDRLDHLVLNPTWTMPVSI- 361 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 ++ + D I + G+ V N+ + + Q PG NA+ Sbjct: 362 --------QKTFTKVSDKYILIDRRTGRRVSGG----NATDYKRYRVVQQPGPDNALGRV 409 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 K F +R+ YMHDTP LF R + GCVRV+N + LL+++ +W R I+ V Sbjct: 410 KFMFPNRHAVYMHDTPSKALFGRSARALSHGCVRVQNPMKFAELLLEES-SWDRARIDSV 468 Query: 372 VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 ++ KT V L+ +PV Y++A + + ++ R D+YG D + P Sbjct: 469 LEGAKTRYVNLSEPLPVLLYYLTARADAEGNLRVRRDVYGRDPAVAEALDQP 520 >gi|332141802|ref|YP_004427540.1| putative periplasmic protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327551824|gb|AEA98542.1| putative periplasmic protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 462 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 107/380 (28%), Positives = 170/380 (44%), Gaps = 32/380 (8%) Query: 74 TIAQTEKAIAFYQDILSRGGWPEL----------------PIRPLHLGNSSVSVQRLRER 117 + Q + A AFY I +GGW L P++ + ++ L R Sbjct: 80 QLKQMKSAYAFYSSIAQQGGWKALNEDLLLKNGALRKAAADETPIYSEEQAQAITALISR 139 Query: 118 LII---------SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L + L F+ VE+AVK FQ RHGL G+V TL A+NV Sbjct: 140 LGREYPSINTNCTHALTAVNSAPCVFNKDVENAVKDFQRRHGLLVDGVVGRKTLAALNVT 199 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + +QL +N+ R++ + E+K YVLVNIP L + NGKV V+VG+ T Sbjct: 200 AKKKAQQLALNITRLE-MFEEKDSDAYVLVNIPEFRLRYISNGKVKATKDVVVGKPSWAT 258 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK---GKEVFVEE 285 P I + + NP W IP SI K++ + +P YL++NNI + + + V Sbjct: 259 PSFSDHIEKFVVNPEWRIPISIATKEIAPKVADNPNYLEENNIVIRKDSFVDDELVDPNT 318 Query: 286 VDWNSPEPPNF--IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 +DW +P F + P + N + K F +R+ Y+HDTP F R + GC Sbjct: 319 IDWEDMKPYQFDHFLVKLPNEKNPLGKVKYLFPNRHAVYVHDTPYQQWFKETNRAASHGC 378 Query: 344 VRVRNIIDLDVWLLKDTPTWS-RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 +R+ + L + ++ S ++ + ++ L +P+H VY +AW+ ++ Sbjct: 379 IRLEDPFSLAQLIAEEQGVDSLMDNVISARELSQSKTFHLEEPLPIHLVYWTAWADENGK 438 Query: 403 IQFRDDIYGLDNVHVGIIPL 422 FR+DIY D + Sbjct: 439 ANFRNDIYQRDRRDAEALTQ 458 >gi|260768291|ref|ZP_05877225.1| hypothetical protein VFA_001342 [Vibrio furnissii CIP 102972] gi|260616321|gb|EEX41506.1| hypothetical protein VFA_001342 [Vibrio furnissii CIP 102972] Length = 517 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 96/358 (26%), Positives = 164/358 (45%), Gaps = 12/358 (3%) Query: 63 IDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG 122 ID P Q A + I + + R G+ + L +RL + Sbjct: 162 IDEYTP--QDAAYRQLVNAYRYLSQIEPQMLSVYVQARLKRPGDKLEDRRTLIQRLSLVN 219 Query: 123 -DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 D+ +D + VK FQ HGL G++ TL+ +N+ V R+ L +N Sbjct: 220 IDVAGISDNVTWYDNSLVEPVKQFQKMHGLKIDGIIGPDTLKWLNMKVPERLALLALNAE 279 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R++ Q ++VN+P +L+ +GK S V+VGRV R TP++ ++++ ++ N Sbjct: 280 RMRLWTTQD--DTVIVVNVPGYNLKYWYSGKPVFESKVVVGRVTRPTPVMSTKLDSLILN 337 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEEVDWNSPEPPNFIF- 298 P W +P I+ +D++ + ++D YL ++I +I+ + + +DW + P F + Sbjct: 338 PTWNVPHKIMVEDILPMTKRDASYLSRHHIDIIESWKSDQTLDPALIDWQNVNPKTFPYR 397 Query: 299 -RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 RQ G NA+ K ++ Y+HDTP LFN+ R +SGC+RV + LL Sbjct: 398 MRQQAGNQNALGLYKFNTPNKRAIYLHDTPSKHLFNHPTRAFSSGCIRVEHADQFATTLL 457 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + I + L +PVH +Y + W + + +RDDIY LD + Sbjct: 458 ETQGINDSELIPNPDAA--NRAIPLKKRIPVHIIYQTVWY-EGGEVHYRDDIYRLDRI 512 >gi|209549608|ref|YP_002281525.1| peptidoglycan-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535364|gb|ACI55299.1| Peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 636 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 101/388 (26%), Positives = 169/388 (43%), Gaps = 24/388 (6%) Query: 55 FLARVDMGIDSDIPIISKE--TIAQTEKAIAFYQDILSRGGWPELPI---RPLHLGNSSV 109 LAR+ + + I S + + +A + + G + + + L G+SS Sbjct: 252 KLARMSPDVGAYIASRSPDGAQFEALKAELAKLRA-VDGGNEERIVVSLDKSLKPGDSSP 310 Query: 110 SVQRLRERLIISGDLD---------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + + + + G + S + + S V+ FQ GL G++ + Sbjct: 311 EIANIVKAIGKHGSETLKTDHAATLAAYAGSTDYSPDIVSLVEAFQQERGLKADGVIGQA 370 Query: 161 TLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 T+ AM +I +L V + + + L + +G RYV++N PA + +GK L Sbjct: 371 TVRAMTGGDTNASKIDKLVVAMEQAR-WLPEDLGSRYVMINQPAFMVYYHNDGKEQLSMR 429 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 V+VG + QT I + FNP+W +P+SII +M+ LR DP YL + + G Sbjct: 430 VVVGGKNNQTYFFDDEIETVEFNPFWGVPQSIIINEMLPKLRSDPNYLDQLGYEV-EVNG 488 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 V VDW N RQ P NA+ KI F + + YMHDTP F +R Sbjct: 489 HAVASSSVDWYG-STNNVSVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDMRA 547 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 + GCVR+ N + +L + + + + T + VK+ ++PV+ Y +AW Sbjct: 548 LSHGCVRLANPRAMAAAVLGT----TVDDVAKQIATGQNHAVKVPQKIPVYVSYFTAWPN 603 Query: 399 KDSIIQFRDDIYGLDNVHVGIIPLPEDH 426 KD ++++ DD+YG D Sbjct: 604 KDGVVEYFDDVYGRDGYVDKAFDATTKA 631 >gi|86357997|ref|YP_469889.1| hypothetical protein RHE_CH02382 [Rhizobium etli CFN 42] gi|86282099|gb|ABC91162.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 633 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 103/386 (26%), Positives = 167/386 (43%), Gaps = 21/386 (5%) Query: 55 FLARVDMGIDSDIPIISKE--TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSV 111 LAR+ + I S + + +A + S + + L G SS + Sbjct: 250 KLARMSPNAGAYIASRSPDSPQFEALKAELAKLRAADSNEEQIVISLQGLLKPGESSSEI 309 Query: 112 QRLRERLIISGDLD---------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + + L G + S + + S V+ FQ HGL P G++ +T+ Sbjct: 310 ANIVKALQKHGSETLKTDHAATFAAYAGSSDYSPDIVSLVEDFQKEHGLKPDGVIGQATV 369 Query: 163 EAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 AM +I +L V + +++ L + +G RYV++N PA +GK L V+ Sbjct: 370 RAMTGGDTNTSKIDKLVVAMEQVR-WLPEDLGSRYVMINQPAYMAYYHNDGKEQLSMRVV 428 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VG + QT + I + FNP+W +P+SII +M+ LR DP YL + + G Sbjct: 429 VGGKNNQTYFFNDEIETVEFNPFWGVPQSIIINEMLPKLRSDPNYLDQLGYEV-EVNGHA 487 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 V VDW N RQ P NA+ KI F + + YMHDTP F +R + Sbjct: 488 VASSSVDWYGSTA-NVSVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDMRALS 546 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKD 400 GCVR+ N + +L + + + + + VK+ ++PV+ Y +AW KD Sbjct: 547 HGCVRLANPRAMAAAVLGT----TADDVARQIASGQNHAVKVPQKIPVYVSYFTAWPNKD 602 Query: 401 SIIQFRDDIYGLDNVHVGIIPLPEDH 426 ++++ DD+YG D Sbjct: 603 GVVEYFDDVYGRDAYVDKAFDATTKA 628 >gi|149191672|ref|ZP_01869915.1| hypothetical protein VSAK1_04600 [Vibrio shilonii AK1] gi|148834513|gb|EDL51507.1| hypothetical protein VSAK1_04600 [Vibrio shilonii AK1] Length = 548 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 95/339 (28%), Positives = 168/339 (49%), Gaps = 17/339 (5%) Query: 85 YQDILSRGGWPELPIRPL---HLGNSSV--SVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 Y D++S+ ++ + + LG++ + L ERL S ++ + FD ++ Sbjct: 205 YIDLVSKSQMTKIEYQQVGLTRLGDTLPQEAYLTLIERLSES-NVFITAREDRYFDELLD 263 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 A++ FQ +GL+ G++ +T+E +N ++R L +N R + +Q+ ++VN Sbjct: 264 LAIREFQTIYGLNDDGIIGPNTIEWLNKSASDKLRILALNSERSRLWPQQR--ENIIVVN 321 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 +P LE + G+ S VIVGR RQTP+L ++++ ++ NP W +P I+ KD++ + Sbjct: 322 VPNFQLEYWDEGEERFESRVIVGRASRQTPLLETKMDSLILNPTWNVPWKIMVKDIIPKV 381 Query: 260 RQDPQYLKDNNIHMIDEKGK--EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEF 315 +Q+P YL I +++ + +DW F + RQ G++NA+ K Sbjct: 382 KQNPTYLFSQRIEILEGWNNQARIDPTMIDWQEVNARRFPYRMRQQAGELNALGQYKFNT 441 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 + ++HDTP LF+ +R +SGCVRV + LL+ +E+V R Sbjct: 442 PNAQAIFLHDTPSKHLFDESLRAFSSGCVRVEHADQFAQVLLEAQGK----TLEDVATDR 497 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + L +PVH +Y +AW D FR D+Y D Sbjct: 498 PNKAIALKQRIPVHIIYQTAWM-SDGKAHFRGDVYQYDA 535 >gi|146299088|ref|YP_001193679.1| hypothetical protein Fjoh_1328 [Flavobacterium johnsoniae UW101] gi|146153506|gb|ABQ04360.1| Uncharacterized protein [Flavobacterium johnsoniae UW101] Length = 539 Score = 366 bits (939), Expect = 6e-99, Method: Composition-based stats. Identities = 106/353 (30%), Positives = 170/353 (48%), Gaps = 27/353 (7%) Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-----RPLHLGNSSVSVQRLRERLIISGDLDPSK 128 + + + Y++I G W ++ I + L +S VQ++RERL + GDL Sbjct: 200 QYYKLQNVLQRYRNIEKNGLWKKIEIDEANYKELKPLDSGKVVQQIRERLFVVGDLK-ED 258 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 S +D + AV ++ R+GL + ++ MN P+ RIR + +N+ R + + Sbjct: 259 SKSQYYDQEMMDAVLKYKKRYGLKLNYTFTKEQIDQMNEPISNRIRTIMLNMERCRWIPT 318 Query: 189 Q-KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + YV+VNIP+ L V++GK L S V VG +T I I+RI+F+PYW +P Sbjct: 319 KLAKADEYVMVNIPSFRLIYVKDGKYDLVSDVFVGTRMTETVIFSGNIDRIVFSPYWYVP 378 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SII+ ++ + +D YL D+N+ WN RQ PG N+ Sbjct: 379 ASIIKNELKLKMAEDKNYLADHNME---------------WNGGS-----VRQKPGPNNS 418 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K F + N+ Y+HDTP LF+ R + GC+ VR+ L + +LKD P W Sbjct: 419 LGLVKFMFPNPNDIYLHDTPAKSLFDFEKRTFSHGCINVRDAKKLALEILKDNPDWPVDK 478 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 I + + K T L ++P++ Y +AW D I F D+Y D ++ Sbjct: 479 INDAMSGEKETTCMLKNKIPIYIGYFTAWVTDDGEIGFYPDVYDRDKQLDKLL 531 >gi|254507080|ref|ZP_05119218.1| cell wall degradation protein [Vibrio parahaemolyticus 16] gi|219550075|gb|EED27062.1| cell wall degradation protein [Vibrio parahaemolyticus 16] Length = 517 Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 85/296 (28%), Positives = 150/296 (50%), Gaps = 9/296 (3%) Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DL + +D + A+K FQ HGL G++ T + +NV + R+ L +N R Sbjct: 221 DLANVRRDVTYYDMSLVPAIKQFQKLHGLKEDGVIGPETAKWLNVSMKDRLTTLALNAER 280 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 I+ K ++VN+P+ + GK S V+VGR R TP++ + ++ ++ NP Sbjct: 281 IRYWPSDK--DTIIVVNVPSYEMTYWHGGKNVFESKVVVGRQARPTPLMITNLDTLILNP 338 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK--EVFVEEVDWNSPEPPNFIFR- 299 W +P I+ +D++ +++DP+YL +I ++ + G + +++DW++ P +F +R Sbjct: 339 TWNVPWKIMVEDIIPKMKEDPEYLTRQHIEILPKWGSKERIDPQQIDWDAMNPKSFPYRM 398 Query: 300 -QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 Q G NA+ K ++ Y+HDTP LFN R +SGC+RV + LL+ Sbjct: 399 TQLSGNQNALGLYKFNTPNKRAIYLHDTPSKGLFNEPQRAFSSGCIRVEHADVFASRLLE 458 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 ++ + R + L +PVH +Y +AW ++ +R+DIY LD Sbjct: 459 HQ-GLTKSKL-SAEADRSNKKIPLRKRIPVHIIYQTAWF-EEGKTHYREDIYQLDT 511 >gi|323492996|ref|ZP_08098133.1| hypothetical protein VIBR0546_16236 [Vibrio brasiliensis LMG 20546] gi|323312775|gb|EGA65902.1| hypothetical protein VIBR0546_16236 [Vibrio brasiliensis LMG 20546] Length = 448 Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 94/317 (29%), Positives = 169/317 (53%), Gaps = 10/317 (3%) Query: 103 HLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +G+ L +RL I +L + +D +E+AVK FQ HGL+ G++ T Sbjct: 131 KVGDKLEQRDVLLQRLEIVDVNLLDVRKDVSWYDRTLETAVKQFQRLHGLEADGIIGPET 190 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 ++ +N+P++ R+ L +N R + Q+ ++VN+P+ ++ +G+ +S V+V Sbjct: 191 IKWINLPIEKRLAILAINAERNRYWPVQR--DTIIVVNVPSFQMKYWNSGQEVFQSKVVV 248 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE- 280 G+ R TP++ ++++ ++ NP W +P I+ +D++ ++QD +YL NI +I + G + Sbjct: 249 GKKARPTPVMMTKLDSLILNPTWNVPWKIMVEDIIPKVKQDREYLARQNIMIIPKWGSQE 308 Query: 281 -VFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 + +E+DW++ P F +R Q G+ NA+ K +R Y+HDTP LF+ R Sbjct: 309 VINPDEIDWDNLNPHQFPYRMTQLSGQANALGLYKFNTPNRRAIYLHDTPSKGLFDETQR 368 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGC+RV N LL+ EE V + L + +PVH +Y +AW Sbjct: 369 AFSSGCIRVENADVFADTLLQTQGLVIEQ--EEQVSPTPNQAIPLKSRIPVHIIYQTAWY 426 Query: 398 PKDSIIQFRDDIYGLDN 414 ++ + +R+DIY LD Sbjct: 427 -EEGNVHYREDIYRLDR 442 >gi|333008910|gb|EGK28370.1| putative peptidoglycan binding domain protein [Shigella flexneri K-272] gi|333020220|gb|EGK39490.1| putative peptidoglycan binding domain protein [Shigella flexneri K-227] Length = 550 Score = 365 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 114/416 (27%), Positives = 173/416 (41%), Gaps = 81/416 (19%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPY-------ALSTPPL------SVINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLD------------------------------------------PSKG 129 LRE L +G LD P+ Sbjct: 253 PALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPA 312 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + A+D + AVK FQ GL G + +T + +NV R L +N+ R++ L + Sbjct: 313 VRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTE 372 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P + Sbjct: 373 L--STGIMVNIPAYSLLYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPT 430 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKI 305 + +KD++ +R DP YL+ + ++ + +VDW++ N FR Q PG Sbjct: 431 LARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPR 490 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 N++ K S Y+HDTP LF R +SGCVRV DL LL+D Sbjct: 491 NSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDAG 546 >gi|148978885|ref|ZP_01815205.1| hypothetical protein VSWAT3_22280 [Vibrionales bacterium SWAT-3] gi|145962083|gb|EDK27369.1| hypothetical protein VSWAT3_22280 [Vibrionales bacterium SWAT-3] Length = 519 Score = 364 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 92/317 (29%), Positives = 156/317 (49%), Gaps = 11/317 (3%) Query: 103 HLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LG+ L ER+ + G D S FD ++ A K FQ HG+ G++ T Sbjct: 206 RLGDKLSDKATLVERIALVGVDTSMIAVDSPRFDRDLQIATKAFQRMHGITADGIIGPDT 265 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 ++ +N+ D R+ L +N R + + ++VN+P+ ++ E+G+ S V+V Sbjct: 266 IKWINMGFDDRLTSLALNAERARLWPRNR--DSLIVVNVPSFDMKYWEDGEEVFESKVVV 323 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK-- 279 GR R+TP+L +++ ++ NP W +P I+ KD++ ++ D YL+ +N +ID Sbjct: 324 GRKSRKTPLLEIKLDSVILNPTWNVPWKIMVKDILPKVKADESYLETHNFQVIDGWRSME 383 Query: 280 EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 V E+DW + +F + RQ G NA+ K ++ Y+HDTP LFN+ R Sbjct: 384 TVDTTEIDWQTINFNSFPYRMRQQAGSSNALGLYKFNTPNKRAIYLHDTPSKSLFNDDFR 443 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGC+RV + +L L +++ T V+L +PVH +Y + Sbjct: 444 AYSSGCIRVEHAEELAELLFATKVKKVPNQSDDLAP---NTKVRLKKRIPVHIIYQTVLF 500 Query: 398 PKDSIIQFRDDIYGLDN 414 ++ IQ+R DIY D Sbjct: 501 GEEG-IQYRGDIYQYDK 516 >gi|325293005|ref|YP_004278869.1| hypothetical protein AGROH133_06435 [Agrobacterium sp. H13-3] gi|325060858|gb|ADY64549.1| hypothetical protein AGROH133_06435 [Agrobacterium sp. H13-3] Length = 645 Score = 364 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 105/380 (27%), Positives = 163/380 (42%), Gaps = 30/380 (7%) Query: 51 RFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSS- 108 + + + S P S + +A + ++P L GNSS Sbjct: 263 KLAGLSPDIAAYLRSREP--SNAEYLALKAELARLRSEGDAANTVKVPADLVLKPGNSSG 320 Query: 109 ---VSVQRLRERL----------IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 V+ + R IISG + + + VK FQ +GL G Sbjct: 321 DMASVVKAIEHRASPAFKAEHAAIISGY-----QQTPDYTPDLVDLVKAFQSENGLKADG 375 Query: 156 MVDSSTLEAMNV-PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 ++ +T+ AM D RI ++QV + +I+ L +G RYVL+N PA +G+ Sbjct: 376 VIGRATVRAMVGESNDARIAKVQVAMEQIR-WLPADLGQRYVLINQPAFMAYYHNDGQEQ 434 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 V+VG QT I + FNPYW +P+SII +M+ LR+DP YL + Sbjct: 435 FGMKVVVGSKANQTYFFQDEIQTVEFNPYWGVPQSIIVNEMLPKLRRDPSYLDRLGYEV- 493 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 G+ V V+W RQ P NA+ KI F + + YMHDTP FN Sbjct: 494 QVGGRAVSSTSVNWFG-STNAVSVRQPPSSDNALGDLKILFPNAHAIYMHDTPAKSFFNR 552 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 +R + GC+R+ + + +L S + E + K V++ ++PV+ Y + Sbjct: 553 DMRALSHGCIRLVDPRRMAAAVLGT----SVDKVNEQIAAGKNRAVQVPVKIPVYVAYFT 608 Query: 395 AWSPKDSIIQFRDDIYGLDN 414 AW K +QF DD+Y D+ Sbjct: 609 AWPDKAGKVQFFDDVYDRDS 628 >gi|190892061|ref|YP_001978603.1| hypothetical protein RHECIAT_CH0002473 [Rhizobium etli CIAT 652] gi|190697340|gb|ACE91425.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 636 Score = 364 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 170/388 (43%), Gaps = 24/388 (6%) Query: 55 FLARVDMGIDSDIPIISKE--TIAQTEKAIAFYQDILSRGGWPELPI---RPLHLGNSSV 109 LAR+ + + S + + +A + G ++ I + L G+SS Sbjct: 252 KLARMSPDAGAYLTSRSPDGPQFEALKAELAKLRA-ADGGNEEQIVISLDKLLRPGDSSP 310 Query: 110 SVQRLRERLIISG--DLDPSKGLSVA-------FDAYVESAVKLFQMRHGLDPSGMVDSS 160 V + + L G L + ++A + + + V+ FQ GL G++ + Sbjct: 311 EVANIVKALAKHGSETLKTNHAATLASYAGGRDYSPEIVALVEDFQKERGLKADGVIGQA 370 Query: 161 TLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 T+ AM +I +L V + + + L + +G RYV++N PA +GK L Sbjct: 371 TVRAMTGGDTNASKIDKLVVAMEQAR-WLPEDLGSRYVMINQPAYMAYYHNDGKEQLSMR 429 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 V+VG + QT I + FNP+W +P+SII +M+ LR DP YL + + G Sbjct: 430 VVVGGKNNQTYFFDDEIETVEFNPFWGVPQSIIINEMLPKLRSDPNYLDQLGYEV-EVNG 488 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 V VDW N RQ P NA+ KI F + + YMHDTP F +R Sbjct: 489 HAVASSSVDWYG-STDNVSVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDMRA 547 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 + GCVR+ N + +L + + + + + + V++ ++PV+ Y +AW Sbjct: 548 LSHGCVRLSNPRAMAAAVLGT----TVDDVAKQIASGQNHAVRVPQKIPVYVSYFTAWPN 603 Query: 399 KDSIIQFRDDIYGLDNVHVGIIPLPEDH 426 K+ ++++ DD+YG D Sbjct: 604 KEGVVEYFDDVYGRDAYVEKAFDATTKA 631 >gi|312883636|ref|ZP_07743361.1| hypothetical protein VIBC2010_12494 [Vibrio caribbenthicus ATCC BAA-2122] gi|309368859|gb|EFP96386.1| hypothetical protein VIBC2010_12494 [Vibrio caribbenthicus ATCC BAA-2122] Length = 517 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 88/315 (27%), Positives = 164/315 (52%), Gaps = 10/315 (3%) Query: 105 GNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ + L RL + G D+ + +DA +E A+K FQ HG++ G++ T++ Sbjct: 202 GDRLENRAILLRRLEMVGIDIHRVRKDVTWYDASLEDAIKQFQSLHGIEVDGVIGPVTIK 261 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 +N+ V+ R+ L +N RI+ +Q+ + ++VN+P+ L+ G+ S V+VGR Sbjct: 262 WLNLSVNKRLSILAINAERIRYWPDQR--EQLIVVNVPSFHLKYWRLGETVFESKVVVGR 319 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--V 281 R TP++ ++++ ++ NP W +P I+ +D++ +++D YL +NI ++ + G + Sbjct: 320 RGRPTPVMTTKLHSLILNPTWNVPWRIMVEDIIPKVKKDKNYLVRHNIKIVPKWGASDFI 379 Query: 282 FVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 E +DW+ +P F ++ Q G NA+ K +R Y+HDTP LF+ R Sbjct: 380 NPESIDWDRLKPSRFPYQMTQMSGDKNALGLFKFNTPNRRAIYLHDTPVKSLFDETQRAF 439 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 +SGC+R+ + LL+ E + + L + +PVH +Y +AW + Sbjct: 440 SSGCIRIEHADLFADLLLESEGLVIEEEDNEPL--GSNQSIPLKSRIPVHIIYQTAWY-E 496 Query: 400 DSIIQFRDDIYGLDN 414 + +R+DIY +D Sbjct: 497 GGNVHYREDIYRMDR 511 >gi|299136140|ref|ZP_07029324.1| ErfK/YbiS/YcfS/YnhG family protein [Acidobacterium sp. MP5ACTX8] gi|298602264|gb|EFI58418.1| ErfK/YbiS/YcfS/YnhG family protein [Acidobacterium sp. MP5ACTX8] Length = 604 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 101/375 (26%), Positives = 178/375 (47%), Gaps = 26/375 (6%) Query: 75 IAQTEKAIAFYQDIL---SRGGWPELP------IRPLHLGNSSVSVQRLRERLIISGDLD 125 +K +A Y ++ + P LP + + G S ++ +L RL + GD+ Sbjct: 216 YVALQKGLAQYLELAKQQAANPQPPLPSLGATGAKSIVQGGSYAALPQLLARLQLEGDVT 275 Query: 126 PSKGL---------SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 + +++A + +AVK +Q RHGL G + ST++++NVP+++R++QL Sbjct: 276 ATDTDTAAASDTAGPRSYNAELVAAVKHYQQRHGLTADGKLTQSTIDSLNVPMEVRVQQL 335 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVG--RVDRQTPILHS 233 +L R + + + + R VLVN+P + A + + V + ++ G + + TP+ Sbjct: 336 NNSLERWRWMPDNFINPR-VLVNLPEFVVRAYDPDHSVAFKMKIVDGEAKGNHDTPMFVR 394 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQ-DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 + ++F PYW +P SII+K+++ +++ YL D + G V + E Sbjct: 395 SMRYVVFRPYWNVPPSIIKKELLPHIQRSGIGYLADKGYEVARNDGTVV--TGYTAHDIE 452 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 +I RQ PG N++ K F + + YMH TPE LFN R + GCVR+ + + Sbjct: 453 HLRYIVRQKPGPKNSLGLVKFLFPNEYDVYMHSTPELPLFNLTRRDRSHGCVRLEHADQM 512 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRK-TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 W+L+ W I E + K V L T +PV Y +A + +D+ I F D+YG Sbjct: 513 AAWVLQGQGDWDEDKISEAMNGDKDNKTVNLKTTLPVIIGYFTATADEDNSIHFFSDLYG 572 Query: 412 LDNVHVGIIPLPEDH 426 D + + Sbjct: 573 YDKALEAALDKGMPY 587 >gi|92116782|ref|YP_576511.1| peptidoglycan binding domain-containing protein [Nitrobacter hamburgensis X14] gi|91799676|gb|ABE62051.1| Peptidoglycan-binding domain 1 [Nitrobacter hamburgensis X14] Length = 775 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 101/432 (23%), Positives = 185/432 (42%), Gaps = 39/432 (9%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLA---RVDMGIDSDIPIIS 71 ++ +H S + I H I ++ + +DS P Sbjct: 304 LTASMMNYARQAQSGRMHWSQVGADIQYPEHPIDPEQVLTNVTTAKDASAALDSYNPP-- 361 Query: 72 KETIAQTEKAIAFYQD-----ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 ++ + ++ +A + ++ P L R + V ++R +L ++ Sbjct: 362 QKLYRELKQKLAELRKTSEGPVVEIAEGPSLVFRKNAV-MEDPRVPQIRAKLGVT----- 415 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMRIKK 185 FDA V +AV+ FQ R+ L P G+ ++T+ A+N P +I + VN+ R + Sbjct: 416 QNPDDAHFDADVAAAVREFQTRNHLQPDGIAGNNTIRALNGPRKGHQIDTIIVNMERWRW 475 Query: 186 LL----EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD-RQTPILHSRINRIMF 240 L +G Y ++NIP +L+ +++G + V+VG+ TP+L + I Sbjct: 476 LPRELGAPSLGNAYAILNIPDYTLKVMQHGAQLWSTRVVVGKPGIHATPLLTETMKYITV 535 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP W +P SII K+ + L+QDP L+ + + ++ + + Q Sbjct: 536 NPTWNVPPSIIYKEYLPALQQDPTVLERMGLKLERDRNGGIHIS---------------Q 580 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG NA+ + F ++ Y HDTP+ LF R + GC+RV+N LL Sbjct: 581 PPGDRNALGRIRFNFPNKFLVYQHDTPDKYLFAKEKRAFSHGCMRVQNPDQYAATLLNIA 640 Query: 361 PTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVG 418 Y E++ + RK +K T +PV+ Y +A+ +Q R D+YG D + Sbjct: 641 LPQEHYTPEKIRGMYGRKEFDIKFPTPIPVNITYQTAFVDHAGKLQIRPDVYGSDAKMLA 700 Query: 419 IIPLPEDHPIDS 430 ++ P+ +++ Sbjct: 701 LLRNPKGRDLEA 712 >gi|218709906|ref|YP_002417527.1| hypothetical protein VS_1919 [Vibrio splendidus LGP32] gi|218322925|emb|CAV19102.1| conserved hypothetical protein [Vibrio splendidus LGP32] Length = 518 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 93/317 (29%), Positives = 156/317 (49%), Gaps = 11/317 (3%) Query: 103 HLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LG+ L ER+ + G D FD +++A+K FQ HGL G+V T Sbjct: 205 RLGDPLSDKPILVERIALVGVDTSMIAVDFPVFDQDLQTAIKSFQRMHGLTDDGIVGPDT 264 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 ++ +N+ D R+ L +N R++ + ++VN+P+ ++ E+G+ S V+V Sbjct: 265 IKWINMSFDERLTSLALNAERVRLWPRDR--DSLIVVNVPSFDMKYWEDGEEVFESKVVV 322 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--K 279 GR R+TP+L ++ ++ NP W +P I+ KD++ ++ D YL+ +N +ID + Sbjct: 323 GRKSRKTPLLEINLDSVILNPTWNVPWKIMVKDILPKVKADESYLETHNFQVIDGWRTME 382 Query: 280 EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 V ++DW + +F + RQ G NA+ K ++ Y+HDTP LFN+ R Sbjct: 383 TVDTTDIDWQTINFNSFPYRMRQQAGSRNALGLYKFNTPNKRAIYLHDTPSKGLFNDDFR 442 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGC+RV + +L L R + T V+L +PVH +Y + Sbjct: 443 AYSSGCIRVEHAEELAELLFATKV---RKVPNQSNDLAPNTKVRLKKRIPVHIIYQTVLF 499 Query: 398 PKDSIIQFRDDIYGLDN 414 + IQ+R DIY D Sbjct: 500 EEGG-IQYRGDIYQYDK 515 >gi|90425452|ref|YP_533822.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris BisB18] gi|90107466|gb|ABD89503.1| Peptidoglycan-binding domain 1 [Rhodopseudomonas palustris BisB18] Length = 730 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 106/432 (24%), Positives = 176/432 (40%), Gaps = 44/432 (10%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGID---SDIPIIS 71 +L +H S + I H I + S P Sbjct: 256 LTASMLDYARQAQSGRMHWSQVSGDIQYPEHPIDPAEVLANVTAAADPSAALASYNPP-- 313 Query: 72 KETIAQTEKAIAFYQ---------DILSRGGWPELPIRPLH--LGNSSVSVQRLRERLII 120 + Q + +A + I +P R + V +LR +L I Sbjct: 314 HKMYRQLKAKLAELRGQGDGPGAIQIAEGPALKYIPARKKQAAVEVDDPRVPQLRAKLGI 373 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVN 179 S S +DA V +AV+ FQ L +G++D T+ A+N P R I + VN Sbjct: 374 S-----ENPDSTRYDAKVAAAVRKFQDSADLKETGVLDERTVTALNSPKSDRQIDTVIVN 428 Query: 180 LMRIKKLL----EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV-DRQTPILHSR 234 + R + L +G YV++NIP +L+ +++G + V+VG+ + TP+L Sbjct: 429 MERWRWLPRVLGAPSLGDAYVILNIPDYTLKVMQHGAPVWTTRVVVGKPGNHATPLLTET 488 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 + I NP W +P SII + + L+QDP L + + + + + Sbjct: 489 MKYITVNPTWNVPPSIIYNEYLPALQQDPTVLDRMGLKLERNRDGSIHIS---------- 538 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 Q PG+ NA+ + F ++ Y HDTP+ LF+ R + GC+RV+N Sbjct: 539 -----QPPGERNALGRIRFNFPNKFLVYQHDTPDKNLFSRDARAFSHGCMRVQNPDQYAA 593 Query: 355 WLLKDTPTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LL RY E++ + + +K AT +PV+ Y +A+ +Q R D+YG Sbjct: 594 TLLNIAMPNERYTPEKIRGMYGKSEIDLKFATPIPVNLTYQTAFVDDAGKLQTRKDVYGR 653 Query: 413 DNVHVGIIPLPE 424 D + I+ P+ Sbjct: 654 DAAMLAILRNPK 665 >gi|126663199|ref|ZP_01734197.1| hypothetical protein FBBAL38_07595 [Flavobacteria bacterium BAL38] gi|126624857|gb|EAZ95547.1| hypothetical protein FBBAL38_07595 [Flavobacteria bacterium BAL38] Length = 529 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 107/368 (29%), Positives = 182/368 (49%), Gaps = 21/368 (5%) Query: 70 ISKETIAQTEKAIA--------FYQDILSRGGWPELPIRPLH------LGNSSVSVQRLR 115 I ++TIA T A+ + +L P + + + L ++ + +++ Sbjct: 162 IKEKTIASTFNALKPNHIVYKSLKKSLLEINKLPNISFQKIEIKNKIILNDTLPEMVKIK 221 Query: 116 ERLIISGDLDPSKGL-SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 +RL D L + +D AVK FQ RHGL G++ T++A+N + RI Sbjct: 222 KRLAYWKDYKNKDSLITWVYDTITYKAVKRFQARHGLAQDGVIGIGTIKALNTTKNERIE 281 Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 Q+ NL R K +G Y++ NIP L V N + ++VG R+TPIL S+ Sbjct: 282 QIFANLERWK-WYPFDLGEEYLIANIPEYMLNYVTNNDTVAKYRIVVGTKKRKTPILTSK 340 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 ++ +FNP W IP +II++D+ ++ Y ++ + + KG EV EE WN + Sbjct: 341 LSNFVFNPTWTIPPTIIKEDLTPAASKNRNYFPSRSLTIYNNKGTEVSPEE--WNPAKAN 398 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 ++ + Q PG N++ K+ F +R++ Y+HDT F+ R +SGCVRV + L Sbjct: 399 SYRYVQKPGYNNSLGLVKLNFLNRHSVYLHDTNHRDYFSKTYRSLSSGCVRVETPLVLVK 458 Query: 355 WLL--KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 +L + WS I+ ++K KT V + V ++ Y ++W +++ +QFR+DIY L Sbjct: 459 QILVKSNQEKWSGSEIDSIIKLEKTKTVSIKDTVNIYIFYWTSWF-ENNKLQFREDIYDL 517 Query: 413 DNVHVGII 420 D + Sbjct: 518 DKSLYEKL 525 >gi|217978718|ref|YP_002362865.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] gi|217504094|gb|ACK51503.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocella silvestris BL2] Length = 629 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 95/328 (28%), Positives = 153/328 (46%), Gaps = 24/328 (7%) Query: 97 LPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 +P P L +G V +R RL + G + ++ +D V SAV FQ +GL SG Sbjct: 322 IPTGPTLKVGMRDPRVPLIRSRLSLDG--REGEPENLVYDTQVASAVADFQKANGLPGSG 379 Query: 156 MVDSSTLEAMNVPVDLRIRQ-LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 +++ T+ ++ R+ + N+ R + + + MG + VNIP + +ENG V Sbjct: 380 QLNARTIALLSGGDQSRVEAEILANMERWR-WMPRDMGESRIEVNIPDYEVSVIENGAVI 438 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 ++ V+VG+ D TP+ + + ++ NPYW +P+SII+K+MM + DP YL + Sbjct: 439 SQNRVVVGKEDTPTPVFSNTMQFLIVNPYWTVPQSIIRKEMMPKIAADPNYLHRMGYEAV 498 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 + GK RQ PG+ NA+ K F + Y+HDTP LF Sbjct: 499 WKNGK----------------LGVRQPPGERNALGRIKFMFPNDYAVYLHDTPSRALFEQ 542 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 R + GCVRV + +L WS +++++ K V LA +P+H Y + Sbjct: 543 HKRAFSHGCVRVDDPFRFAQSVLG--KGWSEERVQKLI-GGKERYVHLAKPLPIHLEYFT 599 Query: 395 AWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 A +Q +DIYG + L Sbjct: 600 AKVDPYGQLQLSEDIYGFSRKVRAALGL 627 >gi|209694858|ref|YP_002262786.1| hypothetical protein VSAL_I1327 [Aliivibrio salmonicida LFI1238] gi|208008809|emb|CAQ79012.1| putative exported protein [Aliivibrio salmonicida LFI1238] Length = 512 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 106/379 (27%), Positives = 187/379 (49%), Gaps = 25/379 (6%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR---------GGWPELPIRPLHLG 105 + +V+ + D + Q + YQD+ +R P+L L Sbjct: 134 LIEKVNQHFEDDTLTA---LVNQLKPQSKQYQDLYTRLYRYYDPYHQEAPKLYSSRLLKP 190 Query: 106 NSSVSVQRLRERLIISGDLDPSK------GLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 N + + L RL ISG+L+ + ++ + + VK FQ RHGL G+V Sbjct: 191 NQDIPYKSLVYRLQISGELNEEQIHYFLSQEGDKYNNELVNVVKSFQKRHGLVVDGIVGK 250 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 TL +N+ + R+R + +N+ R++ + R+VLVNIP+ + G++ +S V Sbjct: 251 RTLYWLNMSANERVRIMALNIQRLRLW--ENKNARFVLVNIPSYEMGYWLKGELVFKSKV 308 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK-- 277 IVG+ +R+TP+ +R++ I+FNP W +P I+++D++ ++ YL +N ++ Sbjct: 309 IVGKPERKTPLFTTRLDSIVFNPNWKVPTKIMKEDILPKALENQDYLLTHNYEVLPSWLS 368 Query: 278 GKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 + + E ++W + NF + RQ G NA+ K +RN Y+HDTP LFN Sbjct: 369 DEVIPFESIEWETMTVDNFPYKLRQKSGNANALGRYKFNTPNRNAIYLHDTPSRSLFNKQ 428 Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 R +SGC+RV + L+K++ ++ + KT V L+ ++ V+ +Y +A Sbjct: 429 HRAYSSGCIRVEKASEFAQLLMKES-HFTAKDYAGYHRLPKTNTVGLSQKIAVYTIYQTA 487 Query: 396 WSPKDSIIQFRDDIYGLDN 414 W + IQFR+D+Y D Sbjct: 488 WVDEADTIQFRNDVYRYDE 506 >gi|84393105|ref|ZP_00991870.1| Uncharacterized protein conserved in bacteria [Vibrio splendidus 12B01] gi|84376262|gb|EAP93145.1| Uncharacterized protein conserved in bacteria [Vibrio splendidus 12B01] Length = 512 Score = 363 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 93/317 (29%), Positives = 156/317 (49%), Gaps = 11/317 (3%) Query: 103 HLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LG+ L ER+ + G D FD +++A+K FQ HGL G+V T Sbjct: 199 RLGDELSDKAVLVERIALVGVDTSMIAVDFPEFDRDLQTAIKSFQRMHGLTDDGIVGPDT 258 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 ++ +N+ D R+ L +N R++ + ++VN+P+ ++ E+G+ S V+V Sbjct: 259 IKWINMSFDDRLTSLALNAERVRLWPRDR--DSLIVVNVPSFDMKYWEDGEEVFESKVVV 316 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--K 279 GR R+TP+L ++ ++ NP W +P I+ KD++ ++ D YL +N +ID + Sbjct: 317 GRKSRKTPLLEINLDSVILNPTWNVPWKIMVKDILPKVKADESYLDTHNFQVIDGWRTME 376 Query: 280 EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 V E+DW + +F + RQ G NA+ K ++ Y+HDTP LFN+ R Sbjct: 377 TVDTTEIDWQTINFNSFPYRMRQQAGSRNALGLYKFNTPNKRAIYLHDTPSKGLFNDDFR 436 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGC+RV + +L L +++ T V+L +PVH +Y + Sbjct: 437 AYSSGCIRVEHAEELAELLFATKVRKVPNQSDDLAP---NTKVRLKKRIPVHIIYQTVLF 493 Query: 398 PKDSIIQFRDDIYGLDN 414 + IQ+R DIY D Sbjct: 494 EEGG-IQYRGDIYQYDK 509 >gi|315179999|gb|ADT86913.1| conserved hypothetical protein [Vibrio furnissii NCTC 11218] Length = 517 Score = 363 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 96/358 (26%), Positives = 164/358 (45%), Gaps = 12/358 (3%) Query: 63 IDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG 122 ID P Q A + I + + R G+ + L +RL + Sbjct: 162 IDEYTP--QDAAYRQLVSAYRYLSQIEPQMLSVYVQARLKRPGDKLEDRRTLIQRLSLVN 219 Query: 123 -DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 D+ +D + VK FQ HGL G++ TL+ +N+ V R+ L +N Sbjct: 220 IDVAGISDNVTWYDNSLVEPVKQFQKMHGLKIDGIIGPDTLKWLNMKVPERLALLALNAE 279 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R++ Q ++VN+P +L+ +GK S V+VGRV R TP++ ++++ ++ N Sbjct: 280 RMRLWSTQD--DTVIVVNVPGYNLKYWYSGKPVFESKVVVGRVTRPTPVMSTKLDSLILN 337 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEEVDWNSPEPPNFIF- 298 P W +P I+ +D++ + ++D YL ++I +I+ + + +DW + P F + Sbjct: 338 PTWKVPHKIMVEDILPMTKRDASYLSRHHIDIIESWKSDQTLDPALIDWQNVNPKTFPYR 397 Query: 299 -RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 RQ G NA+ K ++ Y+HDTP LFN+ R +SGC+RV + LL Sbjct: 398 MRQQAGNQNALGLYKFNTPNKRAIYLHDTPSKHLFNHPTRAFSSGCIRVEHADQFATALL 457 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + I + L +PVH +Y + W + + +RDDIY LD + Sbjct: 458 ETQGINHSELIPNADDA--NRAIPLKKRIPVHIIYQTVWY-EGGEVHYRDDIYRLDRI 512 >gi|86148447|ref|ZP_01066737.1| Uncharacterized protein conserved in bacteria [Vibrio sp. MED222] gi|85833744|gb|EAQ51912.1| Uncharacterized protein conserved in bacteria [Vibrio sp. MED222] Length = 512 Score = 363 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 94/317 (29%), Positives = 156/317 (49%), Gaps = 11/317 (3%) Query: 103 HLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LG+ L ER+ + G D FD ++SA+K FQ HGL G+V T Sbjct: 199 RLGDELSDKTILVERIALVGVDTSMIAVDFPVFDQDLQSAIKSFQRMHGLTDDGIVGPDT 258 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 ++ +N+ D R+ L +N R++ + ++VN+P+ ++ E+G+ S V+V Sbjct: 259 IKWINMSFDERLTSLALNAERVRLWPRDR--DSLIVVNVPSFDMKYWEDGEEVFESKVVV 316 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--K 279 GR R+TP+L ++ ++ NP W +P I+ KD++ ++ D YL+ +N +ID + Sbjct: 317 GRKSRKTPLLEINLDSVILNPTWNVPWKIMVKDILPKVKADESYLETHNFQVIDGWRTME 376 Query: 280 EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 V ++DW + +F + RQ G NA+ K ++ Y+HDTP LFN+ R Sbjct: 377 TVDTTDIDWQTINFNSFPYRMRQQAGSRNALGLYKFNTPNKRAIYLHDTPSKGLFNDDFR 436 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGC+RV + +L L R + T V+L +PVH +Y + Sbjct: 437 AYSSGCIRVEHAEELAELLFATKV---RKVPNQSNDLAPNTKVRLKKRIPVHIIYQTVLF 493 Query: 398 PKDSIIQFRDDIYGLDN 414 + IQ+R DIY D Sbjct: 494 EEGG-IQYRGDIYQYDK 509 >gi|312113144|ref|YP_004010740.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodomicrobium vannielii ATCC 17100] gi|311218273|gb|ADP69641.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodomicrobium vannielii ATCC 17100] Length = 725 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 93/379 (24%), Positives = 161/379 (42%), Gaps = 36/379 (9%) Query: 73 ETIAQTEKAIAFYQDILSRGGWP-ELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGL 130 E + +A+ G +P G+ + +R+RL D Sbjct: 288 EQFKRLRQALIALGKTTDSGTSSIRIPAGKTFKPGDDDAQIALIRKRLNAGLD----APR 343 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN----VPVDLRIRQLQVNLMRIKKL 186 +D + AV FQ GL+ +G+VD A+N VD + +L VN+ R + Sbjct: 344 DTIYDEALLVAVNRFQKERGLNVNGIVDKKLRAALNEGAGGSVDEKKMRLIVNMERWR-W 402 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + +G YV +IP + + G+V + ++VG+ QTP +++ ++FNP W + Sbjct: 403 MPDDLGEFYVWNSIPEQTTRVFDRGRVAFQERIVVGKPTSQTPSFSAKMQFVIFNPEWGV 462 Query: 247 PRSIIQKDMMALLRQ----DPQ---------------------YLKDNNIHMIDEKGKEV 281 P I ++ LR+ P L+ + G++V Sbjct: 463 PDGIKANEIAPKLRRAAPSGPSDDLFSFLGGRSGGGGGGGASSVLQRLGGLRVTYNGRDV 522 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 + VDW+ + + F Q G NA+ K F ++++ YMHDTPE LF + R + Sbjct: 523 DPDSVDWSRVDARRYSFIQPAGPRNALGVVKFRFPNKHDVYMHDTPEKSLFGSATRAFSH 582 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GC+R +N + +L + I +++ +TT KL +PVH VY +A + Sbjct: 583 GCMRTQNPVRFAEVILAYDNGTTPEQIRRQIESGQTTENKLTKTIPVHMVYFTAAPDEKG 642 Query: 402 IIQFRDDIYGLDNVHVGII 420 I++ D+YGLD + Sbjct: 643 DIRYFSDLYGLDARVASAL 661 >gi|15888928|ref|NP_354609.1| hypothetical protein Atu1615 [Agrobacterium tumefaciens str. C58] gi|15156702|gb|AAK87394.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 642 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 103/375 (27%), Positives = 162/375 (43%), Gaps = 20/375 (5%) Query: 51 RFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSV 109 + V + S P S + +A + +P L GNSS Sbjct: 260 KLAGLSPDVAAYLRSREP--SSAEYLALKAELARLRGEGDTAHTVRVPADLVLKPGNSSA 317 Query: 110 S----VQRLRERLIISGDLDPSKGLSVA-----FDAYVESAVKLFQMRHGLDPSGMVDSS 160 V+ + R + + + +S + + VK FQ +GL P G++ + Sbjct: 318 DMASVVKAIEHRASPAFKAEHAAIMSAYQQTPDYTPDLVDLVKAFQSENGLKPDGVIGRA 377 Query: 161 TLEAMNV-PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 T+ AM D +I ++QV + +++ L +G RYV +N PA +G V Sbjct: 378 TVRAMVGESNDAKIAKVQVAMEQVR-WLPADLGQRYVFINQPAFMAYYHNDGVEQFGMKV 436 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 +VG QT I + FNPYW +P+SII +M+ LR+DP YL + G+ Sbjct: 437 VVGSKANQTYFFQDEIQTVEFNPYWGVPQSIIVNEMLPKLRRDPSYLDRLGYEV-QVGGR 495 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 V V+W RQ P NA+ KI F + + YMHDTP FN +R Sbjct: 496 AVSSSSVNWYG-STNAVSVRQPPSSDNALGDLKILFPNAHAIYMHDTPAKSFFNRDMRAL 554 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 + GC+R+ + + +L S + E + K V++ +VPV+ Y +AW K Sbjct: 555 SHGCIRLVDPRRMAAAVL----GSSVDKVNEQIAAGKNRAVQVPEKVPVYVAYFTAWPDK 610 Query: 400 DSIIQFRDDIYGLDN 414 D +QF DD+Y D+ Sbjct: 611 DGKVQFFDDVYDRDS 625 >gi|86748553|ref|YP_485049.1| hypothetical protein RPB_1428 [Rhodopseudomonas palustris HaA2] gi|86571581|gb|ABD06138.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2] Length = 718 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 107/429 (24%), Positives = 175/429 (40%), Gaps = 47/429 (10%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE- 73 ++ +H S I H I + LA V D+ + S Sbjct: 243 LTESMMDYARQAQSGRMHWSQAGSDIQYPEHPIDPA---DVLASVTTAKDASAALGSYNP 299 Query: 74 ---TIAQTEKAIAFYQ--------DILSRGGWPELPIRPLH--LGNSSVSVQRLRERLII 120 + +K +A + I +P R + V +LR +L I Sbjct: 300 PHRLYKELKKKLAELRGESDGPVLKIAEGETLKFVPARKKQAAVTMDDPRVPQLRAKLGI 359 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVN 179 + D D S +DA V AV+ FQ L P+G++D T++A+N P R I + VN Sbjct: 360 TEDAD-----STTYDAKVAEAVRKFQRGADLKPTGILDDRTVKALNTPKRDRTIDTIMVN 414 Query: 180 LMRIKKLLEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV-DRQTPILHSR 234 + R + L Q +G YV++N+P +L+ + NG + V++G+ TP+L Sbjct: 415 MERWRWLPRQLGAASLGDAYVILNVPDYTLKLMHNGAQVWTTRVVIGKPGKHATPLLTET 474 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 + I NP W +P SII + + L QDP L + M + + + Sbjct: 475 MKYITVNPTWNVPPSIINNEYLPALAQDPTVLDRMGLKMSRNRDGSIHIS---------- 524 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 Q PG+ NA+ + F ++ Y HDTP+ LF R + GC+RV+N Sbjct: 525 -----QPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAREERAFSHGCMRVQNPDQYAA 579 Query: 355 WLLK---DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 LL ++ I + R + T +PV+ Y +A+ D +Q R D+YG Sbjct: 580 ALLNIAMPDKDYTPAKI-RSMYGRSEVNLNFPTPIPVNITYQTAFVDDDGKLQLRKDVYG 638 Query: 412 LDNVHVGII 420 D + ++ Sbjct: 639 RDARMLALL 647 >gi|119945331|ref|YP_943011.1| cell wall degradation protein [Psychromonas ingrahamii 37] gi|119863935|gb|ABM03412.1| cell wall degradation protein [Psychromonas ingrahamii 37] Length = 513 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 102/395 (25%), Positives = 182/395 (46%), Gaps = 26/395 (6%) Query: 36 LDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWP 95 + + ++ F+ ++ + + IS + YQ+IL P Sbjct: 129 IKNSLKAPSKESIDAFFNTGSPQIRLRYLQRLSPISAQQSQ-------LYQNILKLKNKP 181 Query: 96 E--LPIRPL----HLGNSSVSVQRLRERLIISGDLDPSKGL------SVAFDAYVESAVK 143 L +G+S + L RL ISG+L + + + ++ Sbjct: 182 VQIFDAVKLTEFAKIGDSLAQKKVLLSRLEISGELSSQEKQQIELENHQGYSQKLGEIIR 241 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 FQ+RHGL+P G++ +TL +N+ R+R + +N++R + R V++NIP Sbjct: 242 SFQIRHGLEPDGIIGKNTLYWLNISRQERVRLMALNILRQQLWTMDN--TRKVIINIPDY 299 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 ++E E + S VIVG+ R+TP+ +++N I+FNP W +P I+++D++ + D Sbjct: 300 TMEYWEEDQKIFESKVIVGQTKRKTPLFSAQLNAIVFNPRWNVPTIIMREDILPKVLLDI 359 Query: 264 QYLKDNNIHMI--DEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRN 319 YL ++ +I + K + E ++W NF + RQ G+ NA+ K + N Sbjct: 360 NYLSRHSYEIIENYQSQKVIDAETINWKLITVHNFPYRLRQKSGENNALGLYKFNTPNNN 419 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 + Y+HDTP LF R +SGC+RV+ ++L+ D + +T+ Sbjct: 420 SIYLHDTPAKNLFEKQDRAFSSGCIRVQKAEQFALFLM-DKSGYPLERYNIHHNVPETSS 478 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 V L ++ V+ VY + W + QFR+DIY D Sbjct: 479 VSLKKKITVYSVYRTVWVDQFGFTQFRNDIYHYDK 513 >gi|116252447|ref|YP_768285.1| hypothetical protein RL2700 [Rhizobium leguminosarum bv. viciae 3841] gi|115257095|emb|CAK08189.1| conserved hypothetical exported protein [Rhizobium leguminosarum bv. viciae 3841] Length = 637 Score = 362 bits (930), Expect = 6e-98, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 170/388 (43%), Gaps = 24/388 (6%) Query: 55 FLARVDMGIDSDIPIISKE--TIAQTEKAIAFYQDILSRGGWPELPI---RPLHLGNSSV 109 L+R+ + + I S + + +A + G + + R L G+SS Sbjct: 253 KLSRMSPDVGAYIASRSPDSPQFQALKAELAKLRA-ADGGNEERIVVSLDRLLRPGDSSP 311 Query: 110 SVQRLRERLIISGDLD---------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + + + + G + S+ + + S V+ FQ GL P G++ + Sbjct: 312 EIANIVKAIGKHGSETLNTDHAATLAAYAGSIDYSPDIVSLVEDFQKERGLKPDGVIGQA 371 Query: 161 TLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 T+ AM +I +L V + + + L + +G RYV++N PA + +GK L Sbjct: 372 TVRAMTGGDTNASKIDKLVVAMEQAR-WLPEDLGSRYVMINQPAYMVYYHNDGKEQLSMR 430 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 V+VG + QT I + FNP+W +P+SII +M+ LR DP YL + + G Sbjct: 431 VVVGGKNNQTYFFDDEIETVEFNPFWGVPQSIIINEMLPKLRSDPNYLDQLGYEV-EVNG 489 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 V VDW N RQ P NA+ KI F + + YMHDTP F +R Sbjct: 490 HAVASSSVDWYG-STNNVSVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDMRA 548 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 + GCVR+ + + +L + I + + + + V++ ++PV+ Y +AW Sbjct: 549 LSHGCVRLADPRAMAAAVLGT----TVDDIAKQIASGQNHAVRVPQKIPVYVSYFTAWPN 604 Query: 399 KDSIIQFRDDIYGLDNVHVGIIPLPEDH 426 KD ++++ DD+YG D Sbjct: 605 KDGVVEYFDDVYGRDGYVDKAFDATSKA 632 >gi|209884231|ref|YP_002288088.1| peptidoglycan-binding domain 1 [Oligotropha carboxidovorans OM5] gi|209872427|gb|ACI92223.1| peptidoglycan-binding domain 1 [Oligotropha carboxidovorans OM5] Length = 712 Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats. Identities = 93/323 (28%), Positives = 150/323 (46%), Gaps = 28/323 (8%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V LR +L I+ +DA V +AV+ FQ +GL +G++D TL A+ Sbjct: 343 MEDARVPALRAKLGIT-----ENASDTHYDATVATAVRKFQAANGLKATGVLDKQTLAAL 397 Query: 166 NVPVDLR-IRQLQVNLMRIKKLLEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 N P + R I ++VN+ R + L +G YV++NIP SL+ + NG ++ V+ Sbjct: 398 NGPKNDRKIDIVRVNMERWRWLPRDLGAKALGDAYVVLNIPDYSLKLMHNGAPVWKTRVV 457 Query: 221 VGRV-DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 VG+ TP L + I NP W +P SII + + L+QDP L+ + + Sbjct: 458 VGKPGKHATPELTETMKYITVNPTWNVPPSIIYNEYLPALQQDPTVLERMGLKLQRNPDG 517 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 + + Q PG+ NA+ + F ++ Y HDTP+ LF R Sbjct: 518 TIRIS---------------QPPGERNALGRIRFNFPNKFLVYQHDTPDKHLFAKTERAF 562 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWS 397 + GC+RV+N LL Y E++ + R + T +PV+ VY +A+ Sbjct: 563 SHGCMRVQNPDQYAANLLSIALPKDHYTPEKIRGMYGRSEININFPTPIPVNIVYHTAFV 622 Query: 398 PKDSIIQFRDDIYGLDNVHVGII 420 +++FR DIYG D + ++ Sbjct: 623 DDAGVLEFRKDIYGRDARMISLL 645 >gi|241204955|ref|YP_002976051.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858845|gb|ACS56512.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 637 Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats. Identities = 99/388 (25%), Positives = 169/388 (43%), Gaps = 24/388 (6%) Query: 55 FLARVDMGIDSDIPIISKE--TIAQTEKAIAFYQDILSRGGWPELPI---RPLHLGNSSV 109 LAR+ + + I S + + +A + G + + R L G+SS Sbjct: 253 KLARLSPDVGAYIASRSPDSSQFQALKAELAKLRA-ADGGNEERIVVSLDRLLRPGDSSP 311 Query: 110 SVQRLRERLIISGDLD---------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + + + + G + S+ + + S V+ FQ GL G++ + Sbjct: 312 EIANIVKAIGKHGSETLRTDHAATLAAYAGSIDYSPDIVSLVEEFQKERGLKADGVIGQA 371 Query: 161 TLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 T+ AM +I +L V + + + L + +G RYV++N PA + +GK L Sbjct: 372 TVRAMTGGDTNASKIDKLIVAMEQAR-WLPEDLGSRYVMINQPAYMVYYHNDGKEQLSMR 430 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 V+VG + QT I + FNP+W +P+SII +M+ LR DP YL + + G Sbjct: 431 VVVGGKNNQTYFFDDEIETVEFNPFWGVPQSIIINEMLPKLRSDPNYLDQLGYEV-EVNG 489 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 V VDW N RQ P NA+ KI F + + YMHDTP F +R Sbjct: 490 HAVASSSVDWYG-STNNVSVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDMRA 548 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 + GCVR+ + + +L + + + + + + V++ ++PV+ Y +AW Sbjct: 549 LSHGCVRLADPRAMAAAVLGT----TVDDVAKQIASGQNHAVRVPQKIPVYVSYFTAWPN 604 Query: 399 KDSIIQFRDDIYGLDNVHVGIIPLPEDH 426 KD ++++ DD+YG D Sbjct: 605 KDGVVEYFDDVYGRDAYVDKAFDATTKA 632 >gi|154246011|ref|YP_001416969.1| peptidoglycan binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154160096|gb|ABS67312.1| Peptidoglycan-binding domain 1 protein [Xanthobacter autotrophicus Py2] Length = 672 Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats. Identities = 97/362 (26%), Positives = 156/362 (43%), Gaps = 37/362 (10%) Query: 83 AFYQDILSR-----GGWPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 A Y+ + ++ G P + P + G S + LR RL ++G A Sbjct: 318 AGYRALKAQLARVTGQTPGVVAVPPGAQIRPGASDPRIPTLRTRLGVTG----RPADDNA 373 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV----DLRIRQLQVNLMRIKKLLEQ 189 +D + AVK FQ + P+G+V ST+ A+N + N+ R + L + Sbjct: 374 YDPALVDAVKAFQEASKIKPTGIVGPSTIAALNAGATPGGGSLKSDVIANMERWR-WLPR 432 Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 +G YV+VNIP + ++G + V+VG+ + TP+L + I+ NP W IP S Sbjct: 433 DLGESYVMVNIPEFLVRIYQSGHEIHETRVVVGKPETPTPLLSREMQYIVVNPAWNIPPS 492 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I + +MM LLR DP L I ++ + FRQ P + NA+ Sbjct: 493 IARNEMMPLLRSDPSALSRRGIEVVRNGS---------------GGYSFRQVPSERNALG 537 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK---DTPTWSRY 366 K F + ++ Y+HDTP LF N R + GCVRV + + W++ Sbjct: 538 RIKFMFPNDHSVYLHDTPSKALFQNDRRAYSHGCVRVYEPLKFGEVIFNLGLPNDHWTQT 597 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDH 426 I ++ + V L PVH VY + + R+D+YG++ ++ L Sbjct: 598 RIGKMFGS-SERYVNLKQRFPVHIVYFNVVVDDAGRLAVREDLYGINAETKTLLGLNGKQ 656 Query: 427 PI 428 I Sbjct: 657 RI 658 >gi|83859233|ref|ZP_00952754.1| hypothetical protein OA2633_12550 [Oceanicaulis alexandrii HTCC2633] gi|83852680|gb|EAP90533.1| hypothetical protein OA2633_12550 [Oceanicaulis alexandrii HTCC2633] Length = 506 Score = 362 bits (929), Expect = 8e-98, Method: Composition-based stats. Identities = 113/371 (30%), Positives = 167/371 (45%), Gaps = 14/371 (3%) Query: 55 FLARVDMGIDSDIPIISK--ETIAQTEKAIAFYQDILSRGGWPEL--PIRPLHLGNSSVS 110 AR GI + ++ + ++ P L P L G+ Sbjct: 115 AQAREGQGIYESLEALAPAHPDYQALRSELVRRLTLVEA---PILVPPGEALSRGDQGPR 171 Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V LR RL G L FD +ESAV FQ RH L G STL +N Sbjct: 172 VDALRARLAQLGLLAGPVAAGAPFDGRLESAVMRFQTRHNLAADGEAGPSTLSELNAGDA 231 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 RI Q++ NL R + L ++G R++ VNI LEA ENG V ++G+ +TP+ Sbjct: 232 RRINQIRANLERWR-WLPAELGERHIRVNIADYRLEAWENGVVARTHETMIGQRYSRTPV 290 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-EKGKEVFVEEVDWN 289 ++ I NPYW+ P + Q+ + R +P Y ++D + G V + DW Sbjct: 291 FSEDMSIIEINPYWLTPSGLGQR-WLRTFRTNPAYALSQGYRLVDLDTGARVDPYQADWA 349 Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 S + Q PG NAM K F + +N Y+HDTP LF N R ++SGCVRV + Sbjct: 350 S---RRYRVIQAPGPNNAMGRVKFLFPNVHNVYIHDTPHRELFANAQRDDSSGCVRVEHP 406 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 +L +W+L WS + E + T ++L VPVH +Y +A S + ++F D+ Sbjct: 407 EELAIWILS-AEGWSAQAVREAFDSGDTRRIRLRHVVPVHILYFTAVSDEMGRVRFIHDV 465 Query: 410 YGLDNVHVGII 420 Y D + + Sbjct: 466 YDRDERLIAAL 476 >gi|294140768|ref|YP_003556746.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella violacea DSS12] gi|293327237|dbj|BAJ01968.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella violacea DSS12] Length = 482 Score = 362 bits (929), Expect = 9e-98, Method: Composition-based stats. Identities = 115/417 (27%), Positives = 186/417 (44%), Gaps = 21/417 (5%) Query: 6 KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDS 65 +IN+I +Y + L + + + +I ND F+A + Sbjct: 77 QINEIKITDSLYSHALLDLLAHIRSVKGGGEADDEVRLLEAINNDELAEFIASI------ 130 Query: 66 DIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLD 125 + S + +++ + I Y+ L WP + LG SS VQRLR L GDL+ Sbjct: 131 ---LPSYDEVSKIRRMIRVYKSQLDVN-WPTITQVNFKLGQSSKQVQRLRWMLTALGDLE 186 Query: 126 PS---KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 S + +D V +K FQ RHG+ SG +D ST +N+ R+ Q+Q NL R Sbjct: 187 NSELTRYRESIYDPMVIHGIKAFQRRHGIRVSGELDESTALVLNISPQRRVIQMQQNLWR 246 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ +Y+ +NIP SL+ G++ L VIVG+ TP++ +R+ R+ NP Sbjct: 247 W-LMMPPSPPKKYIKINIPDYSLQLFVLGELDLSMKVIVGKPSSPTPVMMTRVTRMTINP 305 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP-----PNFI 297 YW P SII+ +++ L +P YL + E+ V ++ P+ + Sbjct: 306 YWTPPSSIIRSELLPLNSTEPGYLNHKGFELHAVGKNEISVVKLTNMEPKQLKGLLTEYR 365 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 Q PGK NA+ + + + Y+HDTP LF+ + GC+R+ + L +L+ Sbjct: 366 LVQAPGKDNALGQVRFTIPNTQSIYLHDTPAKNLFDGEHLALSHGCIRLEKALALSEYLI 425 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 I+ + KT V L +P+ Y +AW +Q R DIY LD Sbjct: 426 SIHE--DSKEIQVALSGSKTRYVSLPDPMPIFITYQTAWVDNRGKLQLRPDIYHLDR 480 >gi|157375588|ref|YP_001474188.1| peptidoglycan binding domain-containing protein [Shewanella sediminis HAW-EB3] gi|157317962|gb|ABV37060.1| peptidoglycan-binding domain 1 protein [Shewanella sediminis HAW-EB3] Length = 465 Score = 361 bits (928), Expect = 9e-98, Method: Composition-based stats. Identities = 105/383 (27%), Positives = 177/383 (46%), Gaps = 7/383 (1%) Query: 36 LDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWP 95 L +R D+ + S P S + + + W Sbjct: 78 LKYFWQNKNIPNDANRLDD-TEDLYQRAISLEPTSSD--YLPVSNRLRYLLWLSEHYPWK 134 Query: 96 ELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 L I L G+ S+ + RL + GDLD + + + +++ FQ RHGL Sbjct: 135 PLVIGGWLKEGDYHKSIPEISFRLNMLGDLDSYDRNNKQLNRTLATSLLRFQRRHGLKQD 194 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 ++ TL +N R R L N ++ L + R++L+NIPA + V++ ++ Sbjct: 195 AIIGPETLRWLNASPKNRARLLANNFLKKSSYLA-SLDSRFLLINIPAFEMVLVDHDEIQ 253 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 L+S VIVG+ RQTP+L S+I+ ++ NP W +PR ++ +D++ +R++ Y+ N + Sbjct: 254 LKSRVIVGKPYRQTPMLSSQISNVVLNPSWRVPRRLLWRDLLPKVRENGSYITQRNFDVF 313 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 D KG + +W F +R Q PG+ N + K F + N Y+HDT + LF Sbjct: 314 DAKGVIIEKSPDEWQELAQGRFPYRLVQRPGEENTLGRYKFYFANDYNVYLHDTVDKSLF 373 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 R +SGC+RV N+ L W+ + + ++ V+ +KT L + VH VY Sbjct: 374 EESNRALSSGCIRVENVESLANWMASNLVRDKQTWVDMQVERQKTQWFSLDDSLAVHLVY 433 Query: 393 ISAWSPKDSIIQFRDDIYGLDNV 415 +AW + QFR+DIY ++ Sbjct: 434 WTAWIDSEGDSQFRNDIYNQNST 456 >gi|163759687|ref|ZP_02166772.1| hypothetical protein HPDFL43_10047 [Hoeflea phototrophica DFL-43] gi|162283284|gb|EDQ33570.1| hypothetical protein HPDFL43_10047 [Hoeflea phototrophica DFL-43] Length = 619 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 94/334 (28%), Positives = 146/334 (43%), Gaps = 21/334 (6%) Query: 102 LHLGNSSVSV----QRLRERLIISGDLDPSKGL-------SVAFDAYVESAVKLFQMRHG 150 L G S+ + + ++ S +L L +D + VK FQ G Sbjct: 286 LKPGQSNPELSNVMAAISKK--ASDELKAEHALLFASYAGKPEYDEELVQLVKDFQKELG 343 Query: 151 LDPSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 L P G+V +T AM + +I ++++ + R + L + R V +N PA + Sbjct: 344 LKPDGVVGPATRRAMVGITNADKIEKVRLAMERAR-WLPGVLASRRVFINQPAYTASYYN 402 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 GK L V+VG+ QT I + FNPYW +P+SII +M+ LR DP YL + Sbjct: 403 GGKQELSMRVVVGKRSNQTYFFDDEIELVEFNPYWGVPQSIIFNEMVPKLRNDPGYLDRS 462 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPP-NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 + GK V V+W++ RQ PG NA+ KI F + + YMHDTP Sbjct: 463 GYEVTIG-GKRVSSSNVNWSAVGAGSRVGVRQRPGSSNALGELKIMFPNSHAIYMHDTPS 521 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R + GC+R+++ + +L + I + + PV + +PV Sbjct: 522 KSLFERDTRAFSHGCIRLQDPRAMAAKVLGT----TVEDIGSYIAGGQHKPVDVPENIPV 577 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 H Y +AW + + + DIYG D I Sbjct: 578 HVAYFTAWPNETGAVSYYADIYGRDGYLRKAIDA 611 >gi|146300086|ref|YP_001194677.1| hypothetical protein Fjoh_2331 [Flavobacterium johnsoniae UW101] gi|146154504|gb|ABQ05358.1| Uncharacterized protein [Flavobacterium johnsoniae UW101] Length = 519 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 181/348 (52%), Gaps = 26/348 (7%) Query: 72 KETIAQTEKAIAFYQDILSRGGWPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPS 127 + + + + Y+ + W + P + L S ++ ++R RL + GDL Sbjct: 182 YDQYYKLQGVLKQYKKLEKSSKWKPIVAETPYKDLRPDAVSPTIAQVRTRLYLLGDLK-Q 240 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 S +D + V +++R+G P+ ++ ++ MN+PV +++ L +N+ RI+ + Sbjct: 241 DSKSDFYDRELMDGVMKYKVRNGFKPNYILAEEHIKEMNIPVSDKVKTLMLNMERIRAIS 300 Query: 188 EQ-KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + YVLVN+P+ L V+NGK+ L S+V VG +T I + +I+RI+F+PYW + Sbjct: 301 PELVNNDEYVLVNVPSYELIYVKNGKIELTSSVFVGSPLTKTTIFNGQIDRIVFSPYWTV 360 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P+SI+Q ++ + + DP YL + N+ M++ + RQ PG N Sbjct: 361 PQSIVQNELRSKIAADPNYLAEKNMEMVNGQ--------------------VRQKPGPDN 400 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 ++ K F + ++ YMHDTP LF+ R + GC+ V+ +L V +LKD P W++ Sbjct: 401 SLGLVKFMFPNSDDIYMHDTPSKTLFDFEKRTFSHGCINVKMAKELAVAMLKDYPEWTQA 460 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 I++ ++ + + KL+ +VP++ Y ++ ++ I F D+Y D Sbjct: 461 KIDKAMEGKVESSFKLSKKVPIYITYFTSLVNENGQIGFFQDVYEKDA 508 >gi|218678646|ref|ZP_03526543.1| hypothetical protein RetlC8_07084 [Rhizobium etli CIAT 894] Length = 396 Score = 359 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 165/388 (42%), Gaps = 24/388 (6%) Query: 55 FLARVDMGIDSDIPIISKE--TIAQTEKAIAFYQDILSRGGWPELPI---RPLHLGNSSV 109 L R+ + I S + + +A + G + + + L G SS Sbjct: 12 KLVRMSPDAGAYIASRSPDGPQFEALKAELAKLRA-ADGGNEERIVVSLDKLLKPGESSP 70 Query: 110 SVQRLRERLIISGDLD---------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + + + + G + S + + S V+ FQ GL G++ + Sbjct: 71 EIANIVKAIGKHGSETLKTDHAATLAAYTGSADYSPEIVSLVEDFQKERGLKADGVIGQA 130 Query: 161 TLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 T+ AM +I +L V + + + L + +G RYV++N PA +GK L Sbjct: 131 TVRAMTGGDSNASKIDKLDVAMEQAR-WLPEDLGSRYVMINQPAFMAYYHNDGKEQLSMR 189 Query: 219 VIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 V+VG + QT I + FNP+W +P+SII +M+ LR DP YL + + G Sbjct: 190 VVVGGKNNQTYFFDDEIETVEFNPFWGVPQSIIINEMLPKLRSDPNYLDQLGYEV-EVNG 248 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 V VDW N RQ P NA+ KI F + + YMHDTP F +R Sbjct: 249 HAVASSSVDWYG-STDNVSVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDMRA 307 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 + GCVR+ N + +L + + + + T + VK+ ++PV+ Y +AW Sbjct: 308 LSHGCVRLSNPRAMAAAVLGT----TVDDVAKQIATGQNHAVKVPQKIPVYVSYFTAWPN 363 Query: 399 KDSIIQFRDDIYGLDNVHVGIIPLPEDH 426 KD ++++ DD+YG D + Sbjct: 364 KDGVVEYFDDVYGRDAYVDKAFDTTSNA 391 >gi|157375514|ref|YP_001474114.1| hypothetical protein Ssed_2377 [Shewanella sediminis HAW-EB3] gi|157317888|gb|ABV36986.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3] Length = 483 Score = 358 bits (920), Expect = 9e-97, Method: Composition-based stats. Identities = 108/376 (28%), Positives = 174/376 (46%), Gaps = 12/376 (3%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLG 105 S+ + + R + + S + I + I Y+ + WP + LG Sbjct: 109 SVEQTKLLQAIKRDRLSEFIGTILPSFDEIYRLRNMIGEYKKKV-NVKWPTMSQYEFRLG 167 Query: 106 NSSVSVQRLRERLIISGDLDPS---KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 SS V++LR L GDL+ S + +D V +K FQ+RHGL+ +G +D T+ Sbjct: 168 QSSNEVKQLRWMLTQLGDLEHSELTRYREAIYDPMVIDGIKSFQLRHGLNVNGNLDKYTV 227 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 EA+NV R+ Q+Q NL R L + V +NIP L E G V L+ VI+G Sbjct: 228 EAINVTPLQRVEQMQRNLWRW-ITLSTPNAEKLVWINIPGYQLSIFEQGSVTLQMKVIIG 286 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID---EKGK 279 + TPIL + + ++ NP W P SII+ +++ L +P YL + K Sbjct: 287 KPSSPTPILSTYLTKLTINPSWRPPASIIKSELLPLNAAEPGYLNHKQFELHGVGLNKKH 346 Query: 280 EVFVEEVDWNSP--EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 + + +VD + Q PG+ NA+ + +R++ Y+HDTP LF VR Sbjct: 347 VIKLGDVDSKQLPTLLRQYRLVQAPGEDNALGKMRFTIVNRHSIYLHDTPAKQLFKRNVR 406 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 + GC+R+ I L +L++ +++ V T L++ +PV+ Y ++W Sbjct: 407 ALSHGCIRLEKPIALSSYLVETDER--ARELQKAVGGSGTRHFSLSSPIPVYITYHTSWV 464 Query: 398 PKDSIIQFRDDIYGLD 413 +Q R DIY LD Sbjct: 465 DAAGKLQVRPDIYNLD 480 >gi|294141900|ref|YP_003557878.1| hypothetical protein SVI_3129 [Shewanella violacea DSS12] gi|293328369|dbj|BAJ03100.1| conserved hypothetical protein [Shewanella violacea DSS12] Length = 615 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 98/462 (21%), Positives = 200/462 (43%), Gaps = 64/462 (13%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSD-----IPIISKE 73 ++ L+ ++ S L++ N I + D +A ++ +D + +S + Sbjct: 144 VITYATHLINGKVNPSTLEKTWNYDESII---KLDTIVAELNRHVDQRDVAQRLLSLSPQ 200 Query: 74 --TIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGL 130 Q + A+ Y+ + +P + + L G+ + ++ + +RLI L P + Sbjct: 201 LDAYTQLKSALKKYRLLADTADFPNIKYQGLIKAGSVTPTLALIADRLIQLNYLSPQADI 260 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 S + AV+ +Q H L G++ T+ ++NVP R Q+++N+ R + L Sbjct: 261 SN-YSHEFVGAVRAYQSSHSLQADGIIGKGTINSLNVPFAYRADQIRINMERAR-WLSSD 318 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 + Y+++N+ L ++G++ ++ +++G++ +TPI SRI+ ++ NP W +PRSI Sbjct: 319 LSQEYIIINLAGYELWMYKDGQLDWQTDIVIGKISSKTPIFKSRISYLVVNPTWTVPRSI 378 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI--FRQDPGKINAM 308 ++ +++DP Y+ + + D GK+V + +DW +P F F Q P K NA+ Sbjct: 379 -NPGLINKIKRDPSYIDKQHYMLKDSSGKKVDILAIDWQEVDPEKFKYWFVQKPWKNNAL 437 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH- 367 K F +R+ Y+HDTP LF+ R + GC+R++N ++L LL + + Sbjct: 438 GQVKFIFPNRDAIYLHDTPTKYLFSLTDRAFSHGCIRIKNPLELAEKLLNENRPATLEKN 497 Query: 368 ----------------------------------------------IEEVVKTRKTTPVK 381 +++ +T + Sbjct: 498 LQIQNNKLAKRREESQLNNLSTDQVSVAPRSEPLQSPLTQPSADELLKKTFALGETQKLY 557 Query: 382 LATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 L + + +Y +A + + F D+Y D + + P Sbjct: 558 LDEPMDILIMYWTA-ASSKGKLTFYHDVYKRDEPLMLQLKRP 598 >gi|192293029|ref|YP_001993634.1| peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris TIE-1] gi|192286778|gb|ACF03159.1| Peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris TIE-1] Length = 724 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 99/428 (23%), Positives = 171/428 (39%), Gaps = 45/428 (10%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK-E 73 ++ +H S + I H I + + + + Sbjct: 247 LTESMMDYARQAQSGRMHWSQVSADIQYPEHPIDPAQVLAKVTTAADASAALDSYNPPHK 306 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-------------RPLHLGNSSVSVQRLRERLII 120 + +K +A ++ G P + I + + V +LR RL + Sbjct: 307 LYRELKKKLA---ELRGEGDKPVIKIADGETLRYQPARKKRAEVKMDDPRVPQLRARLGV 363 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVN 179 + S +DA V +AV+ FQ L SG++D T++A+N P R I + VN Sbjct: 364 T-----ENPDSTTYDATVAAAVRKFQDHADLKASGVLDERTVKALNTPKRDRTIDTIIVN 418 Query: 180 LMRIKKLLEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV-DRQTPILHSR 234 + R + L +G YV++NIP +L+ +++G + V+ G+ TP+L Sbjct: 419 MERWRWLPRDLGAPSLGDAYVILNIPDYTLKVMQHGAEVWTTRVVTGKPGKHATPLLTET 478 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 + I NP W +P SII + + L+QDP L + + + + + Sbjct: 479 MKYITVNPTWNVPPSIIYNEYLPALQQDPTVLDRMGLKLERNRDGSIHIS---------- 528 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 Q PG+ NA+ + F ++ Y HDTP+ LF R + GC+RV+N Sbjct: 529 -----QPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAREERAFSHGCMRVQNPDVYAS 583 Query: 355 WLLKDTPTWSRYHIE--EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LL Y + R +K T +PV+ Y +A+ +Q R D+YG Sbjct: 584 TLLNIAMPEKDYTPAKVRAMYGRSEVDLKFPTPIPVNITYQTAFVDDAGKLQLRKDVYGR 643 Query: 413 DNVHVGII 420 D +G++ Sbjct: 644 DAAMLGLL 651 >gi|310815557|ref|YP_003963521.1| peptidoglycan binding domain-containing protein [Ketogulonicigenium vulgare Y25] gi|308754292|gb|ADO42221.1| peptidoglycan binding domain-containing protein [Ketogulonicigenium vulgare Y25] Length = 547 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 112/417 (26%), Positives = 184/417 (44%), Gaps = 20/417 (4%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 + +G +L + + +I + N + G S A Sbjct: 126 AVSLGQALHGGFLTPGRVISLIKRQAPQVDGVALLNAMTSQSAGAVLRALTPSDAQYAGL 185 Query: 79 EKAIAFYQDILSRGGWPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 +A A + GGW L LG+ +V LR RL++ G + PS LS F Sbjct: 186 MRARAQLDAAEAAGGWGGEVFAGAAGKLQLGDQGDAVLSLRNRLMLQGYMAPS--LSPVF 243 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D + V+ FQ HGL G+V + TL +N+ +D RI+Q+ V + R + + +G R Sbjct: 244 DQSLLLGVQAFQTAHGLATDGVVGAGTLAELNMGIDARIQQVLVAMERAR-WSNKPLGAR 302 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 ++ VN+ NG R+ ++G DR+TP +N ++ NP W +PRSI+ Sbjct: 303 HIWVNLADYHTVIRNNGMDEFRTRSVIGARGADRETPEFSDIMNHMVVNPSWHVPRSIVV 362 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMAS 310 + + L+++P + +I++ D G+ + +D+N+ NF F R+ P + NA+ Sbjct: 363 GEYLPQLQRNPYAVS--HINVQDGSGRAIDRSLIDFNAYNASNFPFSMREPPSRGNALGL 420 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F ++ N Y+HDTP LF R + GC+R+ + D LL + R + Sbjct: 421 VKFMFPNQWNIYLHDTPSKDLFARETRAFSHGCIRLADPFDFAYQLLGPQTSDPRGLFQR 480 Query: 371 VVKTRKTTPVKLA-------TEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + T + T V L +PVH Y + + FR DIYG D G + Sbjct: 481 TLDTGRETRVDLEQPLPVQPQPLPVHLDYRTTVIAPSGAVTFRRDIYGRDAAIWGAM 537 >gi|152990487|ref|YP_001356209.1| hypothetical protein NIS_0738 [Nitratiruptor sp. SB155-2] gi|151422348|dbj|BAF69852.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2] Length = 492 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 106/365 (29%), Positives = 175/365 (47%), Gaps = 14/365 (3%) Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP----LHLGNSSVSVQRL 114 + S I+ + + + Y++I RGGW + + L G V +L Sbjct: 123 LPPTKKSYDHILQNPYLDMLYEILNKYENIKKRGGWGVITLSNDYAYLLPGKKYDEVVQL 182 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 R RL+ G L +D ++ AV+ FQ RH L P G+V +TL+ +N V+ I Sbjct: 183 RWRLMQEGYLKDQNMTDTVYDENLKLAVEEFQRRHFLKPDGIVGPTTLKVLNESVESIIE 242 Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 ++ +N+ R++ L++ YV VNIP L +G + S VIVGR +R TP++ Sbjct: 243 KILINIERLRWYLQED--KSYVFVNIPQFRLFLWHDGDMVFDSKVIVGRKERPTPLMRHE 300 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDP-QYLKDNNI--HMIDEKGKEVFVEEVDWNSP 291 I+ + NPYW P++II +D++ L+ + L+ I + + + + + W++ Sbjct: 301 ISYAVLNPYWRAPKTIIAQDILPKLKAGKFEELEKEGIIASLDRYANETIPFDLIYWDAI 360 Query: 292 EPPNFI--FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNI 349 + F F Q PG N + K+ F ++ + Y+HDT LF R +SGCVRV Sbjct: 361 DLSTFPIVFLQKPGPKNFLGFVKLMFPNKYDVYLHDTNARDLFRYSYRALSSGCVRVEKP 420 Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 I+L + T S I + + +T V++ + PV+ +YI+ D I F DI Sbjct: 421 IELFHLV---EGTLSYREIFDRLWDHQTKKVRIHPKFPVYLMYITVMKEDDGNIYFYPDI 477 Query: 410 YGLDN 414 Y LD Sbjct: 478 YQLDR 482 >gi|39937248|ref|NP_949524.1| hypothetical protein RPA4188 [Rhodopseudomonas palustris CGA009] gi|39651106|emb|CAE29629.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] Length = 724 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 98/428 (22%), Positives = 170/428 (39%), Gaps = 45/428 (10%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK-E 73 ++ +H S + I H I + + + + Sbjct: 247 LTESMMDYARQAQSGRMHWSQVSADIQYPEHPIDPAQVLAKVTTAADASAALDSYNPPHK 306 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-------------RPLHLGNSSVSVQRLRERLII 120 + +K +A ++ G P + I + + V +LR RL + Sbjct: 307 LYRELKKKLA---ELRGEGDKPVIKIADGETLRYQPARKKRAEVKMDDPRVPQLRARLGV 363 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVN 179 + S +DA V +AV+ FQ L SG++D T++A+N P R I + VN Sbjct: 364 T-----ENPDSTTYDATVAAAVRKFQDHADLKASGVLDERTVKALNTPKRDRTIDTIIVN 418 Query: 180 LMRIKKLLEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV-DRQTPILHSR 234 + R + L +G YV++NIP +L+ +++G + V+ G+ TP+L Sbjct: 419 MERWRWLPRDLGAPSLGDAYVILNIPDYTLKVMQHGAEVWTTRVVTGKPGKHATPLLTET 478 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 + I NP W +P SII + + L+QDP L + + + + + Sbjct: 479 MKYITVNPTWNVPPSIIYNEYLPALQQDPTVLDRMGLKLERNRDGSIHIS---------- 528 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 Q PG+ NA+ + F ++ Y HDTP+ LF R + GC+RV+N Sbjct: 529 -----QPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAREERAFSHGCMRVQNPDVYAS 583 Query: 355 WLLKDTPTWSRYHIE--EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LL Y + R +K T +PV+ Y +A+ +Q R D+YG Sbjct: 584 TLLNIAMPEKDYTPAKVRAMYGRSEVDLKFPTPIPVNITYQTAFVDDAGKLQLRKDVYGR 643 Query: 413 DNVHVGII 420 D + ++ Sbjct: 644 DAAMLALL 651 >gi|59711764|ref|YP_204540.1| carboxypeptidase [Vibrio fischeri ES114] gi|59479865|gb|AAW85652.1| predicted carboxypeptidase [Vibrio fischeri ES114] Length = 515 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 92/350 (26%), Positives = 175/350 (50%), Gaps = 15/350 (4%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 S + + + + Y + R + N V + RL +SG+++ + Sbjct: 157 SSDQYEELYQRLFHYYQPYEDSESVFIKERLIRP-NQLTDVNAIIYRLQVSGEINHQEAD 215 Query: 131 ------SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 + +D+ + +K FQ RHGL G++ TL +N+ R+R + +N+ R++ Sbjct: 216 MLLRQSNDHYDSSLVLIIKEFQKRHGLKQDGIIGPKTLHWLNMTAKERVRIMALNIQRLR 275 Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + +VLVNIP+ + + G++ S VIVG+ +R+TPI +R+N I+FNP W Sbjct: 276 LW--ENKNSNFVLVNIPSYEMAYWQEGELVFTSKVIVGKPERRTPIFTTRLNAIVFNPEW 333 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK--GKEVFVEEVDWNSPEPPNFIF--RQ 300 +P I+++D++ + +L+ N +I + + ++++DW F + +Q Sbjct: 334 KVPTKIMREDILPKALNNKDFLQSQNFEIIPTWLSKEVISIDDIDWEQVNVETFPYKLKQ 393 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 G NA+ K +RN Y+HDTP LF+ R +SGC+RV + L+K++ Sbjct: 394 KSGNTNALGRYKFNTPNRNAIYLHDTPSRSLFSKQHRAYSSGCIRVEKASEFAQLLMKES 453 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 +S ++ + +T+ V L ++ V+ +Y ++W +D+ +QFR IY Sbjct: 454 -HFSTQDYKDYHELPETSKVSLDQQISVYTIYQTSWVGEDNQVQFRM-IY 501 >gi|327478928|gb|AEA82238.1| putative periplasmic protein [Pseudomonas stutzeri DSM 4166] Length = 526 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 110/382 (28%), Positives = 185/382 (48%), Gaps = 20/382 (5%) Query: 40 INESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR-------- 91 I + S D+ + + + + A+ A+ Y+D+ + Sbjct: 142 IEPIWRSPDAPEADDRQRLLQIAVQGLADLPGAFDRARPPHAL--YRDLRAAYARQRQAA 199 Query: 92 -GGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 W LP P L G LRE L+ + L + +D + AV+ FQ++H Sbjct: 200 LPAWRPLPSGPTLRPGMRDERSPLLRELLLAG--AGSAPALDLRYDDELVEAVRGFQLQH 257 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL+ G+V ++TL A+NV R+ QL++NL R++ + + + + +LV+I A L Sbjct: 258 GLEADGVVGAATLAALNVSPASRLDQLRINLERLR-WISRDLEPQSLLVDIAGARLIYFR 316 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 + ++ VGR RQTP L SRI+R+ NP W +P +I+++D + L+R+D YL + Sbjct: 317 DSCPFWQTRTQVGREARQTPPLKSRISRLTLNPTWTVPPTILKQDKLPLIREDIAYLARH 376 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + +ID +G V VDW P + RQD G N + I F + + Y+HDTP Sbjct: 377 QMRVIDAQGNAVDPYAVDWA--NPRGILLRQDAGPANPLGQVAIRFANPFSVYLHDTPSK 434 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF R +SGCVRV + + L LL+ R + ++++ +T +LA + P+ Sbjct: 435 PLFERAARAVSSGCVRVESALQLVDLLLE---ADERDTVARLLQSGETHEYRLARQTPIL 491 Query: 390 FVYISAWSPKDSIIQFRDDIYG 411 Y +A + + ++R DIY Sbjct: 492 MAYWTADADDSGLPRYRPDIYK 513 >gi|152993866|ref|YP_001359587.1| hypothetical protein SUN_2290 [Sulfurovum sp. NBC37-1] gi|151425727|dbj|BAF73230.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 566 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 112/365 (30%), Positives = 198/365 (54%), Gaps = 15/365 (4%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVSVQRLR 115 + ++S +P+ +++ + K + Y+ + +P++ PL LG+ S V+ ++ Sbjct: 180 NIHAYLNSLLPM--EKSYRRLVKRLENYRVMEK---FPKIKYSNDPLKLGDWSPRVKEVK 234 Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 +RL ISGD + + FD +E AVK +Q R+ L +G VD +T+ +N P I+ Sbjct: 235 KRLQISGDYPKNAPVDWKFDRRLEQAVKTYQKRYLLKITGQVDKTTMYYLNQPASKNIKA 294 Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 + VNL + K L + Y+ VN+P +L NG++ ++ ++VGR+DR TPI +I Sbjct: 295 IIVNLDKTK-LYPKHFENEYIAVNVPDFNLRYYRNGEMIFKTGIVVGRIDRPTPIFSDKI 353 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP- 294 ++ NP W IP ++I++D++ +LR++P YL++NNIH+ KE+ V + + E Sbjct: 354 EYMVINPTWTIPDNLIKRDLIHVLRENPAYLEENNIHVFSGN-KEITVTQEMLDPYEHSD 412 Query: 295 ---NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + F Q PG NA+ K F ++ + Y+HDT L + +SGC+RV D Sbjct: 413 KKVPYRFVQYPGDSNALGRIKFMFPNKYSVYLHDTDNKSLLTRRYKIYSSGCMRVDKPFD 472 Query: 352 LDVWLLKDTPT-WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 L LLK ++R I+ ++ T K ++L +PVH +Y + + +D + F++DIY Sbjct: 473 LMDILLKHAKGRYTREDIDAIIATDKPKTIRLKKAIPVHILYFTVF-EEDGLAYFKNDIY 531 Query: 411 GLDNV 415 D + Sbjct: 532 LYDKI 536 >gi|227822250|ref|YP_002826221.1| peptidoglycan binding protein, putative [Sinorhizobium fredii NGR234] gi|227341250|gb|ACP25468.1| peptidoglycan binding protein, putative [Sinorhizobium fredii NGR234] Length = 630 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 154/376 (40%), Gaps = 23/376 (6%) Query: 52 FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP---LHLGNSS 108 D D+ + ++ + + P + I P L G+++ Sbjct: 245 LDKAATSADVAALIEERNPKSPQFLALKQELERLR--AETDAAPRVEIAPGTLLKPGDNN 302 Query: 109 VSVQRLRE--RLIISGDLDPSKGL-------SVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + + +L S L + + + + S V+ FQ HGL G+V Sbjct: 303 PELANIVAGIKLKASEALKAEHAVVLAGYQGTPEYTPELVSLVEAFQKEHGLKADGVVGQ 362 Query: 160 STLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 +++ + +I +L++ + + + L +G RYV +N PA ++G Sbjct: 363 ASIRVLTGGDTTASKIDKLEIAMEQAR-WLPNDLGNRYVFINQPAFMAYYTDHGAEQFSM 421 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 V+VG QT H I + NPYW +P+SII +M+ LR DP YL + + Sbjct: 422 RVVVGSKANQTYFFHDEIQTVEVNPYWGVPQSIIVNEMLPKLRSDPSYLDRMGYQV-EVG 480 Query: 278 GKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 G+ V VDW + RQ P NA+ KI F + + YMHDTP F R Sbjct: 481 GRVVPSYAVDWYG-STNSVAVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDQR 539 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 + GCVR+ + +L S + + + + + +VPV+ Y +AW Sbjct: 540 ALSHGCVRLAEPRRMAAAVL----GVSMDDVGNEIAQGRNRALPVPQKVPVYVSYFTAWP 595 Query: 398 PKDSIIQFRDDIYGLD 413 KD +++ +D+Y D Sbjct: 596 NKDGKVEYFNDVYERD 611 >gi|110633909|ref|YP_674117.1| hypothetical protein Meso_1556 [Mesorhizobium sp. BNC1] gi|110284893|gb|ABG62952.1| conserved hypothetical protein [Chelativorans sp. BNC1] Length = 661 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 91/384 (23%), Positives = 156/384 (40%), Gaps = 24/384 (6%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP---LHLGNSSVSV 111 + + E + + + E+ I P + G S Sbjct: 250 LASSAEPATYLQSLHPQNELFNALRDELKKLRTEAEQEK-EEIVIAPDILVRPGASHPDF 308 Query: 112 QRLRERLIIS-----------GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 ++ L I G + + S + + +K Q +H L P G+V Sbjct: 309 SKVL--LAIESKADDDFRAEHGAVLTAHLGSQTYAEELIPIIKAVQRQHKLSPDGIVGQR 366 Query: 161 TLEAMNV-PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 T+ A+ RI ++ +++ R++ +G V++N+P+ + ENG L Sbjct: 367 TVRALTGESASSRIEKVLLSMERLR-WQPSYLGSARVMINVPSFTASYFENGTEKLSMRA 425 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 +VG+ QT H I + FNPYW +PRSII +M+ LR+DP YL + D +G+ Sbjct: 426 VVGQSSSQTYFFHDEIEYVEFNPYWGVPRSIIVNEMLPKLRRDPGYLDRAGYEVFDSRGR 485 Query: 280 EVFVEEVDWNSPEPP-NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 V ++W + RQ PG NA+ KI F + ++ YMHDTP+ LF R Sbjct: 486 RVASSAINWAVYGANVPYGVRQPPGASNALGRLKIMFPNSHDIYMHDTPQKSLFARDSRA 545 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 + GCVR+ + + +L S + + + + +++PV+ Y +AW Sbjct: 546 FSHGCVRLEDPGAMAAAVL----GISSEEVAAEINKGRNMRRNVPSKIPVYVGYFTAWPE 601 Query: 399 KDSIIQFRDDIYGLDNVHVGIIPL 422 I + DIY D + Sbjct: 602 TSGSISYHADIYERDAHLKKALSR 625 >gi|148558873|ref|YP_001258930.1| cell wall degradation protein [Brucella ovis ATCC 25840] gi|148370130|gb|ABQ60109.1| cell wall degradation protein [Brucella ovis ATCC 25840] Length = 656 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 100/414 (24%), Positives = 173/414 (41%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 236 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 294 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 295 QYAALKRALADTE--PPRGKPIRISFDGGIKPGDKSEQLSKVVALISRHVPADYLAQHRD 352 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 353 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 412 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT + ++ ++FNP Sbjct: 413 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYDKVQTVVFNP 471 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 472 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 530 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 531 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 590 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 591 VKNLDKYF-----GKDERDIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 639 >gi|153009554|ref|YP_001370769.1| peptidoglycan-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151561442|gb|ABS14940.1| Peptidoglycan-binding domain 1 protein [Ochrobactrum anthropi ATCC 49188] Length = 668 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 99/415 (23%), Positives = 171/415 (41%), Gaps = 27/415 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDR-FDNFLARVDMGIDSDIPIISKET 74 L + E + A L + + + + + D S E Sbjct: 248 SARALRYAIDAGEGRVIADRLSGFHDLPRNRVDPKAVLEKLASESDPAAYLHGFQPSNEQ 307 Query: 75 IAQTEKAIAFYQDILSRGGWPELPI---RPLHLGNSSVS---VQRLRERLIISGDLDP-- 126 A ++ +A + I + G+++ V L R +G L Sbjct: 308 YAALKRELAN----TEPPSAEPIRISLNGIIKPGDTNDQLSKVVALISRHAPAGYLAQHK 363 Query: 127 ----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL-RIRQLQVNLM 181 + +D + SA+K +Q G P G++ +TL A+ + ++ ++ Sbjct: 364 QVLDTHASGDVYDPELVSAIKDYQKLSGSTPDGVIGRNTLSALQGEQSSIKRDRILYSME 423 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R++ L G RYV+VN PA E E+GK L V++G QT ++++ ++FN Sbjct: 424 RLR-WLPHDFGTRYVMVNQPAYRAEYFEDGKEKLAMNVVIGSPTHQTYFFYNKVQTVVFN 482 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFR 299 P W +PRSII +M+ + +D YL N + GK+V V+W++ R Sbjct: 483 PSWGVPRSIILNEMLPKVMRDTSYLDRNGYEVYAG-GKKVSASAVNWSAVAAGKAHVGIR 541 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q P NA+ KI F + ++ YMHDTP F+ +R + GC+R+ D+ +L Sbjct: 542 QKPSLDNALGELKILFPNAHDIYMHDTPAKSYFSRDMRALSHGCIRLERPRDMAAAVLGT 601 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + T + + +K+ VPV Y +AW D I + D+Y D+ Sbjct: 602 SVTDLEKYF-----GKNERGIKVKEPVPVFISYFTAWPEADGKIHYYGDVYDRDS 651 >gi|192359326|ref|YP_001983485.1| cell wall degradation protein [Cellvibrio japonicus Ueda107] gi|190685491|gb|ACE83169.1| cell wall degradation protein [Cellvibrio japonicus Ueda107] Length = 746 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 101/298 (33%), Positives = 151/298 (50%), Gaps = 4/298 (1%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 P+ FD Y+ AVK FQ L+ G + +T A+NV R+ Q++VNL R + Sbjct: 450 PAINPDEVFDEYLVEAVKTFQREQYLEVDGAIGPATRAALNVSAKTRLEQIRVNLDRARW 509 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 LL + VLV+I + + + RS V VG R +P+ S +N I NP W Sbjct: 510 LL-HSIPPEMVLVDIAGFKVTYFKASQPIWRSRVQVGMAYRTSPLFRSEVNYITLNPTWT 568 Query: 246 IPRSIIQKDMMALLRQ-DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +P +I++KD++ LR+ D YL+DN I +++ +G+E+ +DW P RQD G Sbjct: 569 VPPTILRKDILPKLRKGDLSYLRDNRIRVLNRQGQELDPASIDWQ--RPGAITLRQDAGP 626 Query: 305 INAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 A+ I F + + Y+HDTP LF R +SGC+RV ++L LL DTP W Sbjct: 627 KAALGKAVIRFPNSHAVYLHDTPHQRLFEKSQRAFSSGCIRVERALELVQLLLSDTPGWD 686 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 IE+ + T T V LA VP+ Y +A + + F+ DIY D V + + Sbjct: 687 AAAIEKALATGNTRNVILARRVPILLAYWTADVIDEHKVVFKPDIYARDPVLLAALNR 744 Score = 59.8 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + + Y+ ++ GGWP L P L + LR RL +SG+ P Sbjct: 310 YSGLRAGLLRYRQLVDDGGWPALESGPTLKPCMIDPLIAVLRRRLAVSGEYQPPVADQRP 369 Query: 134 FDAYVESA 141 + ++SA Sbjct: 370 ASSSLDSA 377 >gi|262171698|ref|ZP_06039376.1| hypothetical protein VII_002521 [Vibrio mimicus MB-451] gi|261892774|gb|EEY38760.1| hypothetical protein VII_002521 [Vibrio mimicus MB-451] Length = 522 Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats. Identities = 91/321 (28%), Positives = 159/321 (49%), Gaps = 14/321 (4%) Query: 103 HLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G+ L RL + D+ + +D + +K FQ HGL P G++ T Sbjct: 200 RPGDPLTHRDALLRRLSLVNLDVTDVRDDITFYDQTLVKPIKQFQNMHGLKPDGVIGPET 259 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 ++ +N V R+ L +N RI+ Q+ ++VN+P ++ ++G+ + V+V Sbjct: 260 MKWLNKSVTERLALLALNAERIRLWSTQQ--GTVIVVNVPGFEMKYWDSGREVFGAKVVV 317 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--K 279 GRV R TP+++++++ ++ NP W +PR I+ +D++ ++++D +YL + I +I + Sbjct: 318 GRVTRPTPVMNTKLDSLIINPTWNVPRKIMVEDILPMVKRDSEYLARHQIEIIRSWSDPE 377 Query: 280 EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 + + +DW+S P F + RQ G NA+ K + Y+HDTP LFNNV R Sbjct: 378 VLDPQLIDWSSINPETFPYRMRQQAGVQNALGMYKFNTPNSRAIYLHDTPSKHLFNNVSR 437 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGC+RV N LL+ I T + L +PV +Y + W Sbjct: 438 AFSSGCIRVENAQKFAQTLLEQQG------IVLNELPAYTQAIALKKRIPVQIIYQTVWY 491 Query: 398 PKDSIIQFRDDIYGLDNVHVG 418 + +Q+RDDIY D+ + Sbjct: 492 -EGGALQYRDDIYRYDSSSIS 511 >gi|258624450|ref|ZP_05719397.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258583297|gb|EEW08099.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 522 Score = 355 bits (911), Expect = 9e-96, Method: Composition-based stats. Identities = 91/321 (28%), Positives = 158/321 (49%), Gaps = 14/321 (4%) Query: 103 HLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G+ L RL + D+ + +D + +K FQ HGL P G++ T Sbjct: 200 RPGDPLTHRDALLRRLSLVNLDVTDVRDDITFYDQTLVKPIKQFQSMHGLKPDGVIGPET 259 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 ++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ + V+V Sbjct: 260 MKWLNKSVTERLALLALNAERIRLWSTQQ--GTVIVVNVPGFEMKYWDAGREVFGAKVVV 317 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--K 279 GRV R TP+++++++ ++ NP W +PR I+ +D++ ++++D +YL + I +I + Sbjct: 318 GRVTRPTPVMNTKLDSLIINPTWNVPRKIMVEDILPMVKRDSEYLARHQIEIIRSWSDPE 377 Query: 280 EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 + + +DW+S P F + RQ G NA+ K + Y+HDTP LFNNV R Sbjct: 378 VLDPQLIDWSSINPETFPYRMRQQAGVQNALGMYKFNTPNSRAIYLHDTPSKHLFNNVSR 437 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGC+RV N LL+ I T + L +PV +Y + W Sbjct: 438 AFSSGCIRVENAQKFAQTLLEQQG------IVLNELPAYTQAIALKKRIPVQIIYQTVWY 491 Query: 398 PKDSIIQFRDDIYGLDNVHVG 418 + +Q+RDDIY D+ + Sbjct: 492 -EGGALQYRDDIYRYDSSSIS 511 >gi|256061060|ref|ZP_05451216.1| cell wall degradation protein [Brucella neotomae 5K33] Length = 670 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 100/414 (24%), Positives = 174/414 (42%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 250 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 308 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 309 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 366 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 367 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 426 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 427 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 485 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 486 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 544 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 545 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 604 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 605 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 653 >gi|163751738|ref|ZP_02158956.1| hypothetical protein KT99_12214 [Shewanella benthica KT99] gi|161328390|gb|EDP99549.1| hypothetical protein KT99_12214 [Shewanella benthica KT99] Length = 453 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 105/372 (28%), Positives = 170/372 (45%), Gaps = 12/372 (3%) Query: 51 RFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVS 110 + + ++ + S + + + I Y+ L WP + LG SS Sbjct: 84 KLLEAINNAELSAYIASILPSYNEVLRIRRMIRVYKTQLDM-DWPSVTRVNFKLGQSSQQ 142 Query: 111 VQRLRERLIISGDLDPS---KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 VQRLR L + GDL+ S + +D V +K FQ RHGL +G +D+ T++A+N+ Sbjct: 143 VQRLRWMLTVLGDLENSELTRYREAIYDPMVIQGIKSFQRRHGLTANGELDAPTVQALNI 202 Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 R+ Q+Q NL R +L +Y+ +NIP SLE G++ L VIVG+ Sbjct: 203 SPKRRVIQMQQNLWRW-IMLPSSPPPKYIKINIPNYSLELFVLGELDLSMKVIVGKPSSP 261 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH---MIDEKGKEVFVE 284 TP+L +R+ R+ NPYW P SII+ +++ L ++P YL + + V + Sbjct: 262 TPVLLTRVTRMTINPYWTPPTSIIRSELLPLNSREPGYLNHKGFELHPVAKKDNPVVKLI 321 Query: 285 EVDWNSPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 + + Q PGK NA+ + + + Y+HDTP+ LF + G Sbjct: 322 NIAPRQLAELLKEYRLVQAPGKDNALGKLRFTIPNTESIYLHDTPQKKLFAGNDLALSHG 381 Query: 343 CVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 C+R+ + L ++L + I + T V L+ +P+ Y +AW Sbjct: 382 CIRLEKAVALFEYILSTQ--DNAEEIRRALGQPNTRYVSLSNAIPIFITYQTAWVDSRGK 439 Query: 403 IQFRDDIYGLDN 414 +Q R DIY LD Sbjct: 440 LQLRPDIYHLDR 451 >gi|261325062|ref|ZP_05964259.1| peptidoglycan binding domain-containing protein [Brucella neotomae 5K33] gi|261301042|gb|EEY04539.1| peptidoglycan binding domain-containing protein [Brucella neotomae 5K33] Length = 666 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 100/414 (24%), Positives = 174/414 (42%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 246 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 304 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 305 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 362 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 363 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 422 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 423 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 481 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 482 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 540 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 541 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 600 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 601 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 649 >gi|115526100|ref|YP_783011.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115520047|gb|ABJ08031.1| Peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris BisA53] Length = 705 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 102/429 (23%), Positives = 172/429 (40%), Gaps = 43/429 (10%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARV---DMGIDSDIPIIS 71 +L +H S + I H I + + P Sbjct: 229 LTASMLDYARQAQSGRMHWSQVSSDILYPEHPIDPAEVLANVTNAKDPSAALAGYNPP-- 286 Query: 72 KETIAQTEKAIAFYQD--------ILSRGGWPELPIRPLH--LGNSSVSVQRLRERLIIS 121 + + + +A + I +P R + V +LR +L I+ Sbjct: 287 HKLYRELKAKLAELRGQGDGPVVTIAEGPALKYVPARKKQAAIEVDDPRVPQLRAKLGIT 346 Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNL 180 S +DA V +AV+ FQ + +G++D T++A+N P R I + VN+ Sbjct: 347 -----ENADSTKYDAKVAAAVRKFQDATDIPVTGVLDDRTVKALNSPKRDRQIDIVVVNM 401 Query: 181 MRIKKLLEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV-DRQTPILHSRI 235 R + L Q +G YV++N+P +L+ ++N + V+ G+ TP+L + Sbjct: 402 ERWRWLPRQLGASSLGNAYVILNVPDFTLKVMQNDAAVWTTRVVTGKPGKHATPMLTETM 461 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 I NP W +P SII + + L+QDP L + + + + + Sbjct: 462 KYITVNPTWNVPPSIIYNEYLPALQQDPTVLDRMGLKLERNRDGSIHIS----------- 510 Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 Q PG+ NA+ + F ++ Y HDTP+ LF R + GC+RV+N Sbjct: 511 ----QPPGERNALGRIRFNFPNKFLVYQHDTPDKHLFARDERAFSHGCMRVQNPDQYAAT 566 Query: 356 LLKDTPTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 LL T RY E + + R +K T +PV+ Y +A+ +Q R DIYG D Sbjct: 567 LLNITMPNERYSPERIRGMYGRSEIDLKFPTPIPVNITYQTAFVDDSGKLQIRKDIYGRD 626 Query: 414 NVHVGIIPL 422 +G++ Sbjct: 627 AAMIGLLRN 635 >gi|146280663|ref|YP_001170816.1| putative periplasmic protein [Pseudomonas stutzeri A1501] gi|145568868|gb|ABP77974.1| putative periplasmic protein [Pseudomonas stutzeri A1501] Length = 495 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 110/382 (28%), Positives = 188/382 (49%), Gaps = 20/382 (5%) Query: 40 INESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR-------- 91 I + S D+ + + + + + A+ A+ Y+D+ + Sbjct: 111 IEPIWRSPDAPEADDRQRLLQIAVQGLADLPTAFDRARPPHAL--YRDLRAAYARQRQAA 168 Query: 92 -GGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 W LP P L G LRE L+ + L + +D + AV+ FQ++H Sbjct: 169 LPAWRPLPSGPTLRPGMRDERSPLLRELLLAG--AGSTPALDLRYDDELVEAVRGFQLQH 226 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL+ G+V ++TL A+NV R+ QL++NL R++ + + + + +LV+I A L Sbjct: 227 GLEADGVVGAATLVALNVSPASRLDQLRINLERLR-WISRDLEPQSLLVDIAGARLIYFR 285 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 + ++ VGR RQTP+L SRI+R+ NP W +P +I+++D + L+R+D YL + Sbjct: 286 DSCPFWQTRTQVGREARQTPLLKSRISRLTLNPTWTVPPTILKQDKLPLIREDIAYLARH 345 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + +ID +G V VDW P + RQD G N + I F + + Y+HDTP Sbjct: 346 QMRVIDAQGNAVDPYAVDWA--NPRGILLRQDAGPANPLGQVAIRFANPFSVYLHDTPSK 403 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF R +SGCVRV + + L LL++ R + ++++ +T +LA + P+ Sbjct: 404 PLFERAARAVSSGCVRVESALQLVDLLLEED---ERDTVARLLQSGETHEYRLARQTPIL 460 Query: 390 FVYISAWSPKDSIIQFRDDIYG 411 Y +A + + ++R DIY Sbjct: 461 MAYWTADADDSGLPRYRPDIYK 482 >gi|294852310|ref|ZP_06792983.1| cell wall degradation protein [Brucella sp. NVSL 07-0026] gi|294820899|gb|EFG37898.1| cell wall degradation protein [Brucella sp. NVSL 07-0026] Length = 666 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 100/414 (24%), Positives = 174/414 (42%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 246 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 304 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 305 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 362 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 363 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 422 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 423 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 481 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 482 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 540 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 541 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMATAVLGTS 600 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 601 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 649 >gi|258620190|ref|ZP_05715229.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258587548|gb|EEW12258.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 522 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 91/321 (28%), Positives = 158/321 (49%), Gaps = 14/321 (4%) Query: 103 HLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G+ L RL + D+ + +D + +K FQ HGL P G++ T Sbjct: 200 RPGDPLTHRDALLRRLSLVNLDVTDVRDDITFYDQTLVKPIKQFQNMHGLKPDGVIGPET 259 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 ++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ + V+V Sbjct: 260 MKWLNKSVTERLALLALNAERIRLWSTQQ--GTVIVVNVPGFEMKYWDAGREVFGAKVVV 317 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--K 279 GRV R TP+++++++ ++ NP W +PR I+ +D++ ++++D +YL + I +I + Sbjct: 318 GRVTRPTPVMNTKLDSLIINPTWNVPRKIMVEDILPMVKRDSEYLARHQIEIIRSWSDPE 377 Query: 280 EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 + + +DW+S P F + RQ G NA+ K + Y+HDTP LFNNV R Sbjct: 378 VLDPQLIDWSSINPETFPYRMRQQAGVQNALGMYKFNTPNSRAIYLHDTPSKHLFNNVSR 437 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGC+RV N LL+ I T + L +PV +Y + W Sbjct: 438 AFSSGCIRVENAQKFAQTLLEQQG------IVLNELPAYTQAIALKKRIPVQIIYQTVWY 491 Query: 398 PKDSIIQFRDDIYGLDNVHVG 418 + +Q+RDDIY D+ + Sbjct: 492 -EGGALQYRDDIYRYDSSSIS 511 >gi|150396784|ref|YP_001327251.1| hypothetical protein Smed_1575 [Sinorhizobium medicae WSM419] gi|150028299|gb|ABR60416.1| conserved hypothetical protein [Sinorhizobium medicae WSM419] Length = 631 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 94/380 (24%), Positives = 162/380 (42%), Gaps = 27/380 (7%) Query: 52 FDNFLARVDMGIDSDIPIISKE----TIAQTEKAIAFYQDILSRGGWPELPIRP---LHL 104 FL +++ D I S+ + + + + P + I P L Sbjct: 243 LLAFLEKIEASGDVAALIESRNPKSAQFEALRQELERLRTQVEAT--PRVEIAPGTLLKP 300 Query: 105 GNSSVSVQRLRE--RLIISGDLDPSKGL-------SVAFDAYVESAVKLFQMRHGLDPSG 155 G S+ + + +L S L + + + + V+ FQ HGL G Sbjct: 301 GESNPELANVIAGIKLKASDALKTEHAVVLAAYGGTPDYTPELVPVVEAFQKEHGLKADG 360 Query: 156 MVDSSTLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 +V +++ A+ + +IR++++ + + + L +G RYV +N PA + E G Sbjct: 361 IVGQASIRAITGGDTIGEKIRKIEIAMEQAR-WLPDGLGDRYVFINQPAFTASYTEQGAE 419 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 V+VG QT I + NPYW +P+SII +M+ LR DP YL + Sbjct: 420 QFSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRSDPGYLDRMGYQV 479 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 + G+ V V+W + RQ P NA+ KI F + + YMHDTP F Sbjct: 480 -EVGGRVVSSTAVNWYG-STNSIAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFK 537 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 R + GCVR+ + + +L S + E + + + ++ +VPV+ Y Sbjct: 538 RDQRALSHGCVRLADPRRMAAAVL----GVSVDEVGEEISGGRNKALPVSAKVPVYVSYF 593 Query: 394 SAWSPKDSIIQFRDDIYGLD 413 +AW KD +++ +D+Y D Sbjct: 594 TAWPNKDGTVEYFNDVYERD 613 >gi|161618916|ref|YP_001592803.1| peptidoglycan binding domain-containing protein [Brucella canis ATCC 23365] gi|161335727|gb|ABX62032.1| Peptidoglycan-binding domain 1 protein [Brucella canis ATCC 23365] Length = 510 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 101/414 (24%), Positives = 174/414 (42%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 90 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 148 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 149 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPANYLAQHRD 206 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 207 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 266 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT +++I ++FNP Sbjct: 267 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKIQTVVFNP 325 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 326 SWGVPRSIILNEMLPKVMRDTSYLDRNGYKVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 384 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 385 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 444 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 445 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 493 >gi|254704262|ref|ZP_05166090.1| cell wall degradation protein [Brucella suis bv. 3 str. 686] Length = 670 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 100/414 (24%), Positives = 174/414 (42%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 250 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 308 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 309 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPANYLAQHRD 366 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 367 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 426 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 427 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 485 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 486 SWGVPRSIILNEMLPKVMRDTSYLDRNGYKVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 544 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 545 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 604 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 605 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 653 >gi|54309189|ref|YP_130209.1| amidase [Photobacterium profundum SS9] gi|46913621|emb|CAG20407.1| hypothetical amidase [Photobacterium profundum SS9] Length = 578 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 97/339 (28%), Positives = 169/339 (49%), Gaps = 19/339 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGL------SVAFDAYVESAVKLFQMRHGLDPSG 155 + G++ V+ + L + L D+ ++ ++ + A+K FQ R+GL G Sbjct: 239 IRKGDAIVAGKELAKVLFDLNDMTEAEYTFITQMPTITNSGTMLEAIKRFQRRNGLADDG 298 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 ++ ++T + +P R++ VN+ R + + ++ VNIP L+ E G V Sbjct: 299 IIGAATTAQLVMPYTDIARRVAVNIQRFRNI-NVIDNQPHIWVNIPDYMLKIFEQGNVIF 357 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 S VIVGR R T + S IN ++ NP W +P +I +KD++ ++ YL +N+ +++ Sbjct: 358 ESKVIVGRTSRPTNLFSSAINTMVVNPTWNVPETIKRKDVIPKVKHSRDYLTAHNMRILN 417 Query: 276 EKG--KEVFVEEVDWNSPEPPNFI--FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 E+ +++DW+S P F F+Q PG N++ K + + Y+HDTP L Sbjct: 418 SWRDRTEIPADQIDWSSVNPKTFPHEFQQGPGPSNSLGRVKFLMPNDYSIYLHDTPARGL 477 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 FN R +SGCVRV DL +++ + ++K V+L+ + V FV Sbjct: 478 FNKTKRNLSSGCVRVEKAYDLANFIIDFQKRKNIESFNAMLKDGDLDTVRLSQRLGVDFV 537 Query: 392 YISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPIDS 430 Y++AW + + +Q R+DIYG D+ P+ IDS Sbjct: 538 YLTAWIDEKNTLQMREDIYGYDS--------PQKEAIDS 568 >gi|262165524|ref|ZP_06033261.1| hypothetical protein VMA_001971 [Vibrio mimicus VM223] gi|262025240|gb|EEY43908.1| hypothetical protein VMA_001971 [Vibrio mimicus VM223] Length = 522 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 91/321 (28%), Positives = 158/321 (49%), Gaps = 14/321 (4%) Query: 103 HLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G+ L RL + D+ + +D + +K FQ HGL P G++ T Sbjct: 200 RPGDPLTHRDALLRRLSLVNLDVTDVRDDITFYDQTLVKPIKQFQNMHGLKPDGVIGPET 259 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 ++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ + V+V Sbjct: 260 MKWLNKSVTERLALLALNAERIRLWSTQQ--GTVIVVNVPGFEMKYWDAGREVFGAKVVV 317 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG--K 279 GRV R TP+++++++ ++ NP W +PR I+ +D++ ++++D +YL + I +I + Sbjct: 318 GRVTRPTPVMNTKLDSLIINPTWNVPRKIMVEDILPMVKRDSEYLARHQIEIIRSWSDPE 377 Query: 280 EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 + + +DW+S P F + RQ G NA+ K + Y+HDTP LFNNV R Sbjct: 378 VLDPQLIDWSSINPETFPYRMRQQAGVQNALGMYKFNTPNSRAIYLHDTPSKHLFNNVSR 437 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 +SGC+RV N LL+ I T + L +PV +Y + W Sbjct: 438 AFSSGCIRVENAQKFAQTLLEQQG------IVLNELPAYTQAIALKKRIPVQIIYQTVWY 491 Query: 398 PKDSIIQFRDDIYGLDNVHVG 418 + +Q+RDDIY D+ + Sbjct: 492 -EGGALQYRDDIYRYDSSSIS 511 >gi|90410380|ref|ZP_01218396.1| hypothetical amidase [Photobacterium profundum 3TCK] gi|90328621|gb|EAS44905.1| hypothetical amidase [Photobacterium profundum 3TCK] Length = 578 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 92/330 (27%), Positives = 164/330 (49%), Gaps = 11/330 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGL------SVAFDAYVESAVKLFQMRHGLDPSG 155 + G+ V+ + L + L D+ ++ +V + A+K FQ RHGL G Sbjct: 239 IRKGDVIVAGKDLAKVLFDLNDMTEAEYAFITQMPTVTNSGTMLEAIKRFQRRHGLADDG 298 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 ++ ++T + +P R++ +N+ R + + ++ VNIP L+ + G V Sbjct: 299 LIGAATTAQLVMPYTDIARRIALNMQRFRNI-NMIDNQPHIWVNIPDYMLKIFDQGNVIF 357 Query: 216 RSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID 275 S VIVGR R T + S IN ++ NP W +P +I +KD++ ++ YL +N+ +++ Sbjct: 358 ESKVIVGRTSRPTNLFSSAINTMVVNPTWNVPETIKRKDVIPKVKHSRDYLTAHNMRILN 417 Query: 276 EKG--KEVFVEEVDWNSPEPPNFI--FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 E+ +++DW++ P F F+Q PG N++ K + + Y+HDTP L Sbjct: 418 SWRDRTEIPADQIDWSNVNPKTFPHEFQQGPGPSNSLGRVKFLMPNDYSIYLHDTPARGL 477 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 FN R +SGCVRV DL +++ + ++ V+L+ + V FV Sbjct: 478 FNKSKRNLSSGCVRVEKAYDLANFIIDFQKRKNIEPFNAMLNDGDLDTVRLSQRLGVDFV 537 Query: 392 YISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 Y++AW + + +Q R+DIYG D+ +I Sbjct: 538 YLTAWVDEKNTLQMREDIYGYDSQQKDVID 567 >gi|94968926|ref|YP_590974.1| hypothetical protein Acid345_1899 [Candidatus Koribacter versatilis Ellin345] gi|94550976|gb|ABF40900.1| conserved hypothetical protein [Candidatus Koribacter versatilis Ellin345] Length = 561 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 107/365 (29%), Positives = 176/365 (48%), Gaps = 13/365 (3%) Query: 75 IAQTEKAIAFYQDILSRGGWP--ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK---G 129 T +A+ Y + + LP+ ++ G + L +RL GDLDP Sbjct: 198 YEATRQAMLQYTQLAKQPDTEKLPLPVGVVYQGGYYDHMPALAKRLQQLGDLDPKVIILA 257 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 ++ +D + V FQ RHGL G + S T++A+N+P+ R+ QL++ L R + + Q Sbjct: 258 DAIKYDDPLMGGVAHFQSRHGLPNDGNLTSDTIDALNIPIADRLEQLKLALERYRWIRYQ 317 Query: 190 KMGLRYVLVNIPAASLEAVEN-GKVGLRSTVIVGRV-DRQTPILHSRINRIMFNPYWVIP 247 V+VN+P L + G L V VG D QTPI I I+F PYW + Sbjct: 318 FTSPP-VVVNVPEFKLFGYDGSGTQILSMGVNVGDAFDFQTPIFEGDIRYIVFRPYWYVT 376 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD---WNSPEPPNFIFRQDPGK 304 +I + +M+ + +D YL+ N + ++D+ GK + + + ++ RQ PG Sbjct: 377 PTIQRDEMVPSVEEDRTYLEQNEMEVVDKDGKVIASGAISDAVLKHLKNGSYSIRQRPGA 436 Query: 305 INAMASTKIEFYSRNNTYMHDTPE-PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 NA+ KI F + +N Y+HDTPE +F+ R + GC+ + DL WLL+D W Sbjct: 437 DNALGLVKIIFPNSHNVYLHDTPEFKTMFSKAPRALSHGCIHLEKPADLAYWLLRDKTDW 496 Query: 364 SRYHIEEVVKTR-KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 S ++E ++ + V L VP+ +Y++A + + +QF DIYG D + Sbjct: 497 SLDKVKEAMQHGRDNSSVTLTKPVPILILYVTARAQTNGTVQFFKDIYGHDVELKAALAK 556 Query: 423 PEDHP 427 +P Sbjct: 557 GYPYP 561 >gi|329890356|ref|ZP_08268699.1| putative peptidoglycan binding domain protein [Brevundimonas diminuta ATCC 11568] gi|328845657|gb|EGF95221.1| putative peptidoglycan binding domain protein [Brevundimonas diminuta ATCC 11568] Length = 518 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 105/430 (24%), Positives = 174/430 (40%), Gaps = 39/430 (9%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF--DNFLARVDMGIDSDIPIISKE 73 L L E + ++E+ +S+ R D A +P + Sbjct: 110 TAAALAYAKVLSEGRVRPETVEELWEMQKNSVDLPRGLVDAVAANKLSQWFDALP-PTDL 168 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGL-- 130 A Y+ I +GGWP I + G S + L RL GDL + Sbjct: 169 GYTNLSAGYARYRRIARQGGWPAFRIGGTIEPGTSDPRIPALVARLAAEGDLSAAAAERL 228 Query: 131 --SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 ++A+ +E AV+ FQ RHGL G + +T ++ + R RQ+ +NL R ++ L+ Sbjct: 229 KGNLAYGPELEQAVRSFQTRHGLGSDGRIGGATQRSLTATAEDRARQIALNLER-RRWLK 287 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + + + VN AA + ++GK + V+VG QTP L ++ NP W +P Sbjct: 288 RDLNPERIEVNTAAAIMVYWKDGKPVHSNRVVVGTAANQTPSLEKPFASVVANPPWTVPM 347 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I +++++ P YL N++++ W Q G +++ Sbjct: 348 GIARREILPK---GPGYLAANDMYV----------NADGW---------VVQRAGPKSSL 385 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 + K E ++HDTP FN VR + GCVRV++ I LL P Sbjct: 386 GNVKFELQDSYAIFLHDTPARGAFNLSVRQRSHGCVRVQDAIGFARLLLSPDPE-RLALF 444 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII----PLPE 424 + + +T V + V +Y +A+ + FR+D+Y D + LP+ Sbjct: 445 DAAQASGETKRVTTGRNIGVRLLYWTAFVDGQGRVAFREDVYKRDAKLADALGIAVNLPQ 504 Query: 425 ---DHPIDSD 431 D PID D Sbjct: 505 VIADAPIDPD 514 >gi|261754930|ref|ZP_05998639.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str. 686] gi|261744683|gb|EEY32609.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str. 686] Length = 660 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 100/414 (24%), Positives = 174/414 (42%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 240 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 298 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 299 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPANYLAQHRD 356 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 357 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 416 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 417 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 475 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 476 SWGVPRSIILNEMLPKVMRDTSYLDRNGYKVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 534 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 535 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 594 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 595 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 643 >gi|163843230|ref|YP_001627634.1| peptidoglycan binding domain-containing protein [Brucella suis ATCC 23445] gi|163673953|gb|ABY38064.1| Peptidoglycan-binding domain 1 protein [Brucella suis ATCC 23445] Length = 510 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 100/414 (24%), Positives = 174/414 (42%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 90 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 148 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 149 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 206 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 207 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 266 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 267 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 325 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 326 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 384 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 385 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 444 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 445 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 493 >gi|182677142|ref|YP_001831288.1| peptidoglycan binding domain-containing protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182633025|gb|ACB93799.1| Peptidoglycan-binding domain 1 protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 624 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 89/353 (25%), Positives = 146/353 (41%), Gaps = 31/353 (8%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDP--- 126 +E + + +P P L +G V +R RL + G LD Sbjct: 280 QQEGYVALRDKLVAMRQERQPVARRLIPSGPPLRVGMRDPRVALIRARLSLDGKLDKGQT 339 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN------VPVDLRIR-QLQVN 179 G S +D+ V AV FQ +GL SG++ T ++ P+ + ++ N Sbjct: 340 ENGASEIYDSEVSMAVADFQRANGLPASGVLTPQTSAILSGARLSATPLSPHVEHEILAN 399 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 + R + + +G + VN+P + +E +V R V++G+ + TPI + ++ Sbjct: 400 MERWR-WMPHDLGHDRIEVNLPDFEVAVIEKDEVVSRHRVVIGKEETPTPIFSHVMQFLI 458 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NPYW +P SI++K+M+ L +P YL + G V R Sbjct: 459 VNPYWNVPASILKKEMLPKLAANPNYLHRLGYEVFKRDGHLV----------------VR 502 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG+ NA+ K F + Y+HDTP F R + GCVRV +L Sbjct: 503 QPPGERNALGRIKFMFPNDYAVYLHDTPSKHYFEEDKRAFSHGCVRVDEPYHFAEAVLG- 561 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 P WS I+ + K + L +P+H Y +A + + +D+YG Sbjct: 562 -PKWSESRIKG-LFGEKERYITLPKPLPIHLEYFTATVDRFGHLHLSEDVYGY 612 >gi|306840472|ref|ZP_07473231.1| cell wall degradation protein [Brucella sp. BO2] gi|306289487|gb|EFM60705.1| cell wall degradation protein [Brucella sp. BO2] Length = 666 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 100/414 (24%), Positives = 174/414 (42%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 246 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ETDPSAYLHGFQPDNA 304 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 305 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 362 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 363 VLAAHADARVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 422 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 423 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 481 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 482 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 540 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 541 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 600 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 601 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 649 >gi|254719057|ref|ZP_05180868.1| cell wall degradation protein [Brucella sp. 83/13] Length = 670 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 100/414 (24%), Positives = 174/414 (42%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 250 SARALRYAVDAGEGRIIADRLSGFHDLPRMRVNPKAVLEQLAR-ETDPSAYLRGFQPDNA 308 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 309 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 366 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 367 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 426 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 427 LR-WLPHDFGKRYVMVNQPAYRAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 485 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 486 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-VNGKKVSASAVNWSAVATGKAHIGIRQ 544 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 545 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 604 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 605 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 653 >gi|23501845|ref|NP_697972.1| hypothetical protein BR0962 [Brucella suis 1330] gi|23347781|gb|AAN29887.1| conserved hypothetical protein [Brucella suis 1330] Length = 572 Score = 352 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 100/414 (24%), Positives = 174/414 (42%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 152 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 210 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 211 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPANYLAQHRD 268 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 269 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 328 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 329 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 387 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 388 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 446 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 447 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 506 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 507 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 555 >gi|256369387|ref|YP_003106895.1| hypothetical protein BMI_I960 [Brucella microti CCM 4915] gi|255999547|gb|ACU47946.1| hypothetical protein BMI_I960 [Brucella microti CCM 4915] Length = 572 Score = 352 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 100/414 (24%), Positives = 174/414 (42%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 152 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 210 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 211 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 268 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 269 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 328 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 329 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 387 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 388 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 446 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 447 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 506 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 507 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 555 >gi|306838973|ref|ZP_07471795.1| cell wall degradation protein [Brucella sp. NF 2653] gi|306405940|gb|EFM62197.1| cell wall degradation protein [Brucella sp. NF 2653] Length = 666 Score = 352 bits (905), Expect = 5e-95, Method: Composition-based stats. Identities = 100/414 (24%), Positives = 174/414 (42%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 246 SARALRYAVDAGEGRIIADRLSGFHDLPRMRVNPKAVLEQLAR-ETDPSAYLRGFQPDNA 304 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 305 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 362 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 363 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 422 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 423 LR-WLPHDFGKRYVMVNQPAYRAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 481 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 482 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-VNGKKVSASAVNWSAVATGKAHIGIRQ 540 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 541 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 600 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 601 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 649 >gi|265984050|ref|ZP_06096785.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13] gi|264662642|gb|EEZ32903.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13] Length = 660 Score = 352 bits (904), Expect = 6e-95, Method: Composition-based stats. Identities = 100/414 (24%), Positives = 174/414 (42%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 240 SARALRYAVDAGEGRIIADRLSGFHDLPRMRVNPKAVLEQLAR-ETDPSAYLRGFQPDNA 298 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 299 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 356 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 357 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 416 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 417 LR-WLPHDFGKRYVMVNQPAYRAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 475 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 476 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-VNGKKVSASAVNWSAVATGKAHIGIRQ 534 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 535 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 594 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 595 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 643 >gi|299132062|ref|ZP_07025257.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] gi|298592199|gb|EFI52399.1| ErfK/YbiS/YcfS/YnhG family protein [Afipia sp. 1NLS2] Length = 710 Score = 352 bits (903), Expect = 7e-95, Method: Composition-based stats. Identities = 88/323 (27%), Positives = 149/323 (46%), Gaps = 28/323 (8%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V LR +L ++ +DA V +AV+ FQ + L +G++D+ T+ A+ Sbjct: 342 MDDARVPALRAKLGVT-----ENASDTHYDATVAAAVRKFQSANDLKATGVLDNHTVAAL 396 Query: 166 NVPVDLR-IRQLQVNLMRIKKLLEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 N P + R I ++VN+ R + L +G YV++NIP SL+ + NG ++ V+ Sbjct: 397 NGPRNDRKIDIIRVNMERWRWLPRDLGAPALGDAYVILNIPDYSLQLMHNGATAWKTRVV 456 Query: 221 VGRV-DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 VG+ TP+L + I NP W +P SII + + L+QDP L+ + + Sbjct: 457 VGKPGKHATPLLTETMKYITVNPTWNVPPSIIYNEYLPALQQDPTVLERMGLKLQRNPDG 516 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 + + Q PG+ NA+ + F ++ Y HDTP+ LF R Sbjct: 517 TIRIS---------------QPPGEANALGRIRFNFPNKFLVYQHDTPDKYLFAKSERAF 561 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWS 397 + GC+RV+N +L Y E++ + + L T +PV+ Y +A+ Sbjct: 562 SHGCMRVQNPDQYAATILGIALPKDHYTPEKIRSMYGHNEININLPTPLPVNITYQTAFV 621 Query: 398 PKDSIIQFRDDIYGLDNVHVGII 420 ++FR DIYG D + ++ Sbjct: 622 DDAGKLEFRKDIYGRDATMIKLL 644 >gi|254701720|ref|ZP_05163548.1| cell wall degradation protein [Brucella suis bv. 5 str. 513] gi|261752272|ref|ZP_05995981.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str. 513] gi|261742025|gb|EEY29951.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str. 513] Length = 634 Score = 352 bits (903), Expect = 8e-95, Method: Composition-based stats. Identities = 100/414 (24%), Positives = 174/414 (42%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 214 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 272 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 273 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 330 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 331 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 390 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 391 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 449 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 450 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 508 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 509 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 568 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 569 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 617 >gi|300023955|ref|YP_003756566.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525776|gb|ADJ24245.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 743 Score = 352 bits (903), Expect = 8e-95, Method: Composition-based stats. Identities = 96/365 (26%), Positives = 159/365 (43%), Gaps = 41/365 (11%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L LG V LR+RL + S + +D + AVK +Q +GL P G+V + Sbjct: 330 KVLRLGTRDDQVALLRQRLKV---PSESPDANDLYDDALLDAVKDYQRANGLTPDGLVGN 386 Query: 160 STLEAMN-------VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 A+N + + +L VN+ R + L + +G YV+ NIP + E + Sbjct: 387 GVRNALNGGGKSKRIDPARNVDRLIVNMERWR-WLPENLGSFYVMNNIPEYTSEIWRGKE 445 Query: 213 VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ--DPQY----- 265 L +IVG+ TP+L + + ++F P W +P I K++ L+Q + Y Sbjct: 446 RVLNQRMIVGQPSWPTPVLTASMQYVIFRPSWGMPDGIKAKELAPRLKQASNTGYDFFDQ 505 Query: 266 ---------------LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 L+ + + G+ V V+WN+ + + F Q PG N + Sbjct: 506 LFGGGGGGNSGGARVLQAYKLQV-SFNGRPVDPNSVNWNTADIRRYSFVQPPGPDNPLGM 564 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F ++++ YMHDTPE LF R + GC+RV + +L++ +S + E Sbjct: 565 VKFRFPNKHDVYMHDTPERGLFGQANRALSHGCLRVGDPRRTAEVILQEDKGYSAEKVGE 624 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII-----PLPED 425 + V L+ VPV+ VY +A +D ++ DIYG DN + + Sbjct: 625 LWNGGA--DVTLSKPVPVYLVYFTARVDEDGKLRTYGDIYGNDNRVMSALRGHPVRYNAP 682 Query: 426 HPIDS 430 ID Sbjct: 683 EAIDP 687 >gi|241767412|ref|ZP_04765115.1| ErfK/YbiS/YcfS/YnhG family protein [Acidovorax delafieldii 2AN] gi|241361827|gb|EER58083.1| ErfK/YbiS/YcfS/YnhG family protein [Acidovorax delafieldii 2AN] Length = 322 Score = 351 bits (902), Expect = 9e-95, Method: Composition-based stats. Identities = 94/306 (30%), Positives = 149/306 (48%), Gaps = 8/306 (2%) Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DL +D +++ VK FQ RH L G++ TL+A+ VP R RQ+++ + R Sbjct: 1 DLPADARPPALYDEALQNGVKAFQERHALATDGVIGKGTLDALAVPPAARARQIELAMER 60 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVE--NGKVGLR--STVIVGRV-DRQTPILHSRINR 237 ++ G R ++VNIP L A E NG+V L+ VIVG+ D +TP+ + Sbjct: 61 LR-WTPLLRGPRMIVVNIPEFVLRAYEVHNGQVSLQLAMKVIVGKALDTRTPLFDEDMRF 119 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE-VFVEEVDWNSPEPPNF 296 I F+PYW +P SI + + + LR+DP Y + + G+ + ++ Sbjct: 120 IEFSPYWNVPPSIARSETIPRLRRDPGYFDQQGLEFVGANGQVHTALAAEHLDAVLRGQM 179 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 RQ PG NA+ K F + +N Y+H TP P LF R + GCVRV + + L ++ Sbjct: 180 RIRQRPGPKNALGDIKFVFPNNSNIYLHHTPAPALFQRDRRDFSHGCVRVEDPVALAQFV 239 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 L++ P W I E + ++ ++LA +PV Y +A K F D+YG D + Sbjct: 240 LRNDPAWPEPRIREAMARGQSATLRLAEPLPVVIAYSTAIV-KQGKPHFFADLYGQDKLL 298 Query: 417 VGIIPL 422 + Sbjct: 299 DQALRQ 304 >gi|316935702|ref|YP_004110684.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] gi|315603416|gb|ADU45951.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodopseudomonas palustris DX-1] Length = 743 Score = 351 bits (902), Expect = 9e-95, Method: Composition-based stats. Identities = 100/426 (23%), Positives = 171/426 (40%), Gaps = 41/426 (9%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK-E 73 ++ +H S + I H I + + + + Sbjct: 266 LTESMMDYARQAQSGRMHWSQVSADIQYPEHPIDPAQVLATVTTAADASAALDSYNPPHK 325 Query: 74 TIAQTEKAIAFYQ--------DILSRGGWPELPIRPLHLGNS--SVSVQRLRERLIISGD 123 + +K +A + I P V +LR RL ++ Sbjct: 326 LYRELKKKLAELRGESDKPAIKIAEGETLRYQPAGKKRAEVKIDDPRVPQLRARLGVT-- 383 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-IRQLQVNLMR 182 S +DA V +AV+ FQ L +G++D T++A+N P R I + VN+ R Sbjct: 384 ---ENTDSATYDAAVAAAVRKFQHSADLKATGVLDDRTVKALNTPKRDRTIDTILVNMER 440 Query: 183 IKKLLEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV-DRQTPILHSRINR 237 + L Q + YV++N+P +L+ ++NG+ + V+VG+ TP+L + Sbjct: 441 WRWLPRQLGAPALDDAYVILNVPDYTLKLMQNGEQVWSTRVVVGKPGKHATPLLTETMKY 500 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 I NP W +P SII + + L+QDP L + + + + + Sbjct: 501 ITVNPTWNVPPSIINNEYLPALQQDPTVLDRMGLKLSRNRDGSIHIS------------- 547 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 Q PG+ NA+ + F ++ Y HDTP+ LF R + GC+RV+N LL Sbjct: 548 --QPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFGRDERAFSHGCMRVQNPDQYAAALL 605 Query: 358 K---DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 ++ I + R +K AT +PV+ Y +A+ D +Q R DIYG D Sbjct: 606 NIAMPDKNYTPARI-RSMYGRSEVDLKFATPIPVNITYQTAFVDDDGKLQLRKDIYGRDA 664 Query: 415 VHVGII 420 + ++ Sbjct: 665 AMLALL 670 >gi|225627441|ref|ZP_03785478.1| cell wall degradation protein [Brucella ceti str. Cudo] gi|254706835|ref|ZP_05168663.1| cell wall degradation protein [Brucella pinnipedialis M163/99/10] gi|254714056|ref|ZP_05175867.1| cell wall degradation protein [Brucella ceti M644/93/1] gi|254716887|ref|ZP_05178698.1| cell wall degradation protein [Brucella ceti M13/05/1] gi|225617446|gb|EEH14491.1| cell wall degradation protein [Brucella ceti str. Cudo] Length = 670 Score = 351 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 99/414 (23%), Positives = 173/414 (41%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 250 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 308 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 309 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 366 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R Sbjct: 367 VLAAHADASVYDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMER 426 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 427 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 485 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 486 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 544 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 545 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 604 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 605 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 653 >gi|256254952|ref|ZP_05460488.1| cell wall degradation protein [Brucella ceti B1/94] Length = 670 Score = 351 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 99/414 (23%), Positives = 173/414 (41%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 250 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 308 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 309 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 366 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R Sbjct: 367 VLAAHADASVYDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMER 426 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 427 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 485 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 486 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 544 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 545 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 604 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 605 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 653 >gi|260566489|ref|ZP_05836959.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str. 40] gi|260156007|gb|EEW91087.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str. 40] Length = 634 Score = 351 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 100/414 (24%), Positives = 174/414 (42%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 214 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 272 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 273 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPANYLAQHRD 330 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 331 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 390 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 391 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 449 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 450 SWGVPRSIILNEMLPKVMRDTSYLDRNGYKVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 508 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 509 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 568 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 569 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 617 >gi|260168681|ref|ZP_05755492.1| cell wall degradation protein [Brucella sp. F5/99] Length = 666 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 99/414 (23%), Positives = 173/414 (41%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 246 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 304 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 305 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 362 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R Sbjct: 363 VLAAHADASVYDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMER 422 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 423 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 481 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 482 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 540 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 541 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 600 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 601 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 649 >gi|222086217|ref|YP_002544749.1| hypothetical protein Arad_2690 [Agrobacterium radiobacter K84] gi|221723665|gb|ACM26821.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 633 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 97/382 (25%), Positives = 169/382 (44%), Gaps = 21/382 (5%) Query: 57 ARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI---RPLHLGNSSVSVQR 113 A D + S + + + +A + S G + I L G SS + Sbjct: 254 ASPDAAAYLNSRSPSNQQFTELKAELAKLKGANSTNG-SNISISLTGILKPGGSSPEMTN 312 Query: 114 LRERLIISGD--LDPSKGLSVA-------FDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 + + + G L + ++A + + + V+ FQ GL G++ S++ A Sbjct: 313 IVKAIQHRGSDVLKTAHAATLASYQGTPDYTPDLVALVEDFQKEKGLTSDGVIGQSSVRA 372 Query: 165 MNV-PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 M D +I++L + + +++ L ++G RYVL+N PA + N + L V+VG Sbjct: 373 MVGENSDAKIQKLVIAMEQLR-WLPNELGSRYVLINQPAFMVYYHNNNQEQLSMRVVVGG 431 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 QT +I + FNP+W +P+SII +M+ LR DP YL + + G+ V Sbjct: 432 KQHQTFFFEDQIQTVEFNPFWGVPQSIIINEMLPKLRADPNYLDRMGYQV-EVGGRAVAS 490 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 VDW + RQ P NA+ KI F + + YMHDTP+ F +R + GC Sbjct: 491 SSVDWYG-STKSVAVRQPPSSDNALGELKILFPNSHAIYMHDTPQKSFFKKDMRALSHGC 549 Query: 344 VRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSII 403 VR+ + + +L + I + + + V + +VP++ Y +AW KD ++ Sbjct: 550 VRLADPRAMAAAVLNT----TVADIAKQIAGGQNKAVAVPQKVPIYIAYFTAWPNKDGVV 605 Query: 404 QFRDDIYGLDNVHVGIIPLPED 425 Q+ +D+Y D + Sbjct: 606 QYFNDVYDRDAATQKALDATTK 627 >gi|256159684|ref|ZP_05457437.1| cell wall degradation protein [Brucella ceti M490/95/1] Length = 666 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 99/414 (23%), Positives = 173/414 (41%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 246 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 304 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 305 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 362 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R Sbjct: 363 VLAAHADASVYDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMER 422 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 423 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 481 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 482 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 540 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 541 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 600 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 601 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 649 >gi|239831842|ref|ZP_04680171.1| peptidoglycan binding domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239824109|gb|EEQ95677.1| peptidoglycan binding domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 670 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 95/429 (22%), Positives = 170/429 (39%), Gaps = 27/429 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDR-FDNFLARVDMGIDSDIPIISKET 74 L + E + A L + + + + + D E Sbjct: 250 SARALRYAIDAGEGRVIADRLSGFHDLPRNRVDPKAVLEKLASESDPAAYLHGFQPDNEQ 309 Query: 75 IAQTEKAIAFYQDILSRGGWPELPI---RPLHLGNSSVS---VQRLRERLIISGDLDP-- 126 A + +A + I + G+++ V L R + L Sbjct: 310 YAALKSELAN----TEPPSAEPIRISLNGVIKPGDANPQLGKVVALISRHAPASYLAEHR 365 Query: 127 ----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL-RIRQLQVNLM 181 + +D + +A+K +Q G P G++ +TL A+ + ++ ++ Sbjct: 366 QVLDAHANGDVYDPELVAAIKDYQKLSGSTPDGVIGRNTLSALQGEQSSIKRDRILYSME 425 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R++ L G RYV+VN PA E E+GK L V++G QT ++++ ++FN Sbjct: 426 RLR-WLPHDFGTRYVMVNQPAYRAEYFEDGKEKLAMNVVIGSPSHQTYFFYNKVQTVVFN 484 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFR 299 P W +PRSII +M+ + +D YL N + GK+V V+W++ R Sbjct: 485 PSWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ADGKKVSASAVNWSAVAAGKAHVGIR 543 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q P NA+ KI F + ++ YMHDTP F+ +R + GC+R+ D+ ++ Sbjct: 544 QKPSLDNALGELKILFPNSHDIYMHDTPAKSYFSRDMRALSHGCIRLERPRDMAAAVMGT 603 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGI 419 T + + +K+ VPV+ Y +AW I++ D+Y D+ Sbjct: 604 TVQDLDKYF-----GKNERGIKVKEPVPVYISYFTAWPDASGQIRYYGDVYDRDSGLQKA 658 Query: 420 IPLPEDHPI 428 D + Sbjct: 659 FDKTADSRL 667 >gi|261218691|ref|ZP_05932972.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1] gi|260923780|gb|EEX90348.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1] Length = 660 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 99/414 (23%), Positives = 173/414 (41%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 240 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 298 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 299 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 356 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R Sbjct: 357 VLAAHADASVYDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMER 416 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 417 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 475 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 476 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 534 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 535 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 594 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 595 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 643 >gi|265998101|ref|ZP_06110658.1| peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1] gi|262552569|gb|EEZ08559.1| peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1] Length = 660 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 99/414 (23%), Positives = 173/414 (41%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 240 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 298 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 299 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 356 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R Sbjct: 357 VLAAHADASVYDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMER 416 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 417 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 475 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 476 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 534 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 535 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 594 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 595 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 643 >gi|27382242|ref|NP_773771.1| hypothetical protein blr7131 [Bradyrhizobium japonicum USDA 110] gi|27355413|dbj|BAC52396.1| blr7131 [Bradyrhizobium japonicum USDA 110] Length = 735 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 95/425 (22%), Positives = 169/425 (39%), Gaps = 39/425 (9%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE- 73 + +H S + I H + + + + Sbjct: 260 LTASMFDYARQAQSGRMHWSQVSADILYPEHPVDPSEVLAKVTTAADASAALDSYNPPQK 319 Query: 74 TIAQTEKAIAFYQ--------DILSRGGWPELPIRP--LHLGNSSVSVQRLRERLIISGD 123 + + +A + +I P + V +LR +L I+ Sbjct: 320 LYKELKAKLAELRGQGSGPVIEIADGPALKYTPAGKKQAEIVVEDPRVPQLRAKLGIT-- 377 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV-DLRIRQLQVNLMR 182 +DA V AV+ FQ + +G++D T++A+N P D +I + VN+ R Sbjct: 378 ---ENASDTRYDAAVAEAVRKFQNGAEIKATGILDDKTVKALNTPKRDKQIDTVLVNMER 434 Query: 183 IKKLLEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV-DRQTPILHSRINR 237 + L +G YV++NIP +L+ ++ G+ + V+ G+ TP+L + Sbjct: 435 WRWLPRDLGVPSLGDAYVILNIPDYTLKVMQRGQPVWTTRVVTGKPGQHATPLLTETMKY 494 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 I NP W +P SI+ + + L+QDP L+ + + + V + Sbjct: 495 ITVNPTWNVPPSIVYNEYLPALQQDPTVLQRMGLKLEQNRDGSVHIS------------- 541 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 Q PG+ NA+ + F ++ Y HDTP+ LF R + GC+RV+N LL Sbjct: 542 --QPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAKEDRAFSHGCMRVQNPDQYASVLL 599 Query: 358 KDTPTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 +Y E V + + +K T +PV+ Y +A+ +QFR D+YG D+ Sbjct: 600 NIAMPNEKYTPERVRSMYGKSEIDLKFPTPIPVNITYQTAFVDDAGKLQFRKDVYGRDST 659 Query: 416 HVGII 420 + I+ Sbjct: 660 MINIL 664 >gi|265994887|ref|ZP_06107444.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|262766000|gb|EEZ11789.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] Length = 538 Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 99/414 (23%), Positives = 173/414 (41%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 118 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 176 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 177 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 234 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G G++ +T+ A+ +R ++ ++ R Sbjct: 235 VLAAHADASVYDPELVSAIKDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMER 294 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 295 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 353 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 354 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 412 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 413 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 472 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 473 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 521 >gi|260563978|ref|ZP_05834464.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. 16M] gi|265991052|ref|ZP_06103609.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. Rev.1] gi|260153994|gb|EEW89086.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. 16M] gi|263001836|gb|EEZ14411.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1 str. Rev.1] Length = 538 Score = 350 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 99/414 (23%), Positives = 173/414 (41%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 118 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 176 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 177 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 234 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G G++ +T+ A+ +R ++ ++ R Sbjct: 235 VLAAHADASVYDPELVSAIKDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMER 294 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 295 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 353 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 354 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 412 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 413 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 472 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 473 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 521 >gi|254710055|ref|ZP_05171866.1| hypothetical protein BpinB_07218 [Brucella pinnipedialis B2/94] gi|256031550|ref|ZP_05445164.1| hypothetical protein BpinM2_12995 [Brucella pinnipedialis M292/94/1] gi|261317602|ref|ZP_05956799.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis B2/94] gi|265988636|ref|ZP_06101193.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M292/94/1] gi|261296825|gb|EEY00322.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis B2/94] gi|264660833|gb|EEZ31094.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M292/94/1] Length = 556 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 99/414 (23%), Positives = 173/414 (41%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 136 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 194 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 195 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 252 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R Sbjct: 253 VLAAHADASVYDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMER 312 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 313 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 371 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 372 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 430 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 431 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 490 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 491 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 539 >gi|256113506|ref|ZP_05454340.1| cell wall degradation protein [Brucella melitensis bv. 3 str. Ether] Length = 531 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 99/414 (23%), Positives = 173/414 (41%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 111 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 169 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 170 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 227 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G G++ +T+ A+ +R ++ ++ R Sbjct: 228 VLAAHADASVYDPELVSAIKDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMER 287 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 288 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 346 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 347 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 405 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 406 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 465 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 466 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 514 >gi|17987297|ref|NP_539931.1| cell wall degradation protein [Brucella melitensis bv. 1 str. 16M] gi|256044628|ref|ZP_05447532.1| cell wall degradation protein [Brucella melitensis bv. 1 str. Rev.1] gi|17982976|gb|AAL52195.1| cell wall degradation protein [Brucella melitensis bv. 1 str. 16M] Length = 531 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 99/414 (23%), Positives = 173/414 (41%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 111 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 169 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 170 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 227 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G G++ +T+ A+ +R ++ ++ R Sbjct: 228 VLAAHADASVYDPELVSAIKDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMER 287 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 288 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 346 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 347 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 405 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 406 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 465 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 466 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 514 >gi|304392206|ref|ZP_07374148.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] gi|303296435|gb|EFL90793.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] Length = 694 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 89/388 (22%), Positives = 162/388 (41%), Gaps = 23/388 (5%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP---LHLGNSSVS 110 + + ++ +A ++ G + I+ + G ++ Sbjct: 304 KLAEEAAPATVLASAHPADASYTALKRELATL--LIEAGDVKIITIKSGTFIRPGGTNDQ 361 Query: 111 VQRLRER--LIISGDLDPSKGLSVAFD-------AYVESAVKLFQMRHGLDPSGMVDSST 161 V + E L +S + ++ D V+ FQ + GL P G+V +T Sbjct: 362 VASIVEAISLKMSAEERAEAFDALMMDYSDGVYIEEAVELVRAFQKKSGLKPDGIVGKNT 421 Query: 162 LEAMNV-PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 L + +I ++++ + R++ +G R+V +N PA + GK + + Sbjct: 422 LARLKFDSPKTKIDKVRLAMERLR-WHPDSLGSRHVFINQPAYRATLMNGGKPQISMRAV 480 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VG+ QT H I + FNPYW IPRSI+ +M+ LR++P + + + + G+ Sbjct: 481 VGKPQHQTNFFHDEIEYVEFNPYWGIPRSILVNEMLPKLRRNPSHFDNLGYEVTTQGGRR 540 Query: 281 VFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 + VD NF + RQ PG NA+ KI F +++ YMHDTP LF R Sbjct: 541 ISSSSVD-WWSVGSNFPYNVRQPPGPKNALGELKIMFPNKHAIYMHDTPAKSLFKREKRA 599 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 + GCVR+ + + +L + + R+ +L T++PV Y +AW Sbjct: 600 YSHGCVRLADPRAMAAAVLGTR----VDDVSAEIFDRQNKTRRLKTKLPVFVSYFTAWPT 655 Query: 399 KDSIIQFRDDIYGLDNVHVGIIPLPEDH 426 D +++ D+Y D + + + Sbjct: 656 ADGKVEYFGDVYQRDTALLKAMSMEAKA 683 >gi|114570411|ref|YP_757091.1| peptidoglycan binding domain-containing protein [Maricaulis maris MCS10] gi|114340873|gb|ABI66153.1| Peptidoglycan-binding domain 1 protein [Maricaulis maris MCS10] Length = 539 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 108/345 (31%), Positives = 170/345 (49%), Gaps = 7/345 (2%) Query: 86 QDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + + WP + P L G+ V +LR RL G LD +D +E+AV+ Sbjct: 178 RVLAVTPIWPGVQSGPSLSAGDVGGRVDQLRTRLTAEGLLDGDWQEGDHYDIRLETAVRR 237 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 +Q R L PSG +D +TL +N+P D RI QL NL + ++ + +G R++ VN+ Sbjct: 238 YQGRTNLAPSGRMDQATLRQLNLPPDRRIGQLMANLEQ-RRWRTRDLGRRHIWVNLADFR 296 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 LEA E+G++ V+VGR TP + I+ NP+W +P + R++P Sbjct: 297 LEAWEDGQLAREHEVMVGRQASSTPEFSEDMQYIVLNPWWGLPNGSARPRFQ-SFRRNPS 355 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTY 322 ++ + + G+ + V E+DW+ ++ +R Q PG N M K F +RNN Y Sbjct: 356 LARELGFRIYNRSGEAISVYEIDWSR-WGGDWPYRMSQPPGATNPMGEVKFIFPNRNNIY 414 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL 382 +HDT E F R ++GC+RV++ + L W+L WSR I+EVV T V L Sbjct: 415 IHDTTERDQFVRTRRDFSAGCIRVQDPLALAQWVLDGQDGWSRARIDEVVAGSSPTVVWL 474 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLD-NVHVGIIPLPEDH 426 +PVH Y + D +++ +D+Y D V + E H Sbjct: 475 DDRIPVHIAYWTVVGDPDGRVRYLNDLYRRDSGVIDAYLAAHESH 519 >gi|319783599|ref|YP_004143075.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169487|gb|ADV13025.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 629 Score = 349 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 87/334 (26%), Positives = 158/334 (47%), Gaps = 17/334 (5%) Query: 102 LHLGNSSVSVQRL----RERL-----IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 L G +S + +L L G++ S +D + +K Q + G+ Sbjct: 295 LKPGETSPELPKLLTLIARNLDDEMGGAYGEVLSRLATSDVYDPELVPVIKAVQQKAGMK 354 Query: 153 PSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 G++ T+ ++ ++ +++V L ++ L +G V +N PA + ++NG Sbjct: 355 GDGVIGPRTVASLAGTSKADKLLKVEVALEELR-WLPSDLGSPRVFINQPAFTASYIDNG 413 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 + LR+ V+VGR QT + +I ++ F+PYW +P+SII +M+ LR DP YL Sbjct: 414 EEKLRTRVVVGRTTNQTSFFYDQIKQVDFHPYWGVPQSIIVNEMLPRLRNDPGYLDRAGY 473 Query: 272 HMIDEKGKEVFVEEVDWNSPEPP-NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 + D +GK + V+W + + RQ P + NA+ KI F +++ YMHDTP+ Sbjct: 474 EVTDSRGKRIPSSAVNWGAYGSNIPYSVRQQPSEANALGELKILFPNKHAIYMHDTPQKS 533 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 F +R + GCVR+++ + +L S +I E +K T + +PV+ Sbjct: 534 FFQRDMRALSHGCVRLQDPRGMAAAVLGT----SVDYIAEKLKHGHATE-NVTRTIPVYV 588 Query: 391 VYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPE 424 Y +AW +++ D+Y D+ + + E Sbjct: 589 AYFTAWPDLSGKVEYFGDVYDRDSRLKQALDVTE 622 >gi|307318578|ref|ZP_07598012.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306895918|gb|EFN26670.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] Length = 631 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 91/380 (23%), Positives = 159/380 (41%), Gaps = 27/380 (7%) Query: 52 FDNFLARVDMGIDSDIPIISKE----TIAQTEKAIAFYQDILSRGGWPELPIRP---LHL 104 FL +++ D + S+ + + + + P + I P L Sbjct: 243 LLGFLEKIETSSDVAALVESQNPKSAQFTALRQELERLRTQVEAA--PRVEIAPGTLLKP 300 Query: 105 GNSSVSVQRLRE--RLIISGDLDPSKGL-------SVAFDAYVESAVKLFQMRHGLDPSG 155 G S+ + + +L S L + + + + V+ FQ +GL G Sbjct: 301 GESNPELANVIAGIKLKASEALKTEHAVVLAAYEGTPDYTPELVPLVEAFQKEYGLKADG 360 Query: 156 MVDSSTLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 +V +++ A+ +I ++++ + + + L +G RYV +N PA + E G Sbjct: 361 IVGQASIRALTGGDTTQGKIDKVEIAMEQAR-WLPDGLGDRYVFINQPAFTASYTEQGTE 419 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 V+VG QT I + NPYW +P+SII +M+ LR DP YL + Sbjct: 420 QFSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRNDPGYLDRMGYQV 479 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 + G+ V V+W + RQ P NA+ KI F + + YMHDTP F Sbjct: 480 -EVGGRVVPSTAVNWYG-STNSIAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFK 537 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 R + GCVR+ + + +L S + + + + ++ +VPV+ Y Sbjct: 538 RDQRALSHGCVRLADPRRMAAAVL----GVSVDEVGMEISGGRNKALPVSAKVPVYVAYF 593 Query: 394 SAWSPKDSIIQFRDDIYGLD 413 +AW KD +++ DD+Y D Sbjct: 594 TAWPNKDGTVEYFDDVYERD 613 >gi|110637821|ref|YP_678028.1| hypothetical protein CHU_1417 [Cytophaga hutchinsonii ATCC 33406] gi|110280502|gb|ABG58688.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406] Length = 568 Score = 349 bits (896), Expect = 5e-94, Method: Composition-based stats. Identities = 103/351 (29%), Positives = 182/351 (51%), Gaps = 9/351 (2%) Query: 75 IAQTEKAIAFYQDILSRGGW--PELPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 A + A+ D L G+ E+P + L G++S + +++RL + + ++ L Sbjct: 220 YASLQTALIN-ADSLEANGFTSKEIPYIGKKLVKGDTSFVILEVKKRLQATTEYSFNE-L 277 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + FD + +VK+FQ GL +G++D +TL +N ++ N+ R + + Sbjct: 278 NNVFDEQLFQSVKIFQEHVGLHGTGVIDKTTLAKLNYTPAQIRNTIRANMERCR-WFSNE 336 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 + Y+LVNIP +L +NGKV TVIVG+ QTP+ + I+ + FNPYW +PRSI Sbjct: 337 LPNEYILVNIPDYTLSHFKNGKVIYNETVIVGKQLNQTPVFQATISNVEFNPYWTVPRSI 396 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 K+++ L++DPQYL+ +N+ +++ + S F ++ PG N++ Sbjct: 397 AVKEILPSLKKDPQYLEKHNMFLMEGDKEIASPPSFAGYSDSYFPFTIKEKPGPKNSLGQ 456 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEE 370 K F + + YMHDTP LF+N VR + GC+R+ N + LL + I+E Sbjct: 457 VKFSFPNPYSIYMHDTPAKYLFDNDVRSYSHGCIRLHNPLKFADHLLS-QQGVTEKRIDE 515 Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPK-DSIIQFRDDIYGLDNVHVGII 420 +V++ K + L T++P+ Y + ++ K D+ + F D+Y D + + Sbjct: 516 IVQSEKNYVMALETKMPIMISYFTCYTKKGDNRLYFFYDVYDSDKKIIEGL 566 >gi|15965611|ref|NP_385964.1| hypothetical protein SMc00150 [Sinorhizobium meliloti 1021] gi|307302730|ref|ZP_07582486.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] gi|15074792|emb|CAC46437.1| Putative membrane protein [Sinorhizobium meliloti 1021] gi|306903094|gb|EFN33685.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] Length = 631 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 91/380 (23%), Positives = 159/380 (41%), Gaps = 27/380 (7%) Query: 52 FDNFLARVDMGIDSDIPIISKE----TIAQTEKAIAFYQDILSRGGWPELPIRP---LHL 104 FL +++ D + S+ + + + + P + I P L Sbjct: 243 LLGFLEKIETSSDVAALVESQNPKSAQFTALRQELERLRTQVEAA--PRVEIAPGTLLKP 300 Query: 105 GNSSVSVQRLRE--RLIISGDLDPSKGL-------SVAFDAYVESAVKLFQMRHGLDPSG 155 G S+ + + +L S L + + + + V+ FQ +GL G Sbjct: 301 GESNPELANVIAGIKLKASEALKTEHAVVLAAYEGTPDYTPELVPLVEAFQKEYGLKADG 360 Query: 156 MVDSSTLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 +V +++ A+ +I ++++ + + + L +G RYV +N PA + E G Sbjct: 361 IVGQASIRALTGGDTTQGKIDKVEIAMEQAR-WLPDGLGDRYVFINQPAFTASYTEQGTE 419 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 V+VG QT I + NPYW +P+SII +M+ LR DP YL + Sbjct: 420 QFSMRVVVGSKANQTYFFQDEIQTVEVNPYWGVPQSIIVNEMLPKLRNDPGYLDRMGYQV 479 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 + G+ V V+W + RQ P NA+ KI F + + YMHDTP F Sbjct: 480 -EVGGRVVPSTAVNWYG-STNSIAVRQPPSSDNALGELKILFPNAHAIYMHDTPSKSFFK 537 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 R + GCVR+ + + +L S + + + + ++ +VPV+ Y Sbjct: 538 RDQRALSHGCVRLADPRRMAAAVL----GVSVDEVGMEISGGRNKALPVSAKVPVYVSYF 593 Query: 394 SAWSPKDSIIQFRDDIYGLD 413 +AW KD +++ DD+Y D Sbjct: 594 TAWPNKDGTVEYFDDVYERD 613 >gi|254500817|ref|ZP_05112968.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] gi|222436888|gb|EEE43567.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] Length = 658 Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats. Identities = 95/425 (22%), Positives = 175/425 (41%), Gaps = 19/425 (4%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIV-NDRFDNFLARVDMGIDSDIPIISKE 73 L L I + + + + H + + F A ++ + + Sbjct: 231 LSAAALTYVLDATRGRIDPNRISQYHDLPRHDVDLVGALEEFTASDNVATALEAHQPQSD 290 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVS----VQRLRER----LIISGDL 124 + +A + + L G SS V + + L + Sbjct: 291 HFKKLSAELARLKAEDEESDQIVIAPGTFLKAGKSSPEMKNIVAAISKHGSETLKTDHEA 350 Query: 125 DPSKGL-SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV-PVDLRIRQLQVNLMR 182 + S + + + VK FQ L G+V +T++AM +I ++++ + R Sbjct: 351 TLAAYDGSDLYTPELVALVKGFQKEAKLTADGIVGKNTIKAMVGETNAAKIAKVELAMER 410 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + L +++G R V +N PA + + G + V+VG+ QT + +I + +NP Sbjct: 411 SR-WLPEELGERKVFINQPAFTATYHQPGTDPMSMRVVVGKKSNQTNFFYDKIEIVEYNP 469 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP--EPPNFIFRQ 300 YW +P SII +M+ L +P YL + G++V VDW + + + RQ Sbjct: 470 YWGVPYSIIVNEMIPKLAANPSYLDQAGYEVTTPGGRKVSSASVDWYAVANKKKSINVRQ 529 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG+ NA+ KI F +R++ YMHDTP LFN R + GC+R+ + + +L + Sbjct: 530 YPGRSNALGEVKILFPNRHHIYMHDTPSKSLFNKDTRAFSHGCIRLHDPKGMAAAVLGKS 589 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + + + + K+ ++PV+ Y +AW D I F D+Y D + + Sbjct: 590 TDY----VSSRIAAGQNAQEKVTGDIPVYVSYFTAWPEADGSIGFYTDVYDRDRYLLKAL 645 Query: 421 PLPED 425 E+ Sbjct: 646 EKTEE 650 >gi|261314301|ref|ZP_05953498.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M163/99/10] gi|261321811|ref|ZP_05961008.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1] gi|261758157|ref|ZP_06001866.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99] gi|261294501|gb|EEX97997.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1] gi|261303327|gb|EEY06824.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis M163/99/10] gi|261738141|gb|EEY26137.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99] Length = 634 Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats. Identities = 99/414 (23%), Positives = 173/414 (41%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 214 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 272 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 273 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 330 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R Sbjct: 331 VLAAHADASVYDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMER 390 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 391 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 449 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 450 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 508 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 509 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 568 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 569 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 617 >gi|225852468|ref|YP_002732701.1| peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC 23457] gi|225640833|gb|ACO00747.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC 23457] Length = 510 Score = 348 bits (894), Expect = 8e-94, Method: Composition-based stats. Identities = 98/414 (23%), Positives = 173/414 (41%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 90 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 148 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 149 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 206 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA++ +Q G G++ +T+ A+ +R ++ ++ R Sbjct: 207 VLAAHADASVYDPELVSAIQDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMER 266 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 267 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 325 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 326 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 384 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 385 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 444 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 445 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 493 >gi|261222137|ref|ZP_05936418.1| peptidoglycan binding domain-containing protein [Brucella ceti B1/94] gi|260920721|gb|EEX87374.1| peptidoglycan binding domain-containing protein [Brucella ceti B1/94] Length = 634 Score = 348 bits (894), Expect = 8e-94, Method: Composition-based stats. Identities = 99/414 (23%), Positives = 173/414 (41%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 214 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 272 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 273 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 330 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q P G++ +T+ A+ +R ++ ++ R Sbjct: 331 VLAAHADASVYDPELVSAIKDYQKLSSGTPDGLIGRATISALQGEQTSIRRDRILYSMER 390 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 391 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 449 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 450 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 508 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 509 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 568 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 569 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 617 >gi|213963732|ref|ZP_03391982.1| putative peptidoglycan binding domain protein [Capnocytophaga sputigena Capno] gi|213953612|gb|EEB64944.1| putative peptidoglycan binding domain protein [Capnocytophaga sputigena Capno] Length = 563 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 97/359 (27%), Positives = 168/359 (46%), Gaps = 14/359 (3%) Query: 76 AQTEKAIAFYQDILSR--GGWPEL--PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 Q E+ A Y+ + + + + P + G ++ V +LR L G + + Sbjct: 204 KQYEQMKALYKQLKQQVVDTFITVDFPAKDFVYGYTAPIVVQLRNSLKQKGFEAAPEIEA 263 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 D+ + V+ FQ +GL G++ TL +N+ LQ+N+ R++ + Sbjct: 264 QMVDSTLIRTVQRFQKSNGLTADGLLGKQTLYFLNMNKTRERDLLQLNMERMRVF-NNDL 322 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 G Y LVNIP L + ++ V+VGR + TPI I + F P W +P+SII Sbjct: 323 GEHYALVNIPDFKLSLFHKDSLQFQTRVVVGRTETSTPIFTDTIRYVEFRPTWSVPQSII 382 Query: 252 QKDMMALL--RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE--PPNFIFRQDPGKINA 307 +K+M+ + + DP+ + M EKGK+V +DW P F F + P N+ Sbjct: 383 KKEMLPQIISQADPEKYQKRGYTMY-EKGKKVDPTTIDWTDPSVHKRGFHFVEAPSANNS 441 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT---WS 364 + K + + Y+HDTP F R + GCVRV+N +L LLK+ T W+ Sbjct: 442 LGLVKFILTNDMSIYLHDTPSKYFFQRDDRALSHGCVRVQNPNELAYHLLKNEATETPWT 501 Query: 365 RYHIEEVVKTRKTTP-VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + E + +++ + L T+ ++ +Y +A+ ++ + ++DIY LDN + I Sbjct: 502 LEKVNEAMNGKRSQYRIALKTKYKINILYYTAFIDENGELTLKNDIYDLDNEQLKEIKR 560 >gi|265999484|ref|ZP_05466569.2| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|263094225|gb|EEZ18102.1| peptidoglycan binding domain-containing protein [Brucella melitensis bv. 2 str. 63/9] Length = 538 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 98/414 (23%), Positives = 173/414 (41%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 118 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 176 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 177 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 234 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA++ +Q G G++ +T+ A+ +R ++ ++ R Sbjct: 235 VLAAHADASVYDPELVSAIQDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMER 294 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 295 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 353 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 354 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 412 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 413 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 472 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 473 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 521 >gi|213420016|ref|ZP_03353082.1| hypothetical protein Salmonentericaenterica_20520 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 546 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 105/404 (25%), Positives = 163/404 (40%), Gaps = 80/404 (19%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLTNTATLRPGQWSNDV 253 Query: 112 QRLRERLIISGDLD-----------------------------------------PSKGL 130 LRE L +G LD Sbjct: 254 PALREILQRTGMLDGGPKIALPGDNTSDSAVVSPSAVVDETSVAQPVDEPTARRSKPAPA 313 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 314 ARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL 373 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 374 --STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 431 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKIN 306 +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG N Sbjct: 432 ARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHN 491 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 ++ K S + Y+HDTP LF R +SGCVR + Sbjct: 492 SLGRYKFNMPSSDAIYLHDTPNHNLFQRDARALSSGCVRSIRPL 535 >gi|222148534|ref|YP_002549491.1| hypothetical protein Avi_2078 [Agrobacterium vitis S4] gi|221735520|gb|ACM36483.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 614 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 93/388 (23%), Positives = 162/388 (41%), Gaps = 21/388 (5%) Query: 47 IVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI---RPLH 103 ++ D + D+ + + +A ++ + I L Sbjct: 225 NLDPVLDLVRSSPDIAAYLHGRDPASPQFQALKAELAKLVAEANQQQSKPVKINLTGVLK 284 Query: 104 LGNSSVSVQRLRE--------RLIISGDLDPSKGLSVA-FDAYVESAVKLFQMRHGLDPS 154 G S+ + + E L L + + + + V+ +Q GL P Sbjct: 285 PGGSNPELANIVEGIKTYGSDALKTEHALTLTDYTGTPDYTPELVALVESYQKERGLKPD 344 Query: 155 GMVDSSTLEAMNV-PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++ +T+ M +I +L V + +++ L +G RYV +N PA + + Sbjct: 345 GVIGQATVRTMVGHSNAEKIEKLVVAMEQLR-WLPADLGPRYVFINQPAFEAYYFNDRQQ 403 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 + V+VG QT + I + FNPYW +PRSII +M+ LRQDP YL + Sbjct: 404 QIAMKVVVGAPQHQTFFFQNMIQTVEFNPYWGVPRSIIVNEMLPKLRQDPSYLDRLGYEV 463 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 KG++V +VDW + RQ P NA+ KI F + + YMHDTP F Sbjct: 464 -SYKGRKVASSQVDW--YTTSDVDVRQPPSSDNALGDLKILFPNAHAIYMHDTPAKSFFK 520 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 +R + GCVR+ + ++ + I+ + + + V++ + PV+ Y Sbjct: 521 RDMRALSHGCVRLAEPRVMAAAVMGT----TVEDIDAQIASGQNRAVQVPQKFPVYVAYF 576 Query: 394 SAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 +AW KD ++++ DD+YG D Sbjct: 577 TAWPDKDGVVRYYDDVYGRDEATRKAFD 604 >gi|326408985|gb|ADZ66050.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M28] gi|326538698|gb|ADZ86913.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M5-90] Length = 531 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 98/414 (23%), Positives = 173/414 (41%), Gaps = 25/414 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 111 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 169 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 170 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 227 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA++ +Q G G++ +T+ A+ +R ++ ++ R Sbjct: 228 VLAAHADASVYDPELVSAIQDYQKLSGGTLDGLIGRATISALQGEQTSIRRDRILYSMER 287 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 288 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 346 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 347 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 405 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 406 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 465 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + +K+ VPV+ Y +AW D I + DIY D+ Sbjct: 466 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDIYDRDS 514 >gi|148258072|ref|YP_001242657.1| hypothetical protein BBta_6864 [Bradyrhizobium sp. BTAi1] gi|146410245|gb|ABQ38751.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 702 Score = 347 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 89/323 (27%), Positives = 148/323 (45%), Gaps = 28/323 (8%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S V +LR +L ++ + +DA V +AV+ FQ L P+G++D T++A+ Sbjct: 329 MSDPRVPKLRAKLGLT-----ENADDIRYDAKVAAAVRKFQESADLKPTGVLDDRTVKAL 383 Query: 166 NVPV-DLRIRQLQVNLMRIKKLLEQ----KMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 N P D +I + VN+ R + L +G YV++NIP +L+ ++ G + V+ Sbjct: 384 NTPKRDKQIDTILVNMERWRWLPRDLGAPALGDAYVILNIPDYTLKVMQRGAQVWTTRVV 443 Query: 221 VGRV-DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 G+ TP+L + I NP W +P SII + + L+QDP L + + + Sbjct: 444 TGKPGQHATPLLSETMKFITVNPTWNVPPSIIYNEYLPALQQDPTVLDRMGLRLERARDG 503 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 + + Q PG+ NA+ + F ++ Y HDTP+ LF R Sbjct: 504 SIHIS---------------QPPGEANALGRIRFNFPNKFLVYQHDTPDKHLFAREDRAF 548 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWS 397 + GC+RV+ LL RY E + + +K T +PV+ Y +A+ Sbjct: 549 SHGCMRVQYPDQYASVLLNIAMPGERYTPERIRSMYGSSEIDLKFPTPIPVNITYQTAFV 608 Query: 398 PKDSIIQFRDDIYGLDNVHVGII 420 +QFR D+YG D + I+ Sbjct: 609 DDAGKLQFRKDVYGRDATMISIL 631 >gi|146338286|ref|YP_001203334.1| putative signal peptide [Bradyrhizobium sp. ORS278] gi|146191092|emb|CAL75097.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS278] Length = 691 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 92/323 (28%), Positives = 153/323 (47%), Gaps = 28/323 (8%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S V +LR +L ++ +LD + +DA V +AV+ FQ L P+G++D T++A+ Sbjct: 317 MSDPRVPKLRAKLGLTENLD-----DIRYDAKVAAAVRKFQDSVDLKPTGVLDDRTVKAL 371 Query: 166 NVPV-DLRIRQLQVNLMRIKKLL----EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 N P D +I + VN+ R + L +G YV++NIP +L+ +++G + V+ Sbjct: 372 NTPKRDKQIDTVIVNMERWRWLPRELGAPAIGNAYVILNIPDYTLKVMQHGAQVWTTRVV 431 Query: 221 VGRV-DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 G+ TP+L + I NP W +P SII + + L+QDP L + + + Sbjct: 432 TGKPGQHATPLLSETMKFITVNPTWNVPPSIIYNEYLPALQQDPTVLDRMGLRLERARDG 491 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 + + Q PG+ NA+ + F ++ Y HDTP+ LF R Sbjct: 492 SIHIS---------------QPPGEANALGRIRFNFPNKFLVYQHDTPDKNLFAKEDRAF 536 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV--VKTRKTTPVKLATEVPVHFVYISAWS 397 + GC+RV+ LL T RY E + + +K T +PV+ Y +A+ Sbjct: 537 SHGCMRVQYPDQYASVLLNLTMPGERYTPERIRGMYGSSEIDLKFPTPIPVNITYQTAFV 596 Query: 398 PKDSIIQFRDDIYGLDNVHVGII 420 +QFR D+YG D + I+ Sbjct: 597 DDAGKLQFRKDVYGRDATMIAIL 619 >gi|328543832|ref|YP_004303941.1| peptidoglycan binding domain protein [polymorphum gilvum SL003B-26A1] gi|326413576|gb|ADZ70639.1| Putative peptidoglycan binding domain protein [Polymorphum gilvum SL003B-26A1] Length = 639 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 100/392 (25%), Positives = 161/392 (41%), Gaps = 25/392 (6%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL-HLGNSSVS-- 110 V+ ++S P E +A + G ++ + L G S Sbjct: 256 QAAGNVEAFLESRQP--QGEHFKALVAELAALRG-AQEGERIQISLATLLKPGTDSAELA 312 Query: 111 --VQRLRERLIISGDLDPSKGL-------SVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 V +R+ S L + + VK FQ + L P G+V +T Sbjct: 313 NIVAAIRK--NGSEALKADHAAILSAYDGGTLYGPELVDLVKAFQKENRLTPDGIVGKAT 370 Query: 162 LEAMNV-PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 + A+ +I +L++ L R + L + +G R V +N PA + VE+GK L V+ Sbjct: 371 IRALVGDSNADKIAKLELALERSR-WLPEDLGSRRVFINQPAFTATYVESGKAPLAMRVV 429 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VG QT + +I + +NPYW +P SII + + L DP YL + GK Sbjct: 430 VGTKANQTSFFYDQIETVEYNPYWGVPYSIIVNEKLPKLAADPGYLDKIGYEVTTASGKP 489 Query: 281 VFVEEVDWNSPEPPNFI--FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 + VDW++ RQ PG NA+ KI F +++ YMHDTP LFN VR Sbjct: 490 IPSASVDWHAVATKKLSVNVRQRPGSDNALGELKILFPNKHAIYMHDTPSKSLFNKDVRA 549 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSP 398 + GCVR+ + + +L S+ ++ + K + +PV+ Y +AW Sbjct: 550 FSHGCVRLSDPRAMAAAVL----GKSKDYVASRIAGGKNESEDVTGVIPVYVAYFTAWPE 605 Query: 399 KDSIIQFRDDIYGLDNVHVGIIPLPEDHPIDS 430 D I + D+Y D + + + Sbjct: 606 TDGTIGYYGDVYDRDMYLTRALEATRKTRLQA 637 >gi|254420106|ref|ZP_05033830.1| Putative peptidoglycan binding domain protein [Brevundimonas sp. BAL3] gi|196186283|gb|EDX81259.1| Putative peptidoglycan binding domain protein [Brevundimonas sp. BAL3] Length = 520 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 101/419 (24%), Positives = 179/419 (42%), Gaps = 32/419 (7%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDR-FDNFLARVDMGIDSDIPIISKET 74 L G L E + ++++ + + R + LAR + + + Sbjct: 112 TAAALAYGRVLAEGKVRPETVEDLWEMQKNRVDLPRGLSDALARNILLDWFEGLAPTDIG 171 Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGL--- 130 Y+ + ++GGWP P P + S + L +RL GDL + G Sbjct: 172 YQNLSAGYVRYRRLAAQGGWPAFPAGPTIEPNMSDRRIPALIDRLTAEGDLTAANGARLK 231 Query: 131 --SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 + + + ++ AV+ FQ+RHGL G + + T +++ + R RQ+ +NL R ++ L+ Sbjct: 232 TEGLTYGSELQQAVQGFQVRHGLGADGRIGTGTQRSLSASAEDRARQIALNLER-RRWLK 290 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 + + + VN AA + ++GK + VIVG + QTP L ++ NP W +P Sbjct: 291 RDVAPERIEVNTAAAIMVYWKDGKPVHSNRVIVGSAENQTPSLEKPFASVVANPPWYVPA 350 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 SI +++++ P YL N++++ + Q G A+ Sbjct: 351 SIARREILPK---GPAYLAANDMYVQNG--------------------TVIQRAGPKAAL 387 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K E ++HDTP FN +R + GCVRV+N ++ LL P Sbjct: 388 GYVKFELRDSYAIFLHDTPSKAAFNLSMRQRSHGCVRVQNAVEFARLLLSPDPV-KLAQF 446 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 + TR+TT V E+ V +Y +A+ + FR+D+YG D+ + + P Sbjct: 447 DTAQDTRETTRVTTGREISVRLLYWTAFVDGQGRVAFREDVYGRDDKLAQALGIAVSLP 505 >gi|228472762|ref|ZP_04057520.1| peptidoglycan-binding domain 1 protein [Capnocytophaga gingivalis ATCC 33624] gi|228275813|gb|EEK14579.1| peptidoglycan-binding domain 1 protein [Capnocytophaga gingivalis ATCC 33624] Length = 559 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 81/361 (22%), Positives = 153/361 (42%), Gaps = 12/361 (3%) Query: 72 KETIAQTEKAIAFYQDILSRGG-----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 + + Y+++ + ++ +G + ++ LR L G P Sbjct: 197 QPQQPFYKAMAQRYRELEKDTAEVLTPFAITDLKSYTIGYADSTILALRACLKHKGYESP 256 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + D+ + AVK FQ G+ G+ + T+ + + + L +N+ R++ Sbjct: 257 VQENPEQVDSLLVEAVKDFQRSIGIPADGVPGAQTMGYLLMTAKEKRDLLLLNMERLR-W 315 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + +G Y+LVNIP L + ++ V+VG + TPI + + F P W + Sbjct: 316 HNKDLGEDYILVNIPEYRLRLFHKDSLVFQTRVVVGNPETPTPIFSDSLRYVEFRPTWSV 375 Query: 247 PRSIIQKDMMALLRQDPQYL--KDNNIHMIDEKGKEVFVEEVDWNS--PEPPNFIFRQDP 302 P+SI++K+M+ + L + E KE+ +V+W+ F F + P Sbjct: 376 PQSIVRKEMIPNIISSRDSLKYAKRGYKLY-ENNKEIDPAKVNWHDERISKRAFYFVEAP 434 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 + N++ K Y+ + Y+HDTP LF N R + GC+RV L LL+ + Sbjct: 435 SENNSLGLVKFVLYNDMSIYLHDTPSKRLFGNTQRTYSHGCIRVEYPERLATKLLRGSEE 494 Query: 363 WSRYHIEEVVKTR-KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 W ++E + T V+ + Y++AW ++ + R+D Y D + I+ Sbjct: 495 WDAEKVKEAMTTGRDQRRVRPKQHFVIDVSYLTAWVDEEGKLIIRNDPYQFDKEQLKILN 554 Query: 422 L 422 Sbjct: 555 R 555 >gi|307946894|ref|ZP_07662229.1| peptidoglycan-binding domain 1 protein [Roseibium sp. TrichSKD4] gi|307770558|gb|EFO29784.1| peptidoglycan-binding domain 1 protein [Roseibium sp. TrichSKD4] Length = 681 Score = 346 bits (888), Expect = 4e-93, Method: Composition-based stats. Identities = 89/388 (22%), Positives = 167/388 (43%), Gaps = 18/388 (4%) Query: 51 RFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSV 109 + A D+ + + ++ + +A + + L +G SS Sbjct: 292 SLRDVQASTDVKVAMKAHQPQDDVFSELQSELAKLRAEDEEEDAIVIAPGTFLKVGRSSP 351 Query: 110 SVQRLRERLIISG---------DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 V+ + + +G L S + + + VK FQ + L G+V + Sbjct: 352 EVKNIVAAIRKNGSDALREKHMKLLVSYTGENLYSQEIANLVKGFQKENKLAADGIVGKN 411 Query: 161 TLEAMNV-PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 T+ AM +I ++++ + R ++ L ++G R V +N PA + E + L V Sbjct: 412 TIRAMVGETNAAKIAKIELAMER-RRWLPDELGERRVFINQPAFTATFYEGSSLPLSMRV 470 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 +VG+ QT + + + +NPYW +P SII +M+ L +P YL + G+ Sbjct: 471 VVGKKSNQTNFFYDNVEIVEYNPYWGVPYSIIVNEMIPKLAANPYYLDQAGYEVTTPSGR 530 Query: 280 EVFVEEVDWNSPEPPN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 +V V+W + RQ PG NA+ KI F ++++ YMHDTP LFN R Sbjct: 531 KVSSANVNWYAVASRQQSINVRQYPGAKNALGVVKILFPNKHHIYMHDTPAKSLFNKDTR 590 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 + GCVR+ + + +L S+ ++ + + K ++ ++PV+ Y +AW Sbjct: 591 AYSHGCVRLHDPKAMAAAVL----GKSKDYVSQQIAKGKNRQERVEGDLPVYVSYFTAWP 646 Query: 398 PKDSIIQFRDDIYGLDNVHVGIIPLPED 425 +++ D+Y D + + +D Sbjct: 647 NDAGQVEYFADVYDRDRHLLKALKKTDD 674 >gi|218530929|ref|YP_002421745.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] gi|218523232|gb|ACK83817.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium chloromethanicum CM4] Length = 648 Score = 345 bits (886), Expect = 7e-93, Method: Composition-based stats. Identities = 104/421 (24%), Positives = 173/421 (41%), Gaps = 41/421 (9%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET 74 + ++ S + +I + D LA G + + Sbjct: 191 LSAALALYARDARSGRVNPSAISRLITPTLDLPPADTVLTRLAASGAGAGDVLQSYNPRQ 250 Query: 75 --IAQTEKAIAFYQDILSRGGWP-ELPIRP-LHLGNSSVSVQRLRERLIIS----GDLDP 126 +K +A + ++G +LP P L LG S V LR R + G LD Sbjct: 251 PGYLALKKRLAGLRAGRTQGAPSVKLPDGPVLKLGMSDPRVPLLRSRFGLDASAAGTLDS 310 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ----LQVNLMR 182 + G + A+D V AVK FQ GL +G + +T+ A+ + + VN+ R Sbjct: 311 APGEADAYDRAVADAVKNFQRSRGLPANGTLTRATVAALASSSVPKTSASEADILVNMER 370 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + L ++G YV VN+P L+ +G+V + VIVG+ TP + + NP Sbjct: 371 WRWLPP-ELGPNYVFVNVPEFKLKVFRDGQVRDETRVIVGKPTSPTPTFSGMMEYAVVNP 429 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P SI+ K M+A R ++ G N RQ P Sbjct: 430 SWYVPPSIL-KQMLASGR-------TAGFEVVRRGG----------------NISLRQPP 465 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G+ NA+ K F +++ Y+HDTP LF+ R + GCVRV + +L P+ Sbjct: 466 GERNALGFIKFMFPNQHAVYLHDTPNRSLFSASTRAFSHGCVRVDDPFRFADAVL---PS 522 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 W++ +++++ + T ++L ++PVH Y +A + D+YG D + L Sbjct: 523 WTQERLKKLIGKGERT-LRLPEKLPVHLAYFTAEVDDLGSYRTLPDLYGYDGPMKVALGL 581 Query: 423 P 423 Sbjct: 582 A 582 >gi|254561917|ref|YP_003069012.1| hypothetical protein METDI3518 [Methylobacterium extorquens DM4] gi|254269195|emb|CAX25161.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 646 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 103/421 (24%), Positives = 173/421 (41%), Gaps = 41/421 (9%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET 74 + ++ + + +I + D LA G + + Sbjct: 189 LSAALALYARDARGGRVNPAAISRLITPTLDLPPADTVLTRLAASGSGAGDVLQSYNPRQ 248 Query: 75 --IAQTEKAIAFYQDILSRGGWP-ELPIRP-LHLGNSSVSVQRLRERLIIS----GDLDP 126 +K +A + ++G +LP P L LG S V LR R + G LD Sbjct: 249 PGYLALKKRLAGLRAGRTQGAPSVKLPDGPVLKLGMSDPRVPLLRSRFGLDASAAGTLDS 308 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ----LQVNLMR 182 + G + A+D V AVK FQ GL +G + +T+ A+ + + VN+ R Sbjct: 309 APGEADAYDRAVADAVKNFQRSRGLPANGTLTRATVAALASSSVPKTSASEADILVNMER 368 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + L ++G YV VN+P L+ +G+V + VIVG+ TP + + NP Sbjct: 369 WRWLPP-ELGPNYVFVNVPEFKLKVFRDGQVRDETRVIVGKPTSPTPTFSGMMEYAVVNP 427 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P SI+ K M+A R ++ G N RQ P Sbjct: 428 SWYVPPSIL-KQMLASGR-------TAGFEVVRRGG----------------NISLRQPP 463 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G+ NA+ K F +++ Y+HDTP LF+ R + GCVRV + +L P+ Sbjct: 464 GERNALGFIKFMFPNQHAVYLHDTPNRSLFSASTRAFSHGCVRVDDPFRFADAVL---PS 520 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 W++ +++++ + T ++L ++PVH Y +A + D+YG D + L Sbjct: 521 WTQERLKKLIGKGERT-LRLPEKLPVHLAYFTAEVDDLGSYRTLPDLYGYDGPMKVALGL 579 Query: 423 P 423 Sbjct: 580 A 580 >gi|260459428|ref|ZP_05807683.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] gi|259034982|gb|EEW36238.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] Length = 628 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 90/382 (23%), Positives = 167/382 (43%), Gaps = 26/382 (6%) Query: 57 ARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP---LHLGNSSVSVQR 113 V ++S P + Q E+ + P L G++S + + Sbjct: 252 QEVRTYLESRHP--QNPEYQALRVELESLQASAEN----EIVVDPKLLLKPGDTSPELPK 305 Query: 114 L----RERL-----IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 L L G++ S + + +K Q + G+ G++ T+ Sbjct: 306 LLTLIARNLDDEMGGAYGEMLSRLATSEVYVPELIPLIKAVQQKEGMKGDGVIGPRTVAL 365 Query: 165 M-NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 + R+ ++QV L ++ L +G V +N PA + +++G+ L++ ++GR Sbjct: 366 LAGTSKADRLLKVQVALEELR-WLPSDLGSPRVFINQPAFTASYIDDGQEKLKTRAVIGR 424 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 QT + +I ++ F+PYW +P+SII +M+ LR DP YL + D +GK + Sbjct: 425 TTNQTAFFYDQIKQVDFHPYWGVPQSIIVNEMLPRLRNDPGYLDRAGYEVTDSRGKRIPS 484 Query: 284 EEVDWNSPEPP-NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 V+W + RQ P + NA+ KI F +++ YMHDTP+ F +R + G Sbjct: 485 SAVNWGGYGANIPYSVRQQPSEANALGELKILFPNKHAIYMHDTPQKSFFKQDMRALSHG 544 Query: 343 CVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 CVR+++ + +L S +I E +K +T + ++PV+ Y +AW Sbjct: 545 CVRLQDPRGMAAAVLDT----SVDYIAEKLKHGHSTQ-DVTRKIPVYVAYFTAWPDMSGK 599 Query: 403 IQFRDDIYGLDNVHVGIIPLPE 424 +++ D+Y D+ + E Sbjct: 600 VEYFGDVYDRDSRLKQAMDATE 621 >gi|326336070|ref|ZP_08202242.1| peptidoglycan binding domain protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691579|gb|EGD33546.1| peptidoglycan binding domain protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 559 Score = 344 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 92/374 (24%), Positives = 159/374 (42%), Gaps = 17/374 (4%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGG--WPELPIRPLH---LGNSSVSVQ 112 + + ID+ P S + Y+++ +P I L +G + ++ Sbjct: 188 NLSLIIDALQPQQS-----FYKAMAQKYRELEKDTAITYPLFSITDLKSYGIGYADSTIL 242 Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 LR L G P +G D+ + AVK FQ G+ G+ + T+ + + + + Sbjct: 243 ALRAHLEYKGYKSPVQGEPQQVDSLLIEAVKEFQRSIGIPADGIPGALTMNYLQMNIKQK 302 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 L +N+ R++ + +G Y+LVNIP L + + V+VG TPI Sbjct: 303 RDLLLLNMERLR-WQNKDLGEDYILVNIPEYCLRLFHKDSLMFETRVVVGNPKTPTPIFS 361 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL--KDNNIHMIDEKGKEVFVEEVDW-- 288 + I F P W +P+SI++K+M+ + L + E KE+ +V+W Sbjct: 362 DSLRYIEFRPTWSVPQSIVRKEMIPNIISSGDSLKYAKRGYKLY-ENNKEIDPTQVNWKD 420 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + F F +DP + N++ K Y+ + Y+HDTP LF N R + GC+RV Sbjct: 421 DQLHKRIFYFVEDPSERNSLGLVKFVLYNDMSIYLHDTPSKRLFGNTQRTYSHGCIRVEY 480 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP-VKLATEVPVHFVYISAWSPKDSIIQFRD 407 +LLK + W + E + T K V + Y++AW K + R+ Sbjct: 481 PDQFATYLLKSSEDWDEQKVREAMDTGKNQYRVHPKKHFVIDISYLTAWVDKKGNLIIRN 540 Query: 408 DIYGLDNVHVGIIP 421 D Y D + ++ Sbjct: 541 DPYQFDKEQLKVLN 554 >gi|13470744|ref|NP_102313.1| hypothetical protein mll0533 [Mesorhizobium loti MAFF303099] gi|14021487|dbj|BAB48099.1| mll0533 [Mesorhizobium loti MAFF303099] Length = 626 Score = 344 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 88/334 (26%), Positives = 159/334 (47%), Gaps = 17/334 (5%) Query: 102 LHLGNSSVSVQRL----RERL-----IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 L G +S + +L L G+L S + + +K Q++ G+ Sbjct: 292 LKPGETSPELPKLLSLIARNLDDNMGGTYGELLSRLASSEVYVPELVPLIKAVQVKEGMK 351 Query: 153 PSGMVDSSTLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 G++ T+ + R+ ++QV L ++ L +G V +N PA + ++NG Sbjct: 352 GDGVIGPRTVALLAGTSKADRLLKVQVALEELR-WLPSDLGSPRVFINQPAFTASYIDNG 410 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 + L++ V+VGRV QT + +I ++ F+PYW +P+SII +M+ LR DP YL Sbjct: 411 EEKLKTRVVVGRVTNQTAFFYDQIKQVDFHPYWGVPQSIIVNEMLPRLRSDPGYLDRAGY 470 Query: 272 HMIDEKGKEVFVEEVDWNSPEPP-NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 + D +GK + V+W + + RQ P + NA+ KI F +++ YMHDTP+ Sbjct: 471 EVTDSRGKRIPSSAVNWGAYGANIPYSVRQQPSEANALGELKILFPNKHAIYMHDTPQKS 530 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 F +R + GCVR+++ + +L S ++ E +K +T + ++PV+ Sbjct: 531 FFKQDMRALSHGCVRLQDPRGMAAAVLGT----SVDYVAEKLKHGHSTE-DVTRKIPVYV 585 Query: 391 VYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPE 424 Y +AW +++ D+Y D+ + E Sbjct: 586 AYFTAWPDMSGKVEYFSDVYDRDSRLKQALDATE 619 >gi|188582120|ref|YP_001925565.1| peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] gi|179345618|gb|ACB81030.1| Peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] Length = 662 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 105/427 (24%), Positives = 175/427 (40%), Gaps = 42/427 (9%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET 74 + ++ + + +++ + D L G + I + Sbjct: 206 LSASLALYARDARGGRVNPAAISKLLTPTLDLPSADAVLTRLVAAGAGAGDALQIYNPRQ 265 Query: 75 --IAQTEKAIAFYQDILSRGGWP-ELPIRP-LHLGNSSVSVQRLRERLIIS----GDLDP 126 +K +A + ++G +LP P L LG S V LR R + G LD Sbjct: 266 PGYLALKKRLAGLRAGRTQGAPSVKLPDGPVLKLGMSDPRVPLLRSRFGLEKQAAGTLDA 325 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ----LQVNLMR 182 + G + A+D V AVK FQ GL SG + +T+ A+ P + L VN+ R Sbjct: 326 APGEADAYDGAVADAVKSFQRSRGLPASGTLTRATVAALANPSVPKTAASEADLLVNMER 385 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + L ++G YV VN+P L+ +G + + VIVG+ TPI + + NP Sbjct: 386 WR-WLPAELGPDYVFVNVPEFKLKVFRDGHLRDETRVIVGKPTSPTPIFSGMMEYAVVNP 444 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P SI+ K M+A R ++ RQ P Sbjct: 445 SWYVPPSIL-KQMLASGR-------TAGFEVVRRG----------------KTISLRQPP 480 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G+ NA+ K F ++++ Y+HDTP LF+ R + GCVRV + +L PT Sbjct: 481 GERNALGFIKFMFPNQHSVYLHDTPNRSLFSASTRAFSHGCVRVDDPFRFADAVL---PT 537 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 W+ +++++ + T ++L ++PVH Y +A + D+YG D + L Sbjct: 538 WTEERLKKLIGKGERT-LRLPEKLPVHLAYFTAEVDDLGSYRTLTDLYGYDGPMKAALGL 596 Query: 423 -PEDHPI 428 P + Sbjct: 597 APRSEAV 603 >gi|118589141|ref|ZP_01546548.1| hypothetical protein SIAM614_13853 [Stappia aggregata IAM 12614] gi|118438470|gb|EAV45104.1| hypothetical protein SIAM614_13853 [Stappia aggregata IAM 12614] Length = 656 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 86/335 (25%), Positives = 156/335 (46%), Gaps = 17/335 (5%) Query: 102 LHLGNSSVSVQRLRERLIISG--DLDPSKGLSVA-------FDAYVESAVKLFQMRHGLD 152 L G SS ++ + + +G +L + ++ + + VK FQ L Sbjct: 318 LKAGKSSPEMKNIVAAINKNGSEELKTAHAETLTAYDGAELYSPELVELVKAFQKEAKLT 377 Query: 153 PSGMVDSSTLEAMNV-PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 P G++ +T+ AM +I ++++ + R + L +++G R V +N A + G Sbjct: 378 PDGIIGKNTINAMVGETNAAKIAKVELAMERSR-WLPEQLGERKVFINQAAFTATYTAPG 436 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 + L V+VG+ QT + +I + +NPYW +P SII +M+ L +DP YL Sbjct: 437 EDPLSMRVVVGKKSNQTNFFYDKIQIVEYNPYWGVPYSIIVNEMLPKLAKDPSYLDRAGY 496 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 + G+++ VDW + RQ PG NA+ KI F ++++ YMHDTP Sbjct: 497 EVTTPGGRQISSSAVDWYAVASKQQSVNVRQYPGSSNALGEVKILFPNKHHIYMHDTPAK 556 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVH 389 LF +R + GC+R+++ + +L S+ ++ + + ++ ++PV+ Sbjct: 557 SLFKKDMRAYSHGCIRLQDPKAMAAAVL----GKSKDYVSSRISGGQNEQERVTGDIPVY 612 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPE 424 Y +AW +D I F D+Y D + I E Sbjct: 613 VSYFTAWPEQDGTIGFYTDVYDRDMHLLEAIEKTE 647 >gi|163852171|ref|YP_001640214.1| peptidoglycan binding domain-containing protein [Methylobacterium extorquens PA1] gi|163663776|gb|ABY31143.1| Peptidoglycan-binding domain 1 protein [Methylobacterium extorquens PA1] Length = 646 Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 105/421 (24%), Positives = 173/421 (41%), Gaps = 41/421 (9%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET 74 + ++ + + +I + D LA + + Sbjct: 189 LSAALALYARDARGGRVNPAAISRLITPTLDLPPADTVLTRLAASGAAAGDVLQGYNPRQ 248 Query: 75 --IAQTEKAIAFYQDILSRGGWP-ELPIRP-LHLGNSSVSVQRLRERLIIS----GDLDP 126 +K +A + ++G +LP P L LG S V LR R + G LD Sbjct: 249 PGYLALKKRLAGLRAGRTQGAPSVKLPDGPVLKLGMSDPRVPLLRSRFGLDASAAGTLDS 308 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPV---DLRIRQLQVNLMR 182 + G + A+D V AVK FQ GL +G + +T+ A+ N V + VN+ R Sbjct: 309 APGEADAYDRSVADAVKNFQRSRGLPANGTLTRATVAALVNSSVPKTSASEADILVNMER 368 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + L ++G YV VN+P L+ +G+V + VIVG+ TP + + NP Sbjct: 369 WRWLPP-ELGPNYVFVNVPEFKLKVFRDGQVRDETRVIVGKPTSPTPTFSGMMEYAVVNP 427 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P SI+ K M+A R ++ G N RQ P Sbjct: 428 SWYVPPSIL-KQMLASGR-------TAGFEVVRRGG----------------NISLRQPP 463 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G+ NA+ K F +++ Y+HDTP LF+ R + GCVRV + +L PT Sbjct: 464 GERNALGFIKFMFPNQHAVYLHDTPNRSLFSASTRAFSHGCVRVDDPFRFADAVL---PT 520 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 W++ +++++ + T ++L ++PVH Y +A + D+YG D + L Sbjct: 521 WTQERLKKLIGKGERT-LRLPEKLPVHLAYFTAEVDDLGSYRTLPDLYGYDGPMKVALGL 579 Query: 423 P 423 Sbjct: 580 A 580 >gi|110637822|ref|YP_678029.1| hypothetical protein CHU_1418 [Cytophaga hutchinsonii ATCC 33406] gi|110280503|gb|ABG58689.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406] Length = 558 Score = 342 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 92/375 (24%), Positives = 179/375 (47%), Gaps = 10/375 (2%) Query: 53 DNFLARVDMGIDSDIPII---SKETIAQTEKAIAFYQDILSRGGW-PELPI--RPLHLGN 106 D+ L R G +P I + + + + S+ + +LP R L LG+ Sbjct: 181 DSMLVRYFTGNLDSLPAILRPHYDIYESLRRTLRLVDSLGSQAIYNQKLPYLDRTLTLGD 240 Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + + ++ RL + + + L+ FD ++ ++++FQ GL SG +D T++ +N Sbjct: 241 TCYIISSVKRRLQSTSEYNF-DSLNNTFDEQLQESIRIFQTHVGLHASGKIDKKTIDKLN 299 Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 + VN+ R + L + ++LVNI +L + V +VIVGR Sbjct: 300 FTAAEVRGAILVNMERFR-WLPNDLPKEFILVNIADYTLRHFIDKNVVYTESVIVGREYT 358 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 TP+ + + I FNPYW +PRSI K+++ L+++P YL+ +N+ + + Sbjct: 359 STPVFEAMMTYIEFNPYWTVPRSIAVKEILPSLKRNPNYLQSHNMDLFRGNAQVAIPSSF 418 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + F +++PG N++ K+ F + + Y+HDTP LF R + GC+R+ Sbjct: 419 SNYTAGNFPFTIKENPGPKNSLGQVKLMFPNPYSIYLHDTPGKYLFEQEERSFSHGCIRL 478 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI-IQF 405 ++ + + +L ++ I+++++ +K + L ++PV Y + +S + I + F Sbjct: 479 KDPLKFALHILSKQ-GVTQADIDKIIRNKKNYVIPLKEKIPVMLTYFTCYSKRGDIHLYF 537 Query: 406 RDDIYGLDNVHVGII 420 DIYG D + + Sbjct: 538 FKDIYGKDKKILEAL 552 >gi|300024143|ref|YP_003756754.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525964|gb|ADJ24433.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 654 Score = 342 bits (879), Expect = 5e-92, Method: Composition-based stats. Identities = 88/377 (23%), Positives = 163/377 (43%), Gaps = 15/377 (3%) Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSV 111 D D G + + + + G +P + G S + Sbjct: 217 DTLATATDKGAYLKSLQPKHKQFELLRQKLLALRS-GGNGETINIPGGANIAPGKRSPQI 275 Query: 112 QRLRERLIISGDLDPSKG------LSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEA 164 +R+ L ++ P G +D + AVK +++ G+ P+ + ++ + Sbjct: 276 ALIRKALKVT---PPQAGPDGKPFDETFYDDDLARAVKAYKVEKGIDPPTPTITTALRRS 332 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 +N + +L N+ + + +G YV VNIP + V++G+V ++ G V Sbjct: 333 LNGDDGISEAKLLANMEEWR-WMPDDLGDFYVTVNIPDFKVRVVKDGEVVFDERIVTGSV 391 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 +RQTP+ + I+F P W +P SI K+++ LR L+ + +++ G+ + Sbjct: 392 NRQTPVFSDMMRTIVFQPRWNVPDSIKVKELLPGLRAGGDPLRRQGL-VMERNGRRISAT 450 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 ++W + NF Q P NA+ K F + + Y+HDTP LFN +R + GC+ Sbjct: 451 SINWYRSDIRNFHVYQPPSGGNALGVVKFLFPNAHAVYLHDTPSKGLFNESIRAFSHGCM 510 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR-KTTPVKLATEVPVHFVYISAWSPKDSII 403 RVRN + L +L W + + +++K + + L +PVH Y +A + D I Sbjct: 511 RVRNPVQLAEVVLAQDKGWDKIAVNDLLKNGPEENEIALDRPIPVHITYFTARAGDDGAI 570 Query: 404 QFRDDIYGLDNVHVGII 420 + DIYG + + Sbjct: 571 ESFGDIYGHEKRITLAL 587 >gi|302382528|ref|YP_003818351.1| ErfK/YbiS/YcfS/YnhG family protein [Brevundimonas subvibrioides ATCC 15264] gi|302193156|gb|ADL00728.1| ErfK/YbiS/YcfS/YnhG family protein [Brevundimonas subvibrioides ATCC 15264] Length = 521 Score = 342 bits (878), Expect = 6e-92, Method: Composition-based stats. Identities = 90/359 (25%), Positives = 157/359 (43%), Gaps = 31/359 (8%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGL--- 130 + Y+ I+ GGWP + G+S V + RL+ GD+ + G Sbjct: 173 YSNLSAGYVRYRRIIRNGGWPRFRAGASIEPGSSDTRVPIIITRLVAEGDMSEADGARLT 232 Query: 131 --SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 + + +E+AV+ FQ RHGL P G + + T ++ + R RQ+ +NL R ++ L+ Sbjct: 233 AQGLVYGPELETAVRSFQARHGLAPDGRIGAGTQSSLGASAEDRARQIALNLER-RRWLK 291 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 +++ + VN AA + ++G+ + V+ G QTP L ++ NP W +P Sbjct: 292 RELSPERIEVNTAAAIMVYWKDGRPVHSNRVVCGAPATQTPSLEKPFASVVANPPWYVPA 351 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 I +++++ + P YL N+++ + Q G A+ Sbjct: 352 GIARREILP---RGPAYLASQNMYVQNG--------------------TVIQRAGPTAAL 388 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 K E ++HDTP FN R + GCVRV+N ++ LL PT Sbjct: 389 GYVKFELRDSYAIFLHDTPSKAAFNLSTRQRSHGCVRVQNAVEFARILLSPDPTL-LSQF 447 Query: 369 EEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHP 427 + +TR+T ++ E+ V +Y +A+ + FR+DIY D V + + P Sbjct: 448 DTAQQTRETKRIQTGREISVRLLYWTAFVDGQGRVAFREDIYRRDQVLAEALGIAVSLP 506 >gi|308049138|ref|YP_003912704.1| peptidoglycan-binding domain 1 protein [Ferrimonas balearica DSM 9799] gi|307631328|gb|ADN75630.1| Peptidoglycan-binding domain 1 protein [Ferrimonas balearica DSM 9799] Length = 492 Score = 342 bits (877), Expect = 8e-92, Method: Composition-based stats. Identities = 96/336 (28%), Positives = 160/336 (47%), Gaps = 11/336 (3%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 L+ G W + G V +R +L GD P + S+ +D + +AV+ FQ R Sbjct: 156 LAIGAW-----GVIKPGEHHAEVAPIRRQLARLGDY-PGRTDSLRYDGGMVAAVQQFQRR 209 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV 208 HGL G++ T + + R R L L+R + ++LVNIP L+ V Sbjct: 210 HGLKADGVIGPRTRHWLRLDYQERARLLARALVR-QAHDRHYFAPDHLLVNIPDYRLDWV 268 Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 ++G+ + V+VG R+TP +HS + ++ NPYW +P SI++KD++ + D Y++ Sbjct: 269 QDGQSRFSARVVVGMPSRRTPRMHSELRSVVVNPYWNVPNSIMRKDLLPRILTDGSYVQR 328 Query: 269 NNIHMIDEKGKEVF--VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT 326 N ++D + + ++ +E+ + + + RQ PG N++ K + Y+HDT Sbjct: 329 NRFEVLDSENRPLWLSPDELSRLAYQGFPYRLRQRPGPGNSLGRYKFHLINSQAIYLHDT 388 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P+ LF R +SGC+RV N L LL+ ++ + + L + Sbjct: 389 PKQRLFERSTRAFSSGCIRVENADLLADLLLQAQSPEGPP-LKRYLNASGPRWLTLQQPL 447 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 V+ VY SAW QFR DIY L+ +G P Sbjct: 448 AVYLVYWSAWMD-GGRAQFRSDIYELEKAAIGRQPA 482 >gi|306843862|ref|ZP_07476457.1| cell wall degradation protein [Brucella sp. BO1] gi|306275617|gb|EFM57341.1| cell wall degradation protein [Brucella sp. BO1] Length = 681 Score = 341 bits (876), Expect = 9e-92, Method: Composition-based stats. Identities = 98/409 (23%), Positives = 171/409 (41%), Gaps = 25/409 (6%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 246 SARALRYAIDAGEGRIIADRLSGFHDLPRMRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 304 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 305 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 362 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 363 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 422 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ L G RYV+VN PA E+G+ L V++G QT ++++ ++FNP Sbjct: 423 LR-WLPHDFGKRYVMVNQPAYRAGYYEDGQQKLGMNVVIGSPTHQTYFFYNKVQTVVFNP 481 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQ 300 W +PRSII +M+ + +D YL N + GK+V V+W++ RQ Sbjct: 482 SWGVPRSIILNEMLPKVMRDTSYLDRNGYEVY-ANGKKVSASAVNWSAVATGKAHIGIRQ 540 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 P N++ KI F + ++ YMHDTP F +R + GC+R+ D+ +L + Sbjct: 541 KPSLDNSLGELKILFPNAHDIYMHDTPAKSYFKRDMRALSHGCIRLERPRDMAAAVLGTS 600 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 + + +K+ VPV+ Y +AW D I + DI Sbjct: 601 VKNLDKYF-----GKDERGIKVPEPVPVYIAYFTAWPDADGKIHYYGDI 644 >gi|240139503|ref|YP_002963978.1| hypothetical protein MexAM1_META1p2949 [Methylobacterium extorquens AM1] gi|240009475|gb|ACS40701.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 648 Score = 341 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 102/421 (24%), Positives = 173/421 (41%), Gaps = 41/421 (9%) Query: 15 FVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKET 74 + ++ + + +I + D LA G + + Sbjct: 191 LSAALALYARDARGGRVNPAAISRLITPTLDLPPADTVLTRLAASGAGAGDVLQSYNPRQ 250 Query: 75 --IAQTEKAIAFYQDILSRGGWP-ELPIRP-LHLGNSSVSVQRLRERLIIS----GDLDP 126 +K +A + ++G +LP P L LG S V LR R + G LD Sbjct: 251 PGYLALKKRLAGLRAGRTQGAPSVKLPDGPVLKLGMSDPRVPLLRSRFGLDASAAGTLDS 310 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ----LQVNLMR 182 + G + A+D V AVK FQ GL +G + +T+ A+ + + VN+ R Sbjct: 311 APGEADAYDRAVADAVKNFQRSRGLPANGTLTRATVAALASSSVPKTSASEADILVNMER 370 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + L ++G YV VN+P L+ +G++ + VIVG+ TP + + NP Sbjct: 371 WRWLPP-ELGPNYVFVNVPEFKLKVFRDGQMRDETRVIVGKPTSPTPTFSGMMEYAVVNP 429 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P SI+ K M+A R ++ G N RQ P Sbjct: 430 SWYVPPSIL-KQMLASGR-------TAGFEVVRRGG----------------NISLRQPP 465 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 G+ NA+ K F +++ Y+HDTP LF+ R + GCVRV + +L P+ Sbjct: 466 GERNALGFIKFMFPNQHAVYLHDTPNRSLFSASTRAFSHGCVRVDDPFRFADAVL---PS 522 Query: 363 WSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 W++ +++++ + T ++L ++PVH Y +A + D+YG D + L Sbjct: 523 WTQERLKKLIGKGERT-LRLPEKLPVHLAYFTAEVDDLGSYRTLSDLYGYDGPMKVALGL 581 Query: 423 P 423 Sbjct: 582 A 582 >gi|254418463|ref|ZP_05032187.1| Putative peptidoglycan binding domain protein [Brevundimonas sp. BAL3] gi|196184640|gb|EDX79616.1| Putative peptidoglycan binding domain protein [Brevundimonas sp. BAL3] Length = 497 Score = 341 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 98/435 (22%), Positives = 177/435 (40%), Gaps = 50/435 (11%) Query: 13 CFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK 72 L P GL+L E + +VL + H V+ L + P+++ Sbjct: 71 ADRHGLSAPDGLALSEAELTQAVL-TLAEALAHGRVDPASVETLWEMGRNQVDTPPLLAT 129 Query: 73 E----TIAQTEKAIA--------------FYQDILSRGGWPELPIR-PLHLGNSSVSVQR 113 T+A+T +A Y+ I RGGWP + + S + Sbjct: 130 AVDDGTLAETMAGLAPQDRGYQGLCDGFLRYRAIADRGGWPPFALGATIEPFASDPRLPA 189 Query: 114 LRERLIISGDLDPSKGL-----SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L RL + GDL + + + ++ AV++FQ+RHGL+ + +T A+++ Sbjct: 190 LLPRLRVEGDLTDAAAAMVGPSGGDYGSVLQEAVRVFQVRHGLEADARIGPATQRALSIS 249 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + R RQ+ +NL R ++ L++ + + VN A+ + ++G+ V+ G D T Sbjct: 250 AEARARQIALNLER-RRWLKRDVAPERIEVNTAASIMVYWKDGRPVHSMRVVTGDADNAT 308 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P L ++ NP W +P SI Q++++ + Y++ NN+ + + Sbjct: 309 PSLERPFASVVANPPWTVPTSIAQREILP---RGAGYMRANNMTIQNG------------ 353 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + Q G A+ K E ++HDTP F+ R + GCVRV++ Sbjct: 354 --------MVVQRAGPNAALGQVKFELQDSYAIFLHDTPSRGAFDQSFRHLSHGCVRVQD 405 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 + LL P + + + +T V + V +Y +A+ + FRDD Sbjct: 406 AVGFARLLLAPDPE-RLARFDAALDSGQTVRVATGRPIDVRLLYWTAFLDGQGRVAFRDD 464 Query: 409 IYGLDNVHVGIIPLP 423 IY D + + Sbjct: 465 IYRRDTRLAEALGIA 479 >gi|220920262|ref|YP_002495563.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219944868|gb|ACL55260.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 670 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 150/343 (43%), Gaps = 32/343 (9%) Query: 92 GGWPEL--PIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 GG P + P P L G V +R R + + A+DA V AV+ FQ Sbjct: 257 GGVPMVRLPKGPTLKPGMRDARVPLIRARFGL-----GPADDATAYDAAVAGAVERFQRE 311 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQ-LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 GL +G+++ T+ A+ P R L N+ R + L +G +V VNIP + Sbjct: 312 RGLAATGILNPETVAALAGPSPGRQEADLLANMERWR-WLPADLGKTHVWVNIPEYKVRV 370 Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 V +V + VIVG+ D TP+ + + NP W +P SI++ + + L +DP Y Sbjct: 371 VSGTRVVDEARVIVGKPDSPTPVFSGEMTYAVVNPSWNVPPSILKNEFLPRLARDPTYAA 430 Query: 268 DNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTP 327 ++ RQ PG+ NA+ K F + + Y+HDTP Sbjct: 431 RLGYEVVRRGNGIA----------------IRQPPGERNALGFIKFMFPNDHAVYLHDTP 474 Query: 328 EPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVP 387 LF R + GCVRV + +L PTW ++ ++ + T V L ++P Sbjct: 475 NRALFARSARALSHGCVRVDDPFRFAEVVLG--PTWPTERLKRLIGKGERT-VMLPEKLP 531 Query: 388 VHFVYISAWSPKDSIIQFRDDIYGLD---NVHVGIIPLPEDHP 427 VH Y + + + ++ DD+YG++ + +G+ P P Sbjct: 532 VHLAYFTLVADEAGTLRQFDDLYGINARVKMALGLSNEPLPAP 574 >gi|327405461|ref|YP_004346299.1| ErfK/YbiS/YcfS/YnhG family protein [Fluviicola taffensis DSM 16823] gi|327320969|gb|AEA45461.1| ErfK/YbiS/YcfS/YnhG family protein [Fluviicola taffensis DSM 16823] Length = 535 Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats. Identities = 84/324 (25%), Positives = 149/324 (45%), Gaps = 11/324 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +S V+ +E LI G LDP K D A+ FQ +GL G++ T +++ Sbjct: 217 DSLRCVELSKESLIDKGYLDPKKND----DESFWDAMSRFQADNGLKADGVIGIYTRKSL 272 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 N V + + +++ R + RY+ VNIP L N + V+VG+ + Sbjct: 273 NESVRFKCHRAILSMERWRWRAP--FPDRYLWVNIPEYKLRLFYNDSLLSEHRVVVGKPE 330 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 QTP L S++ I+ PYW P +I K+ + ++ + Y NN + + EV Sbjct: 331 NQTPELSSKLRAIISLPYWTQPHTIASKEFLPAIQNNSNYAAKNNYKVYRGE-TEVDPTT 389 Query: 286 VDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 ++W + NF F RQ+PG NA+ K EF ++ Y+HDTP FN +R + GC Sbjct: 390 INWKRYKEKNFPFRVRQEPGSDNALGLVKFEFNNKFGVYIHDTPSKGFFNKDIRAYSHGC 449 Query: 344 VRVRNIIDLDVWLL--KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 +R L ++L D +R ++ ++ ++ + L + + YI+ + Sbjct: 450 MRCELPDSLARFILTRDDRQKMTRDSLDTLIARKEHFTIHLHKPIQLQVDYITVTTNGKG 509 Query: 402 IIQFRDDIYGLDNVHVGIIPLPED 425 + F D+Y D ++ ++ + + Sbjct: 510 RLLFYPDVYDRDEKYLKMMKVYQK 533 >gi|332878616|ref|ZP_08446336.1| peptidoglycan binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683517|gb|EGJ56394.1| peptidoglycan binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 568 Score = 338 bits (868), Expect = 8e-91, Method: Composition-based stats. Identities = 90/328 (27%), Positives = 157/328 (47%), Gaps = 11/328 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G ++ +++LR+ L G ++ D+ + V+ FQ GL P G++ TL Sbjct: 240 YGYTAPVIEKLRKGLKQKGFEAIAEADPQTVDSTLIRTVQRFQESKGLTPDGVLGKQTLY 299 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 +N+ L++N+ R++ +G Y +VNIP L E V + V+VG+ Sbjct: 300 FINMNDTRTRDLLKLNMERMRVF-NNYLGDHYAIVNIPDFKLLLFEKDSVLFETRVVVGK 358 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL--RQDPQYLKDNNIHMIDEKGKEV 281 TPI I + F P W +P+SII+K+M+ + + +P+ K+ M E GK+V Sbjct: 359 SATSTPIFTDTIQYVEFRPTWSVPQSIIKKEMIPQIVSQANPEKYKNRGYTMY-ENGKKV 417 Query: 282 FVEEVDWN--SPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 +V+WN + F F + P N++ K + + Y+HDTP F+ R Sbjct: 418 DPTQVNWNDPAVHKRGFYFVEAPSANNSLGLVKFILTNGMSIYLHDTPSKHFFDRDYRAL 477 Query: 340 TSGCVRVRNIIDLDVWLLKD---TPTWSRYHIEEVVKTRKTT--PVKLATEVPVHFVYIS 394 + GC+RV+N +L LLK+ W+ + E ++ K + + L T+ V+ +Y + Sbjct: 478 SHGCIRVQNPSELAYHLLKNEESQTPWTIEKVTEAMQNTKRSQYRIALKTKYKVNIIYYT 537 Query: 395 AWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 AW + + ++DIY LD + I Sbjct: 538 AWVDNNGEVVIKNDIYELDTPQLNEIKR 565 >gi|150026170|ref|YP_001296996.1| hypothetical protein FP2133 [Flavobacterium psychrophilum JIP02/86] gi|149772711|emb|CAL44194.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 566 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 101/385 (26%), Positives = 182/385 (47%), Gaps = 53/385 (13%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGN------SSVSVQRLRERLIISGDLDPSK 128 ++A+ +L+ +P L + S+ +V+ ++ RL+ D+ + Sbjct: 182 YKNLKQAL----QVLNAFPKDSVPFVILKPKDKIALNKSNKAVKIIKSRLMYWHDMKQAN 237 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 ++ +D + AVK FQ RHGL P G++ T+ A+N + RI Q+ NL R + Sbjct: 238 TITNIYDKETQDAVKTFQSRHGLTPDGLIGKGTILALNFTKNQRIEQVISNLERWR-WFA 296 Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR 248 G Y+L+NIP SL A++N + ++VG+ RQTPIL S+++ I NP W +P Sbjct: 297 SDFGQNYLLINIPDYSLLAIKNNDTMQKQRIVVGKDTRQTPILESKVSNINLNPNWTVPP 356 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 +I+++D+ +D K + ++D K KE+ W + + + Q+PGK +++ Sbjct: 357 TILKEDIYPDAIKDKGAFKKKGLVILDHKNKEINPWS--WTIEDAKKYKYVQNPGKNSSL 414 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 KI F ++ + Y+HDT F R +SGCVR+ +++ +L+ + W+ I Sbjct: 415 GLMKINFPNKYSVYLHDTNHRDFFGLNYRSLSSGCVRLEKPLEMAEYLINNPEKWNLKTI 474 Query: 369 EEVVKTR---------------------------------------KTTPVKLATEVPVH 389 ++ KT V++A ++ +H Sbjct: 475 QDTTDINHYNKLQKEKEKKIAIKNAKLLAKNPLLVIPEKTYPKQELKTIVVRIADDIFIH 534 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDN 414 +Y +AW K+ +QFR+DIY LD+ Sbjct: 535 QLYWTAWLQKE-TLQFREDIYCLDS 558 >gi|319957846|ref|YP_004169109.1| erfk/ybis/ycfs/ynhg family protein [Nitratifractor salsuginis DSM 16511] gi|319420250|gb|ADV47360.1| ErfK/YbiS/YcfS/YnhG family protein [Nitratifractor salsuginis DSM 16511] Length = 575 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 106/408 (25%), Positives = 184/408 (45%), Gaps = 24/408 (5%) Query: 27 VEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIA--- 83 V+ P+ L + V +D ++ + + KE K + Sbjct: 139 VDWPLVQQKLKRL---KETQDVQAAWDIRPKKLPETKELYQVLNQKELAPYLRKQLPLEP 195 Query: 84 FYQDILS-------RGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 Y+ +L+ +P+L R L + ++ + +++ L GD FD Sbjct: 196 RYRKLLALLAKYRTMPNFPKLSYGRTLRINSTDSRIPQIKRMLKFFGDYPKHFAEDNQFD 255 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 A++ F+ R L P VD+ ++A+N +R++ VNL ++K L + Y Sbjct: 256 RPFAQAIRSFRSRFKLPPGNTVDNKVIQALNTTKKEYLRKILVNLEKLK-LYPHRWEPDY 314 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 V VN+P + NG+ S V+VGR+DR TPI S++ ++ NP W IP +++++D+ Sbjct: 315 VEVNVPEFKMRFYRNGQPIFSSDVVVGRIDRPTPIFDSKMTYMVLNPTWTIPDNLVRRDL 374 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP-------EPPNFIFRQDPGKINAM 308 + +L+++P YL+ +NIH+ E+D+ P + F Q P NA+ Sbjct: 375 IPMLKKEPDYLQKHNIHVYTSYKPNAPEVELDFEKLFSYEHDTRPIPYRFVQFPSDQNAL 434 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT-WSRYH 367 K F ++ + Y+HDT LF R +SGC+RV D LL +S Sbjct: 435 GRVKFMFPNKYSVYLHDTDNKKLFGYRYRVFSSGCMRVAKPFDFMDLLLHYARGNYSEGK 494 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 I+E++ + K T ++L +PVH VY + + F DIY D + Sbjct: 495 IQEILASNKPTTIRLKKAIPVHIVYFTV-RREGKKDYFFYDIYLYDKM 541 >gi|34558804|gb|AAQ75149.1| conserved hypothetical protein [Alvinella pompejana epibiont 6C6] Length = 559 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 102/380 (26%), Positives = 184/380 (48%), Gaps = 18/380 (4%) Query: 50 DRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI----RPLHLG 105 R N LA+ D+ + + + A+ Y+ I ++ P +P L G Sbjct: 157 KRLFNALAKNDIVSLFNSLTPLPKRHSDLIDALEIYRAIPTK--LPRIPYTRNFSGLKFG 214 Query: 106 NSSVSVQRLRERLIISGDLDPSKGL--SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 + + +++ERL + GD G S FD ++SA+ ++ R L+ +G++D T+ Sbjct: 215 DVDRKIAKIKERLAMEGDYPKESGAIYSDIFDEKLKSAIYRYKERFNLEQNGIIDKVTIY 274 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 MN P+ L I + NL ++K + K +++VNIP +++ ++G L + +VGR Sbjct: 275 YMNKPISLLIDSIITNLDKLK-VSPNKFPDEFIMVNIPDFTMDYYKDGISNLHMSAVVGR 333 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 R TPI HS++ + NP W IP ++++KD++ L ++P Y++ +NIH+ + + Sbjct: 334 DKRPTPIFHSKMTYLELNPNWNIPENLVRKDLIPTLIEEPDYMEKHNIHVFYGWKDKKEI 393 Query: 284 EEVDWNSPEPP--------NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 + +D N + F Q PG NA+ K F ++ + Y+HDT LF Sbjct: 394 KNLDINKLTRYLDEKNGHIPYRFVQYPGDDNALGRIKFMFPNKYSVYLHDTDNKSLFERR 453 Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 R +SGC+R+ L L + I+ +T K ++ +PV+ Y + Sbjct: 454 YRVYSSGCMRISKPFQLLEALKPHLKSSDIAQIDRYRQTLKNKIMRFTKSLPVYTTYFTV 513 Query: 396 WSPKDSIIQFRDDIYGLDNV 415 + +D ++ FR DIYG D + Sbjct: 514 F-KRDGMVFFRKDIYGYDKM 532 >gi|170741335|ref|YP_001769990.1| peptidoglycan binding domain-containing protein [Methylobacterium sp. 4-46] gi|168195609|gb|ACA17556.1| Peptidoglycan-binding domain 1 protein [Methylobacterium sp. 4-46] Length = 654 Score = 332 bits (853), Expect = 5e-89, Method: Composition-based stats. Identities = 92/333 (27%), Positives = 152/333 (45%), Gaps = 27/333 (8%) Query: 96 ELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 LP P L G V +R R + S + A+DA V A++ FQ GL + Sbjct: 260 RLPKGPVLKPGMRDARVPLIRARFGL-----GSADDATAYDAAVAGAIERFQRERGLAAT 314 Query: 155 GMVDSSTLEAMNVPVDLRIRQ-LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 G++D T+ A+ P R L N+ R + L ++G +YV VNIP + +E G+V Sbjct: 315 GILDPRTVAALAGPSPGRQEADLLANMERWR-WLPAELGRKYVWVNIPDLKVRVMEGGRV 373 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 + VIVG+ D TPI ++ + NP W +P SI++ + + L +DP Y + Sbjct: 374 VDEARVIVGKPDSPTPIFSGEMSYAVVNPSWNVPPSILKNEFLPRLARDPSYAARLGYQV 433 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 + + RQ PG+ NA+ K F + + Y+HDTP LF Sbjct: 434 VRKGNSIA----------------VRQPPGERNALGFIKFMFPNEHAVYLHDTPNRTLFA 477 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 R + GCVRV + +L PTW +++++ + T V L ++PVH Y Sbjct: 478 RGARALSHGCVRVDDPFRFAEVVLG--PTWPTERLKKLIGKGERT-VMLPEKLPVHLAYF 534 Query: 394 SAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDH 426 + + + ++ +D+YG++ + L + Sbjct: 535 TLVADEAGGLREAEDLYGINARVKVALGLSNEA 567 >gi|237757093|ref|ZP_04585533.1| peptidoglycan-binding domain 1 protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237690747|gb|EEP59915.1| peptidoglycan-binding domain 1 protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 506 Score = 332 bits (851), Expect = 8e-89, Method: Composition-based stats. Identities = 107/414 (25%), Positives = 193/414 (46%), Gaps = 23/414 (5%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPII---SKET 74 L L + L L I + E N +++ + ++P + + E Sbjct: 100 LTLKICLDLYNGTIDPKDIFETWNLPKKKF--NKYKELATIIKENQLENLPQLCQPNHEG 157 Query: 75 IAQTEKAIAFYQDILSRGGWPELPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 + ++ Y +I++ +P LP + L V++LR+ L I G D S Sbjct: 158 YLTLRQYLSKYYEIMA--LYPSLPKINKKLKPKMKDKEVKKLRQLLYIYGFYD-GNTNSY 214 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + +VK FQ L+ G++ TL +N P++ I +++N+ + + L + + Sbjct: 215 IYDDELLESVKRFQESRNLEADGVIGVKTLNELNRPLNELIDIIKINMEKYR-WLPENLA 273 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD----RQTPILHSRINRIMFNPYWVIPR 248 + VNIP+ L+ E+ L + VIVG+ R TPI + +I +I NPYW +P+ Sbjct: 274 ESRIEVNIPSFELKYYEDNTEILSTEVIVGKNYEEDFRPTPIYYGKIEKITINPYWYVPK 333 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKIN 306 I KD++ ++ +P++L+D + + G+EV ++++W NF F Q PG N Sbjct: 334 KIAAKDILKKIKSNPRFLEDFSFKVFY-NGQEVDYKKINWWEYNENNFGFTLIQSPGNKN 392 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 + KI F + Y+HDTP LF + R +SGC+RV + + L ++L + Sbjct: 393 FLGRIKITFSNPFQVYLHDTPFKELFKHKKRAFSSGCIRVNDPLSLTSYILNK----DKS 448 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 I + + KT + ++ V+ Y +A D I F +D+Y D + I+ Sbjct: 449 EILNYIDSNKTIGLTPCKDIYVYIFYFTALVKND-TIYFYEDLYNFDIKILNIM 501 >gi|315223727|ref|ZP_07865577.1| peptidoglycan binding domain protein [Capnocytophaga ochracea F0287] gi|314946302|gb|EFS98301.1| peptidoglycan binding domain protein [Capnocytophaga ochracea F0287] Length = 571 Score = 331 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 95/332 (28%), Positives = 157/332 (47%), Gaps = 11/332 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + G + V+ LR L G + D+ + A+K FQ +GL P G + Sbjct: 239 KNFVYGYTDPEVESLRNALAKKGFRSVPEIDPQEVDSTLIWALKRFQRSNGLIPDGSLGI 298 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 TL +N+ + L++N+ R++ +G Y++VNIP L + ++ V Sbjct: 299 QTLNRLNMNKARQRDLLRLNMERMRVF-NNDLGDDYIIVNIPDYKLFLYHKDSLIYQTKV 357 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL--RQDPQYLKDNNIHMIDEK 277 +VGR TPI I + F P W +P+SII+K+M+ + ++DP+ K+ M E Sbjct: 358 VVGRAQTSTPIFTDSIRSVEFRPTWSVPQSIIKKEMIPQMLLQEDPEKYKNRGYTMY-EN 416 Query: 278 GKEVFVEEVDWNSP--EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 G+ + EVDW +P F F + P + N++ K + + Y+HDTP LF Sbjct: 417 GRVIDPLEVDWTNPLVHKRAFYFVEAPSERNSLGLVKFLLNNNMSIYLHDTPSKYLFERE 476 Query: 336 VRFETSGCVRVRNIIDLDVWLLK---DTPTWSRYHIEEVVKTRKTT--PVKLATEVPVHF 390 R + GCVRV+N L +LLK D +W+ +++ + K VKL T+ ++ Sbjct: 477 QRALSHGCVRVQNPSQLAYYLLKNEGDGKSWTEEKVKDFMNNNKRNQYRVKLNTKYMINI 536 Query: 391 VYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +Y + K ++DIY LDN + I Sbjct: 537 LYYTISVDKKGEATIKNDIYDLDNEQLKDIKR 568 >gi|256820616|ref|YP_003141895.1| ErfK/YbiS/YcfS/YnhG family protein [Capnocytophaga ochracea DSM 7271] gi|256582199|gb|ACU93334.1| ErfK/YbiS/YcfS/YnhG family protein [Capnocytophaga ochracea DSM 7271] Length = 571 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 98/332 (29%), Positives = 157/332 (47%), Gaps = 11/332 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + G + V+ LR L G K D+ + A+K FQ +GL P G + Sbjct: 239 KNFVYGYTDPEVESLRNALAKKGFGSVPKIDPQEVDSTLIWALKRFQRSNGLIPDGSLGI 298 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 TL +N+ + L++N+ R++ +G Y++VNIP L + ++ V Sbjct: 299 QTLNRLNMNKARQRDLLRLNMERMRVF-NNDLGDDYIIVNIPDYKLFLYHKDSLIYQTKV 357 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL--RQDPQYLKDNNIHMIDEK 277 +VGR TPI I I F P W +P+SII+K+M+ + ++DP+ K+ M E Sbjct: 358 VVGRAQSSTPIFTDSIRSIEFRPTWSVPQSIIRKEMIPQMLLQEDPERYKNRGYTMY-EN 416 Query: 278 GKEVFVEEVDWNSP--EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 GK + EVDW +P F F + P + N++ K + + Y+HDTP LF Sbjct: 417 GKVIDPLEVDWTNPLVHKRAFYFVEAPSERNSLGLVKFLLNNNMSIYLHDTPSKYLFERE 476 Query: 336 VRFETSGCVRVRNIIDLDVWLLK---DTPTWSRYHIEEVVKTRKTT--PVKLATEVPVHF 390 R + GCVRV+N L +LLK D +W+ +++ + K VKL T+ ++ Sbjct: 477 QRALSHGCVRVQNPSQLAYYLLKNEGDGKSWTEEKVKDFMNNNKRNQYRVKLNTKYMINI 536 Query: 391 VYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +Y + K ++DIY LDN + I Sbjct: 537 LYYTISVDKKGEATIKNDIYDLDNEQLKDIKR 568 >gi|294011534|ref|YP_003544994.1| putative peptidoglycan binding domain protein [Sphingobium japonicum UT26S] gi|292674864|dbj|BAI96382.1| putative peptidoglycan binding domain protein [Sphingobium japonicum UT26S] Length = 484 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 99/363 (27%), Positives = 159/363 (43%), Gaps = 37/363 (10%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRER 117 R+ S P + K +A Y+ I GGWP L SS V R R Sbjct: 138 RLPQWALSLTPPYAG--YDGLRKGLANYERIRDAGGWPTLTA------QSSPDVV--RAR 187 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 + I SV + ++ Q R+GL+P+G++D+ TL +NVPVD RI + Sbjct: 188 IAIE-------DKSVTPGEKLVDVLQRAQRRYGLNPTGLLDARTLRELNVPVDDRIAAIM 240 Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINR 237 N+ R + + +++ + V VNI AA L E + + G D TP+L S I+ Sbjct: 241 ANMERWR-WMPRQLPVNRVQVNIAAAVLTVFEGDQPVTSMRAVTGAPDNATPMLVSSIHS 299 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 I+ NP W +P SI ++++ R L ++ +PE Sbjct: 300 IVVNPPWNVPASIAKRELWPKGR---AALIRQGYKIV--------------GTPETGE-R 341 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 Q G +A+ K +F + Y+HDTP F++ R + GC+R+ + L ++ Sbjct: 342 IVQPAGPNSALGRLKFDFNNPFAVYLHDTPSRAKFSSYDRLASHGCIRLEKPVPLAELMV 401 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 P I+ ++ T KT V L EV V+ +Y +A++ + + FR D YG D + Sbjct: 402 ASDPDL-AGKIQSLIDTGKTQRVSLPKEVAVYLLYWTAFAGNNGTMNFRSDPYGWDKLLA 460 Query: 418 GII 420 I Sbjct: 461 AKI 463 >gi|120554149|ref|YP_958500.1| hypothetical protein Maqu_1223 [Marinobacter aquaeolei VT8] gi|120323998|gb|ABM18313.1| conserved hypothetical protein [Marinobacter aquaeolei VT8] Length = 318 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 90/277 (32%), Positives = 143/277 (51%), Gaps = 5/277 (1%) Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 H L+ G+V T AMNVPV +RI Q++VNL R + +L + +VLV+I + Sbjct: 42 QHHLLEEDGIVGRQTRAAMNVPVSVRIDQIRVNLERARWMLHGE-AEEFVLVDIAGYRIS 100 Query: 207 AVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 RS ++VG+ R+TP L S I + NP W +P +I +DM+ +R+D YL Sbjct: 101 YFRPNGEIWRSRIVVGQPYRRTPSLRSMITHLTVNPTWTVPPTIFSEDMLPRIRRDITYL 160 Query: 267 KDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT 326 N+ +++ G+ + +DW P + RQDPG NA+ + F + + Y+HDT Sbjct: 161 DRQNLSVLNFYGQWLDPNSIDWW--NPGGIMLRQDPGPTNALGQVVLRFPNNHLVYLHDT 218 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P LF+ +R +SGC+RV+ +++L LL+DT + I V+ +T + L V Sbjct: 219 PSQGLFSRQLRAFSSGCIRVQGVLELAQLLLEDT--DTAADINSVIAEGETRNIHLKRSV 276 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLP 423 PV Y + D + FR D+Y D + + P Sbjct: 277 PVILHYWTVHPGMDRELVFRPDVYQHDASLLRALDRP 313 >gi|188995993|ref|YP_001930244.1| Peptidoglycan-binding domain 1 protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931060|gb|ACD65690.1| Peptidoglycan-binding domain 1 protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 506 Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats. Identities = 102/414 (24%), Positives = 190/414 (45%), Gaps = 23/414 (5%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA- 76 L L + L L I+ + N +++ + ++P + + Sbjct: 100 LTLKICLDLYNGTINPKEIFRTWNLPKKKF--NKYKELANIIKENQLENLPELCQPNYDG 157 Query: 77 --QTEKAIAFYQDILSRGGWPELPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 +K ++ Y +I++ P LP + L V++LR+ L I G + S Sbjct: 158 YLALKKYLSKYHEIIASN--PYLPKINKKLKPKTKDKEVKKLRQLLYIYGFYN-GNTNSD 214 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMG 192 +D + +VK FQ L+ G++ TL +N P++ I +++N+ + + L + + Sbjct: 215 VYDDELLESVKRFQESRNLEADGIIGVKTLSELNRPLNELIDIIKINMEKYR-WLPENLA 273 Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD----RQTPILHSRINRIMFNPYWVIPR 248 + +NIP+ L+ EN L + VIVG+ R TPI + +I +I NPYW +P+ Sbjct: 274 ENRIEINIPSFELKYYENDIEVLSTEVIVGKNYEEDFRPTPIYYGKIEKITLNPYWYVPK 333 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKIN 306 I KD++ ++ +P++L+D + G+EV ++++W NF F Q PG N Sbjct: 334 KIAAKDILKKIKSNPRFLEDFGFKVFY-NGQEVDYKKINWRKYNESNFNFTLIQSPGDKN 392 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 + +I F + Y+HDTP LF R +SGC+R+ + + L ++L + Sbjct: 393 FLGRIRITFSNPFQVYLHDTPFKELFKQKRRAFSSGCIRINDALSLTSYILNK----DKN 448 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 I + + KT + + + V+ Y +A D I F +D+Y D + ++ Sbjct: 449 EIVNFINSNKTLDLVPSKNIYVYIFYFTALVKND-TIYFYEDLYNFDKKILNLM 501 >gi|300022605|ref|YP_003755216.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299524426|gb|ADJ22895.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 597 Score = 329 bits (843), Expect = 7e-88, Method: Composition-based stats. Identities = 98/386 (25%), Positives = 154/386 (39%), Gaps = 33/386 (8%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ----------DILSR 91 + S D + I S + + + ++ + I R Sbjct: 150 QPSLSSAQDILAKISQSQEPDITLREWQPSADQFLKLKALLSDLRSKQSGEPQDLQIARR 209 Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 G L + S V L++R + ++G FDA + +AVK FQ GL Sbjct: 210 G-------SSLQSKSKSPEVATLKKRFGV----ASAQGEETVFDAALVAAVKTFQASAGL 258 Query: 152 DPSGMVDSSTLEAMNVPV----DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 G V +T A+ RI + N+ + + Q++G V VNIPA S+ Sbjct: 259 RADGFVGPATRAALAGGGPENNADRIAAVIANMEEWR-WMPQELGATNVFVNIPAFSIRL 317 Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 ++G V+VG D+QTPI + I+ P W +P SI + L Sbjct: 318 TKDGAPVFEDRVVVGTADKQTPIFSKSMKTIVLRPEWNLPDSI----KLTALLSGRSV-- 371 Query: 268 DNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTP 327 + +++ G+ + V+W + Q G NA+ K F +++ Y+HDTP Sbjct: 372 EQQGYVVMRNGRTIDSTRVNWAKANLREYTIFQPSGDDNALGLVKFLFPNKHAVYLHDTP 431 Query: 328 EPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR-KTTPVKLATEV 386 LFN VR + GCVRVRN LL + + ++ +V+ K V L T + Sbjct: 432 SRHLFNERVRLYSHGCVRVRNPQVFAQDLLDIDRGAAAFDVKRLVRKGPKDNNVTLETPI 491 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGL 412 PVH Y + W D Q+ D YG Sbjct: 492 PVHVGYFTVWVGDDGQPQYFKDYYGH 517 >gi|42522720|ref|NP_968100.1| putative periplasmic protein YcbB [Bdellovibrio bacteriovorus HD100] gi|39573916|emb|CAE79093.1| putative periplasmic protein YcbB [Bdellovibrio bacteriovorus HD100] Length = 577 Score = 328 bits (842), Expect = 9e-88, Method: Composition-based stats. Identities = 100/393 (25%), Positives = 182/393 (46%), Gaps = 31/393 (7%) Query: 56 LARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI--RPLHLGNSSVSVQR 113 + G+D P + ++ +A+++ I + GGW ++ + + L GN ++ Sbjct: 182 AKALVAGLDKFAP--AHLRYVDLKQLLAYFRSIQTAGGWSQIKLAKKSLRQGNQDPAIPA 239 Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 +R RL G PS G +DA ++ ++ Q +G+ G++ + + +N V R+ Sbjct: 240 IRGRLQSLGYAVPSTG--DIYDAELKRVIEDVQGVNGMGVDGVIGNEVMTFLNTSVADRV 297 Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 QL+VN+ +++ L + M R+V VN+ + + G+ + I G+ R+TP+L + Sbjct: 298 FQLEVNMEKLR-WLPKAMESRHVFVNLATTEFQFFDEGRKIMHFKTINGQSYRRTPVLRN 356 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQ--DPQYLKDNNIHMID-EKGKEVFVEEVDWNS 290 ++ + NP W P SII KD + LR +YL+ + + +I GKEV + S Sbjct: 357 MLSFVELNPTWTAPESIIFKDKINTLRGKDGQEYLRKHRMRLIRKSDGKEVIPSDELLQS 416 Query: 291 PEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 NF + RQDP + NA+ S K + + Y+H T P LF+ R +SGCVR+ + Sbjct: 417 LSRSNFPYLLRQDPWRKNALGSIKFPLPNEWSIYLHHTDNPDLFDESKRHLSSGCVRLED 476 Query: 349 IIDLDVWLLKDTPT---------WSRYHIEEVVKTRK----------TTPVKLATEVPVH 389 ++L++ W + +E V K + L VPV+ Sbjct: 477 PFTFAEYILRNNVAVKSTQTDDYWPKDKLESFVPPEKSEAYVDRENWEKRIHLKVPVPVY 536 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +Y++ +D ++F D+YG D + Sbjct: 537 LMYLTVDRAQDGAVRFVKDVYGQDERVAKTMKA 569 >gi|332186707|ref|ZP_08388450.1| putative peptidoglycan binding domain protein [Sphingomonas sp. S17] gi|332013359|gb|EGI55421.1| putative peptidoglycan binding domain protein [Sphingomonas sp. S17] Length = 476 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 100/406 (24%), Positives = 160/406 (39%), Gaps = 28/406 (6%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDR-FDNFLARVDMGIDSDIPIISKETIAQ 77 L +L + L E+ S N L D+ D + Sbjct: 80 ALRFASALARGATDPTKLYEVYTIPRPSPDLKAGLANALRSGDLTKWLDGLAPQDSNYKK 139 Query: 78 TEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 A + + + G S + + L+I L P + Sbjct: 140 LSDAYLKLKQQPQGNDGQVVDTGEAIKPGASDPRMPAIVRELVILDYLTPDAAQGDRYTP 199 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 + AV+ Q +G+ P G++ + L +N+ R R + V + R++ LE+ + Sbjct: 200 AIGDAVRRMQADYGMKPDGIIGNEALAILNMSDADRARAIAVAMERLR-WLERTPPATRI 258 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 VNI AA L +GK+ V+VG D +TP L S I R++ NP W +PRSI +K++ Sbjct: 259 DVNIAAARLSYWRDGKIVDSRRVVVGEPDTETPQLGSPIFRLVANPTWTVPRSIQKKEL- 317 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 ++ YL+ NN+ + D Q PG N++ K + Sbjct: 318 --AQKGAGYLRANNMELKDGW--------------------IVQQPGPKNSLGLAKFDMQ 355 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 + + Y+HDTP LF V R + GCVRV + + L KD +H +T K Sbjct: 356 NDHAIYLHDTPAKPLFAMVQRQRSHGCVRVEDALGFAEMLAKDEGVVDEWH--RARETGK 413 Query: 377 TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 T VKL ++PV +Y + KD R+D YG D+ + Sbjct: 414 ETFVKLPRQIPVRLLYQTVLFDKDGEPIVRNDPYGWDDRVGSALGF 459 >gi|157961829|ref|YP_001501863.1| peptidoglycan-binding domain-containing protein [Shewanella pealeana ATCC 700345] gi|157846829|gb|ABV87328.1| Peptidoglycan-binding domain 1 protein [Shewanella pealeana ATCC 700345] Length = 434 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 99/395 (25%), Positives = 180/395 (45%), Gaps = 14/395 (3%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTE 79 L L +++ ++ ++ + F + + + + +I ++ IA Sbjct: 46 LAFDLGVIDSAAESTNTVGLVKLLNKELFQVEF----TSLSLSTEQYLKLIKRKDIASYR 101 Query: 80 KAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDA 136 + I Y+ + R WP + L LG V +LR L+ GD++P + +D Sbjct: 102 RLIKQYKAL-DRFQWPMINPIELRLGLRVKEVAKLRWVLVKLGDMEPHTIAAYRESIYDP 160 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 VE+ +K FQ+RHGL G + + TL ++N R+ QLQ L L + YV Sbjct: 161 SVEAGLKRFQIRHGLSVDGKLGNQTLLSINTKPSFRVVQLQKAL--KLSLKKFDEEQEYV 218 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 VN+ +L +NG L+ VIVG+ +TP L++ ++ + NP W P SII +D+M Sbjct: 219 FVNLTDYTLRISKNGVEQLKMPVIVGKPSSKTPELNTVVSVVTINPTWTPPASIIYQDIM 278 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP----EPPNFIFRQDPGKINAMASTK 312 + + P YL++NN + K ++ + Q G NA+ + Sbjct: 279 KSVDEHPNYLRNNNFVLKSYKTGIEDSNLAGMDTAILKHKLKTSTLVQRSGDKNALGKFR 338 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 + + ++HDTP LF R + GC+R+ +L+ P +++ ++ + Sbjct: 339 FTIPNTSAIFLHDTPNKYLFKRANRALSHGCIRLSEPERFAHYLISKEPLQTQHLFQKAL 398 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 KT KT +L + +P++ +Y + W KD +Q R+ Sbjct: 399 KTNKTMHFRLRSRLPINIIYQNVWIDKDGRLQIRE 433 >gi|149911416|ref|ZP_01900034.1| peptidoglycan binding domain protein [Moritella sp. PE36] gi|149805524|gb|EDM65529.1| peptidoglycan binding domain protein [Moritella sp. PE36] Length = 512 Score = 326 bits (836), Expect = 5e-87, Method: Composition-based stats. Identities = 112/401 (27%), Positives = 181/401 (45%), Gaps = 19/401 (4%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 L+L I + + + ++ + R + IDS +P + + + Sbjct: 104 ATDKALTLELYHIASQSYGNQLKSAANNPDDFRTALINDTLPAYIDSAMPQFNA--VIRL 161 Query: 79 EKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISGDL---DPSKGLSVAF 134 +AI Y+ I WP+L LG V+ LR++LI DL SK F Sbjct: 162 RQAINKYKGI-KNIAWPKLTDSFNPQLGQGHAEVKILRKKLITFNDLRTVSTSKHRLHIF 220 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D + + +K FQ R+GL P+G ++++T A+N +D RI +LQ+NL R L + + Sbjct: 221 DQSIINGLKHFQRRNGLKPTGRLNATTKNALNQNIDSRINKLQINLWRWLS-LPRIPPTK 279 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y++VNIPA L ++ G+ + VIVG+ QTPI+ + +N + NP W R+II D Sbjct: 280 YIMVNIPAFDLRLIDKGEALMEMKVIVGKPSNQTPIMITEVNSVTLNPTWTPTRNIINND 339 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE-PPNFIFRQDPGKINAMASTKI 313 ++ L ++ L N ++ G EV N E + Q PG NA+ + + Sbjct: 340 LLPLHNKNHTALNSLNFYLAKGYGANTLYREVPPNLQEMLKQYRLVQRPGSNNALGNVRF 399 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + N ++HDTP LF R + GC+R+ DL L I + Sbjct: 400 NIKNNNAIFLHDTPTKYLFKRQNRAFSHGCIRLEKSDDLLTIL----------RINQRKN 449 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 T ++L +PV Y +AW I +R+D+Y D Sbjct: 450 NSGTKHLRLQQSLPVFITYQTAWIDNLGEINWRNDLYNKDK 490 >gi|167624211|ref|YP_001674505.1| peptidoglycan-binding domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167354233|gb|ABZ76846.1| Peptidoglycan-binding domain 1 protein [Shewanella halifaxensis HAW-EB4] Length = 444 Score = 326 bits (835), Expect = 6e-87, Method: Composition-based stats. Identities = 103/386 (26%), Positives = 176/386 (45%), Gaps = 14/386 (3%) Query: 34 SVLDEIIN--ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 ++E++N + F + ++ + ++ ++ I K I Y+ + R Sbjct: 55 ESVNELMNMVNLARLLDRQVFWGSSEHQSLSVEQYLNLVERKDIQSLRKLIKHYRSL-ER 113 Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMR 148 WP + L LG + V +LR L GD+ P FD VE+ +KLFQ R Sbjct: 114 YQWPTVAPMELRLGLRTKEVAKLRWILTQVGDITPYSIPAYRESIFDPSVEAGLKLFQRR 173 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL-MRIKKLLEQKMGLRYVLVNIPAASLEA 207 HG G + S TL ++N +R+ QLQ L R+K+ YVLVN+ +L Sbjct: 174 HGHAVDGKLGSQTLLSLNTEPSIRVAQLQNALKQRLKRF---DEAKDYVLVNLMDHTLRI 230 Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLK 267 +NG L VIVG+ +TP L++ I+ I NP W P SII +D++ + + P YL+ Sbjct: 231 TKNGVEQLVMPVIVGKPTSKTPELNTTISVITVNPSWTPPASIIYQDILQSVDKQPNYLR 290 Query: 268 DNNIHMIDEKGKEVFVE----EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYM 323 +N+ + K + + + + Q PG NA+ + + + ++ Sbjct: 291 NNDFAFKSNETKHIDHNVAGMDPKSLKNKLKKSVLVQLPGTKNALGKYRFTIPNSDAIFL 350 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLA 383 HDTP LF R + GC+R+ +L+ P +R + VK+++T +L Sbjct: 351 HDTPSKHLFKRQNRALSHGCIRLSQPALFAQYLINKEPAETRLKFKNAVKSKQTRHFRLT 410 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDI 409 +++ + +Y + W KD +Q R I Sbjct: 411 SQLSIDVIYQTVWIDKDGSLQVRGTI 436 >gi|256425547|ref|YP_003126200.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] gi|256040455|gb|ACU63999.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] Length = 553 Score = 325 bits (834), Expect = 8e-87, Method: Composition-based stats. Identities = 100/350 (28%), Positives = 165/350 (47%), Gaps = 8/350 (2%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 + A ++ S W LP L +++ Q L RL+ SG LD S G S Sbjct: 210 YQLLKSAWVNFKGKYSEMKWDSLP---LTYTDTAGYRQLLINRLVQSGHLDTSGGHSSD- 265 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 + ++ ++ FQ + G T++ MN Q+ +N+ R +K L + R Sbjct: 266 TSLLKKGIRAFQKEFNMYEDGQAGKKTIQTMNKTFADWEVQVALNMDRWRK-LPDTLPQR 324 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 Y++VN+P +E V++G V + S VIVG +TP+L+SR+ + PYW +P SI K+ Sbjct: 325 YIMVNVPGYRMELVDSGTVAVTSKVIVGAPRTRTPLLNSRMTNFVMYPYWRVPFSITIKE 384 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTK 312 M+ +++D YL N+ +ID G + + V W+ F + RQ G N++ K Sbjct: 385 MLPAIQRDRAYLAKKNLEIIDSHGNAISPDSVKWSKLSKNYFPYVLRQMDGIENSLGIMK 444 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 F ++ Y+HDT LF N R + GCVRV+ L ++L KD R + + Sbjct: 445 FNFMNKYAVYLHDTNARGLFANSYRALSHGCVRVQQWDSLSMYLTKDDTRHPRDSMRRWL 504 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 + + VP++F Y +A +D + +DIYG D + + Sbjct: 505 ANGDKKQIDIQHSVPIYFRYFTA-EGRDGRLVLHEDIYGEDRILRKQMKR 553 >gi|94498521|ref|ZP_01305077.1| peptidoglycan binding domain protein [Sphingomonas sp. SKA58] gi|94422064|gb|EAT07109.1| peptidoglycan binding domain protein [Sphingomonas sp. SKA58] Length = 484 Score = 325 bits (834), Expect = 8e-87, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 169/379 (44%), Gaps = 46/379 (12%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL 102 ++ +D D + R+ P ET + +A Y+ I +GGW L Sbjct: 129 LAKAVSDDDLDRWANRLTP------PWAGYET---LRQGLARYEAIRDQGGWQSLSAS-- 177 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 S +R+R+ + SV+ D + ++ Q R+GL+P+G +D+ TL Sbjct: 178 ------SSSDAIRKRIAME-------DPSVSPDEKLADIIQRAQRRYGLNPTGNLDARTL 224 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 A+NV VD RI + N+ R + + + + + V VNI AA L E + + G Sbjct: 225 AALNVGVDDRIAAIMANMERWR-WMPRSLPVNRVQVNIAAAVLTLFEGDQPVTSMRAVTG 283 Query: 223 RVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI-DEKGKEV 281 D QTP+L S I+ I+ NP W +P SI ++++ R L ++ +G E Sbjct: 284 SPDNQTPMLSSSIHSIVVNPPWNVPMSIARRELFPKGRAT---LIRQGYKIVKTPEGGE- 339 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 Q G +A+ K +F + Y+HDTP F++ R + Sbjct: 340 ---------------RIVQPAGPNSALGRLKFDFNNPFAVYLHDTPARGKFSSYDRLASH 384 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GC+R+ + L ++ +P + I+ ++ KT V L +V V+ +Y +A++ D Sbjct: 385 GCIRLEKPVALAEQMVAASPDLN-GQIQNLIDEGKTQRVSLPQDVAVYLLYWTAFANGDG 443 Query: 402 IIQFRDDIYGLDNVHVGII 420 ++ FR+D YG D + I Sbjct: 444 VVSFRNDPYGWDKLLAQKI 462 >gi|307294368|ref|ZP_07574212.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobium chlorophenolicum L-1] gi|306880519|gb|EFN11736.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobium chlorophenolicum L-1] Length = 485 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 154/346 (44%), Gaps = 35/346 (10%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 K +A Y+ I GGWP L S+ V R R+ I SV Sbjct: 154 YDGLRKGLANYERIRDAGGWPTLTA------QSAPDVV--RARVAIE-------DKSVTP 198 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 + ++ Q R+GL+P+G++D+ TL +NVPVD RI + N+ R + + +++ + Sbjct: 199 GEKLVDVLQRAQRRYGLNPTGLLDTRTLRELNVPVDDRIAAIMANMERWR-WMPRQLPVN 257 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 V VNI AA L E + + G D TP+L S I+ I+ NP W +P SI +++ Sbjct: 258 RVQVNIAAAVLTVFEGDEPVTSMRAVTGAPDNATPMLVSSIHSIVVNPPWNVPASIAKRE 317 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + R L ++ +PE Q G +A+ K + Sbjct: 318 LWPKGR---AALIRQGYKIV--------------GTPETGE-RIVQPAGPNSALGRLKFD 359 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 F + Y+HDTP F++ R + GC+R+ + L ++ P I+ ++ T Sbjct: 360 FNNPFAVYLHDTPSRAKFSSYDRLASHGCIRLEKPVPLAELMMAGNPDL-AGKIQSLIDT 418 Query: 375 RKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 KT V L EV V+ +Y +A++ + + FR D YG D + I Sbjct: 419 GKTQRVSLPREVAVYLLYWTAFASNNGTMSFRSDPYGWDKLLAAKI 464 >gi|163752572|ref|ZP_02159755.1| hypothetical protein KT99_11874 [Shewanella benthica KT99] gi|161327545|gb|EDP98746.1| hypothetical protein KT99_11874 [Shewanella benthica KT99] Length = 371 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 93/286 (32%), Positives = 154/286 (53%), Gaps = 4/286 (1%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 + T I + + + W EL L G++ V + RL GDL +S Sbjct: 87 KDYLATSNNIRYLLWLDQKMDWNELVSNSWLKQGDNHSLVPEISRRLNGLGDLGEYDSVS 146 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 FDA V++AV+ FQ RHGL G++ T+ +N+ R L +N + + L + Sbjct: 147 TLFDANVKNAVRHFQQRHGLKIDGIIGPETIRWINITPVKRAELLAINFINKTRYLA-SI 205 Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSII 251 ++++NIPA LE ++NG+V L+S VIVG+ RQTP+L SRI+ ++ NP W +PRS++ Sbjct: 206 EPIFLIINIPAFELELIDNGQVALQSRVIVGKPYRQTPLLISRISNLVINPSWRVPRSLL 265 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR--QDPGKINAMA 309 +D++ +R+D Y++ N ++ D +G+ V +W F +R Q PG+ N + Sbjct: 266 IRDLLPKVREDGGYIQAGNFNVFDNQGQMVSKTAQEWQDLAHGRFPYRLVQQPGEGNTLG 325 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 K F ++ + Y+HDT + LF+ R +SGC+R+ N+ L W Sbjct: 326 RYKFYFENKYSVYLHDTADKELFDESNRALSSGCIRIENVEGLANW 371 >gi|332188328|ref|ZP_08390054.1| putative peptidoglycan binding domain protein [Sphingomonas sp. S17] gi|332011641|gb|EGI53720.1| putative peptidoglycan binding domain protein [Sphingomonas sp. S17] Length = 428 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 99/392 (25%), Positives = 163/392 (41%), Gaps = 43/392 (10%) Query: 38 EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL 97 ++ ++ + D +L + G E + +A Y + P Sbjct: 62 DLRAGLARAMQEGKLDEWLESLAPG---------DENYRRLSQA---YVALRKSSNAPPT 109 Query: 98 PI----RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 PI +P+ G S + + +L+ LD + + + +AVK Q +G+DP Sbjct: 110 PIPDAGKPIEPGKSDPRIPAIAAQLVAFDYLDKAAA-GAVYTPPMVAAVKRMQADYGIDP 168 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 GM+ + LE +N+ R R + VN+ R++ LE+ + VN+ AA L +GK+ Sbjct: 169 DGMIGTDALEILNLSDADRARAIAVNMERLR-WLERNPPATRIDVNLAAARLAYWRDGKL 227 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 V+VG + TP L S I R++ NP W +PRSI +K++ + YL+ NN+ Sbjct: 228 VDTRKVVVGEPETATPQLGSPILRLVANPTWTVPRSIQRKEL---AGKGAGYLRRNNMVW 284 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 D Q PG NA+ K + + + Y+HDTP LF+ Sbjct: 285 KDGW--------------------IVQQPGPKNALGLVKFDMQNEQSIYLHDTPAKALFS 324 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 V R + GCVRV + + L +D + +H T K + V L VPV +Y Sbjct: 325 EVQRQRSHGCVRVEDALGFAEMLARDQGVDAEWH--RARATGKESYVALPQPVPVRMLYQ 382 Query: 394 SAWSPKDSIIQFRDDIYGLDNVHVGIIPLPED 425 + R D YG ++ + P Sbjct: 383 TVLFDDSGEPVVRSDPYGWNDRVASALGFPAS 414 >gi|322434022|ref|YP_004216234.1| ErfK/YbiS/YcfS/YnhG family protein [Acidobacterium sp. MP5ACTX9] gi|321161749|gb|ADW67454.1| ErfK/YbiS/YcfS/YnhG family protein [Acidobacterium sp. MP5ACTX9] Length = 625 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 89/311 (28%), Positives = 154/311 (49%), Gaps = 15/311 (4%) Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 S + A + AVK +Q RH L +G + ++T+ ++NVP+ R +QL +L R++ L + Sbjct: 311 STVYTADLADAVKHYQSRHSLTANGQLTAATVTSLNVPLTARSQQLADSLERLRWLPDPY 370 Query: 191 MGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWVIP 247 + + VN+P L E+ + + V+VG+V + QTP+ + ++F P+W +P Sbjct: 371 LHAP-LQVNLPEFVLRGFGEDHQQQFKMNVVVGQVVGEHQTPVFTHMMKYVIFRPFWNVP 429 Query: 248 RSIIQKDMMALLRQDP-QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 SII+K++ + + YL+ +N +D KG V S E + R+ PG N Sbjct: 430 VSIIKKELAGHIAKSGVGYLEAHNFETVDAKGAHVNASA---ESIERGGVVVREKPGPKN 486 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT-WSR 365 ++ K F + + Y+H TP LF R + GCVRV + L VW+L++TP W Sbjct: 487 SLGLIKFMFPNEYDIYLHSTPAQQLFARSRRDFSHGCVRVEHPDQLAVWVLQNTPRNWDL 546 Query: 366 YHIEEVVKTR-KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN----VHVGII 420 + + ++ V L ++P+ Y +A ++ + F DDIY D V + Sbjct: 547 QKVTDAMQNGADNHQVNLTKQIPIVIFYATARVDENGQVDFFDDIYHYDKQLEDVLAKGM 606 Query: 421 PLP-EDHPIDS 430 P P + +D Sbjct: 607 PYPSQQQHVDP 617 >gi|121591699|ref|ZP_01678927.1| putative peptidoglycan binding domain protein [Vibrio cholerae 2740-80] gi|153819645|ref|ZP_01972312.1| putative peptidoglycan binding domain protein [Vibrio cholerae NCTC 8457] gi|121546440|gb|EAX56672.1| putative peptidoglycan binding domain protein [Vibrio cholerae 2740-80] gi|126509804|gb|EAZ72398.1| putative peptidoglycan binding domain protein [Vibrio cholerae NCTC 8457] Length = 459 Score = 319 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 76/262 (29%), Positives = 139/262 (53%), Gaps = 9/262 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVA--FDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ + L +RL + +LD + L+ +DA +E +K FQ HGL G++ Sbjct: 201 RPGDPLSHREALVQRLALV-NLDTTSILNDVAYYDASLEKPIKQFQKMHGLQTDGVIGPQ 259 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T++ +N V R+ L +N RI+ Q+ ++VN+P ++ + G+ S V+ Sbjct: 260 TMKWLNTSVTERLALLALNAERIRLWPTQQ--DSMIVVNVPGFDMKYWDAGREVFESKVV 317 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-- 278 VG+ R TP+++++++ ++ NP W +P I+ +D++ ++++D +YL ++++ +I Sbjct: 318 VGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDP 377 Query: 279 KEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + + +DW + EP F + RQ G NA+ + K + Y+HDTP LFNN Sbjct: 378 EVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNAS 437 Query: 337 RFETSGCVRVRNIIDLDVWLLK 358 R +SGC+RV N LL Sbjct: 438 RAFSSGCIRVENAEKFAQTLLA 459 >gi|315633943|ref|ZP_07889232.1| conserved hypothetical protein [Aggregatibacter segnis ATCC 33393] gi|315477193|gb|EFU67936.1| conserved hypothetical protein [Aggregatibacter segnis ATCC 33393] Length = 487 Score = 319 bits (817), Expect = 7e-85, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 131/245 (53%), Gaps = 7/245 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + +L +N R++ L + G + VNIP+ L +G+V L S VIVG+ R+TP++ Sbjct: 231 LHRLAINAQRLRILPVFQDG---IFVNIPSYELNYYRDGQVILSSRVIVGQSSRKTPVMS 287 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 SR++ ++ NP W P +I +D++ +R+DP Y+ + +ID G + +DW + Sbjct: 288 SRLSNVVVNPPWNAPTRLINEDIIPKVRKDPSYIYRHGYTIIDGSGNTIDPYTIDWENMS 347 Query: 293 PPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 F + RQ P +A+ + K S Y+HDTP+ LF N R +SGCVRV Sbjct: 348 AKRFPYRLRQAPSDNSALGNYKFNMPSSEAIYLHDTPKRNLFGNKNRALSSGCVRVEKSD 407 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 L LLK+ W+ + V+K++KTT + ++ PV Y++AW KD + DIY Sbjct: 408 QLATILLKEA-GWTDETKQNVLKSKKTTSAGIKSDNPVFLYYVTAWVDKD-QVHTLPDIY 465 Query: 411 GLDNV 415 G D Sbjct: 466 GYDKT 470 >gi|166012265|ref|ZP_02233163.1| YcbB [Yersinia pestis biovar Antiqua str. E1979001] gi|165988829|gb|EDR41130.1| YcbB [Yersinia pestis biovar Antiqua str. E1979001] Length = 252 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 82/239 (34%), Positives = 123/239 (51%), Gaps = 8/239 (3%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 R++ L ++VNIP SL ++G L S VIVGR R+TP++ S +N ++ N Sbjct: 1 RLRILPGHV--DNGIMVNIPNYSLNYYKDGAEVLSSRVIVGRPSRKTPLMSSALNNVVVN 58 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIF 298 P W +P S++++D++ R D Y + N ++ + + +DW+ P NF + Sbjct: 59 PPWNVPTSLVRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMIDWSIISPNNFPY 118 Query: 299 --RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 RQ PG N++ K S + Y+HDTP LF +R +SGCVRV DL L Sbjct: 119 RLRQAPGANNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVRVNKASDLANML 178 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 L+D W+ + VK TT V + VPV Y++AW +D QFR DIY D + Sbjct: 179 LQDA-GWNDARVSSKVKQGDTTYVNIRQRVPVQLYYLTAWVAEDGKPQFRTDIYNYDKM 236 >gi|332288328|ref|YP_004419180.1| L,D-transpeptidase catalytic domain protein [Gallibacterium anatis UMN179] gi|330431224|gb|AEC16283.1| L,D-transpeptidase catalytic domain protein [Gallibacterium anatis UMN179] Length = 469 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 93/300 (31%), Positives = 152/300 (50%), Gaps = 16/300 (5%) Query: 124 LDPSKGLSVAFDA----YVESAVKLF-QMRHGLDPSGMVDSSTLEAMNVPVDLR--IRQL 176 L + ++ DA + + V F Q+ H + + L + + +L Sbjct: 160 LPSDEVINAWLDAVSQQQLAAFVAKFDQVNHRYAQTK---KAILSELTKSTADSNVLAKL 216 Query: 177 QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 +NL R++ + + + G + VNIP L NG+ L S VIVG+ R+TP++ S+++ Sbjct: 217 AINLQRLRFIPDFETG---IFVNIPTFQLHYYRNGEEILSSRVIVGKKARKTPVMMSKLS 273 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF 296 I+ NP W P +I +D++ +R+DP Y+ N +ID KG + +DW + F Sbjct: 274 NIVVNPPWNAPVRLINEDLIPKVRKDPSYIYRNGYTIIDSKGNTIDPYTIDWENMTAKRF 333 Query: 297 IF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 + RQ PG +A+ + K S++ Y+HDTP LFNN R +SGC+RV +L Sbjct: 334 PYRLRQAPGGDSALGNFKFNMPSKDAIYLHDTPNHRLFNNKNRAISSGCIRVNKSDELAT 393 Query: 355 WLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 LL + WS +V+K+RKTT V + + PV+ Y++AW+ + DIYG D Sbjct: 394 LLLTEA-GWSVDKKAQVLKSRKTTSVPIQSTNPVYLYYVTAWADAQGKVHTVADIYGYDQ 452 >gi|52424877|ref|YP_088014.1| hypothetical protein MS0822 [Mannheimia succiniciproducens MBEL55E] gi|52306929|gb|AAU37429.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 486 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 86/309 (27%), Positives = 151/309 (48%), Gaps = 19/309 (6%) Query: 120 ISGDLDPSKGLSVAFDAYVESAVKL---FQMRHGLDPSGMVDSSTLEAMNVPV------- 169 I+G G + SAVK F + L + + T++ + Sbjct: 171 INGYKPAKPGETDV--EEWLSAVKNGQNFAYVNSLTTNNSIYQQTIDKIGSSDFDDDKSV 228 Query: 170 -DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + +L +N R++ + G + VNIP+ L + ++ L S VIVG+ +R+T Sbjct: 229 NSAILYKLALNAQRLRVIPNFSNG---IFVNIPSYQLNYYRDNQLILNSRVIVGKKERRT 285 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P+++S+++ ++ NP W P +I +D++ ++++P YL + ++D KG +V ++W Sbjct: 286 PVMYSKLSNVVVNPPWNAPTRLINEDIVPKIKKNPGYLSAHGYSILDSKGNKVNPNSINW 345 Query: 289 NSP-EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 + + RQD G +A+ K S + Y+HDTP LFN R +SGCVRV Sbjct: 346 AAIGSKFPYRIRQDAGDNSALGRFKFNMPSSDAIYLHDTPNHNLFNKQDRALSSGCVRVE 405 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 L LLK+ WS + V+ ++KTT + ++ PV+ Y++AW ++ + Sbjct: 406 KSNQLASILLKEA-GWSEDKKQRVLNSKKTTSAPIYSDNPVYLYYVTAWV-ENGQVNTLP 463 Query: 408 DIYGLDNVH 416 DIYG D V Sbjct: 464 DIYGYDIVQ 472 >gi|254363167|ref|ZP_04979216.1| hypothetical protein MHA_2750 [Mannheimia haemolytica PHL213] gi|110735335|gb|ABG89238.1| periplasmic protein precursor [Mannheimia haemolytica] gi|153095061|gb|EDN75612.1| hypothetical protein MHA_2750 [Mannheimia haemolytica PHL213] Length = 510 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 130/243 (53%), Gaps = 8/243 (3%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G + L+S VIVGR DR+TP+++S+ Sbjct: 257 KLALNAQRLRIIPSFNNG---IFVNIPSYQLYYFRDGNLALQSKVIVGREDRRTPVMYSK 313 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP--- 291 ++ ++ NP W +P SI+ KD++ L +DP Y + ++D G ++ V+W+ Sbjct: 314 LSNVVVNPPWNVPTSIMTKDIIPKLARDPGYADRASFEILDSSGNKINPRSVNWSQYLNA 373 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + + RQ G +A+ K S + Y+HDTP LF R +SGCVRV + Sbjct: 374 KSSPYRIRQKAGDDSALGRYKFNMPSSDAIYLHDTPNRGLFGKTGRALSSGCVRVEKSDE 433 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W +V+ ++KTT ++ ++ PV+ Y++AW + +Q DIY Sbjct: 434 LATILLKEA-GWGSDKKNQVLGSKKTTSAQIRSDNPVYLYYVTAWV-EGGKVQTLPDIYN 491 Query: 412 LDN 414 D Sbjct: 492 FDA 494 >gi|261493954|ref|ZP_05990462.1| hypothetical protein COK_2352 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310386|gb|EEY11581.1| hypothetical protein COK_2352 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 518 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 8/243 (3%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G + L+S VIVGR DR+TP++ S+ Sbjct: 265 KLALNAQRLRIIPSFNNG---IFVNIPSYQLYYFRDGNLALQSKVIVGREDRRTPVMDSK 321 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP--- 291 ++ ++ NP W +P SI+ KD++ L +DP Y + ++D G ++ V+W+ Sbjct: 322 LSNVVVNPPWNVPTSIMTKDIIPKLARDPGYADRASFEILDSSGNKINPRSVNWSQYLNA 381 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + + RQ G +A+ K S + Y+HDTP LF R +SGCVRV + Sbjct: 382 KSSPYRIRQKAGDDSALGRYKFNMPSSDAIYLHDTPNRGLFGKTGRALSSGCVRVEKSDE 441 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W +V+ ++KTT ++ ++ PV+ Y++AW + +Q DIY Sbjct: 442 LATILLKEA-GWGSDKKNQVLGSKKTTSAQIRSDNPVYLYYVTAWV-EGGKVQTLPDIYN 499 Query: 412 LDN 414 D Sbjct: 500 FDA 502 >gi|261868418|ref|YP_003256340.1| periplasmic protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413750|gb|ACX83121.1| periplasmic protein [Aggregatibacter actinomycetemcomitans D11S-1] Length = 502 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 85/245 (34%), Positives = 133/245 (54%), Gaps = 7/245 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + +L +N R++ L E G + VNIP+ L +GK+ L S VIVG R+TP++ Sbjct: 246 LHRLAINAQRLRILPEFDNG---IFVNIPSYQLNYYRDGKLVLNSRVIVGTDKRKTPVMF 302 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 SR++ ++ NP W P +I +D++ +R+DP Y+ N +ID KG + +DW + Sbjct: 303 SRLSNVVVNPPWNAPTRLINEDIIPKVRRDPSYIYRNGYTIIDGKGNTIDPYTIDWENMT 362 Query: 293 PPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 F + RQ P +A+ + K S + Y+HDTP+ LF N R +SGCVRV Sbjct: 363 AKKFPYRLRQVPSDNSALGNYKFNMPSSDAIYLHDTPKRSLFGNKRRDLSSGCVRVEKSE 422 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 +L LLK+ W+ + V+K+RKTT V + + PV Y++AW K+ + D+Y Sbjct: 423 ELATVLLKEA-GWTAERKQSVLKSRKTTSVTVKSNNPVFLYYVTAWVDKE-QVHTLPDVY 480 Query: 411 GLDNV 415 G D Sbjct: 481 GYDKA 485 >gi|261494761|ref|ZP_05991240.1| hypothetical protein COI_0554 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309578|gb|EEY10802.1| hypothetical protein COI_0554 [Mannheimia haemolytica serotype A2 str. OVINE] Length = 510 Score = 316 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 8/243 (3%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G + L+S VIVGR DR+TP++ S+ Sbjct: 257 KLALNAQRLRIIPSFNNG---IFVNIPSYQLYYFRDGNLALQSKVIVGREDRRTPVMDSK 313 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP--- 291 ++ ++ NP W +P SI+ KD++ L +DP Y + ++D G ++ V+W+ Sbjct: 314 LSNVVVNPPWNVPTSIMTKDIIPKLARDPGYADRASFEILDSSGNKINPRSVNWSQYLNA 373 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + + RQ G +A+ K S + Y+HDTP LF R +SGCVRV + Sbjct: 374 KSSPYRIRQKAGDDSALGRYKFNMPSSDAIYLHDTPNRGLFGKTGRALSSGCVRVEKSDE 433 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W +V+ ++KTT ++ ++ PV+ Y++AW + +Q DIY Sbjct: 434 LATILLKEA-GWGSDKKNQVLGSKKTTSAQIRSDNPVYLYYVTAWV-EGGKVQTLPDIYN 491 Query: 412 LDN 414 D Sbjct: 492 FDA 494 >gi|251792219|ref|YP_003006940.1| periplasmic protein [Aggregatibacter aphrophilus NJ8700] gi|247533607|gb|ACS96853.1| periplasmic protein [Aggregatibacter aphrophilus NJ8700] Length = 506 Score = 316 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 132/245 (53%), Gaps = 7/245 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + +L +N R++ L + G + VNIP+ L +G+ L S VIVG+ +R+TP++ Sbjct: 251 LYRLAINAQRLRILPTFQNG---IFVNIPSYQLTYYRDGEAVLNSRVIVGKTERKTPVMF 307 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 SR++ ++ NP W P +I +D++ +R+DP Y+ N +ID G + +DW + Sbjct: 308 SRLSNVVVNPSWNAPTRLINEDIIPKVRKDPSYIYRNGYTIIDGNGNTIDPYTIDWENMT 367 Query: 293 PPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 F + RQ P +A+ + K S + Y+HDTP+ LF N R +SGCVRV Sbjct: 368 AKKFPYRLRQAPSDNSALGNYKFNMPSSDAIYLHDTPKRSLFGNKKRDLSSGCVRVEKSD 427 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 L LLK+ WS + V+K+RKTT + ++ PV Y++AW KD + DIY Sbjct: 428 QLATILLKEA-GWSDERKQNVLKSRKTTSASIKSDNPVFLYYVTAWVDKD-QVHTLPDIY 485 Query: 411 GLDNV 415 G D Sbjct: 486 GYDKA 490 >gi|260914201|ref|ZP_05920674.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] gi|260631834|gb|EEX50012.1| conserved hypothetical protein [Pasteurella dagmatis ATCC 43325] Length = 511 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 86/267 (32%), Positives = 138/267 (51%), Gaps = 16/267 (5%) Query: 159 SSTLEAM--------NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 TL A+ + ++ ++ +N R++ + E G + VNIP+ LE + Sbjct: 235 KQTLNALTALVKEDADKTALSKMYKMAINAQRLRVIPEFTDG---LFVNIPSYQLEYYRD 291 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 G++ L S VIVG+ R+TP+++S+++ ++ NP W P +I +D++ +R+DP Y+ N Sbjct: 292 GQLVLTSRVIVGKKARKTPVMYSKLSNVVVNPPWNAPVRLINEDIIPKVRKDPSYIYRNG 351 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 +ID KG V +DW + F + RQ PG +A+ + K S + Y+HDTP Sbjct: 352 YTIIDGKGNSVDPYTIDWENMTAKKFPYRLRQAPGD-SALGNFKFNMPSSDAIYLHDTPN 410 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGCVRV L LLK+ WS V+++RKTT +A++ PV Sbjct: 411 RGLFGKKDRALSSGCVRVEKSDQLATILLKEA-GWSEERKRSVLQSRKTTSANVASDNPV 469 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDNV 415 Y++ W K DIYG D+ Sbjct: 470 FLYYVTMWVNK-GQTHTLPDIYGYDST 495 >gi|170749212|ref|YP_001755472.1| peptidoglycan binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170655734|gb|ACB24789.1| peptidoglycan-binding domain 1 protein [Methylobacterium radiotolerans JCM 2831] Length = 674 Score = 314 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 91/334 (27%), Positives = 142/334 (42%), Gaps = 39/334 (11%) Query: 96 ELPIRP-LHLGNSSVSVQRLRERLIIS----GDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 LP P L +G V LR + LD G +D+ V AV FQ G Sbjct: 268 RLPAGPVLRVGMRDARVPLLRAHFNLENRPAATLDKGPGEPEEYDSGVADAVAKFQRGRG 327 Query: 151 LDPSGMVDSSTLEAMN------VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAAS 204 L +G ++ T+ A+ P L VN+ R + L +G Y+LVN+P Sbjct: 328 LPGNGTLNVQTVLALADAGRTARPTGGEAE-LIVNMERWR-WLPGDLGSDYILVNVPEYR 385 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L A G + + VIVG+ + +TP+ + + NP W +P SI+ K M L Sbjct: 386 LRAYRGGVMRDEARVIVGKPESRTPLFSGMMEYAVVNPSWYVPPSIL-KTMAPKLA---G 441 Query: 265 YLKD--NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY 322 Y ++ G + RQ PG+ NA+ K F +++ Y Sbjct: 442 YGGKTWGGYEVVRRGG----------------HISLRQPPGERNALGFIKFMFPNQHAVY 485 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL 382 +HDTP LF+ R + GCVRV + L +L P WS +++++ + T ++L Sbjct: 486 LHDTPNRSLFSASKRDFSHGCVRVDDPFRLADVVL---PNWSEDRLKKLIGKGERT-IRL 541 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 ++PVH Y +A+ + D+YG D Sbjct: 542 PEKLPVHLAYFTAFVDDGGTYRTLPDLYGYDAPM 575 >gi|288957909|ref|YP_003448250.1| peptidoglycan-binding domain 1 protein [Azospirillum sp. B510] gi|288910217|dbj|BAI71706.1| peptidoglycan-binding domain 1 protein [Azospirillum sp. B510] Length = 434 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 94/319 (29%), Positives = 156/319 (48%), Gaps = 6/319 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + LG+S V RL +RL+ G L P+ ++ F A ++ AVK FQ+ + P G+V + T Sbjct: 84 MKLGSSGERVGRLAQRLVELGLL-PADKVAELFTADIDHAVKAFQLAQRMKPDGLVGAGT 142 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 A++ ++ + + ++ ++VN+ + V G+ L IV Sbjct: 143 RAALDRTPAEAAALMRQSAVAMRSF-RDTAPDNVLVVNLTDQTTTLVRGGEEELTMRAIV 201 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV 281 GR R+TP+L RI I+ NP W +P +++++D + +LR N I +D G+EV Sbjct: 202 GRPSRETPLLTDRITHIIVNPTWTVPPTVLKEDKLPMLRAKGTPGIQNAIVYLD--GQEV 259 Query: 282 FVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETS 341 E VDW+ P Q PG NA+ + + + Y+H T EP LF +R +S Sbjct: 260 APETVDWHDVTPGRVRIVQQPGNHNALGRFRFNLTNPYDIYLHGTNEPRLFARELRSISS 319 Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVR+ + L LL+ + + I+ ++ ++ VKL T +PV FVY A D Sbjct: 320 GCVRLEDPRRLAELLLQGSSV-TPERIDRMLDKQQPQWVKLPTPMPVQFVYWIATVEADG 378 Query: 402 IIQFRDDIYGL-DNVHVGI 419 ++ DIY D+ + Sbjct: 379 AVRLHPDIYDRADDAPTAM 397 >gi|197105669|ref|YP_002131046.1| peptidoglycan-binding domain 1 [Phenylobacterium zucineum HLK1] gi|196479089|gb|ACG78617.1| peptidoglycan-binding domain 1 [Phenylobacterium zucineum HLK1] Length = 605 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 161/370 (43%), Gaps = 30/370 (8%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL---PIRPLHLGNSSVS 110 + ++ + + PI + ++A+ Y+ G PE+ R L G Sbjct: 240 SLQEHLEAALAARNPI-----VENLDRALERYR--AQWSGLPEIFIPAGRELAPGVRDPR 292 Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 V LR RL + A+D +E AV+ FQ HGL +G D +TLEA+N Sbjct: 293 VDLLRLRLGL-------PDTGGAYDEVLEGAVRAFQRAHGLPDTGRADRTTLEALNAGAA 345 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 R ++ NL R L G R++LV+ A L ++G+ V+ G+ + TP+ Sbjct: 346 HYERLVEANLERASA-LPASFGERFILVDAAAGQLWYYDHGQQLAAMKVVTGKPSQPTPM 404 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP-QYLKDNNIHMIDEKGKE---VFVEEV 286 + ++ ++FNPYW +P ++Q + + + Y+++ + ++ + + + V Sbjct: 405 MVGMVSHLIFNPYWNVPEDLVQTSIAPKVLEHGLGYIEEEGLEVLSDYTADAVVLDPAAV 464 Query: 287 DWNSPEPPNF--IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 DW + RQ PG N M K+ + Y+HDTP F R +SGCV Sbjct: 465 DWRAVAAGALSVRVRQKPGPKNMMGKVKLMLPNPLGIYLHDTPHRGDFARSQRLASSGCV 524 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQ 404 R+ + + L L + + + + LA PV+ Y++A D I Sbjct: 525 RLEDAMSLARLLAGGDKAEAALAV-----GGEERRIDLAEPAPVYITYLTAAPTSDGFI- 578 Query: 405 FRDDIYGLDN 414 FR D+YGLD Sbjct: 579 FRPDVYGLDA 588 >gi|293392039|ref|ZP_06636373.1| periplasmic protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952573|gb|EFE02692.1| periplasmic protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 502 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 85/245 (34%), Positives = 133/245 (54%), Gaps = 7/245 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + +L +N R++ L E G + VNIP+ L +GK+ L S VIVG R+TP++ Sbjct: 246 LYRLAINAQRLRILPEFANG---IFVNIPSYQLNYYRDGKLVLNSRVIVGTDKRKTPVMF 302 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 SR++ ++ NP W P +I +D++ +R+DP Y+ N +ID KG + +DW + Sbjct: 303 SRLSNVVVNPPWNAPTRLINEDIIPKVRRDPSYIYRNGYTIIDGKGNTIDPYTIDWENMT 362 Query: 293 PPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 F + RQ P +A+ + K S + Y+HDTP+ LF N R +SGCVRV Sbjct: 363 AKKFPYRLRQVPSDNSALGNYKFNMPSSDAIYLHDTPKRSLFGNKRRDLSSGCVRVEKSE 422 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 +L LLK+ W+ + V+K+RKTT V + + PV Y++AW K+ + D+Y Sbjct: 423 ELATVLLKEA-GWTAERKQSVLKSRKTTSVTVKSNNPVFLYYVTAWVDKE-QVHTLPDVY 480 Query: 411 GLDNV 415 G D Sbjct: 481 GYDKA 485 >gi|116750212|ref|YP_846899.1| peptidoglycan binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116699276|gb|ABK18464.1| Peptidoglycan-binding domain 1 protein [Syntrophobacter fumaroxidans MPOB] Length = 587 Score = 312 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 98/380 (25%), Positives = 153/380 (40%), Gaps = 35/380 (9%) Query: 49 NDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNS 107 D+ R+ M A+A Y+D+ + ++ + G S Sbjct: 218 EDQVKALSGRIPMSDYLKRLEPRSPHYRPLLNALARYRDLAANTTQQQVRAPSTMRPGES 277 Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +V+ L++RL ++ FDA + AVK FQ H ++P G V T E +N+ Sbjct: 278 GNAVRDLQKRLRQEDFYRGE--ITGTFDAATQQAVKRFQAAHQIEPDGAVGQRTREWLNM 335 Query: 168 PVDLRIRQLQ--VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV- 224 P + + +NL+R + + RYV +NIP +LE ++G+ VIVG+ Sbjct: 336 PFKQKAEMIAHGINLLRQS---QTRRSDRYVRINIPQFALEYYKDGQSLSSHRVIVGKAS 392 Query: 225 ------------DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIH 272 + QTP L S I +++ NP W + I + ++ A DPQY + Sbjct: 393 GKKVKVLGKWMRENQTPTLTSNIEQVIINPRWYVSDRI-RLELDAQAGSDPQYFARHGY- 450 Query: 273 MIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 W P Q PG N + K EF + Y+HDT + LF Sbjct: 451 -------VQMASLYPWGQP-----RLFQKPGPKNPLGQIKFEFPNPYAVYLHDTNQKSLF 498 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 R + GC+RV L LLKD E + + + +KLAT VP+ Y Sbjct: 499 QRTRRDFSHGCIRVEKAKHLAHLLLKDDQNPLADKTEPYLSSDRQLFIKLATPVPIIIEY 558 Query: 393 ISAWSPKDSIIQFRDDIYGL 412 + +D + F D YG Sbjct: 559 LPVSCNEDGQVIFFGDPYGW 578 >gi|332885569|gb|EGK05815.1| hypothetical protein HMPREF9456_02079 [Dysgonomonas mossii DSM 22836] Length = 592 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 93/378 (24%), Positives = 177/378 (46%), Gaps = 33/378 (8%) Query: 85 YQDILSR--GGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA-------F 134 YQ++ + G+ + LG+ + + + +RL ++G+ ++ S+ Sbjct: 214 YQELKEKKEQGFKTITSTATYKLGDKNKHISEIAQRLALTGEYVIAESDSIRDDSSEMML 273 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 D + A+ +F+ ++ + T++A+N P+D + +LQ N+ R + + + + Sbjct: 274 DENLLEAINIFRKKNSYPEEKEIGKLTIDALNRPLDYYLEKLQANMERYRWKMTKAKHNK 333 Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++ VN+ +A L A E + L V VG +TP+L S I+ + NP W IP SI QK+ Sbjct: 334 HIEVNVASAYLTATEQDSLPLIMKVCVGTATNKTPLLQSDISYLNLNPIWNIPTSIAQKE 393 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTK 312 + L ++DP Y+K +N+ + GKEV + ++W +P F + RQ PG+ NA+ K Sbjct: 394 VAVLQKKDPTYIKRHNMKLY-RNGKEVDITTINWKEVDPSKFSYTIRQSPGESNALGLVK 452 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW--------- 363 F + + Y+HDTP F R + GCVRV+ DL + + T Sbjct: 453 FMFSNAFSVYLHDTPSKAAFGRKNRAVSHGCVRVQKPFDLAFFCMSTTSDDIYKDRLFYS 512 Query: 364 -SRYHIEEVVK--TRKTTPVKL------ATEVPVHFVYISAWS-PKDSIIQFRDDIYGLD 413 + I + K ++ KL ++ + Y + + P D ++ + DD+Y D Sbjct: 513 IDKQPISKAGKKLAQENKLKKLPDILNPKEKISLFIDYYTVYMYPDDDMLYYADDVYEYD 572 Query: 414 NVHVGIIPLPEDHPIDSD 431 + + + P+ + + Sbjct: 573 SAILNAL-KPQHSKVKKE 589 >gi|325578156|ref|ZP_08148291.1| hypothetical protein HMPREF9417_1032 [Haemophilus parainfluenzae ATCC 33392] gi|325159892|gb|EGC72021.1| hypothetical protein HMPREF9417_1032 [Haemophilus parainfluenzae ATCC 33392] Length = 497 Score = 310 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 92/321 (28%), Positives = 160/321 (49%), Gaps = 21/321 (6%) Query: 108 SVSVQRLRER-LIISGDLDPSKGLSVAFDAYVESAVKL-----FQMRHGLDPSGMVDSST 161 S +V + +R L + P D + +SAVK F +GL + T Sbjct: 172 SKNVNQQAQRWLYATNAYKPELPNQEIIDEW-QSAVKNNNVSGF--VNGLSNHNRLYRET 228 Query: 162 LEAM-----NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR 216 ++++ + ++L +N R++ + + + G + VNIP+ L+ +GK L Sbjct: 229 VQSLPSMISASGISEMGKKLALNAQRLRVIPDFENG---IFVNIPSYQLKYYRDGKAILE 285 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 S VIVG+ +R+TP+++SR++ ++ NP W P +I +D++ L++DP Y +N ++D Sbjct: 286 SRVIVGKNERRTPVMYSRLSNVVVNPPWNAPTRLINEDILPKLKRDPGYAAAHNYSILDS 345 Query: 277 KGKEVFVEEVDWNSP-EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 KG + ++W+S + + RQ G +A+ + K S + Y+HDTP LF+ Sbjct: 346 KGNTIDPYSINWSSIGDRFPYRIRQAAGD-SALGNYKFNMPSSDAIYLHDTPNHNLFSKK 404 Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 R +SGCVRV L LL++ WS V+ ++KTT + T PV Y++A Sbjct: 405 DRALSSGCVRVEKSDQLASILLQEA-GWSEDRKRNVLASKKTTSANIRTNDPVFLYYVTA 463 Query: 396 WSPKDSIIQFRDDIYGLDNVH 416 W ++ Q DIY D+ Sbjct: 464 WV-ENGQTQVLPDIYKYDDAA 483 >gi|15602135|ref|NP_245207.1| hypothetical protein PM0270 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720500|gb|AAK02354.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 515 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 130/245 (53%), Gaps = 8/245 (3%) Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 ++ ++ +N R++ + G + VNIP+ L +GK+ L S VIVG+ R+TP+ Sbjct: 259 AQLYKIAINAQRLRVIPTFDNG---LFVNIPSYQLHYYRDGKLILTSKVIVGKKARKTPV 315 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 L+S+++ ++ NP W P +I +D++ +R+DP Y+ N +ID KGK + +DW + Sbjct: 316 LYSKLSDVVVNPPWNTPTRLINEDIIPRVRKDPSYIYRNGYTIIDSKGKTIDPYTIDWEN 375 Query: 291 PEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 F + RQ PG +A+ + K S + Y+HDTP LF +SGCVRV Sbjct: 376 MTAKKFPYRLRQAPGD-SALGNFKFNMPSSDAIYLHDTPSRGLFAKKDLALSSGCVRVEK 434 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 +L LLK+ WS VK+RKT V +A+ PV Y++AW + D Sbjct: 435 ADELASVLLKEA-GWSEERKVNTVKSRKTISVNVASNNPVFLYYVTAWVN-NGKTHTLPD 492 Query: 409 IYGLD 413 IYG D Sbjct: 493 IYGYD 497 >gi|307244929|ref|ZP_07527026.1| hypothetical protein appser1_1410 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253883|ref|ZP_07535735.1| hypothetical protein appser9_1410 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258337|ref|ZP_07540078.1| hypothetical protein appser11_1400 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854094|gb|EFM86302.1| hypothetical protein appser1_1410 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863087|gb|EFM95029.1| hypothetical protein appser9_1410 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867521|gb|EFM99368.1| hypothetical protein appser11_1400 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 521 Score = 309 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 8/243 (3%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G++ L+S VIVGR DR+TP+++S+ Sbjct: 268 KLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRDDRRTPVMYSK 324 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 ++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ V+W Sbjct: 325 LSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPRSVNWAQYVNS 384 Query: 295 N---FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ K S + Y+HDTP LF R +SGCVRV D Sbjct: 385 KNLPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSSGCVRVERSDD 444 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW ++ + DIY Sbjct: 445 LASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTAWV-ENGKVYTLPDIYK 502 Query: 412 LDN 414 D Sbjct: 503 FDT 505 >gi|303251945|ref|ZP_07338116.1| hypothetical protein APP2_0272 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247104|ref|ZP_07529156.1| hypothetical protein appser2_1030 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307256146|ref|ZP_07537933.1| hypothetical protein appser10_1510 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307262708|ref|ZP_07544336.1| hypothetical protein appser13_1350 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|302649375|gb|EFL79560.1| hypothetical protein APP2_0272 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856353|gb|EFM88504.1| hypothetical protein appser2_1030 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306865327|gb|EFM97223.1| hypothetical protein appser10_1510 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306871963|gb|EFN03679.1| hypothetical protein appser13_1350 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 521 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 8/243 (3%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G++ L+S VIVGR DR+TP+++S+ Sbjct: 268 KLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRDDRRTPVMYSK 324 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 ++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ V+W Sbjct: 325 LSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPRSVNWAQYVNS 384 Query: 295 N---FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ K S + Y+HDTP LF R +SGCVRV D Sbjct: 385 KNLPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSSGCVRVERSDD 444 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW ++ + DIY Sbjct: 445 LASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTAWV-ENGKVYTLPDIYK 502 Query: 412 LDN 414 D Sbjct: 503 FDT 505 >gi|152978757|ref|YP_001344386.1| hypothetical protein Asuc_1085 [Actinobacillus succinogenes 130Z] gi|150840480|gb|ABR74451.1| conserved hypothetical protein [Actinobacillus succinogenes 130Z] Length = 494 Score = 309 bits (792), Expect = 6e-82, Method: Composition-based stats. Identities = 87/276 (31%), Positives = 145/276 (52%), Gaps = 15/276 (5%) Query: 149 HGLDPSGMVDSSTLEA----MN----VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 +GL + + T+ +N VPV+ +L +N R++ + + G + VNI Sbjct: 210 NGLHANNSLYQQTVNLIAGNLNSVNKVPVNDN-YKLAINAQRLRIIPDFYNG---IFVNI 265 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR 260 P+ L NG++ L S VIVG+ +R+TP+++S+++ ++ NP W P +I +D++ ++ Sbjct: 266 PSYQLNYYRNGRLTLNSRVIVGKNNRRTPVMYSKLSNVVVNPPWNAPTRLINEDIIPKVK 325 Query: 261 QDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP-EPPNFIFRQDPGKINAMASTKIEFYSRN 319 +DP YL + +ID KG V ++W S + RQ G +A+ K S + Sbjct: 326 RDPNYLVRHGYSIIDGKGNTVNPYNINWGSIGNKFPYRLRQAAGDNSALGRYKFNMPSSD 385 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 Y+HDTP LFNN R +SGCVRV L LL + WS + V+ ++KTT Sbjct: 386 AIYLHDTPNHALFNNKNRALSSGCVRVDKSDQLASILLSEA-GWSSDKKQRVLNSKKTTS 444 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + ++ PV+ Y++ W ++ +Q DIYG D V Sbjct: 445 APILSDNPVYLYYVTTWV-ENGKVQSVPDIYGYDRV 479 >gi|303249825|ref|ZP_07336029.1| hypothetical protein APP6_1233 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251648|ref|ZP_07533553.1| hypothetical protein appser6_1700 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651392|gb|EFL81544.1| hypothetical protein APP6_1233 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860845|gb|EFM92853.1| hypothetical protein appser6_1700 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 521 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 8/243 (3%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G++ L+S VIVGR DR+TP+++S+ Sbjct: 268 KLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRDDRRTPVMYSK 324 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 ++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ V+W Sbjct: 325 LSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPRSVNWAQYVNS 384 Query: 295 N---FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ K S + Y+HDTP LF R +SGCVRV D Sbjct: 385 KNLPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSSGCVRVERSDD 444 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW ++ + DIY Sbjct: 445 LASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTAWV-ENGKVYTLPDIYK 502 Query: 412 LDN 414 D Sbjct: 503 FDT 505 >gi|301156058|emb|CBW15529.1| predicted carboxypeptidase [Haemophilus parainfluenzae T3T1] Length = 489 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 88/320 (27%), Positives = 154/320 (48%), Gaps = 19/320 (5%) Query: 108 SVSVQRLRER-LIISGDLDPSKGLSVAFDAYVES----AVKLFQMRHGLDPSGMVDSSTL 162 S +V + +R L + P D + + AV F +GL + T+ Sbjct: 164 SKNVNQQAQRWLYATNAYKPELPNQEIIDQWQSAVKNNAVSDF--VNGLSNHNRLYRETV 221 Query: 163 EAMN--VPVD---LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 +++ + ++L +N R++ + + + G + VNIP+ L+ +GKV L S Sbjct: 222 QSLPSMISPSGISAIGKKLALNAQRLRIIPDFENG---IFVNIPSYQLKYYRDGKVLLES 278 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 VIVG+ +R+TP+++SR++ ++ NP W P +I +D++ L++DP Y +N ++D Sbjct: 279 RVIVGKNERRTPVMYSRLSNVVVNPPWNAPTRLINEDILPKLKRDPSYATAHNYSILDSN 338 Query: 278 GKEVFVEEVDWNSP-EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 G + ++W+S + RQ G +A+ + K S + Y+HDTP LF+ Sbjct: 339 GNTINPHSINWSSIGNKFPYRIRQAAGD-SALGNYKFNMPSSDAIYLHDTPNHSLFSKKD 397 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGCVRV L LLK+ WS + ++KT + T PV Y++AW Sbjct: 398 RALSSGCVRVEKSDQLASILLKEA-GWSEDKKRNALASKKTVSANIRTNDPVFLYYVTAW 456 Query: 397 SPKDSIIQFRDDIYGLDNVH 416 ++ DIY D+ Sbjct: 457 V-ENGQTHVLPDIYKYDDAA 475 >gi|307260578|ref|ZP_07542270.1| hypothetical protein appser12_1530 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869655|gb|EFN01440.1| hypothetical protein appser12_1530 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 521 Score = 308 bits (790), Expect = 9e-82, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 8/243 (3%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G++ L+S VIVGR DR+TP+++S+ Sbjct: 268 KLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRDDRRTPVMYSK 324 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 ++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ V+W Sbjct: 325 LSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPRSVNWAQYVNS 384 Query: 295 N---FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ K S + Y+HDTP LF R +SGCVRV D Sbjct: 385 KNLPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSSGCVRVERSDD 444 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW ++ + DIY Sbjct: 445 LASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTAWV-ENGKVYTLPDIYK 502 Query: 412 LDN 414 D Sbjct: 503 FDT 505 >gi|32034588|ref|ZP_00134744.1| COG2989: Uncharacterized protein conserved in bacteria [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207609|ref|YP_001052834.1| hypothetical protein APL_0121 [Actinobacillus pleuropneumoniae L20] gi|126096401|gb|ABN73229.1| hypothetical protein APL_0121 [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 521 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 129/243 (53%), Gaps = 8/243 (3%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G++ L+S VIVGR DR+TP+++S+ Sbjct: 268 KLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRDDRRTPVMYSK 324 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 ++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ V+W Sbjct: 325 LSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPRSVNWAQYVNS 384 Query: 295 N---FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ K S + Y+HDTP LF R +SGCVRV D Sbjct: 385 KNLPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSSGCVRVERSDD 444 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW ++ + DIY Sbjct: 445 LASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTAWV-ENGKVYTLPDIYK 502 Query: 412 LDN 414 D Sbjct: 503 FDT 505 >gi|307249325|ref|ZP_07531319.1| hypothetical protein appser4_1390 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858619|gb|EFM90681.1| hypothetical protein appser4_1390 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 521 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 130/243 (53%), Gaps = 8/243 (3%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N+ R++ + G + VNIP+ L +G++ L+S VIVGR DR+TP+++S+ Sbjct: 268 KLALNVQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRDDRRTPVMYSK 324 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 ++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ V+W Sbjct: 325 LSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPRSVNWAQYVNS 384 Query: 295 N---FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ K S + Y+HDTP LF R +SGCVRV D Sbjct: 385 KNLPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSSGCVRVERSDD 444 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW ++ + DIY Sbjct: 445 LASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTAWV-ENGKVYTLPDIYK 502 Query: 412 LDN 414 D Sbjct: 503 FDT 505 >gi|239995151|ref|ZP_04715675.1| peptidoglycan binding domain-containing protein [Alteromonas macleodii ATCC 27126] Length = 481 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 91/266 (34%), Positives = 136/266 (51%), Gaps = 11/266 (4%) Query: 96 ELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 ++P+ P L L ++S V L+ RL+ G S FD + AVK FQM G++P Sbjct: 207 QIPVGPTLKLNSTSERVVLLKSRLLGPGTY------SELFDKDLLDAVKQFQMSAGIEPD 260 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G+V SSTLEA+N + ++ NL R + L + Y+ VNI + L G+ Sbjct: 261 GIVGSSTLEALNATTFSWLERIDANLERWR-WLPHQTWSTYLRVNIASFQLRGFTEGEET 319 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 L VIVG RQTP+ + ++FNPYW +P SI KD +A L+ +P L + Sbjct: 320 LGMPVIVGTPVRQTPVFAESMKYMVFNPYWTVPFSIATKDKLAKLKTNPSLLVEQGYEAQ 379 Query: 275 DEK-GKEVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 V++ DW + F + RQ PG NA+ K +++ Y+HDTP+ L Sbjct: 380 PAGVSGFSPVDKFDWTNVSRGTFHYTLRQKPGPHNALGKVKFMLPNKHAIYLHDTPDHSL 439 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLL 357 F+ + R +SGC+RV N + L W+L Sbjct: 440 FSKLERNFSSGCIRVSNPLKLSQWVL 465 >gi|240948089|ref|ZP_04752499.1| hypothetical protein AM305_04803 [Actinobacillus minor NM305] gi|240297569|gb|EER48061.1| hypothetical protein AM305_04803 [Actinobacillus minor NM305] Length = 539 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 132/243 (54%), Gaps = 8/243 (3%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G++ L+S VIVGR DR+TP+++S+ Sbjct: 286 KLALNAQRLRIIPSFNNG---IFVNIPSYQLYYFRDGQLALQSKVIVGREDRRTPVMYSK 342 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 ++ ++ NP W +P SI+ KD++ L ++P + ++D G +V V+W+ Sbjct: 343 LSNVVVNPPWNVPTSILTKDIVPKLARNPGIADSLSYEILDGSGNKVNPRSVNWSQYLNA 402 Query: 295 N---FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ K S + Y+HDTP LF+ R +SGCVRV + Sbjct: 403 KSIPYRIRQKAGDDSALGRYKFNMPSSDAIYLHDTPNHGLFSRTDRALSSGCVRVNKSSE 462 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LL++ WS + V+ ++KTT V + ++ PV+ Y+++W + + DIY Sbjct: 463 LASILLREA-GWSAEKQQSVLASKKTTSVNIRSDNPVYLYYVTSWV-EGGKVYTLPDIYK 520 Query: 412 LDN 414 LD+ Sbjct: 521 LDS 523 >gi|42522877|ref|NP_968257.1| putative peptidoglycan-binding protein [Bdellovibrio bacteriovorus HD100] gi|39574073|emb|CAE79250.1| putative peptidoglycan-binding protein [Bdellovibrio bacteriovorus HD100] Length = 526 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 97/383 (25%), Positives = 168/383 (43%), Gaps = 24/383 (6%) Query: 56 LARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP--IRPLHLGNSSVSVQR 113 + + +D P S + A+ +L G W + +PL LG + + Sbjct: 145 QSDAKLALDKMAPQFS--VYQSLKMALERLYPLLETGLWENITPAKKPLSLGKKDPVIIK 202 Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV--DSSTLEAMNVPVDL 171 L+ERL G ++ FD + A+ Q+ + P G++ T +V + Sbjct: 203 LKERLRQLGY--RIDSMNDTFDQDMLIAINDIQLNLKMKPDGVISPGGRTWRFFSVSLLD 260 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN-GKVGLRSTVIVGRVDRQTPI 230 R+ QLQ ++ +++ Q + R++ VN + + + + I G +R+TP Sbjct: 261 RLSQLQADMEQLR-WFPQNLEDRHIFVNTAFSHFMMTDKKNNISMSFKAINGTAERKTPT 319 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQ-----DPQYLKDNNIHMIDEK-GKEVFVE 284 L RI ++ NP W IP ++ D + +L++ +Y DN + + + Sbjct: 320 LRDRITYLVMNPTWTIPPTVFLNDKVEILKKLDTKGIRKYFTDNRFEVYTADFSRTIDPT 379 Query: 285 EVDWNSPEPP--NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 +DW S + NF RQ P NA+ K + Y+HDT + LF R +SG Sbjct: 380 SIDWKSIKSSSVNFYIRQKPSYNNALGVVKFMMTNPYAIYLHDTNQRDLFGEAQRLRSSG 439 Query: 343 CVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR-----KTTPVKLATEVPVHFVYISAWS 397 CVR+ +DL +LL T WSR IE V K T V L +PV+ V +++ Sbjct: 440 CVRLEKPLDLAEYLLAGTQ-WSRPQIENFVVKEGQLVDKETRVDLKEPMPVYLVPVTSQM 498 Query: 398 PKDSIIQFRDDIYGLDNVHVGII 420 D +I+F +D+YG + + + + Sbjct: 499 NSDGVIRFVEDVYGHNQLILSQV 521 >gi|322515092|ref|ZP_08068099.1| hypothetical protein HMPREF0027_1851 [Actinobacillus ureae ATCC 25976] gi|322118898|gb|EFX91080.1| hypothetical protein HMPREF0027_1851 [Actinobacillus ureae ATCC 25976] Length = 530 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 8/243 (3%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G++ L+S VIVGR DR+TP+++S+ Sbjct: 277 KLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRDDRRTPVMYSK 333 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 ++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ V+W+ Sbjct: 334 LSNVVVNPPWNIPPTILTKDIIPKLARNPGFAGSAGYEIFDRKGNKINPRSVNWSQYVNS 393 Query: 295 N---FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ K S + Y+HDTP LF R +SGCVRV D Sbjct: 394 KNIPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSSGCVRVERSDD 453 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW+ ++ + DIY Sbjct: 454 LASILLKEA-GWSMDRKQKVLASQKTTSANIRSDNPVYLYYVTAWA-ENGKVYTLPDIYK 511 Query: 412 LDN 414 D Sbjct: 512 FDT 514 >gi|332826880|gb|EGJ99680.1| hypothetical protein HMPREF9455_03943 [Dysgonomonas gadei ATCC BAA-286] Length = 593 Score = 305 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 95/386 (24%), Positives = 175/386 (45%), Gaps = 32/386 (8%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSK 128 S++ + + + I G + E+ LG+ S ++ + RL+++G+ P Sbjct: 203 SEDIYLRLREEYKLLRTIQETG-FKEITSGDVTYKLGDKSKHIKDIAGRLMLTGEYKPDS 261 Query: 129 GLSVAF----DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 S + D + +A+ F+ R+ V T+ A+N P + + +++ N+ R + Sbjct: 262 ISSDSLHIKLDEELLAAINTFRRRNSYPEEAEVGKLTISALNRPFEYYLAKIRANMERYR 321 Query: 185 KLLEQKMGLRYVLVNIPAASLEA--VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +++ VN+ AA L A +N + L S V VG V +TP+L S I+ + NP Sbjct: 322 WKRAKAKHYKHIEVNVAAAMLVANNTKNDSLPLISRVCVGSVRNKTPLLQSDISYMNLNP 381 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF--RQ 300 W +P SI QK++ L ++DP Y+K +N+ + + GKEV V +DW P F + +Q Sbjct: 382 IWNVPASIAQKEVAVLQKKDPTYIKRHNMKLY-KGGKEVDVSSIDWEDVNPSKFSYTIKQ 440 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 DPG N++ K F + + Y+HDTP + FN R + GCVRV+ DL + Sbjct: 441 DPGGGNSLGLVKFMFNNAFSVYLHDTPSKLAFNRKNRAVSHGCVRVQKPFDLAFFCASPI 500 Query: 361 PTWSRYHIEEVVKTRKTTP-----------------VKLAT--EVPVHFVYISAWS-PKD 400 + + + + + + ++ + Y +A+ P D Sbjct: 501 TEVYKDQLYHSINKPPVSDEGKKLLKEQKLKKLPDIINIDKDNKISLFIDYYTAFMYPDD 560 Query: 401 SIIQFRDDIYGLDNVHVGIIPLPEDH 426 + + DDIY D + + + + Sbjct: 561 EALYYADDIYEYDKLILDALNPNQTA 586 >gi|257465088|ref|ZP_05629459.1| hypothetical protein AM202_01165 [Actinobacillus minor 202] gi|257450748|gb|EEV24791.1| hypothetical protein AM202_01165 [Actinobacillus minor 202] Length = 537 Score = 305 bits (782), Expect = 9e-81, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 131/243 (53%), Gaps = 8/243 (3%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G++ L+S VIVGR DR+TP+++S+ Sbjct: 284 KLALNAQRLRIIPSFNNG---IFVNIPSYQLYYFRDGQLALQSKVIVGREDRRTPVMYSK 340 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 ++ ++ NP W +P SI+ KD++ L ++P + ++D G +V V+W+ Sbjct: 341 LSNVVVNPPWNVPTSILTKDIVPKLARNPGIADSLSYEILDGSGNKVNPRSVNWSQYLNA 400 Query: 295 N---FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ K S + Y+HDTP LF+ R +SGCVRV + Sbjct: 401 KSIPYRIRQKAGDDSALGRYKFNMPSSDAIYLHDTPNHGLFSRTDRALSSGCVRVAKSSE 460 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ WS + V+ ++KTT + ++ PV+ Y+++W + + DIY Sbjct: 461 LASILLKEA-GWSAEKQQSVLASKKTTSANIRSDNPVYLYYVTSWV-EGGKVYTLPDIYK 518 Query: 412 LDN 414 LDN Sbjct: 519 LDN 521 >gi|219872270|ref|YP_002476645.1| hypothetical protein HAPS_2267 [Haemophilus parasuis SH0165] gi|219692474|gb|ACL33697.1| conserved hypothetical protein [Haemophilus parasuis SH0165] Length = 516 Score = 305 bits (782), Expect = 9e-81, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 130/243 (53%), Gaps = 8/243 (3%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 QL +N R++ + G + VNIP+ L GK+ L+S VIVGR DR+TP+++S+ Sbjct: 263 QLALNAQRLRLIPSFNNG---IFVNIPSYQLYYFREGKLVLQSKVIVGRNDRKTPVMYSK 319 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 ++ ++ NP+W +P +I KD++ LR+DP ++D KG + ++W + E Sbjct: 320 LSNVVVNPHWNVPSTIKNKDLVPKLRKDPILADKLGYEILDGKGNKFSAHSINWAAYEGK 379 Query: 295 N---FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 N + RQ G +A+ K S + Y+HDTP LF+ R +SGCVRV + Sbjct: 380 NNFPYHIRQKAGDDSALGRYKFNMPSSDAIYLHDTPNRGLFSKKNRALSSGCVRVAKADE 439 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LL + WS ++V+ ++KTT + ++ PV+ Y+++W + I DIY Sbjct: 440 LATLLLAEA-GWSAQRKQDVLASKKTTSAPIRSDNPVYLYYVTSWI-EGGKIYTLPDIYQ 497 Query: 412 LDN 414 D Sbjct: 498 FDK 500 >gi|167855604|ref|ZP_02478364.1| hypothetical protein HPS_03656 [Haemophilus parasuis 29755] gi|167853295|gb|EDS24549.1| hypothetical protein HPS_03656 [Haemophilus parasuis 29755] Length = 516 Score = 305 bits (782), Expect = 9e-81, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 8/243 (3%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 QL +N R++ + G + VNIP+ L GK+ L+S VIVGR DR+TP+++S+ Sbjct: 263 QLALNAQRLRLIPSFNNG---IFVNIPSYQLYYFREGKLVLQSKVIVGRNDRKTPVMYSK 319 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 ++ ++ NP W +P +I KD++ LR+DP ++D KG + ++W + E Sbjct: 320 LSNVVVNPPWNVPSTIKNKDLVPKLRKDPILADKLGYEILDGKGNKFSAHSINWAAYEGK 379 Query: 295 N---FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 N + RQ G +A+ K S + Y+HDTP LF+ R +SGCVRV + Sbjct: 380 NNFPYHIRQKAGDDSALGRYKFNMPSSDAIYLHDTPNRGLFSKKNRALSSGCVRVAKADE 439 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LL + WS ++V+ ++KTT + ++ PV+ Y+++W + I DIY Sbjct: 440 LATLLLAEA-GWSAQRKQDVLASKKTTSAPIRSDNPVYLYYVTSWI-EGGKIYTLPDIYQ 497 Query: 412 LDN 414 D Sbjct: 498 FDK 500 >gi|294012199|ref|YP_003545659.1| hypothetical protein SJA_C1-22130 [Sphingobium japonicum UT26S] gi|292675529|dbj|BAI97047.1| conserved hypothetical protein [Sphingobium japonicum UT26S] Length = 503 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 90/350 (25%), Positives = 147/350 (42%), Gaps = 33/350 (9%) Query: 75 IAQTEKAIAFYQDILSR-GGWPELPIR---PLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 + +A A D R GG P++P+ L G LR RL + Sbjct: 178 YVKLREARA---DFAQRWGGLPQVPVPADVKLRPGMK-AGAAALRRRLGL--------AS 225 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 A+D + + VK FQ HGL P G+ ++T+ A+N D R + +N+ R + L + Sbjct: 226 GTAYDKALVARVKAFQGDHGLKPDGVAGAATIAALNRGDDHYDRLIALNMERARLLPGPQ 285 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 + R+V+V+ +A L G V+VG + QTP++ + NPYW +P + Sbjct: 286 V--RHVVVDAASARLWYFSKGAQDGTMKVVVGAKESQTPMMAGMVRYATLNPYWNVPSDL 343 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWNSPEPPN--FIFRQDPGKI 305 +++ + + L + + +++ VDW + RQ PG Sbjct: 344 VERKLAPRMLNGAS-LTKLRYEALSDWSANARKLDPAAVDWRAVADGRTELRVRQLPGGD 402 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 NAM K F + Y+HDTP L R ++GCVR+ + L W Sbjct: 403 NAMGKVKFMFPNDLGIYLHDTPSRDLLAKPARQFSNGCVRLEDAQRLGRWFFG------- 455 Query: 366 YHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 + + V L VPV+ Y++A +D ++F D+YG D V Sbjct: 456 -KPLKPASDKPEQHVPLPQPVPVYLTYLTAVPLEDG-VRFLPDVYGRDGV 503 >gi|296531943|ref|ZP_06894738.1| peptidoglycan-binding domain 1 protein [Roseomonas cervicalis ATCC 49957] gi|296267730|gb|EFH13560.1| peptidoglycan-binding domain 1 protein [Roseomonas cervicalis ATCC 49957] Length = 321 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 89/319 (27%), Positives = 150/319 (47%), Gaps = 8/319 (2%) Query: 110 SVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V LR RL + +DA +E+AV+ +Q H L+ G V T MN P Sbjct: 3 RVPALRARLAAEDAELAAAPDGGALYDAPLEAAVRRWQAAHSLEVDGRVGPMTQRLMNRP 62 Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + Q++V + + + G R + VNIP L ++ + V+VG+V R T Sbjct: 63 AGAVVGQIRVAMDQRRGRGAAAPG-RRIEVNIPEFRLRVMDGARQVTAMNVVVGKVARAT 121 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEE 285 P L R+ + FNP W +P ++D++ R+DP+ + + + G E V Sbjct: 122 PPLAVRMTAVQFNPPWGVPERNAREDLLPKFRRDPRAMMEKGFRLFTVVGGERVEVDPMT 181 Query: 286 VDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 VDW S P F + RQD ++A+ K + ++ Y+HDTP+ LF R +SGC Sbjct: 182 VDWASVNPQRFPYIVRQDASDVSALGRLKFVMPNGDDIYLHDTPDRHLFGRADRALSSGC 241 Query: 344 VRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSII 403 +R+ ++L +L+ P W+R + + +R+T+ + L PV Y + + Sbjct: 242 IRLSQPMELLDLVLEGVPGWNRERAQRALDSRQTSFLSLPRAWPVRLHYDTVVV-EQGQA 300 Query: 404 QFRDDIYGLDNVHVGIIPL 422 + DIYGLD ++ ++ Sbjct: 301 RLLSDIYGLDAAYLRLLDQ 319 >gi|330448515|ref|ZP_08312163.1| hypothetical protein PMSV_2819 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492706|dbj|GAA06660.1| hypothetical protein PMSV_2819 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 569 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 81/331 (24%), Positives = 143/331 (43%), Gaps = 13/331 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAF------DAYVESAVKLFQMRHGLDPSGMV 157 LG++ + L G L + V + A+K F+ +GL G++ Sbjct: 217 LGDTIPHGSDVATVLWNLGYLTQPQYQQVIAQKKITNTGVMNQAIKAFETNYGLKADGIM 276 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 + + P R +NL R + + G + ++VNIP ++ +N K S Sbjct: 277 GPEVVAQLTCPYSSLARIAALNLQRERFAQLEGDGPQ-IIVNIPDYTMTLYDNQKPVFES 335 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK 277 +I G R T + + IN ++ NPYW +P +I ++ + + +P +L+ N + +I+ Sbjct: 336 DIIDGMPKRPTNLFQTYINTVVINPYWYVPETIKVQNTIPSAKANPNFLQRNRMDVINSW 395 Query: 278 G--KEVFVEEVDWNSPEPPNFI--FRQDPGKINAMASTKIEFYSRNNTYMHD--TPEPIL 331 V ++W + P F FRQDPG NA+ + YMHD E L Sbjct: 396 SDRSVVPPSSINWATVNPKTFPHEFRQDPGPENALGRVAFLMPDSFSVYMHDEEQSEYPL 455 Query: 332 FNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 F R +SGC+RV+ ++ +L + +++++ + K + L V + Sbjct: 456 FKRRHRDLSSGCMRVQKPREMAKLILSYQNMPNLPSVDDMINSNKHREIGLKKHVDLDVA 515 Query: 392 YISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 Y+++W D + R DIYG DN I Sbjct: 516 YLTSWVTPDGQLAMRPDIYGYDNPRTKPINN 546 >gi|152993088|ref|YP_001358809.1| hypothetical protein SUN_1501 [Sulfurovum sp. NBC37-1] gi|151424949|dbj|BAF72452.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1] Length = 397 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 94/347 (27%), Positives = 151/347 (43%), Gaps = 42/347 (12%) Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG--DLDPS 127 + + + Q+ + I + I ++ PL GN + R++ + G DL Sbjct: 81 YTMQLLPQSRRYIELRRYIDYLYSIRDVYTPPLFRGNEVEDIMRIKAIFRLLGIADLPDD 140 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 ++ +F AVK +Q RHGL+ G + T +M P+ IR+++ NL+ +K ++ Sbjct: 141 PYITDSF----IEAVKEYQRRHGLEVDGKIGPQTRRSMKQPISSIIRKVKKNLV-LKSIV 195 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + YVLVNIP ++ ENG L V+VG+ +TP+ H + I+ NP W +P Sbjct: 196 -HEKPATYVLVNIPEFAMHYYENGWPALNMKVVVGKPKMRTPVFHRNMQYIVENPRWNVP 254 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI K+ YL+ + + GK Q PG+ N+ Sbjct: 255 PSIYAKEYANK---SESYLRKKGL-FYNSDGK------------------LYQRPGRRNS 292 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + K F +R N YMHDTP LF R + GC+R+ L Sbjct: 293 LGLVKFLFPNRFNVYMHDTPSKYLFKRYRRAYSHGCIRLEKPFALLN------------K 340 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 + + KT + L +PV+ Y + W + I+QFR DIYG + Sbjct: 341 LGYTYRPGKTRWITLKHTIPVYVEYHTVWVDDNGIVQFRPDIYGYER 387 >gi|46202872|ref|ZP_00052464.2| COG2989: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 265 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 96/239 (40%), Positives = 152/239 (63%), Gaps = 3/239 (1%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 ++R++ +G R+V+ NIPAA ++ VENG+V VG++DRQ+PI++++ +I Sbjct: 1 MIRLRSY-SGDLGRRFVITNIPAALVQTVENGQVVTLHAAGVGKIDRQSPIMNTKATQIN 59 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 FNP W +P SI++KD++ +++DP YL DN I ++ G+E+ + V+W S E + +R Sbjct: 60 FNPTWTVPASIVKKDLIPKMQKDPNYLTDNKIRILSG-GQEISPKSVNWFSDEGTRYTYR 118 Query: 300 QDPGKI-NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 QD G N+M +I + +MHDT +F + RF +SGCVRV+N+ + WLLK Sbjct: 119 QDSGADFNSMGVVRINIPNPYGVFMHDTNSRGVFGDDFRFISSGCVRVQNVREYITWLLK 178 Query: 359 DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 DTP W R H+E+ V++ + L+ VPV++ YI+AW+ D +QFRDDIY D V+V Sbjct: 179 DTPGWDRAHVEQAVESGQRIDATLSQPVPVYWTYITAWATPDGTVQFRDDIYKRDGVNV 237 >gi|212635459|ref|YP_002311984.1| hypothetical protein swp_2663 [Shewanella piezotolerans WP3] gi|212556943|gb|ACJ29397.1| Conserved hypothetical protein [Shewanella piezotolerans WP3] Length = 457 Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 95/373 (25%), Positives = 161/373 (43%), Gaps = 21/373 (5%) Query: 48 VNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNS 107 N RFD L + S + I I Y+ + S WP+L LG Sbjct: 94 DNKRFDELLTFAE----------SNKQIKALRDKIRQYEQL-SNYQWPQLEASVFSLGQR 142 Query: 108 SVSVQRLRERLIISGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 + + +LR L+ DL D S FD + ++K FQ RHGL SG ++ T+ Sbjct: 143 ATDIAKLRWVLVKLDDLEFKDISAYREAIFDPSITRSLKRFQKRHGLIQSGELNKETITL 202 Query: 165 MNVPVDLRIRQLQVNL-MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 +N + +LQ++L ++ K+ Q Y+ VNIP L + L VIVG Sbjct: 203 LNTEPAFIVSKLQLSLKDKLSKVNYQN--SSYIEVNIPEFKLRIKGDESSTLEFPVIVGS 260 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 + +TP+LH+ +++I NP W PRSI+ +++A L++ P+ L++ ++ + Sbjct: 261 IKNKTPLLHTYVSKITINPTWTPPRSIVYNELLAELKKSPKSLENQKFVLVKKGNTNEVK 320 Query: 284 EEVDWNSPEPPN----FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 ++ + Q PG NA+ + + +MHDTP+ F R Sbjct: 321 SLKGMDASRLKQELKVYQLVQSPGFRNALGKYRFTIPNSELIFMHDTPDKQAFKKRNRAI 380 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPK 399 + GC+R+ L +L+ + K T +KL +P+ + W K Sbjct: 381 SHGCIRLSQPELLAKYLIDRENSIESIRFLSARKGVNTVDIKLRNPIPIIITNHNVWVDK 440 Query: 400 DSIIQFRDDIYGL 412 D+++Q R +Y Sbjct: 441 DNVLQVRPSVYNR 453 >gi|148825793|ref|YP_001290546.1| hypothetical protein CGSHiEE_03720 [Haemophilus influenzae PittEE] gi|148715953|gb|ABQ98163.1| hypothetical protein CGSHiEE_03720 [Haemophilus influenzae PittEE] Length = 489 Score = 299 bits (767), Expect = 5e-79, Method: Composition-based stats. Identities = 80/262 (30%), Positives = 138/262 (52%), Gaps = 12/262 (4%) Query: 159 SSTLEAMNV----PVDLRIRQ-LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 T++A+ + + I Q L +N R++ + + G + VNIP+ L+ +G + Sbjct: 217 RQTVQALPMFIPTSKESNIAQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDL 273 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 L S VIVG+ R+TP+++S+++ ++ NP W P +I +D++ ++ DP Y+ ++N + Sbjct: 274 ILESRVIVGKNSRRTPVMYSKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSI 333 Query: 274 IDEKGKEVFVEEVDWNSP-EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 +D +G V +DW S + RQ G +A+ + K S + Y+HDTP LF Sbjct: 334 LDNQGNVVDPASIDWESIGNKFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLF 392 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 N R +SGCVR+ L LLK+ W+ V+ ++KTT + ++ PV Y Sbjct: 393 NRKNRALSSGCVRIEKSDQLASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYY 451 Query: 393 ISAWSPKDSIIQFRDDIYGLDN 414 ++AW +I+ DIYG D Sbjct: 452 VTAWIENGNIVNL-PDIYGYDR 472 >gi|90578006|ref|ZP_01233817.1| hypothetical amidase [Vibrio angustum S14] gi|90441092|gb|EAS66272.1| hypothetical amidase [Vibrio angustum S14] Length = 569 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 82/326 (25%), Positives = 142/326 (43%), Gaps = 19/326 (5%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPS------KGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+ G+ +V L G L + + A+K F+ +GL Sbjct: 220 PIPYGDKVATV------LWNLGYLTQPQYQQIVAQTKITNSGVLNQAIKAFEENYGLKAD 273 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G++ + + P +R +NL R + + G + ++VNIP + +N + Sbjct: 274 GIIGPDVVSQLTRPYSSLVRLAALNLQRERFAQLEGDGPQ-IIVNIPDYKMTLYDNQEPV 332 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 S +I G R T + S IN ++ NPYW +P +I ++ + + +P +L +N + +I Sbjct: 333 FESKIIDGMPKRPTNLFQSYINTVVINPYWYVPETIKVQNTIPSAKANPNFLANNRMDVI 392 Query: 275 DEKG--KEVFVEEVDWNSPEPPNFI--FRQDPGKINAMASTKIEFYSRNNTYMHD--TPE 328 + V +DW + P F FRQDPG NA+ + YMHD E Sbjct: 393 NSWSDRSVVPPSSIDWATVNPKTFAHEFRQDPGPENALGRVAFLMPDSFSVYMHDESQSE 452 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGC+RV+ + ++L + +++++ T + L T V + Sbjct: 453 YPLFKRRHRDLSSGCMRVQQPRKMATFILSYQNMPNLPSVDDMINTNNHREIGLNTHVNL 512 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDN 414 Y++AW + + R DIYG DN Sbjct: 513 DVAYLTAWVTPNGQLAMRPDIYGYDN 538 >gi|165975577|ref|YP_001651170.1| hypothetical protein APJL_0122 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875678|gb|ABY68726.1| hypothetical protein APJL_0122 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 521 Score = 299 bits (766), Expect = 6e-79, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 128/243 (52%), Gaps = 8/243 (3%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L +N R++ + G + VNIP+ L +G++ L+S VIVGR DR+TP++HS+ Sbjct: 268 KLALNAQRLRIIPSFNNG---IFVNIPSYQLFYFRDGQLALQSKVIVGRDDRRTPVMHSK 324 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 ++ ++ NP W IP +I+ KD++ L ++P + + D KG ++ V+W Sbjct: 325 LSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGNKINPRSVNWAQYVNS 384 Query: 295 N---FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ K S + Y+HDTP LF R +SGCVRV D Sbjct: 385 KNLPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTDRALSSGCVRVERSDD 444 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ WS ++V+ ++KTT + ++ PV+ Y++ W ++ + DIY Sbjct: 445 LASILLKEA-GWSMDKKQKVLASQKTTSANIPSDNPVYVYYVAPWV-ENGKVYTLRDIYE 502 Query: 412 LDN 414 D Sbjct: 503 FDA 505 >gi|296445064|ref|ZP_06887025.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] gi|296257485|gb|EFH04551.1| ErfK/YbiS/YcfS/YnhG family protein [Methylosinus trichosporium OB3b] Length = 518 Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats. Identities = 68/254 (26%), Positives = 114/254 (44%), Gaps = 21/254 (8%) Query: 170 DLRIRQ-LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 D R+R + N+ R + + + +G + VNIP L + +G+V R+ VIVG+ T Sbjct: 283 DTRLRAEIIANMERWR-WMPRDLGENRIEVNIPDFELAVIRDGEVTHRARVIVGKEGTPT 341 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P+ + + I+ NPYW +P SI+ K+M+ D Q + ++ G Sbjct: 342 PVFSNAMQFIIVNPYWNVPPSILNKEMLPKFGGDLQAIAARGYEVVYRNGHA-------- 393 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 RQ PG+ NA+ K F + + Y+HDTP LF + R + GCVRV Sbjct: 394 --------RVRQRPGEGNALGRIKFMFPNDFSVYLHDTPSRALFASTHRAFSHGCVRVDQ 445 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 +L W ++ ++ + + LA +P+H Y +A+ + +Q R D Sbjct: 446 PFRFAEAVLG--SGWREERVKRLIGD-QERYINLARPLPIHIEYFTAYVDESGRLQLRGD 502 Query: 409 IYGLDNVHVGIIPL 422 +YG + L Sbjct: 503 LYGYSAKVRAALGL 516 >gi|146329173|ref|YP_001209233.1| lipoprotein [Dichelobacter nodosus VCS1703A] gi|146232643|gb|ABQ13621.1| conserved hypothetical lipoprotein [Dichelobacter nodosus VCS1703A] Length = 505 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 5/244 (2%) Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRI 235 L +N+ R++ + Q G +YV+ NIPA ++E + + + +VGR DR TP ++I Sbjct: 260 LIINMERLR-WMPQDWGEQYVITNIPAFNVEMYRDERKIYETRAVVGRADRATPRFINKI 318 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 ++ NP W +P +I+++D + L+ +P + + GK V W+ E Sbjct: 319 QHVVINPTWTVPPTIMRQDKLPKLKNNPAAFDAS-YEAVSASGKIAKPSSVSWS--EGNG 375 Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 + RQ G+ NA+ K F +++ YMHDTP LF R +SGC+R++ ++L Sbjct: 376 YSLRQKSGQYNALGRVKFLFPNKHAIYMHDTPTRHLFKQNNRARSSGCIRLQKPLELAEI 435 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 LL D W+ I+ + K V E PV+ VY + + ++ I+ D+YGLD Sbjct: 436 LLADN-GWNAQKIQASIAKEKQQWVNPVKETPVYLVYWTTYVDANNTIKTTPDVYGLDKK 494 Query: 416 HVGI 419 + Sbjct: 495 LIRA 498 >gi|229845074|ref|ZP_04465210.1| hypothetical protein CGSHi6P18H1_00944 [Haemophilus influenzae 6P18H1] gi|229812046|gb|EEP47739.1| hypothetical protein CGSHi6P18H1_00944 [Haemophilus influenzae 6P18H1] Length = 489 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 131/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG+ R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGKNSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ Sbjct: 353 NKFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNHGLFNRKNRALSSGCVRIEKSDQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYG 469 Query: 412 LDN 414 D Sbjct: 470 YDR 472 >gi|145639176|ref|ZP_01794783.1| hypothetical protein CGSHiII_04039 [Haemophilus influenzae PittII] gi|145271738|gb|EDK11648.1| hypothetical protein CGSHiII_04039 [Haemophilus influenzae PittII] Length = 489 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 131/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG+ R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGKNSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ Sbjct: 353 NKFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNHGLFNRKNRALSSGCVRIEKSDQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYG 469 Query: 412 LDN 414 D Sbjct: 470 YDR 472 >gi|323497656|ref|ZP_08102673.1| hypothetical protein VISI1226_22555 [Vibrio sinaloensis DSM 21326] gi|323317405|gb|EGA70399.1| hypothetical protein VISI1226_22555 [Vibrio sinaloensis DSM 21326] Length = 469 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 83/331 (25%), Positives = 149/331 (45%), Gaps = 16/331 (4%) Query: 36 LDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWP 95 L+ + ++ N + + +I +T K Q I P Sbjct: 132 LESAVFALKRAVTNHQMAELIEAYTPDSSEYQQLI--DTYLHIVK--FQKQRIA-----P 182 Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA-FDAYVESAVKLFQMRHGLDPS 154 + G+ V L RL + + A +D + A+K FQ HGL+P Sbjct: 183 VAERGVIRPGDKLVDKAVLLARLEVVDVDLTDVDRTAAFYDKSLVPAIKQFQQLHGLNPD 242 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G++ TL+ +N+ + R+ L +N R++ + ++VN+P+ + +GK Sbjct: 243 GIIGPQTLKWLNLSLSSRLSTLALNAERVRYWPSE--HDSIIVVNVPSYEMTYWHDGKAV 300 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 S V+VGR R TP++ + ++ ++ NP W +P +I+ +D++ +++DP+Y+ +I ++ Sbjct: 301 FESKVVVGRKARPTPLMVTNLDTLILNPTWNVPWTIMVEDIIPKIQKDPEYITKQHIEIL 360 Query: 275 DEKGK--EVFVEEVDWNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 + G + E+DW S P F +R Q G NA+ K + Y+HDTP Sbjct: 361 PKWGSKERIDPLEIDWESLNPKAFPYRMTQMSGSRNALGLYKFNTPNNRAIYLHDTPSKG 420 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 LF+ R +SGC+RV N LL+ Sbjct: 421 LFSQPKRAFSSGCIRVENADVFASRLLEVQG 451 >gi|319896895|ref|YP_004135090.1| hypothetical protein HIBPF05750 [Haemophilus influenzae F3031] gi|317432399|emb|CBY80754.1| conserved hypothetical protein [Haemophilus influenzae F3031] Length = 489 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 130/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV Sbjct: 353 NKFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYG 469 Query: 412 LDN 414 D Sbjct: 470 YDR 472 >gi|301170424|emb|CBW30030.1| conserved hypothetical protein [Haemophilus influenzae 10810] Length = 487 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 130/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 234 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMY 290 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 291 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 350 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV Sbjct: 351 NKFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQ 409 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 410 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYG 467 Query: 412 LDN 414 D Sbjct: 468 YDR 470 >gi|309972939|gb|ADO96140.1| Putative murein L,D-transpeptidase [Haemophilus influenzae R2846] Length = 489 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 130/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV Sbjct: 353 NKFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYG 469 Query: 412 LDN 414 D Sbjct: 470 YDR 472 >gi|68250268|ref|YP_249380.1| hypothetical protein NTHI1968 [Haemophilus influenzae 86-028NP] gi|148827093|ref|YP_001291846.1| hypothetical protein CGSHiGG_02060 [Haemophilus influenzae PittGG] gi|319776086|ref|YP_004138574.1| hypothetical protein HICON_14350 [Haemophilus influenzae F3047] gi|68058467|gb|AAX88720.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP] gi|148718335|gb|ABQ99462.1| alpha-ketoglutarate decarboxylase [Haemophilus influenzae PittGG] gi|309750756|gb|ADO80740.1| Putative murein L,D-transpeptidase [Haemophilus influenzae R2866] gi|317450677|emb|CBY86897.1| conserved hypothetical protein [Haemophilus influenzae F3047] Length = 489 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 130/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV Sbjct: 353 NKFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYG 469 Query: 412 LDN 414 D Sbjct: 470 YDR 472 >gi|329123250|ref|ZP_08251818.1| hypothetical protein HMPREF9095_1036 [Haemophilus aegyptius ATCC 11116] gi|327471459|gb|EGF16907.1| hypothetical protein HMPREF9095_1036 [Haemophilus aegyptius ATCC 11116] Length = 487 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 130/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 234 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMY 290 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 291 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 350 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV Sbjct: 351 NKFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQ 409 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 410 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYG 467 Query: 412 LDN 414 D Sbjct: 468 YDR 470 >gi|16273554|ref|NP_439809.1| hypothetical protein HI1667 [Haemophilus influenzae Rd KW20] gi|260581261|ref|ZP_05849079.1| conserved hypothetical protein [Haemophilus influenzae RdAW] gi|1176067|sp|P44285|Y1667_HAEIN RecName: Full=Putative L,D-transpeptidase HI_1667 gi|1574515|gb|AAC23312.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|260092088|gb|EEW76033.1| conserved hypothetical protein [Haemophilus influenzae RdAW] Length = 489 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 77/242 (31%), Positives = 131/242 (54%), Gaps = 7/242 (2%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++S Sbjct: 237 QKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMYS 293 Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 +++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S + Sbjct: 294 KLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIDN 353 Query: 294 P-NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV L Sbjct: 354 KFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQL 412 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 413 ASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYGY 470 Query: 413 DN 414 D Sbjct: 471 DR 472 >gi|145631483|ref|ZP_01787252.1| hypothetical protein CGSHi22421_02471 [Haemophilus influenzae R3021] gi|144982913|gb|EDJ90426.1| hypothetical protein CGSHi22421_02471 [Haemophilus influenzae R3021] Length = 489 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 130/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ Sbjct: 353 NKFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNHGLFNRKNRALSSGCVRIEKSDQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYG 469 Query: 412 LDN 414 D Sbjct: 470 YDR 472 >gi|89076172|ref|ZP_01162529.1| hypothetical amidase [Photobacterium sp. SKA34] gi|89048122|gb|EAR53707.1| hypothetical amidase [Photobacterium sp. SKA34] Length = 569 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 85/332 (25%), Positives = 145/332 (43%), Gaps = 19/332 (5%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE------SAVKLFQMRHGLDPS 154 P+ G+ +V L G L + + A + A++ F+ +GL Sbjct: 220 PIPYGDKVATV------LWNLGYLTQPQYQQIVAQAKITNSGVINQAIQAFEGNYGLKMD 273 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G++ + + P R +NL R + + G + ++VNIP + +N K Sbjct: 274 GIIGPDVMRQLTRPYSSLARIAALNLQRERFAQLEGDGPQ-IIVNIPDYKMTLYDNQKPI 332 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 S +I G R T + S IN ++ NPYW +P +I ++ + + +P +L +N + +I Sbjct: 333 FESKIIDGIPKRPTNLFQSYINTVVINPYWYVPETIKVQNTIPSAKANPNFLANNRMDVI 392 Query: 275 DEKG--KEVFVEEVDWNSPEPPNFI--FRQDPGKINAMASTKIEFYSRNNTYMHD--TPE 328 + V +DW + P F FRQDPG NA+ + YMHD E Sbjct: 393 NSWSDRSVVPPSSIDWATVNPKTFSHEFRQDPGPENALGRVAFLMPDSFSVYMHDESQSE 452 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 LF R +SGC+RV+ + +L + + +++ T K + L T V + Sbjct: 453 YPLFKRRHRDLSSGCMRVQQPRKMATLILSYQNMPTLPSVNDMINTNKHREIGLNTHVNL 512 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 Y++AW ++ + R DIYG DN +I Sbjct: 513 DVAYLTAWVTQNGQLAMRPDIYGYDNPGAKLI 544 >gi|145633343|ref|ZP_01789074.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 3655] gi|145634471|ref|ZP_01790181.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittAA] gi|144986189|gb|EDJ92779.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae 3655] gi|145268451|gb|EDK08445.1| ribonucleotide-diphosphate reductase subunit beta [Haemophilus influenzae PittAA] Length = 489 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 130/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ Sbjct: 353 NKFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRIEKSEQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIYG Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYG 469 Query: 412 LDN 414 D Sbjct: 470 YDR 472 >gi|229846898|ref|ZP_04467005.1| alpha-ketoglutarate decarboxylase [Haemophilus influenzae 7P49H1] gi|229810387|gb|EEP46106.1| alpha-ketoglutarate decarboxylase [Haemophilus influenzae 7P49H1] Length = 489 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 80/262 (30%), Positives = 137/262 (52%), Gaps = 12/262 (4%) Query: 159 SSTLEAMNV----PVDLRIRQ-LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 T++A+ + + I Q L +N R++ + + G + VNIP+ L+ +G + Sbjct: 217 RQTVQALPMFIPTSKESNIAQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDL 273 Query: 214 GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM 273 L S VIVG R+TP+++S+++ ++ NP W P +I +D++ ++ DP Y+ ++N + Sbjct: 274 ILESRVIVGTDSRRTPVMYSKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSI 333 Query: 274 IDEKGKEVFVEEVDWNSP-EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 +D +G V +DW S + RQ G +A+ + K S + Y+HDTP LF Sbjct: 334 LDNQGNVVDPASIDWESIGNKFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLF 392 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 N R +SGCVR+ L LLK+ W+ V+ ++KTT + ++ PV Y Sbjct: 393 NRKNRALSSGCVRIEKSEQLASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYY 451 Query: 393 ISAWSPKDSIIQFRDDIYGLDN 414 ++AW +I+ DIYG D Sbjct: 452 VTAWIENGNIVNL-PDIYGYDR 472 >gi|255623270|ref|XP_002540350.1| conserved hypothetical protein [Ricinus communis] gi|223496506|gb|EEF22033.1| conserved hypothetical protein [Ricinus communis] Length = 249 Score = 295 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 81/266 (30%), Positives = 128/266 (48%), Gaps = 19/266 (7%) Query: 80 KAIAFYQDILSRGGWPELPIRP-LHLGNS-SVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 K + Y+D+ ++GGW +P P L LG+ + +L RL I D + + FD Sbjct: 1 KGLVVYRDLAAKGGWALIPEGPPLKLGDKGDPRITQLEARLAIE-DPTIAVDKAPVFDEA 59 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 ++ A+ Q R GL+P G++ TL A+NVPV LRI Q+ N+ R + L +++ + Sbjct: 60 LQQALMRAQKRFGLNPDGVLGKGTLAALNVPVQLRIDQIVANMERWR-WLPEELPADRIQ 118 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VNI AA + + L + GR +TP+L S+I+ I+ NP W +P SI K++ Sbjct: 119 VNIAAAVMSVFHHDAPTLTMRAVTGRPGDETPMLQSQIHSIVLNPPWNVPSSIATKELWP 178 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYS 317 R +P YL N+ +I +G +Q G A+ K +F + Sbjct: 179 KERANPGYLARNDFIVIPTEGGGT---------------RLQQKAGDKAALGLVKFDFNN 223 Query: 318 RNNTYMHDTPEPILFNNVVRFETSGC 343 Y+HDTP F + R + GC Sbjct: 224 PYGVYLHDTPSRAKFASYSRLASHGC 249 >gi|260582628|ref|ZP_05850417.1| alpha-ketoglutarate decarboxylase [Haemophilus influenzae NT127] gi|260094300|gb|EEW78199.1| alpha-ketoglutarate decarboxylase [Haemophilus influenzae NT127] Length = 489 Score = 295 bits (756), Expect = 8e-78, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 129/243 (53%), Gaps = 7/243 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV Sbjct: 353 NKFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LLK+ W+ V+ ++KTT + ++ PV Y++AW +I+ DIY Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFLYYVTAWIENGNIVNL-PDIYD 469 Query: 412 LDN 414 D Sbjct: 470 YDR 472 >gi|42522163|ref|NP_967543.1| putative periplamic protein [Bdellovibrio bacteriovorus HD100] gi|39574694|emb|CAE78536.1| putative periplamic protein [Bdellovibrio bacteriovorus HD100] Length = 505 Score = 295 bits (756), Expect = 9e-78, Method: Composition-based stats. Identities = 95/384 (24%), Positives = 171/384 (44%), Gaps = 27/384 (7%) Query: 51 RFDNFLARVDMGIDSDIPIISKE--TIAQTEKAIAFYQDILSRGGWPELPI--RPLHLGN 106 + LA + + +S + ++ + WP LP + L LG+ Sbjct: 115 ELETALAAAGQNPNVLLESMSPQSPQYLALRDSLRKLNNACVNNLWPALPKVKKTLKLGS 174 Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV--DSSTLEA 164 + L+ R+ G P L FD V +AV Q P + T + Sbjct: 175 KDAILIPLKTRMTQLGY--PMTSLDNVFDDKVVAAVNDIQWNLRFKPDSKISPGGKTWKY 232 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE---NGKVGLRSTVIV 221 +NV R+RQ+++++ +++ Q RY+ +N+ + V+ G + I Sbjct: 233 LNVSCQDRMRQIRLDMEKLR-WFPQHFEDRYIFINLAMSYFSLVDKSGGGFYSMSFRTIN 291 Query: 222 GRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQ-----DPQYLKDNNIHMIDE 276 GR +R++P + +I I+ NP+WV+P +I ++D + ++ +Y + + ++ Sbjct: 292 GRPERKSPTMKDKIVYIVINPFWVVPPTIFREDKVEEIKNLWPWEIREYFDTRHYQVWNK 351 Query: 277 K-GKEVFVEEVDWNSPEPP---NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 + +DW + +P N RQ P ++NA+ S K + Y+HDT + LF Sbjct: 352 SFTQRFDPASIDWYNMDPNQDANIYIRQSPHRMNALGSLKFMMTNSYAIYLHDTNQRELF 411 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR-----KTTPVKLATEVP 387 R +SGCVRV +DL +LLK T W R IE + K T V+L ++P Sbjct: 412 AEPHRLLSSGCVRVEKPVDLAEYLLKGT-EWDRAAIERYMAKPGEVLDKDTKVQLKQQMP 470 Query: 388 VHFVYISAWSPKDSIIQFRDDIYG 411 V+ V++++ D I++F +D Y Sbjct: 471 VYMVFLTSQLSSDGILRFAEDSYR 494 >gi|325104437|ref|YP_004274091.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter saltans DSM 12145] gi|324973285|gb|ADY52269.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter saltans DSM 12145] Length = 493 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 84/290 (28%), Positives = 138/290 (47%), Gaps = 12/290 (4%) Query: 151 LDPSGMVDSSTLEAMNVPVD-LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 L P V ++ M + + ++ +NL R++ + +++LVNIP L + Sbjct: 205 LQPKNAVYTALQAEMQKGLSGDQKERIFLNLERLRWKIS-DFPEKFILVNIPEFKLRLYD 263 Query: 210 NGKVGLRSTVIVGRV----------DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALL 259 N K L V VG + +TP+L I+R+ NP W IP+SI K++M L Sbjct: 264 NHKEALAMKVCVGATANPPYSKNGQNHETPVLSGTIDRMQINPVWNIPKSIAGKEIMTKL 323 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRN 319 ++P YL ++N+ D+ G V + VDW+S ++ F+Q+PG N++ K FY+ Sbjct: 324 VENPSYLDESNMVAYDKSGAAVNAQSVDWSSASVDDYSFKQNPGSDNSLGRVKFIFYNPY 383 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP 379 Y+HDTP +FN R + GCVRV + L +LL D + E ++ Sbjct: 384 AIYLHDTPAKQMFNEKNRAVSHGCVRVEQPLKLVDFLLNDQKESEKVKSEITGSDNESRW 443 Query: 380 VKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDHPID 429 VK+ V V+ Y +A++ I + DD+YG D + I+ Sbjct: 444 VKVKDPVKVYLAYYTAFADDKDGITWVDDVYGYDPKLKAALENYLPQTIN 493 >gi|255530583|ref|YP_003090955.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter heparinus DSM 2366] gi|255343567|gb|ACU02893.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter heparinus DSM 2366] Length = 471 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 145/301 (48%), Gaps = 18/301 (5%) Query: 120 ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 + G LD + S + +++A+K Q ++A + L++N Sbjct: 187 LKGYLDSIQPKSGQY-LALQAALKA-Q---------------VQAQEKTISQTGELLKLN 229 Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 L R++ + GL+YV VNI SL+ ++ GK+ LR V VG RQTP L S I + Sbjct: 230 LERLR-WKNRPPGLKYVRVNIADFSLDVIDKGKLVLRMKVCVGEAARQTPQLSSMIYSVQ 288 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W IP SI + +++ +D YL +N+I++ + +E +DW EP ++ F+ Sbjct: 289 VNPVWNIPESIARNEIIKYASRDKYYLANNSINVFKNGKRVWDLEAIDWGKAEPGSYSFK 348 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 Q PG N++ K F + ++ Y+HDTP FN R + GCVRV ++L L Sbjct: 349 QRPGMKNSLGKIKFLFKNESSVYLHDTPVKSAFNQKNRAISHGCVRVEKPLELAFVLFGK 408 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGI 419 P + + + + L T +P+ Y +A + + + F DIYGLD++ Sbjct: 409 GPKYDQVKNAMQSGYPREKYIGLPTAIPISIAYYTALADQQGKVIFNKDIYGLDDMLAEE 468 Query: 420 I 420 + Sbjct: 469 L 469 >gi|300773386|ref|ZP_07083255.1| peptidoglycan-binding domain 1 protein [Sphingobacterium spiritivorum ATCC 33861] gi|300759557|gb|EFK56384.1| peptidoglycan-binding domain 1 protein [Sphingobacterium spiritivorum ATCC 33861] Length = 488 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 76/258 (29%), Positives = 126/258 (48%), Gaps = 14/258 (5%) Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV----------- 224 + + L +++ + + +YV+VNIP L V+N K V VG Sbjct: 226 ICLTLEKLR-WMGKDFPEKYVVVNIPEQKLRMVDNRKTKDVMNVCVGETIYGPYARRAGA 284 Query: 225 --DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + +TP+L ++R+ NP W IP SI++K++++ LR +P YL+ N+ ++KG+ V Sbjct: 285 TDNHETPVLSGELDRMQVNPVWNIPVSIVKKELISSLRSNPNYLESRNMVAYNKKGQMVD 344 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 VDW+S NF F+Q+PG N++ + K F + + Y+HDTP +F+ R + G Sbjct: 345 PNTVDWSSDSVLNFKFKQNPGADNSLGNIKFIFSNPYSIYLHDTPAKQMFSAKNRAVSHG 404 Query: 343 CVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 CVRV L +L+ D + E K+ V + +PV+ Y + W D Sbjct: 405 CVRVERPAALAAFLVNDDKKAEQIATEIADTLNKSRWVMMKKTIPVYITYYTTWVDDDGK 464 Query: 403 IQFRDDIYGLDNVHVGII 420 + DIYG D + Sbjct: 465 LYRLPDIYGYDERLKKAM 482 >gi|113461215|ref|YP_719284.1| hypothetical protein HS_1072 [Haemophilus somnus 129PT] gi|112823258|gb|ABI25347.1| conserved hypothetical protein [Haemophilus somnus 129PT] Length = 475 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 75/244 (30%), Positives = 132/244 (54%), Gaps = 7/244 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + +L +N R++ + + G + VNIP+ L +GK+ L S VIVG+ R+TP+++ Sbjct: 222 LYKLAINAQRLRIIPDFNNG---IFVNIPSYQLNYYRDGKLVLNSKVIVGKKARKTPVMY 278 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ I+ NP W+ +I +D++ ++ DP Y+ N+ + D KG+ + +DWN+ Sbjct: 279 SKLSNIVVNPPWIPTPRLINEDIVPKIKLDPDYVARNSYTISDSKGQVIDPSSIDWNTIG 338 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ PG +A+ + K S + Y+HDTP LF+ R +SGCVRV Sbjct: 339 TNFPYRIRQAPG-GSALGNYKFNMPSSDAIYLHDTPNRGLFSKKNRALSSGCVRVEKSDQ 397 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LL + W+ + V+ ++K T + ++ PV+ Y++ W D +++ DIY Sbjct: 398 LATILLTEA-GWTEERKQNVLNSKKNTSENIRSDNPVYLYYVTTWVEND-VVKTLPDIYE 455 Query: 412 LDNV 415 D V Sbjct: 456 YDQV 459 >gi|170717815|ref|YP_001784877.1| hypothetical protein HSM_1557 [Haemophilus somnus 2336] gi|168825944|gb|ACA31315.1| conserved hypothetical protein [Haemophilus somnus 2336] Length = 475 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 132/244 (54%), Gaps = 7/244 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + +L +N R++ + + G + VNIP+ L +G++ L S VIVG+ R+TP+++ Sbjct: 222 LYKLAINAQRLRIIPDFNNG---IFVNIPSYQLNYYRDGELVLNSKVIVGKKARKTPVMY 278 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ I+ NP W+ +I +D++ ++ DP Y+ N+ + D KG+ + ++WN+ Sbjct: 279 SKLSNIVVNPPWIPTPRLINEDIVPKIKLDPDYVARNSYTISDSKGQVIDPSSINWNTIG 338 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ PG +A+ + K S + Y+HDTP LF+ R +SGCVRV Sbjct: 339 TNFPYRIRQAPG-GSALGNYKFNMPSSDAIYLHDTPNRGLFSKKNRALSSGCVRVEKSDQ 397 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L LL + W+ + V+ ++K T + ++ PV+ Y++ W D +++ DIY Sbjct: 398 LATILLTEA-GWTEERKQNVLNSKKNTSENIRSDNPVYLYYVTTWVEND-VVKTLPDIYE 455 Query: 412 LDNV 415 D V Sbjct: 456 YDQV 459 >gi|323137795|ref|ZP_08072871.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322397092|gb|EFX99617.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 495 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 67/258 (25%), Positives = 105/258 (40%), Gaps = 20/258 (7%) Query: 157 VDSS-TLEAMNVPVDLRIRQ-LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 + + ++ RI + N+ R + + +G + VNIP L +G Sbjct: 244 IGPQNSFASLTQGEAKRIEAEIIANMERWR-WEPRDLGATRIEVNIPQFELALTRDGVKT 302 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI 274 R+ V+VG+ TP+ + ++ NP W +P+SII K+M D YL + Sbjct: 303 HRTRVVVGKTSTPTPVFSDTMRYVVINPSWSVPQSIITKEMAGKHGGDLSYLAARGFKVS 362 Query: 275 DEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNN 334 G+ RQ PG+ NA+ K F + + Y+HDTP LF Sbjct: 363 YSNGRA----------------SVRQPPGEKNALGRVKFVFPNEFSVYLHDTPSRSLFAT 406 Query: 335 VVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 R + GCVRV L +L W+ + + + LA +PVH Y + Sbjct: 407 ARRAYSHGCVRVDQPFALAEAVLTADAGWTEKRL-RGMVGASERRIDLARPMPVHIEYFT 465 Query: 395 AWSPKDSIIQFRDDIYGL 412 A D ++ DDIYG Sbjct: 466 ATVDADGQLRLFDDIYGY 483 >gi|256423860|ref|YP_003124513.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] gi|256038768|gb|ACU62312.1| ErfK/YbiS/YcfS/YnhG family protein [Chitinophaga pinensis DSM 2588] Length = 478 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 92/374 (24%), Positives = 167/374 (44%), Gaps = 22/374 (5%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL 102 Y ++ N+ F+ L +V+ S + IAFY D L R + + + Sbjct: 117 LYSALANNNFNKLLEKVEP---------SAPQYNALKSMIAFYNDRLQRQDYHPV---KI 164 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + S L ++L G LD A + + ++ + G + + Sbjct: 165 TSETADSSNHPLIDKLYQLGFLDAPDY--TAHEDTLRIKIRAAEYMFEFLEDGALRQGVI 222 Query: 163 EAMNVPVDLRIRQL--QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 E +NV ++ R+ +L +N R L + V+V+IPAA L L S VI Sbjct: 223 EELNVSLEKRLSELKHAINTFRWLNCLRKY--QYVVVVDIPAAELFVYLGDSTMLNSRVI 280 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ-YLKDNNIHMIDEKGK 279 VG+ + L SRI+ ++ PYW +P +I K+++ ++ P YL+ N ++D+ G+ Sbjct: 281 VGKAKTPSSPLASRIDEVILFPYWTVPHNIAVKELLPGIKGAPSIYLEAGNYQVLDKSGR 340 Query: 280 EVFVEEVDWNSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 + + ++WN+ NF + RQ G N++ K+ F++ +TY+HDTP F R Sbjct: 341 ILDPQSINWNTLNKHNFPYTLRQMFGCDNSLGIIKLNFFNPYSTYLHDTPARSYFMFNSR 400 Query: 338 FETSGCVRVRNIIDLDVWLL-KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 + + GC+RV + I L L+ + P + + + +PV +Y AW Sbjct: 401 YFSHGCIRVEDAIPLAKLLVPAEAPRIDSLSRMKTPPAGSPITIPMKPGIPVIILYEVAW 460 Query: 397 SPKDSIIQFRDDIY 410 + ++F +D+Y Sbjct: 461 PDANGKVRFFEDVY 474 >gi|289804603|ref|ZP_06535232.1| hypothetical protein Salmonellaentericaenterica_09007 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 443 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 91/370 (24%), Positives = 145/370 (39%), Gaps = 80/370 (21%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 100 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 146 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 147 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLTNTATLRPGQWSNDV 195 Query: 112 QRLRERLIISGDLD-----------------------------------------PSKGL 130 LRE L +G LD Sbjct: 196 PALREILQRTGMLDGGPKIALPGDNTSDSAVVSPSAVVDETSVAQPVDEPTARRSKPAPA 255 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + A+D + AVK FQ GL G++ +T +N+ R L +N+ R++ L + Sbjct: 256 ARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAEL 315 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 ++VNIPA SL +NG L S VIVGR DR+TP++ S +N ++ NP W +P ++ Sbjct: 316 --STGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTL 373 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNSPEPPNFIFR--QDPGKIN 306 +KD++ + DP YL+ + ++ + + +VDW + P N FR Q PG N Sbjct: 374 ARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHN 433 Query: 307 AMASTKIEFY 316 ++ K Sbjct: 434 SLGRYKFNMP 443 >gi|149277939|ref|ZP_01884078.1| putative periplasmic protein [Pedobacter sp. BAL39] gi|149231137|gb|EDM36517.1| putative periplasmic protein [Pedobacter sp. BAL39] Length = 501 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 90/325 (27%), Positives = 142/325 (43%), Gaps = 43/325 (13%) Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 LD + + ++ A++ G + MN R+ L+ NL R Sbjct: 188 YLDSIQPKDPQY-LALQEALRQ----------GAMGQG----MNKEESSRV--LKANLER 230 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG-------------------- 222 ++ + +YVLVNI +L+ V+N K L+ V VG Sbjct: 231 LR-WKNKPTQQKYVLVNIADFTLDVVDNNKSVLKMKVCVGEGRNENFKDRVLKEYDETGL 289 Query: 223 RVDRQ----TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 + DR TP L+S I+ + NP W IP SI K++ +D YL +NNI + + Sbjct: 290 KKDRPFSRETPQLNSMIHSVQVNPVWNIPESIATKEISRYAAKDRFYLSNNNIDVFENGK 349 Query: 279 KEVFVEEVDWNSPEPP-NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 + E +D+++ + + F+Q PG N++ K F + + Y+HDTP F+ VR Sbjct: 350 RIEDPETIDFSAGDAGSRYTFKQRPGNDNSLGKIKFLFKNDESVYLHDTPAKAAFDLPVR 409 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWS 397 + GCVRV +L L D + E K + L+ +VPV+ Y +AW Sbjct: 410 AVSHGCVRVEKPSELAKALFGDGQKYQTIQKEMQSKQPVAKDISLSPQVPVYLTYFTAWK 469 Query: 398 PKDSIIQFRDDIYGLDNVHVGIIPL 422 + +QFR DIYGLD V + Sbjct: 470 DEQGNMQFRKDIYGLDIVLDSYLQR 494 >gi|227536728|ref|ZP_03966777.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227243420|gb|EEI93435.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 488 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 74/258 (28%), Positives = 125/258 (48%), Gaps = 14/258 (5%) Query: 176 LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV----------- 224 + + L +++ + +Y++VNIP L V+N K V VG Sbjct: 226 IYLTLEKLR-WRGKDFPEKYIIVNIPEQKLRMVDNRKTKEVMNVCVGETIYGPYARRAGA 284 Query: 225 --DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + +TP+L ++R+ NP W IP SI++K++++ LR +P YL+ N+ ++KG+ V Sbjct: 285 TDNHETPVLSGELDRMQVNPVWNIPASIVKKELISSLRSNPNYLESRNMVAYNKKGQMVD 344 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 VDW+S NF F+Q+PG N++ + K F + + Y+HDTP +F+ R + G Sbjct: 345 PNTVDWSSDSVLNFKFKQNPGADNSLGNIKFIFSNPYSIYLHDTPAKQMFSAKNRAVSHG 404 Query: 343 CVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 CVRV L +L+ D + E K+ V + +PV+ Y + W + Sbjct: 405 CVRVEKPAALAAFLVNDEKKAEQIATEIADTLNKSRWVMMKKTIPVYITYYTTWVDDEGK 464 Query: 403 IQFRDDIYGLDNVHVGII 420 + DIYG D + Sbjct: 465 LYKLPDIYGYDERLKKAM 482 >gi|152992423|ref|YP_001358144.1| hypothetical protein SUN_0829 [Sulfurovum sp. NBC37-1] gi|151424284|dbj|BAF71787.1| hypothetical protein [Sulfurovum sp. NBC37-1] Length = 405 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 80/264 (30%), Positives = 134/264 (50%), Gaps = 11/264 (4%) Query: 163 EAMNVPVDLR---IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 +A+ +R++++++ RIK L++ +G YVLVNIP + +EN K + V Sbjct: 139 KALQRTPGASPQALRKVRMSIERIK-LMKPGLGKTYVLVNIPEFRVRVIENDKTSIAMGV 197 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHM---IDE 276 I G+ D QTPI + I+ NP W +P SI + +++ L +DP YLK + + M + Sbjct: 198 ITGKKDHQTPIFSENLQYIVLNPTWNVPDSIARNEVIPKLLKDPGYLKKHRLVMRRDYNL 257 Query: 277 KGKEVFVEEVDWNSPEPPN----FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILF 332 + V+ + + F F + P NA+ K F + ++ YMHDTP LF Sbjct: 258 DSPALSPGSVNLRAYKGGKGDVPFKFIEVPSDKNALGRVKFIFPNHHSVYMHDTPTKYLF 317 Query: 333 NNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVY 392 VR + GCVR++N + +L + +S E + KT +K+ +PVH Y Sbjct: 318 KRNVRAYSHGCVRLQNPKLMLKYLTEHYTNYSFEEAMEKYNSYKTQYMKIIKPLPVHTAY 377 Query: 393 ISAWSPKDSIIQFRDDIYGLDNVH 416 ++A+ +D ++ DIYGLD + Sbjct: 378 LTAYVEEDGTLKVFPDIYGLDAMQ 401 >gi|319957191|ref|YP_004168454.1| erfk/ybis/ycfs/ynhg family protein [Nitratifractor salsuginis DSM 16511] gi|319419595|gb|ADV46705.1| ErfK/YbiS/YcfS/YnhG family protein [Nitratifractor salsuginis DSM 16511] Length = 423 Score = 285 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 16/261 (6%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + + R+++++L R K + Y LVNIP + ENG++ S V+VG+ QT Sbjct: 159 EAQRRKVRLSLERSKLMDPDPTHWQTYFLVNIPEFRVRFFENGRLAFVSDVVVGKKSWQT 218 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG---KEVFVEE 285 PI + + ++ NP W +P +I + + + L +DP Y K + ++ V Sbjct: 219 PIFSAAMKYVVLNPTWNVPDNIARAEEIPHLLRDPNYFKHKRMIVLRSYDLDTTPVNPRS 278 Query: 286 VDWNSPEPP-------NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 V W P + Q P K NA+ K F + N+ YMHDTP LF +R Sbjct: 279 VPWRKYLRPEWKKKDLPYKLIQLPAKGNALGRVKFLFPNGNSVYMHDTPAKSLFKRKIRA 338 Query: 339 ETSGCVRVRNIIDLDVWLLKD---TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 + GC+R+ I++ +L + + W++ +EE +K+ K V L +PVH Y +A Sbjct: 339 YSHGCIRLARPIEMLRYLAQHGYLSKDWTQ--VEEELKSWKRHNVSLKEPIPVHVGYFTA 396 Query: 396 WSPKDSIIQFRDDIYGLDNVH 416 + + +QF DIYG D + Sbjct: 397 YVSQGGGVQFFPDIYGYDQIM 417 >gi|308050064|ref|YP_003913630.1| ErfK/YbiS/YcfS/YnhG family protein [Ferrimonas balearica DSM 9799] gi|307632254|gb|ADN76556.1| ErfK/YbiS/YcfS/YnhG family protein [Ferrimonas balearica DSM 9799] Length = 459 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 92/364 (25%), Positives = 160/364 (43%), Gaps = 7/364 (1%) Query: 55 FLARVDMGIDSDIPIISKET--IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQ 112 A +D I ++ E A+ A+ + I P++ L LG S + Sbjct: 94 MAAEQQGQLDRLIANLTPEYRGFARLRSALVRERQIERVPIPGLAPLQSLGLGQSHPDLA 153 Query: 113 RLRERLII-SGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 +LR L I G+ L P+ +D + +K +Q +GL +G +DS+T + Sbjct: 154 QLRRALAIRLGEALPPTLQDRPVWDPPFTALLKQYQDSNGLSATGRLDSATRRHLGSVGQ 213 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 RI +Q +L + +L ++ G +LVNIP L + + V L VIVG TP Sbjct: 214 DRIAAIQYSLRQWYQLPDRIEGYA-MLVNIPRYELLVLNDEAVELAVPVIVGSPANPTPK 272 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 ++S + + NP W P SI++ +++ RQDP L + + + +V + Sbjct: 273 MNSYFSSVTLNPSWTPPMSIVRNELLPGYRQDPTTLHRQGFEWVGKGQSRLPWTQVTPEN 332 Query: 291 PEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + RQ PG+ N + + Y+HDT P LF R + GCVRV Sbjct: 333 VNNVLGRYQLRQKPGRNNPLGKVRFNLAQSRAIYLHDTNNPRLFRQSQRALSHGCVRVAE 392 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 + +LL + + + + + ++ + ++ + V V+ VY+ AW D+ + DD Sbjct: 393 YQRVLDYLLANESSGRQRQVAQALQQHDSVTARVGSRVAVYLVYMPAWVGPDNRLHLVDD 452 Query: 409 IYGL 412 +YG Sbjct: 453 VYGW 456 >gi|300024880|ref|YP_003757491.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] gi|299526701|gb|ADJ25170.1| ErfK/YbiS/YcfS/YnhG family protein [Hyphomicrobium denitrificans ATCC 51888] Length = 557 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 125/250 (50%), Gaps = 2/250 (0%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L+ N+ + + MG YVL NIP ++G++ + ++ G VD+++ I Sbjct: 251 AKRLRANMEMWR-WMWPDMGDFYVLNNIPEFMQYVYKDGEIIRSAKIVAGEVDKKSTIFS 309 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 + ++ P W +P SI+ ++ L + ++ + + + G+ V + DW+S + Sbjct: 310 RPLKYVVLRPAWRVPESIMVNELWPSLIRGGGLMRQYGLQLQTKDGRRVDWRQYDWSSTD 369 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 NFI Q PG + + K F S++ +MHDTP+ +F R + GC+RV+N + L Sbjct: 370 IRNFIVLQPPGPKSVLGRVKFSFPSQHTIFMHDTPDKWMFRPAQRTLSHGCLRVQNPMQL 429 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRK-TTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 +LK+ W I E+ ++ V ++ E+P+H VY +AW D ++ +D+YG Sbjct: 430 AEMVLKEDKGWDAAKIAELDRSGPLNNEVPISKEIPIHLVYFTAWVTDDGKLKTFNDVYG 489 Query: 412 LDNVHVGIIP 421 + + Sbjct: 490 HEKRVTLALD 499 >gi|323136049|ref|ZP_08071132.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] gi|322399140|gb|EFY01659.1| ErfK/YbiS/YcfS/YnhG family protein [Methylocystis sp. ATCC 49242] Length = 537 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 81/311 (26%), Positives = 125/311 (40%), Gaps = 29/311 (9%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 Q+LRE+L +L + +A V SA + Q P A Sbjct: 254 QQLREKLA---ELHSQRAAGLAGAERVASAEEGLQTDADPPPLKSRKRRAASAGGGSTSA 310 Query: 172 RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 ++ N+ R + L + +G + VNIP L V G V R+ VIVG+ TPI Sbjct: 311 LEAEIVANMERWR-WLPRDLGDERIEVNIPDFELAVVRGGMVTHRTRVIVGKEQTPTPIF 369 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP 291 + I+ NP W +P+SIIQK+ + + G+ V Sbjct: 370 SDEMVEIIVNPSWYVPQSIIQKEWHGGVGA--------GYQVSYRNGQMV---------- 411 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 RQ PG+ NA+ K F + YMHDTP LF R + GC+RV + Sbjct: 412 ------VRQPPGEKNALGRIKFVFPNDFAVYMHDTPSRGLFAASHRAFSHGCMRVDDPFA 465 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYG 411 L +L WS +++++ + L+ +PVH Y +A+ + + R D+YG Sbjct: 466 LAGAVLGPGSGWSEARVKKLI-GPSERYINLSKPLPVHIQYFTAYVDEGGRLVQRPDLYG 524 Query: 412 LDNVHVGIIPL 422 + L Sbjct: 525 YSARVRKALGL 535 >gi|288959756|ref|YP_003450096.1| hypothetical protein AZL_a00210 [Azospirillum sp. B510] gi|288912064|dbj|BAI73552.1| hypothetical protein AZL_a00210 [Azospirillum sp. B510] Length = 545 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 87/320 (27%), Positives = 151/320 (47%), Gaps = 9/320 (2%) Query: 95 PELPIRPLHLGNSSV---SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 P P P+ + S V +L RLI G L P+ + +F+ VE+AV+ FQ GL Sbjct: 153 PIEPAPPVVITVRSPLADRVGKLSRRLIELGLL-PADKWTDSFNDDVEAAVRAFQTTEGL 211 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 P G V T +A++ + L+ + + + +LVN+P S+ +E+G Sbjct: 212 QPDGKVGEVTRQALDRTPAQTVALLRRAAA-AMRAQQASIPDTSILVNLPGQSVTLIEHG 270 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 + +VGR R+TP+L ++ + NP W +P +++ +D + LR+ N Sbjct: 271 RPTFTMRAVVGRPSRKTPLLQDKVTSVTINPTWTVPPTVLSEDKLPALRKKGTTGIKN-- 328 Query: 272 HMIDEKGKEVFVEE-VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPI 330 ++ G EV + V+W S +P Q PG NA+ + + + ++H T +P Sbjct: 329 AVVYLDGAEVASTQSVNWWSVDPGRVRIVQKPGDDNALGRFRFNLTNGDGIFLHGTNDPR 388 Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 LF+ +R +SGCVR+ + + LL + I + + T T ++L +PV F Sbjct: 389 LFSRDLRAASSGCVRLEDARLMAETLLGAAKV-TPAGIGQQLDTGDTKTIRLPVAIPVRF 447 Query: 391 VYISAWSPKDSIIQFRDDIY 410 VY +A +++ DIY Sbjct: 448 VYWNASVDTAGVVRVHPDIY 467 >gi|237721416|ref|ZP_04551897.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229449212|gb|EEO55003.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 518 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 71/274 (25%), Positives = 121/274 (44%), Gaps = 19/274 (6%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDR 226 D +L VN+ R + G +YV+ N+ A L+AV E L + VG V Sbjct: 240 TTDYYRDRLLVNMERARWQYALDKGRKYVIANVAAFMLQAVNEETDSILEMRICVGTVKN 299 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 +TP+L SRI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + Sbjct: 300 KTPLLSSRIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVDPHSI 359 Query: 287 DWNSPEPP--NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 W + +QD N++ F + ++ Y+HDTP F R + GCV Sbjct: 360 KWAKYAGSGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCV 419 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVK------TRKTTPV----------KLATEVPV 388 R++ +D +LLK+ I + K P+ L +P+ Sbjct: 420 RLQKALDFAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPL 479 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 Y + + D+ +++ +DIY D + + Sbjct: 480 FIDYQTVYLSADNNLRYCEDIYKYDPSLLEAMNN 513 >gi|260171549|ref|ZP_05757961.1| ErfK/YbiS/YcfS/YnhG family protein [Bacteroides sp. D2] Length = 518 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 71/274 (25%), Positives = 121/274 (44%), Gaps = 19/274 (6%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDR 226 D +L VN+ R + G +YV+ N+ A L+AV E L + VG V Sbjct: 240 TTDYYRDRLLVNMERARWQYALDKGRKYVIANVAAFMLQAVNEETDSILEMRICVGTVKN 299 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 +TP+L SRI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + Sbjct: 300 KTPLLSSRIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVDPHSI 359 Query: 287 DWNSPEPP--NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 W + +QD N++ F + ++ Y+HDTP F R + GCV Sbjct: 360 KWAKYAGSGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCV 419 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVK------TRKTTPV----------KLATEVPV 388 R++ +D +LLK+ I + K P+ L +P+ Sbjct: 420 RLQKALDFAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPL 479 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 Y + + D+ +++ +DIY D + + Sbjct: 480 FIDYQTVYLSTDNNLRYCEDIYKYDPSLLEAMNN 513 >gi|293370854|ref|ZP_06617399.1| conserved domain protein [Bacteroides ovatus SD CMC 3f] gi|292634070|gb|EFF52614.1| conserved domain protein [Bacteroides ovatus SD CMC 3f] Length = 513 Score = 279 bits (714), Expect = 6e-73, Method: Composition-based stats. Identities = 71/274 (25%), Positives = 121/274 (44%), Gaps = 19/274 (6%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDR 226 D +L VN+ R + G +YV+ N+ A L+AV E L + VG V Sbjct: 235 TTDYYRDRLLVNMERARWQYALDKGRKYVIANVAAFMLQAVNEETDSILEMRICVGTVKN 294 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 +TP+L SRI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + Sbjct: 295 KTPLLSSRIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGFQVDPHSI 354 Query: 287 DWNSPEPP--NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 W + +QD N++ F + ++ Y+HDTP F R + GCV Sbjct: 355 KWAKYAGSGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCV 414 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVK------TRKTTPV----------KLATEVPV 388 R++ +D +LLK+ I + K P+ L +P+ Sbjct: 415 RLQKALDFAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPL 474 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 Y + + D+ +++ +DIY D + + Sbjct: 475 FIDYQTVYLSADNNLRYCEDIYKYDPSLLEAMNN 508 >gi|160887148|ref|ZP_02068151.1| hypothetical protein BACOVA_05164 [Bacteroides ovatus ATCC 8483] gi|156107559|gb|EDO09304.1| hypothetical protein BACOVA_05164 [Bacteroides ovatus ATCC 8483] Length = 513 Score = 279 bits (714), Expect = 6e-73, Method: Composition-based stats. Identities = 71/274 (25%), Positives = 121/274 (44%), Gaps = 19/274 (6%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDR 226 D +L VN+ R + G +YV+ N+ A L+AV E L + VG V Sbjct: 235 TTDYYRDRLLVNMERARWQYALDKGQKYVIANVAAFMLQAVNEETDSILEMRICVGTVKN 294 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 +TP+L SRI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + Sbjct: 295 KTPLLSSRIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVDPHSI 354 Query: 287 DWNSPEPP--NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 W + +QD N++ F + ++ Y+HDTP F R + GCV Sbjct: 355 KWAKYAGSGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCV 414 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVK------TRKTTPV----------KLATEVPV 388 R++ +D +LLK+ I + K P+ L +P+ Sbjct: 415 RLQKALDFAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPL 474 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 Y + + D+ +++ +DIY D + + Sbjct: 475 FIDYQTVYLSADNNLRYCEDIYKYDPSLLEAMNN 508 >gi|315919863|ref|ZP_07916103.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693738|gb|EFS30573.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 513 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 71/274 (25%), Positives = 121/274 (44%), Gaps = 19/274 (6%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDR 226 D +L VN+ R + G +YV+ N+ A L+AV E L + VG V Sbjct: 235 TTDYYRDRLLVNMERARWQYALDKGRKYVIANVAAFMLQAVNEETDSILEMRICVGTVKN 294 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 +TP+L SRI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + Sbjct: 295 KTPLLSSRIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVDPHSI 354 Query: 287 DWNSPEPP--NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 W + +QD N++ F + ++ Y+HDTP F R + GCV Sbjct: 355 KWAKYAGSGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCV 414 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVK------TRKTTPV----------KLATEVPV 388 R++ +D +LLK+ I + K P+ L +P+ Sbjct: 415 RLQKALDFAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPL 474 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 Y + + D+ +++ +DIY D + + Sbjct: 475 FIDYQTVYLSTDNNLRYCEDIYKYDPSLLEAMNN 508 >gi|299148640|ref|ZP_07041702.1| putative periplasmic protein [Bacteroides sp. 3_1_23] gi|298513401|gb|EFI37288.1| putative periplasmic protein [Bacteroides sp. 3_1_23] Length = 513 Score = 279 bits (713), Expect = 8e-73, Method: Composition-based stats. Identities = 71/274 (25%), Positives = 121/274 (44%), Gaps = 19/274 (6%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDR 226 D +L VN+ R + G +YV+ N+ A L+AV E L + VG V Sbjct: 235 TTDYYRDRLLVNMERARWQYALDKGRKYVIANVAAFMLQAVNEETDSILEMRICVGTVKN 294 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 +TP+L SRI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + Sbjct: 295 KTPLLSSRIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVDPHSI 354 Query: 287 DWNSPEPP--NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 W + +QD N++ F + ++ Y+HDTP F R + GCV Sbjct: 355 KWAKYAGSGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCV 414 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVK------TRKTTPV----------KLATEVPV 388 R++ +D +LLK+ I + K P+ L +P+ Sbjct: 415 RLQKALDFAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPL 474 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 Y + + D+ +++ +DIY D + + Sbjct: 475 FIDYQTVYLSTDNNLRYCEDIYKYDPSLLEAMNN 508 >gi|295086942|emb|CBK68465.1| Uncharacterized protein conserved in bacteria [Bacteroides xylanisolvens XB1A] Length = 513 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 72/274 (26%), Positives = 123/274 (44%), Gaps = 19/274 (6%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDR 226 D +L VN+ R + G +YV+ N+ A L+A+ E L + VG V Sbjct: 235 TTDYYRNRLLVNMERARWQYALDKGQKYVIANVAAFMLQAINEETDSILEMRICVGSVKN 294 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 +TP+L SRI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V +V Sbjct: 295 KTPLLSSRIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVNPHQV 354 Query: 287 DWNSPEPP--NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 +W + +QD N++ F + ++ Y+HDTP F R + GCV Sbjct: 355 NWAKYAGKGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCV 414 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVK------TRKTTPV----------KLATEVPV 388 R++ +D +LLK+ I + K PV L +P+ Sbjct: 415 RLQKALDFAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPVSAAYRELKHYSLEKYIPL 474 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 Y + + D+ +++ +DIY D + + Sbjct: 475 FIDYQTVYLSADNNLRYCEDIYKYDPSLLEAMNN 508 >gi|294646674|ref|ZP_06724299.1| conserved domain protein [Bacteroides ovatus SD CC 2a] gi|294807105|ref|ZP_06765923.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b] gi|292637962|gb|EFF56355.1| conserved domain protein [Bacteroides ovatus SD CC 2a] gi|294445671|gb|EFG14320.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 521 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 137/320 (42%), Gaps = 30/320 (9%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV--------PVDLRIRQLQVNLM 181 + A D+ + + F HG PS + E + D +L VN+ Sbjct: 200 ANAALDSLRANPIAAF---HGAQPSSPLYRKMQEELVRVNAWGKTDTTDYYRNRLLVNME 256 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 R + G +YV+ N+ A L+A+ E L + VG V +TP+L SRI + Sbjct: 257 RARWQYALDKGQKYVIANVAAFMLQAINEETDSILEMRICVGSVKNKTPLLSSRIYYMEL 316 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP--NFIF 298 NPYW +P+SII+K+++ R+D Y N + + D+ G +V +V+W + Sbjct: 317 NPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVNPHQVNWAKYAGKGVPYTV 376 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 +QD N++ F + ++ Y+HDTP F R + GCVR++ +D +LLK Sbjct: 377 KQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKALDFAFFLLK 436 Query: 359 DTPTWSRYHIEEVVK------TRKTTPV----------KLATEVPVHFVYISAWSPKDSI 402 + I + K PV L +P+ Y + + D+ Sbjct: 437 EPDELLEDRIRIAMDIKPVSEEGKKLPVSAAYRELKHYSLEKYIPLFIDYQTVYLSADNN 496 Query: 403 IQFRDDIYGLDNVHVGIIPL 422 +++ +D Y D+ + + Sbjct: 497 LRYCEDTYKYDSSLLEAMNN 516 >gi|298481479|ref|ZP_06999671.1| periplasmic protein [Bacteroides sp. D22] gi|298272343|gb|EFI13912.1| periplasmic protein [Bacteroides sp. D22] Length = 513 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 72/274 (26%), Positives = 123/274 (44%), Gaps = 19/274 (6%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDR 226 D +L VN+ R + G +YV+ N+ A L+A+ E L + VG V Sbjct: 235 TTDYYRNRLLVNMERARWQYALDKGQKYVIANVAAFMLQAINEETDSILEMRICVGSVKN 294 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 +TP+L SRI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V +V Sbjct: 295 KTPLLSSRIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVNPHQV 354 Query: 287 DWNSPEPP--NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 +W + +QD N++ F + ++ Y+HDTP F R + GCV Sbjct: 355 NWAKYAGKGVPYTVKQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCV 414 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVK------TRKTTPV----------KLATEVPV 388 R++ +D +LLK+ I + K PV L +P+ Sbjct: 415 RLQKALDFAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPVSAAYRELKHYSLEKYIPL 474 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 Y + + D+ +++ +DIY D + + Sbjct: 475 FIDYQTVYLSADNNLRYCEDIYKYDPSLLEAMNN 508 >gi|237715634|ref|ZP_04546115.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229444343|gb|EEO50134.1| conserved hypothetical protein [Bacteroides sp. D1] Length = 518 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 137/320 (42%), Gaps = 30/320 (9%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV--------PVDLRIRQLQVNLM 181 + A D+ + + F HG PS + E + D +L VN+ Sbjct: 197 ANAALDSLRANPIAAF---HGAQPSSPLYRKMQEELVRVNAWGKTDTTDYYRNRLLVNME 253 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 R + G +YV+ N+ A L+A+ E L + VG V +TP+L SRI + Sbjct: 254 RARWQYALDKGQKYVIANVAAFMLQAINEETDSILEMRICVGSVKNKTPLLSSRIYYMEL 313 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP--NFIF 298 NPYW +P+SII+K+++ R+D Y N + + D+ G +V +V+W + Sbjct: 314 NPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVNPHQVNWAKYAGKGVPYTV 373 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 +QD N++ F + ++ Y+HDTP F R + GCVR++ +D +LLK Sbjct: 374 KQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKALDFAFFLLK 433 Query: 359 DTPTWSRYHIEEVVK------TRKTTPV----------KLATEVPVHFVYISAWSPKDSI 402 + I + K PV L +P+ Y + + D+ Sbjct: 434 EPDELLEDRIRIAMDIKPVSEEGKKLPVSAAYRELKHYSLEKYIPLFIDYQTVYLSADNN 493 Query: 403 IQFRDDIYGLDNVHVGIIPL 422 +++ +D Y D+ + + Sbjct: 494 LRYCEDTYKYDSSLLEAMNN 513 >gi|326798188|ref|YP_004316007.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobacterium sp. 21] gi|326548952|gb|ADZ77337.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobacterium sp. 21] Length = 487 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 79/324 (24%), Positives = 145/324 (44%), Gaps = 14/324 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSS 160 L G ++ R + S+ SV+FD + +K + + P + Sbjct: 172 LEYGMTNPRKVLPRY------YIPVSRPDSVSFDRVLSVENLKHYLDS--IQPKSGAYRA 223 Query: 161 TLEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 +A+ N + L N+ R++ + + VNIPA L + + + V Sbjct: 224 MQKALINENHGAKKIALIANMERLRWKYKMD-STHLIYVNIPAYQLYIIRDRSTKGQMKV 282 Query: 220 IVGRVD-RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG 278 +VG+ D +TP+L S+I+ + NP W IP SI +K+++ + D YL ++ + + Sbjct: 283 VVGKADGHETPMLASKIHSVQVNPIWNIPTSIAKKEILVQAKADKYYLANHGMDVYRRGV 342 Query: 279 KEVFVEEVDWNSPEPPN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 K + +DW+ N + F+Q PG N++ K F + ++ Y+HDTP +F+ + Sbjct: 343 KIANPDTIDWSVYNEENLPYSFKQQPGNTNSLGLIKFLFKNGSSVYLHDTPAKAVFSRSM 402 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R + GCVRV +DL L + + E + + L +VPV Y++ Sbjct: 403 RAASHGCVRVEKPLDLARALFGEGEKYDLIKEEMSSEEPVAKTIGLKPQVPVVLDYVTCK 462 Query: 397 SPKDSIIQFRDDIYGLDNVHVGII 420 S ++F D+Y LD++ + Sbjct: 463 MDSSSTLKFYPDVYKLDSLLYRSL 486 >gi|262408643|ref|ZP_06085189.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|262353508|gb|EEZ02602.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 513 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 137/320 (42%), Gaps = 30/320 (9%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV--------PVDLRIRQLQVNLM 181 + A D+ + + F HG PS + E + D +L VN+ Sbjct: 192 ANAALDSLRANPIAAF---HGAQPSSPLYRKMQEELVRVNAWGKTDTTDYYRNRLLVNME 248 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 R + G +YV+ N+ A L+A+ E L + VG V +TP+L SRI + Sbjct: 249 RARWQYALDKGQKYVIANVAAFMLQAINEETDSILEMRICVGSVKNKTPLLSSRIYYMEL 308 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP--NFIF 298 NPYW +P+SII+K+++ R+D Y N + + D+ G +V +V+W + Sbjct: 309 NPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGLQVNPHQVNWAKYAGKGVPYTV 368 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 +QD N++ F + ++ Y+HDTP F R + GCVR++ +D +LLK Sbjct: 369 KQDNKTGNSLGRIIFRFPNPHSVYLHDTPSRWAFTRNNRAVSHGCVRLQKALDFAFFLLK 428 Query: 359 DTPTWSRYHIEEVVK------TRKTTPV----------KLATEVPVHFVYISAWSPKDSI 402 + I + K PV L +P+ Y + + D+ Sbjct: 429 EPDELLEDRIRIAMDIKPVSEEGKKLPVSAAYRELKHYSLEKYIPLFIDYQTVYLSADNN 488 Query: 403 IQFRDDIYGLDNVHVGIIPL 422 +++ +D Y D+ + + Sbjct: 489 LRYCEDTYKYDSSLLEAMNN 508 >gi|153807673|ref|ZP_01960341.1| hypothetical protein BACCAC_01955 [Bacteroides caccae ATCC 43185] gi|149130035|gb|EDM21247.1| hypothetical protein BACCAC_01955 [Bacteroides caccae ATCC 43185] Length = 514 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 70/272 (25%), Positives = 121/272 (44%), Gaps = 19/272 (6%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDR 226 D +L VN+ R + + G +YV+ N A L+AV E L + VG V Sbjct: 236 TTDYYRNRLLVNMERARWQYALEKGKKYVVANTAAFMLQAVNEETDSILEMRICVGSVKN 295 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEV 286 +TP+L S+I + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + Sbjct: 296 RTPLLSSKIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGTQVDPHSI 355 Query: 287 DWNSPEPP--NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 W + +QD N++ F + + Y+HDTP F+ R + GCV Sbjct: 356 KWAKYAGKGVPYTVKQDNKAGNSLGRIIFRFPNPYSVYLHDTPSKWAFSRKNRAVSHGCV 415 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVK------TRKTTPV----------KLATEVPV 388 R++ +D +LLK+ I + K P+ L +P+ Sbjct: 416 RLQKALDFAFFLLKEPDELLEDRIRIAMDIKPVSEEGKKLPISAAYRELKHYSLEQYIPL 475 Query: 389 HFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 Y + + D+ +++ +DIY D + + Sbjct: 476 FIDYQTVYLSADNNMRYCEDIYNYDPSLLEAM 507 >gi|312115661|ref|YP_004013257.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodomicrobium vannielii ATCC 17100] gi|311220790|gb|ADP72158.1| ErfK/YbiS/YcfS/YnhG family protein [Rhodomicrobium vannielii ATCC 17100] Length = 569 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 63/251 (25%), Positives = 122/251 (48%), Gaps = 4/251 (1%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L N+ + + + +G YV NIP + V+NG+V + ++ G++D+QTP+ Sbjct: 259 AKRLLANMEQWR-WMPADLGDLYVWNNIPEYTQRVVKNGEVVRKERIVTGQLDKQTPVFT 317 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 + +I F P W++P SI ++++ L++ +++ + + D+ G+ V ++W + Sbjct: 318 RTLKKITFKPTWIVPESIKVREILPSLQRGGGMMREWQLELRDKDGQTVDWRRINWYRTD 377 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDT--PEPILFNNVVRFETSGCVRVRNII 350 F Q G + M K F S++ +MHD P+ +FN R + GC+RV+N I Sbjct: 378 IRIFNVVQPNGAKSVMGKVKFSFPSQHTVFMHDAYPPDKWMFNKARRTYSHGCMRVQNPI 437 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKT-TPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 L LLK+ + + + V+T + +P+H Y +A D + D+ Sbjct: 438 GLAEILLKEDKGFEAAQVRDAVRTGGNDNEFDIERRIPIHMTYFTALVGDDGKLHTFPDV 497 Query: 410 YGLDNVHVGII 420 YG + + Sbjct: 498 YGHERRITLAL 508 >gi|260642730|ref|ZP_05859514.1| putative periplasmic protein [Bacteroides finegoldii DSM 17565] gi|260620827|gb|EEX43698.1| putative periplasmic protein [Bacteroides finegoldii DSM 17565] Length = 512 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 71/267 (26%), Positives = 118/267 (44%), Gaps = 19/267 (7%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILH 232 +L +NL R + G +YV+ N+ A L+AV E L + VG V +TP+L Sbjct: 240 DRLLLNLERARWQYALDKGKKYVVANVAAFMLQAVNEETDSILEMRICVGSVRNKTPLLS 299 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 SRI + NPYW +P+SII+K+++ R+D Y N + + D+ G +V + W Sbjct: 300 SRIYYMELNPYWNVPQSIIRKEIIPTYRRDTTYFTRNRMKVYDKNGTQVDPHSIKWAKYA 359 Query: 293 PP--NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + +QD N++ F + + Y+HDTP F R + GCVR++ + Sbjct: 360 GKGVPYTVKQDNKTGNSLGRIIFRFPNPYSVYLHDTPSRWAFMRKNRAVSHGCVRLQKAL 419 Query: 351 DLDVWLLKDTPTWSRYHIEEVVK------TRKTTPV----------KLATEVPVHFVYIS 394 D +LL++ I + K P+ L VP+ Y + Sbjct: 420 DFAFFLLEEPDELLEDRIRIAMDLKPISEEGKKLPISAAYRELKHYSLEKYVPLFIDYQT 479 Query: 395 AWSPKDSIIQFRDDIYGLDNVHVGIIP 421 + D+ + + DDIY D + + Sbjct: 480 VYLSADNNLMYCDDIYKYDPSLLKAMT 506 >gi|163759199|ref|ZP_02166285.1| hypothetical protein HPDFL43_05525 [Hoeflea phototrophica DFL-43] gi|162283603|gb|EDQ33888.1| hypothetical protein HPDFL43_05525 [Hoeflea phototrophica DFL-43] Length = 250 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 109/233 (46%), Positives = 154/233 (66%), Gaps = 2/233 (0%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAF 84 S S ++ IIN +D+FD +R + PI S +TI E+A+ Sbjct: 18 SAAGAAKAQSTIEAIINSPRRGSWDDQFDAKSSRSVAKTATRYPISSADTIGFVERAVFD 77 Query: 85 YQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 YQDI++RGGWP +P + L +G S V+ LR+RLI SGDL + GLS AFD+YV+ AVK Sbjct: 78 YQDIIARGGWPFVPATKKLRMGVSEPEVRLLRQRLIASGDLSANTGLSNAFDSYVDGAVK 137 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 FQ RHGL P G++ + + +A+NV D+R+ QL+ NL+R++ + +G RYV+VNIPAA Sbjct: 138 KFQARHGLPPDGILGNYSYQALNVSADVRLGQLETNLVRLRS-MSGFLGDRYVMVNIPAA 196 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 +EAVENG+V LR T IVG++DRQTPIL+S+I+ I+ NPYW PR +KD++ Sbjct: 197 QIEAVENGRVVLRHTAIVGKIDRQTPILNSKIHEIILNPYWTSPRLDHRKDIV 249 >gi|42524313|ref|NP_969693.1| putative amidase [Bdellovibrio bacteriovorus HD100] gi|39576522|emb|CAE80686.1| putative amidase [Bdellovibrio bacteriovorus HD100] Length = 510 Score = 265 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 86/354 (24%), Positives = 161/354 (45%), Gaps = 28/354 (7%) Query: 92 GGWPELP--IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 G W ++ PL L + ++ ++ RL + G + + FD + AV Q Sbjct: 158 GTWQDIVPVTTPLRLYSIHPVIREIKSRLALLGY--TMRNMDDRFDGDLLKAVTDIQWNM 215 Query: 150 GLDPSGMVDSS--TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 + P G + ++V R+RQ+QV++ +++ Q +Y+ VN+ + Sbjct: 216 RIRPDGEISPKGKVWSFLSVSCMDRVRQIQVDMEKMR-WFPQYFEKKYIFVNLAMSYFIM 274 Query: 208 VENGK---VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLR---- 260 ++ + I GR R++P + I ++ NP+WV+P +I +D + L+ Sbjct: 275 MDQSTDWPRVMSFRTINGRPARKSPTMRDEIVNVIINPFWVVPPTIFYEDKVNDLKDLTS 334 Query: 261 -QDPQYLKDNNIH-MIDEKGKEVFVEEVDWNSPEP----PNFIFRQDPGKINAMASTKIE 314 Q +Y ++ + ++V +DW P+ I RQ P NA+ K + Sbjct: 335 EQIREYFDSHHYEAWVGGFRRKVDPTTIDWKGIAAGTVDPDIIIRQLPHLGNALGVLKFD 394 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKT 374 + Y+HDT + LF+ +R +SGCVR+ +DL +LL+DTP W R I ++ Sbjct: 395 LTNSFAIYLHDTNQRELFDTPMRQLSSGCVRLEKPLDLAEYLLEDTP-WDRQTIASMMAR 453 Query: 375 R-----KTTPVKLA--TEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 K T + + +PV+ Y+++ D +++F DDIYG + + + Sbjct: 454 PGEVVAKPTEIPVPSYKRMPVYTAYLTSMMNSDEVVRFVDDIYGQNPAVLRHLD 507 >gi|145637696|ref|ZP_01793349.1| hypothetical protein CGSHiHH_01956 [Haemophilus influenzae PittHH] gi|145269098|gb|EDK09048.1| hypothetical protein CGSHiHH_01956 [Haemophilus influenzae PittHH] Length = 461 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 66/220 (30%), Positives = 118/220 (53%), Gaps = 6/220 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 236 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTNSRRTPVMY 292 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 293 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 352 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ Sbjct: 353 NKFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRIEKSEQ 411 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 L LLK+ W+ V+ ++K T + ++ PV ++ Sbjct: 412 LASILLKEA-GWTETRKNTVLASKKNTSAPIRSDNPVFYI 450 >gi|300778249|ref|ZP_07088107.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300503759|gb|EFK34899.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 468 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 123/250 (49%), Gaps = 7/250 (2%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + I+++ +N+ R++ + Y+LVNIPA SL+ V+ K L VIVG+ +P Sbjct: 215 EAEIKKVAINMERLRWM--GISSDAYLLVNIPAYSLDFVQKDK-TLHYKVIVGKPSTPSP 271 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWN 289 +L SR++ P W +P++I K+M+ + ++ QYL++++ + D GK V V Sbjct: 272 VLKSRVDYFTTAPDWKVPQNIFIKEMLPKIIKNSQYLEEHHYSLYDRSGKIVPVTSAKLK 331 Query: 290 SP--EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 +P + RQ G NA+ + F + Y+HDT + LF R + GC+RV Sbjct: 332 QAYRKPYQYSIRQSSGCDNALGAVVFRFSNSYGVYLHDTSQKQLFEKTQRALSHGCIRVE 391 Query: 348 NIIDLDVWLLK-DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFR 406 N DL LLK D ++ + + L VP+ Y++ K+ + F Sbjct: 392 NAGDLAAQLLKHDGTEDEIPLMKSFMDRYERKDFVLKQPVPIMITYLTCLV-KNGKMVFY 450 Query: 407 DDIYGLDNVH 416 +DIY LD V Sbjct: 451 NDIYNLDPVL 460 >gi|85709388|ref|ZP_01040453.1| hypothetical protein NAP1_10923 [Erythrobacter sp. NAP1] gi|85688098|gb|EAQ28102.1| hypothetical protein NAP1_10923 [Erythrobacter sp. NAP1] Length = 460 Score = 262 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 115/273 (42%), Gaps = 21/273 (7%) Query: 159 SSTLEAMNVPVDL---RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 + E + V + + +Q N+ R + L + +G +Y++ N+P L ++ Sbjct: 183 ARLREELAVTPAEEAEKRKLIQANMDRWR-WLARDLGTQYLITNVPEYQLRLTVRDRIIS 241 Query: 216 RSTVIVGRVDR-QTPILHSRINRIMFNPYWVIPRSIIQKDMMA-LLRQDPQYLKDNNIHM 273 +VG+ R TP L + ++FNP W +P+SI++ + + + +P + + N Sbjct: 242 TYRTVVGKPGRTATPQLAEMVEGVVFNPTWTVPQSIVKGEGLGERVLGNPGWARANGYTA 301 Query: 274 IDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFN 333 + Q PG N++ K+E + + + HDTP LF Sbjct: 302 TRGSNGWI---------------TVVQQPGPGNSLGRMKLEMPNPHAIFFHDTPSRHLFA 346 Query: 334 NVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYI 393 N R + GC+R ++L + + +R E+ + K T V + ++P + Y Sbjct: 347 NANRALSHGCIRTERALELAITMAILGKGATRDEAVEIATSGKYTKVMIEKQLPAYITYF 406 Query: 394 SAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDH 426 + + ++ DDIYG D + + P + Sbjct: 407 TMGVDIEGELRTFDDIYGRDAPVLASLDKPREA 439 >gi|85374905|ref|YP_458967.1| hypothetical protein ELI_10390 [Erythrobacter litoralis HTCC2594] gi|84787988|gb|ABC64170.1| hypothetical protein ELI_10390 [Erythrobacter litoralis HTCC2594] Length = 473 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 108/256 (42%), Gaps = 18/256 (7%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR-QT 228 R + ++ N+ R + L + +G +Y++ N+P L N K+ IVG+ R T Sbjct: 209 SERFKLIRANMDRWR-WLPRDLGGQYLMTNVPEYQLRLTVNDKIVRTYKTIVGKPGRTAT 267 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMM-ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 P L + ++ NP W +P+SI++ + + A + +P + + V Sbjct: 268 PQLAEVVEGVILNPTWTVPQSIVKGEGLGAKVLNNPGWARAKGYKATKGANGWV------ 321 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 Q PG N++ K++ +R+ ++HDTP LF R + GC+R Sbjct: 322 ---------TVVQQPGPTNSLGRMKLDMPNRHAIFLHDTPSRNLFGTSNRALSHGCIRTE 372 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 +L + L + E++ + + T V ++PV+ Y + + D + Sbjct: 373 RATELALTLSILQAGLTADEGVELLNSGEYTRVGFEKKMPVYITYFTMATDIDGKLSTFK 432 Query: 408 DIYGLDNVHVGIIPLP 423 D+YG D+ P Sbjct: 433 DLYGRDDAVKAAFDAP 448 >gi|332880541|ref|ZP_08448215.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681529|gb|EGJ54452.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 508 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 77/341 (22%), Positives = 134/341 (39%), Gaps = 34/341 (9%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR--------------HGLDPSGMVD 158 ++ RL + D +D ESA + F + + P + Sbjct: 166 QIFNRLEQT-DTTQKAPFRRLYDIETESADQEFVHKALSLLKDGNFTDFFRDIQPDNPLY 224 Query: 159 SS-TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG-LR 216 T + R+ VN+ R + +YV VN+ AA+L AV+ K L Sbjct: 225 RQLTDHYLQTQNPETRRKAIVNIERSRWRTPFAAHDKYVWVNLAAATLYAVDENKPEYLD 284 Query: 217 STVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 + +G +TP+L SRI R+ NPYW IP SI++K++ D Y N + ++ Sbjct: 285 MKICIGSPKNKTPMLQSRIERVDMNPYWNIPYSIVKKEIAPRHAGDEAYFSRNRYRIFNK 344 Query: 277 -KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 G+E+ V + + RQD G+ N++ F + + Y+HDT F Sbjct: 345 ETGEELPPAAVTSDMLTSGRYRVRQDNGEGNSLGRLIFRFPNNFSIYLHDTNNRQAFKRT 404 Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK-TRKTTPVKLATE--------- 385 R + GC+R+ ++L V+LL + + E + + V + + Sbjct: 405 NRAISHGCIRIEKPLELAVFLLNSPEEKTVNKLREAIGLPPLNSSVPIEKKEGEQLKVGI 464 Query: 386 ------VPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 +PV Y + + D + D YG D + + + Sbjct: 465 QRFDPSIPVVIDYYTLYPKPDGGWEESPDPYGYDEILLKKL 505 >gi|255533072|ref|YP_003093444.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter heparinus DSM 2366] gi|255346056|gb|ACU05382.1| ErfK/YbiS/YcfS/YnhG family protein [Pedobacter heparinus DSM 2366] Length = 512 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 80/296 (27%), Positives = 125/296 (42%), Gaps = 51/296 (17%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG----------- 222 + + VN+ R++ L +G +V VNIP +L V VG Sbjct: 215 KTVMVNMERLRWKLP-DLGEEHVEVNIPDFTLTWFSGQDTLSHMKVCVGGAREKDYAEKI 273 Query: 223 -----------RVD-RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 + +TPIL+S++N I NP W IP SI + ++ +DP YL +NN Sbjct: 274 KLYLKSGNLDDKPKNHETPILYSKLNSIQVNPIWNIPVSIARSEIYWQAIRDPYYLSNNN 333 Query: 271 IHMIDEKGKEVFVEEVDWNSP--EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPE 328 I + + + + WN E F F+Q G+ NA+ K F + ++ Y+HDT Sbjct: 334 IKVYYKGQLVTDPDTIQWNKYPREKLPFQFKQGSGEGNALGKFKFIFDNGSSIYLHDTNN 393 Query: 329 PILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL------ 382 F R + GCVRV ++ L+KD + + +E + TT ++L Sbjct: 394 KSAFARNNRAISHGCVRVEKPLEFAEMLVKDKYQYDQLRMEVNLPPVDTTKMELYRKKLA 453 Query: 383 ------------------ATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 VP+ YI+AWS ++ IQFR D+YGLD + Sbjct: 454 KKADTLNIFQLKPKWFGTKKPVPLIINYITAWS-QNGTIQFRPDVYGLDETLYAAM 508 >gi|145641085|ref|ZP_01796666.1| hypothetical protein CGSHiR3021_08446 [Haemophilus influenzae R3021] gi|145274246|gb|EDK14111.1| hypothetical protein CGSHiR3021_08446 [Haemophilus influenzae 22.4-21] Length = 288 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 67/220 (30%), Positives = 119/220 (54%), Gaps = 6/220 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 63 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMY 119 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 120 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 179 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVR+ Sbjct: 180 NKFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRIEKSDQ 238 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV 391 L LLK+ W+ V+ ++KTT + ++ PV ++ Sbjct: 239 LASILLKEA-GWTETRKNTVLASKKTTSAPIRSDNPVFYI 277 >gi|262040976|ref|ZP_06014198.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041670|gb|EEW42719.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 466 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 5/185 (2%) Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE--VFVEEVDWNS 290 +N ++ NP W +P ++ +KD++ +R +P YL+ + ++ + + VDW++ Sbjct: 265 GALNNVVVNPPWNVPPTLARKDILPKVRNNPGYLEQHGYTVMRGWNSKETIDPYRVDWST 324 Query: 291 PEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 N FR Q PG N++ K S + Y+HDTP LF VR +SGCVRV Sbjct: 325 ITENNLPFRFQQAPGARNSLGRYKFNMPSSDAIYLHDTPNHNLFQKDVRALSSGCVRVNK 384 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 +L LL+D W+ I + +K T V + +PV+ Y++A+ D Q+R D Sbjct: 385 ASELANMLLQDA-GWNDTRISDALKQGDTRYVNIRQNIPVNLYYLTAFVDADGRTQYRTD 443 Query: 409 IYGLD 413 IY D Sbjct: 444 IYNYD 448 >gi|262361436|gb|ACY58157.1| hypothetical protein YPD4_1249 [Yersinia pestis D106004] Length = 205 Score = 260 bits (664), Expect = 4e-67, Method: Composition-based stats. Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 6/190 (3%) Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE---VFVEEVD 287 + S +N ++ NP W +P S++++D++ R D Y + N ++ + + +D Sbjct: 1 MSSALNNVVVNPPWNVPTSLVRQDIVPKARNDAGYFQRNGYTVLSGWSNDAEVINPSMID 60 Query: 288 WNSPEPPNFIFR--QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 W+ P NF +R Q PG N++ K S + Y+HDTP LF +R +SGCVR Sbjct: 61 WSIISPNNFPYRLRQAPGANNSLGRFKFNMPSSDAIYLHDTPNHGLFQKDIRALSSGCVR 120 Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 V DL LL+D W+ + VK TT V + VPV Y++AW +D QF Sbjct: 121 VNKASDLANMLLQDA-GWNDARVSSKVKQGDTTYVNIRQRVPVQLYYLTAWVAEDGKPQF 179 Query: 406 RDDIYGLDNV 415 R DIY D + Sbjct: 180 RTDIYNYDKM 189 >gi|330996788|ref|ZP_08320660.1| conserved domain protein [Paraprevotella xylaniphila YIT 11841] gi|329572510|gb|EGG54161.1| conserved domain protein [Paraprevotella xylaniphila YIT 11841] Length = 508 Score = 259 bits (663), Expect = 6e-67, Method: Composition-based stats. Identities = 66/270 (24%), Positives = 116/270 (42%), Gaps = 19/270 (7%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG-LRSTVIVGRVDRQ 227 + R + + +N+ R + + +YV VN+ AA L AV+ K L + +G + Sbjct: 237 PETRRKAI-INIERSRWRTPRAAHDKYVWVNLAAAKLYAVDEKKPEYLDMKICIGSPKSK 295 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE-KGKEVFVEEV 286 TP+L SRI R+ NPYW IP SI++K++ + Y N + + G+E+ V Sbjct: 296 TPMLQSRIERVDMNPYWNIPYSIVKKEIAPRHAGNEAYFSRNRYRIFSKETGEELPPAAV 355 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + RQD G+ N++ F + + Y+HDT F R + GC+R+ Sbjct: 356 TADMLTSGRYRVRQDNGEGNSLGRLIFRFPNNFSIYLHDTNNKQAFKRTNRAISHGCIRI 415 Query: 347 RNIIDLDVWLLKDTPTWSRYHIEEVV-------------KTRKTTPV---KLATEVPVHF 390 ++L V+LL + + E + K + V + +PV Sbjct: 416 EKPLELAVFLLDTPEEKTVNRLREAIGLPPLNSSIPIEKKEGEPLKVGIQRFDPSIPVVI 475 Query: 391 VYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 Y + + D + D YG D + + + Sbjct: 476 DYYTLYPKPDGGWEESPDPYGYDEILLKKL 505 >gi|149185534|ref|ZP_01863850.1| hypothetical protein ED21_20954 [Erythrobacter sp. SD-21] gi|148830754|gb|EDL49189.1| hypothetical protein ED21_20954 [Erythrobacter sp. SD-21] Length = 475 Score = 255 bits (653), Expect = 7e-66, Method: Composition-based stats. Identities = 57/265 (21%), Positives = 116/265 (43%), Gaps = 25/265 (9%) Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR-QTP 229 RI+ ++ N+ R + L Q +G +Y++ N+P L NG++ IVG+ R TP Sbjct: 207 ARIKLIRANMDRWR-WLPQDLGRQYLVTNVPEYMLRLTVNGRIIKSYRTIVGKPGRTATP 265 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMM-ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 L + ++FNP W +P+SI+ + + + +P + ++ + Sbjct: 266 QLAEMVEAVIFNPTWTVPQSIVVGEGLGNKVLNNPGWARNAGYKATKGANGWI------- 318 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 Q PG N++ K++ + + ++HDTP LFN R + GC+RV+ Sbjct: 319 --------TVVQQPGPTNSLGLMKLDMPNEHAIFLHDTPSRHLFNQDARALSHGCIRVKG 370 Query: 349 IIDLDVW--LLKDTPTWS-----RYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 +L + +L + + + + E+ + + T ++ + PV+ Y + + + Sbjct: 371 ARELAMTMSMLGNASNRADIPAIQEEVSEITMSGEYTRYEMKKQWPVYITYFTMATDVNG 430 Query: 402 IIQFRDDIYGLDNVHVGIIPLPEDH 426 ++ DIY D + + P Sbjct: 431 EMKTFRDIYDRDKPVLAALDAPRQE 455 >gi|190149392|ref|YP_001967917.1| hypothetical protein APP7_0123 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914523|gb|ACE60775.1| Uncharacterized protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 213 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 64/198 (32%), Positives = 105/198 (53%), Gaps = 5/198 (2%) Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 IVGR DR+TP+++S+++ ++ NP W IP +I+ KD++ L ++P + + D KG Sbjct: 2 IVGRDDRRTPVMYSKLSNVVVNPPWNIPPTILNKDIVPKLAKNPGFADAAGYEIFDGKGN 61 Query: 280 EVFVEEVDWNSPEPPN---FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 ++ V+W + RQ G +A+ K S + Y+HDTP LF Sbjct: 62 KINPRSVNWAQYVNSKNLPYRIRQKAGDDSALGRFKFNMPSSDAIYLHDTPNRGLFGKTD 121 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R +SGCVRV DL LLK+ WS ++V+ ++KTT + ++ PV+ Y++AW Sbjct: 122 RALSSGCVRVERSDDLASILLKEA-GWSMDKKQKVLASQKTTSANIRSDNPVYLYYVTAW 180 Query: 397 SPKDSIIQFRDDIYGLDN 414 ++ + DIY D Sbjct: 181 V-ENGKVYTLPDIYKFDT 197 >gi|299140698|ref|ZP_07033836.1| periplasmic protein [Prevotella oris C735] gi|298577664|gb|EFI49532.1| periplasmic protein [Prevotella oris C735] Length = 472 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 72/277 (25%), Positives = 125/277 (45%), Gaps = 33/277 (11%) Query: 175 QLQVNLMRIKKLLEQKMG--LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++ N+ R + + G +YVLVNIP+ L AV NG+ L + G + +TP+L Sbjct: 192 RILCNMERCRWRYYDEPGKHEKYVLVNIPSFHLRAV-NGREVLEMKIGCGTTETKTPLLT 250 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK-GKEVFVEEVDWNSP 291 SRI R+ NP WVIPRSI +K++ D QY + + D K G++V + + + Sbjct: 251 SRIMRMDINPQWVIPRSITEKNIANHF-GDRQYFDSHRYFVRDRKTGQKVPFDRITQDMF 309 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 +++ Q G N++ F + + ++HDT +F+ R + GC+RV D Sbjct: 310 HSKDYLVIQKGGIGNSLGRIIFRFNNSFSVFLHDTNRHNVFSQENRGVSHGCIRVERPFD 369 Query: 352 LDVWLLKDTPT--------------------WSRYHIEEVVKTRKTT--------PVKLA 383 L V+LLKD + + K + T +K+ Sbjct: 370 LAVFLLKDKNESLIRKLHYSMTAEIGGESTVLPEEEKKMIKKQKPDTLQRSMLISSLKVE 429 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 ++P+ Y + + + +Q+ D+YG D V ++ Sbjct: 430 PQIPIFITYFTIYPDVNGKLQYFSDVYGYDKVIFDVL 466 >gi|326388316|ref|ZP_08209912.1| hypothetical protein Y88_3197 [Novosphingobium nitrogenifigens DSM 19370] gi|326207048|gb|EGD57869.1| hypothetical protein Y88_3197 [Novosphingobium nitrogenifigens DSM 19370] Length = 386 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 67/245 (27%), Positives = 110/245 (44%), Gaps = 23/245 (9%) Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 R L N+ R + L Q +G YVLVN A + +G+ V+VG+ TP Sbjct: 152 ARRATLATNMDRWR-WLPQSLGADYVLVNAAAFEVRLWRHGQQVGTWPVVVGKTKSPTPT 210 Query: 231 LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNS 290 ++++ + FNP+W IP +I+++ + ++R+ P + Sbjct: 211 FSAQVSGVTFNPWWDIPPAIVRESIGGMMRRHPALARQRGYIHTGAS------------- 257 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 +RQ PG NA+ K+ + N Y+HDTPE LF R + GC+RV + I Sbjct: 258 -------YRQKPGPANALGQMKLVMPNPFNVYLHDTPEKKLFARDTRAFSHGCIRVSDAI 310 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIY 410 L++D S ++ ++ T +TT V L +PV+ Y +A + D + DIY Sbjct: 311 GFATTLVQDVK--SADEVKAIIATGRTTTVDLPMHLPVYVTYFTATTRSDGTLAILPDIY 368 Query: 411 GLDNV 415 D Sbjct: 369 KRDGT 373 >gi|296283068|ref|ZP_06861066.1| hypothetical protein CbatJ_05580 [Citromicrobium bathyomarinum JL354] Length = 468 Score = 253 bits (648), Expect = 3e-65, Method: Composition-based stats. Identities = 57/261 (21%), Positives = 105/261 (40%), Gaps = 18/261 (6%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR- 226 P R + +Q N+ R + L + +G +Y++ N+P L N K+ IVG+ R Sbjct: 203 PGSKRYKLIQANMDRWR-WLPRDLGHQYLITNVPEYQLRLTVNDKIMRTYRTIVGKPGRT 261 Query: 227 QTPILHSRINRIMFNPYWVIPRSIIQKDMMA-LLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 TP L + ++ NP W +P+SI++ + + + +P + Sbjct: 262 ATPQLAESVEGVILNPNWTVPQSIVKGEGLGERVLGNPSWAASKGYKATRG--------- 312 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVR 345 Q PG NA+ K++ +R+ + HDTP LF+ R + GC+R Sbjct: 313 ------ANGYISVVQGPGPGNALGRMKLDMPNRHAIFFHDTPSRGLFSQADRALSHGCIR 366 Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 +L + L + E + + + T V+ +++P + Y + + D + Sbjct: 367 TERATELALTLAILQAGLTADEGVEKLASGEYTRVEFNSKMPAYITYFTMGTTIDGEMAT 426 Query: 406 RDDIYGLDNVHVGIIPLPEDH 426 DIY D + P Sbjct: 427 FKDIYDRDAPVLAAFEAPRKA 447 >gi|145629244|ref|ZP_01785043.1| hypothetical protein CGSHi22121_10590 [Haemophilus influenzae 22.1-21] gi|144978747|gb|EDJ88470.1| hypothetical protein CGSHi22121_10590 [Haemophilus influenzae 22.1-21] Length = 459 Score = 253 bits (647), Expect = 4e-65, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 110/206 (53%), Gaps = 6/206 (2%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++L +N R++ + + G + VNIP+ L+ +G + L S VIVG R+TP+++ Sbjct: 234 AQKLAMNAQRLRVIPDFHNG---IFVNIPSYKLQYYRDGDLILESRVIVGTDSRRTPVMY 290 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP- 291 S+++ ++ NP W P +I +D++ ++ DP Y+ ++N ++D +G V +DW S Sbjct: 291 SKLSNVVVNPPWNAPIRLINEDLLPKMKADPNYITEHNYSILDNQGNVVDPASIDWESIG 350 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + RQ G +A+ + K S + Y+HDTP LFN R +SGCVRV Sbjct: 351 NKFPYRVRQAAGD-SALGNYKFNMPSSDAIYLHDTPNRGLFNRKNRALSSGCVRVEKSDQ 409 Query: 352 LDVWLLKDTPTWSRYHIEEVVKTRKT 377 L LLK+ W+ V+ ++K Sbjct: 410 LASILLKEA-GWTETRKNTVLASKKP 434 >gi|281425838|ref|ZP_06256751.1| putative cell wall degradation protein [Prevotella oris F0302] gi|281400099|gb|EFB30930.1| putative cell wall degradation protein [Prevotella oris F0302] Length = 472 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 71/277 (25%), Positives = 124/277 (44%), Gaps = 33/277 (11%) Query: 175 QLQVNLMR--IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++ N+ R + E +YVLVNIP+ L AV NG+ L + G + +TP+L Sbjct: 192 RILCNMERCRWRYYDEPSKHEKYVLVNIPSFHLRAV-NGREVLEMKIGCGTTETKTPLLT 250 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK-GKEVFVEEVDWNSP 291 SRI R+ NP WVIPRSI +K++ D QY + + D K G++V + + + Sbjct: 251 SRIMRMDINPQWVIPRSITEKNIANHF-GDRQYFDSHRYFVRDRKTGQKVPFDRITQDMF 309 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 +++ Q G N++ F + + ++HDT +F+ R + GC+RV + Sbjct: 310 HSKDYLVIQKGGIGNSLGRIIFRFNNSFSVFLHDTNRHNVFSQENRRVSHGCIRVERPFE 369 Query: 352 LDVWLLKDTPT--------------------WSRYHIEEVVKTRKTT--------PVKLA 383 L V+LLKD + + K + T +K+ Sbjct: 370 LAVFLLKDKNESLIRKLHYSMTAEIGGESTVLPEEEKKMIKKQKPDTLQRSMLISSLKVE 429 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 ++P+ Y + + + +Q+ D+YG D V ++ Sbjct: 430 PQIPIFITYFTIYPDVNGKLQYFSDVYGYDKVIFDVL 466 >gi|218461005|ref|ZP_03501096.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli Kim 5] Length = 245 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 92/212 (43%), Positives = 136/212 (64%), Gaps = 4/212 (1%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 S LD ++N +D+FD A R I S+ PI+ +++A ++AI YQ I + Sbjct: 35 QSALDGLLNAPRRGNWDDQFDAKAASRTATAIVSNTPILGPQSVASAQQAIMQYQQIAAA 94 Query: 92 GGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 GGWPE+ L LG S +VQ LR+RL I+GDL GLS AFD+YV+ AVK FQ RH Sbjct: 95 GGWPEVNPGDQRLQLGVSHPAVQALRQRLAITGDLPREAGLSSAFDSYVDGAVKRFQARH 154 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL G++ TL+AMN+P D+R++QL N++R++ + +G R+++VNIPAA +EAVE Sbjct: 155 GLPADGVLGEFTLKAMNIPADVRLQQLNTNIVRLQTF-PEDLGRRHLMVNIPAAYVEAVE 213 Query: 210 NGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 +G V R T +VGR+ R T +++S+I ++ N Sbjct: 214 DGSVATRHTAVVGRLSRPTHLVNSKIYEVILN 245 >gi|149275869|ref|ZP_01882014.1| hypothetical protein PBAL39_21400 [Pedobacter sp. BAL39] gi|149233297|gb|EDM38671.1| hypothetical protein PBAL39_21400 [Pedobacter sp. BAL39] Length = 532 Score = 249 bits (637), Expect = 6e-64, Method: Composition-based stats. Identities = 80/308 (25%), Positives = 127/308 (41%), Gaps = 51/308 (16%) Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV 221 L+A + R + +N+ R++ L MG YV VNIP SL V V Sbjct: 223 LKAGGLGSSASARTILINMERLRWKLP-DMGNEYVEVNIPDFSLTWFNKQDTVSHMKVCV 281 Query: 222 G----------------------RVD-RQTPILHSRINRIMFNPYWVIPRSIIQKDMMAL 258 G + +TPIL+S++N I NP W IP SI + ++ + Sbjct: 282 GGAREANYKEKIATYLKTKSLDDKPKNHETPILYSKLNSIQVNPIWNIPVSIARSEIYWM 341 Query: 259 LRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSP--EPPNFIFRQDPGKINAMASTKIEFY 316 R+DP YL +NNI++ + + + WN E F F+Q G NA+ K F Sbjct: 342 ARKDPFYLSNNNINVYYKGKLVNDPDTIQWNKYPREKLPFQFKQGSGGGNALGKFKFIFD 401 Query: 317 SRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK 376 + ++ Y+HDT F R + GCVRV ++ L+ + + +E + Sbjct: 402 NGSSIYLHDTNNKTAFGRANRAISHGCVRVERPLEFAEKLVGSKYQYDQLRMEVNLPPLD 461 Query: 377 TTPVKL------------------------ATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 TT + + VP+ Y++AWS ++ I+FR D+Y L Sbjct: 462 TTKMNVYRKKLAQKADTLNAFQLKPKWFGTKKPVPLIINYVTAWS-QNGKIEFRPDVYRL 520 Query: 413 DNVHVGII 420 D + Sbjct: 521 DETLWTAM 528 >gi|317502835|ref|ZP_07960937.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315666050|gb|EFV05615.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 509 Score = 248 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 74/294 (25%), Positives = 125/294 (42%), Gaps = 34/294 (11%) Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQ--KMGLRYVLVNIPAASLEAVENGKVGLRS 217 +L A+ + R R + N+ R + + + +YVLVNIP+ L V V Sbjct: 215 QSLLAITRDKNER-RTILCNMDRCRWRYKDTPDLHEKYVLVNIPSFHLRMVNRDDVR-EM 272 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI-DE 276 + G D +TP+L SRI R+ NP W++PRSII+K ++ D Y ++ + + Sbjct: 273 KIGCGSKDTKTPLLTSRIIRMDVNPQWIVPRSIIKKSIVNHC-GDRHYFDSHHFFVRHRK 331 Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 GK++ +++ +++ Q G N++ F + + ++HDT + +F+ Sbjct: 332 TGKKIPFDQITREMLLSKDYLVIQTGGLGNSLGRIIFRFPNGFSVFLHDTNQQNIFSQTD 391 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI-----------------EEVVKTRKTTP 379 R + GCVRV DL V+LLKD + EE KT P Sbjct: 392 RDVSHGCVRVERPFDLAVFLLKDKEASIIRKLHYSMTAKIGEEGVNSSEEEHKNMEKTRP 451 Query: 380 VKLAT-----------EVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 L +VP++ Y + + +Q D+YG D V + Sbjct: 452 DTLKKSLILRSLSVEPQVPIYLTYFTIYPDGKGKLQHFADVYGFDKVIFKSLRN 505 >gi|300727069|ref|ZP_07060488.1| putative cell wall degradation protein [Prevotella bryantii B14] gi|299775613|gb|EFI72204.1| putative cell wall degradation protein [Prevotella bryantii B14] Length = 507 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 75/266 (28%), Positives = 127/266 (47%), Gaps = 14/266 (5%) Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQK--MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 N+ + R R L VN+ R + L + +YV+VNIPA SL AV+ KV + V+VG Sbjct: 240 NITAEQR-RLLLVNMERSRWRLSDYPYLHTKYVIVNIPALSLFAVDGDKVQ-QMKVVVGA 297 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK-GKEVF 282 + +TP+LHS R+ NP W+IP SI+ K +A + Y ++ + + GK V Sbjct: 298 LKTKTPLLHSNFTRMDINPQWLIPMSIL-KSSVARFAGNTSYFNRHHYFIRNRSTGKVVP 356 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 +V N++ Q+ G N++ F + + Y+HDT +F R + G Sbjct: 357 TNQVTSAMILSGNYVVVQEGGPYNSLGRIIFRFNNDYSIYLHDTNSRGVFQKEDRCLSHG 416 Query: 343 CVRVRNIIDLDVWLLKDTP--------TWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 CVRV N DL V++L + + + + K + +K+ ++PV VY + Sbjct: 417 CVRVENPFDLAVFMLDNNKSVIGRIKYSMTVDSVTGPDKNKLIHSMKVMQDIPVFIVYYT 476 Query: 395 AWSPKDSIIQFRDDIYGLDNVHVGII 420 + + ++ D+YG D + + Sbjct: 477 LYPNRQGELEQYQDVYGYDQIIYKHL 502 >gi|288801197|ref|ZP_06406652.1| peptidoglycan-binding domain 1 [Prevotella sp. oral taxon 299 str. F0039] gi|288331808|gb|EFC70291.1| peptidoglycan-binding domain 1 [Prevotella sp. oral taxon 299 str. F0039] Length = 460 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 65/270 (24%), Positives = 121/270 (44%), Gaps = 26/270 (9%) Query: 175 QLQVNLMRIKKLLEQ--KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++ VN+ R + ++ +YVLVN+P+ L+AV+ V V G + +TP+L+ Sbjct: 188 KVLVNMERCRWRHNDYPELHKKYVLVNVPSFYLQAVDEDSV-FSMRVACGALSTKTPLLN 246 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-EKGKEVFVEEVDWNSP 291 S I R+ NP W+IP SI++K +++ L + Y ++ + GKE+ + EV + Sbjct: 247 STIERMDINPQWIIPLSIVKKQIISQL-GNRHYFDSHSYFIRHVATGKEIDISEVTPDML 305 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + Q G+ NA+ F + + Y+HDT F+ R + GC+RV ++ Sbjct: 306 LSGAYKVVQRGGEGNALGRIVFRFPNNFSVYLHDTSSREAFSRFDRGVSHGCIRVEKPLE 365 Query: 352 LDVWLLKDTPTWSRYHI---------------------EEVVKTRKTTPVKLATEVPVHF 390 L ++LL+D + ++ + R L VP+ Sbjct: 366 LAIFLLQDKEEALIDKLIYSTTVDMKTDSRNNEKDCLENKIDRKRLINSKSLKPSVPLFI 425 Query: 391 VYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 Y + + + +++ D+YG D V + Sbjct: 426 TYYTLYPDEKGVMRDYPDVYGYDKVIARYL 455 >gi|260912258|ref|ZP_05918809.1| peptidoglycan binding protein [Prevotella sp. oral taxon 472 str. F0295] gi|260633559|gb|EEX51698.1| peptidoglycan binding protein [Prevotella sp. oral taxon 472 str. F0295] Length = 549 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 73/276 (26%), Positives = 123/276 (44%), Gaps = 24/276 (8%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 R+R L N+ R + + +YVLVN+P+ L+A+E G L + G +D Sbjct: 274 SAADRVRLL-CNIERSRWRQDDYPQNHRKYVLVNVPSFHLDAIE-GDSVLTMRMACGTLD 331 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK-GKEVFVE 284 +TP+L+S I R+ NP W+IPRSII+K+++A + Y + +++ G+ V Sbjct: 332 TKTPLLNSHIMRMDVNPQWIIPRSIIKKEVIAHA-GNTDYFDRHRYFILNRSTGRRVDPC 390 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 V P++ Q+ G+ N++ F + + ++HDT F R + GC+ Sbjct: 391 SVSAGMLLTPDYFVVQEGGEGNSLGRIVFRFNNNFSIFIHDTSSKWAFERGNRGVSHGCI 450 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP------------------VKLATEV 386 RV+ +L V+LLKD I ++ + P VK+ V Sbjct: 451 RVQKPFELAVFLLKDKDKSLIDKITYSMQADLSKPKDGEEPKPRVDYRRLVNSVKVNPNV 510 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 P+ Y + + IQ D+YG D V + Sbjct: 511 PLFITYYTLYPDMAGRIQTYADVYGYDQVLYRYLRN 546 >gi|312886219|ref|ZP_07745834.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] gi|311301326|gb|EFQ78380.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] Length = 542 Score = 246 bits (629), Expect = 5e-63, Method: Composition-based stats. Identities = 78/298 (26%), Positives = 127/298 (42%), Gaps = 48/298 (16%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD---- 225 L++R +++N+ R++ K RY+ VNIPA L+ +EN KV V +G Sbjct: 240 SLQLRTIKLNMERLRWQTPAKDS-RYLWVNIPAFKLQWIENKKVVFDMKVCLGEPKPAGY 298 Query: 226 -------------------RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYL 266 +T IL SRIN I NP W IP SI Q ++ + ++P YL Sbjct: 299 DTMLLRYLKTHSIDDKPVNHETTILCSRINTIQLNPNWNIPSSIAQNEIYYAILRNPAYL 358 Query: 267 KDNNIHMIDEKGKEVFVEEVDWNSPEPPN--FIFRQDPGKINAMASTKIEFYSRNNTYMH 324 +NNI + + + + W + + F+QD ++NA+ K F + Y+H Sbjct: 359 SNNNIRVYYKDKLVTQPDTIRWGRIQRQKIPYKFKQDASELNALGKFKFIFDNEAGIYLH 418 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVWL--------------------LKDTPTWS 364 DTP F + R + GCVRV + + L L LKDT ++ Sbjct: 419 DTPNKKAFGSSWRAVSHGCVRVEDPLKLSEALVNDTNMVDNIRMEVGLKPVNLKDTTKYN 478 Query: 365 RYHIEEVVKTR--KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 + VK K+ + L ++ + Y + W ++ + F D Y +D V + Sbjct: 479 AIQAKRAVKGFELKSKYIGLKPDMQLFIDYYTCWPDENGKLVFYADAYRMDTVLEKAM 536 >gi|284036319|ref|YP_003386249.1| ErfK/YbiS/YcfS/YnhG family protein [Spirosoma linguale DSM 74] gi|283815612|gb|ADB37450.1| ErfK/YbiS/YcfS/YnhG family protein [Spirosoma linguale DSM 74] Length = 403 Score = 245 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 120/245 (48%), Gaps = 9/245 (3%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN-GKVGLRSTVIVGRVDRQT 228 LR+ + +N R + + ++VLVNIPA L + GK L VI G+ D+ T Sbjct: 160 SLRLIRQTLNFYR---YINRFDPDQFVLVNIPAGELNVFDRTGKRLLPMQVISGKPDKMT 216 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 P + + I I+ PYW +P++I +M+ +++D Y+ + N+ ++D K KEV EE+DW Sbjct: 217 PCMVTYIQDIVMYPYWNVPQNIALDEMLPRMKRDLSYIYNQNLQILDAKNKEVDPEEIDW 276 Query: 289 NSPEPPNFIF--RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV-VRFETSGCVR 345 S NF + RQ G N++ K + Y+HDT LF + + + GCVR Sbjct: 277 ESLSETNFPYRVRQASGCENSLGLLKFNLANPLAIYLHDTNSRDLFKSTKDHWRSHGCVR 336 Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 V+ ++L +L T+ + + + +K + + PV Y A + F Sbjct: 337 VQKPVELANLILG-AKTFDADFMNKCLIDQKPKTLP-TKKFPVFITYNIADVDAAGKLHF 394 Query: 406 RDDIY 410 +D+Y Sbjct: 395 YNDVY 399 >gi|315608208|ref|ZP_07883200.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315250177|gb|EFU30174.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 514 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 69/271 (25%), Positives = 124/271 (45%), Gaps = 26/271 (9%) Query: 174 RQLQVNLMRIKKLLEQKMG--LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 ++ N+ R + L+ +YVLVNIP+ L AV +G L V G + +TP+L Sbjct: 242 AKILCNIERCRWRLKDYPQRYKKYVLVNIPSFKLCAV-DGDSVLEMRVGCGTFETKTPLL 300 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-EKGKEVFVEEVDWNS 290 +S+I R+ NP W+IPRSI++K ++ + D Y + + + G+E+ +++ Sbjct: 301 YSQIKRMDINPQWIIPRSIVKKSIIKHV-GDKNYFESRGYLIKNIHTGEEIDLDKASLGM 359 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 E F Q GK N++ F + + Y+HDTP F+ R + GC+RV+ Sbjct: 360 LENREFAVIQRGGKGNSLGRIVFRFDNDFSVYLHDTPSRDFFSREDRGVSHGCIRVQKPF 419 Query: 351 DLDVWLLKDTPTWSRYHIE-------EVVKTRKTTPVKL--------------ATEVPVH 389 +L ++L + I + + K + + +VP+ Sbjct: 420 ELAKFILGNANDELIRKIAYSIQADISIHRDDKNKSLPIDTLNRKLLIRTCYVKPKVPLF 479 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 +Y + + K+ ++ F DD+YG D V + Sbjct: 480 IIYFTIYPDKNGVLTFYDDVYGYDQVIYRQL 510 >gi|307946680|ref|ZP_07662015.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] gi|307770344|gb|EFO29570.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] Length = 429 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 6/289 (2%) Query: 20 LPMGLSLVEKPIHASVLDEIIN-ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 L + + + +++ +N D F + D + + + Sbjct: 142 LRYATHVSSGRVQPNKINKALNIFPDRPKAKDLFHALETTSNFSAFLDSLPLQTASYLRL 201 Query: 79 EKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 + + Y++ + GG+ +P L V L+ERL+ L + ++ Sbjct: 202 QIRLGEYREKAANGGFTSIPKGEVLKPEMIDPRVPTLKERLVQEDFLLAEQHSGSTYNGA 261 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + AVK FQ HGL+ G++ STLEA+NV ++ R+ Q+++N+ R ++ + +G YV Sbjct: 262 LVEAVKNFQSYHGLEVDGIIGKSTLEALNVSINDRLIQMELNMER-RRWMPDNLGDTYVF 320 Query: 198 VNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VN+ +L+ V NGK + VIVG+ TP+ + + NPYW +P SI ++ + Sbjct: 321 VNLADQALKVVRNGKTWHTTPVIVGKPYHATPVFSDVMTYVEVNPYWNVPYSISTREYLP 380 Query: 258 LLRQDPQYL-KDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 L+ + L + + + + KG VF ++ S F PG Sbjct: 381 KLQANANALSEKKHAGISERKGSCVFKRQLV--SLFTAKLPFPAAPGPG 427 >gi|288925831|ref|ZP_06419762.1| putative periplasmic protein [Prevotella buccae D17] gi|288337486|gb|EFC75841.1| putative periplasmic protein [Prevotella buccae D17] Length = 505 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 70/271 (25%), Positives = 125/271 (46%), Gaps = 26/271 (9%) Query: 174 RQLQVNLMRIKKLLEQKMG--LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 ++ N+ R + L+ +YVLVNIP+ L AV +G L V G + +TP+L Sbjct: 233 AKILCNIERCRWRLKDYPQRYKKYVLVNIPSFKLCAV-DGDSVLEMRVGCGTFETKTPLL 291 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-EKGKEVFVEEVDWNS 290 +S+I R+ NP W+IPRSI++K ++ + D Y + + + G+E+ +++ Sbjct: 292 YSQIKRMDINPQWIIPRSIVKKSIIKHV-GDKNYFESRGYLIKNIHTGEEIDLDKASLGM 350 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 E F Q GK N++ F + + Y+HDTP F+ R + GC+RV+ Sbjct: 351 LENREFAVIQRGGKGNSLGRIVFRFDNDFSVYLHDTPSRDFFSREDRGVSHGCIRVQKPF 410 Query: 351 DLDVWLLKDTPTWSRYHIE-------EVVKTRKTTPVKLAT--------------EVPVH 389 +L ++L + I + + K + + T +VP+ Sbjct: 411 ELAKFILGNANDELIRKIAYSIQADISIHRDDKNKSLPIDTLNRKLLIRTCYVMPKVPLF 470 Query: 390 FVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 +Y + + K+ ++ F DD+YG D V + Sbjct: 471 IIYFTIYPDKNGVLTFYDDVYGYDQVIYRQL 501 >gi|255036894|ref|YP_003087515.1| ErfK/YbiS/YcfS/YnhG family protein [Dyadobacter fermentans DSM 18053] gi|254949650|gb|ACT94350.1| ErfK/YbiS/YcfS/YnhG family protein [Dyadobacter fermentans DSM 18053] Length = 398 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 4/238 (1%) Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN-GKVGLRSTVIVGRVDRQTPILHSRIN 236 +N R + + R+VLVNI A L A+++ G+ L +VG+ D TP + + Sbjct: 157 LNAYRW-IHRQIQGSPRFVLVNIRGAYLTAMDSAGQNVLTMRTVVGKRDTPTPTIDTYAT 215 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF 296 I+ +PYW +P+SI K++ DP+YL N I +I + G+ + +E+DW F Sbjct: 216 SIVTHPYWNVPKSIAIKEIFPKAAADPEYLSRNRIQVIGKDGQAIDPQELDWGDLTAEKF 275 Query: 297 I--FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 FRQ+ G+ N++ K+E + Y+HDT LF + R+ + GCVRV+ DL Sbjct: 276 PYRFRQETGEDNSLGLLKVEIKNPLAIYLHDTNARYLFKSGQRWRSHGCVRVQYPTDLAN 335 Query: 355 WLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 ++ S + E + KL +PV +Y+ A + + D+Y Sbjct: 336 YMAGSKLLDSDFMTEPDSVSHPPKWHKLQVRIPVFLLYLPADCNPKGDLMYFPDVYKR 393 >gi|284038422|ref|YP_003388352.1| ErfK/YbiS/YcfS/YnhG family protein [Spirosoma linguale DSM 74] gi|283817715|gb|ADB39553.1| ErfK/YbiS/YcfS/YnhG family protein [Spirosoma linguale DSM 74] Length = 378 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 77/255 (30%), Positives = 121/255 (47%), Gaps = 14/255 (5%) Query: 167 VPVDLRIRQLQ--VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGR 223 + L I Q+Q +N R L + + ++VNIP+A+L ++ GK L S V+VG+ Sbjct: 122 MSDSLTIEQVQETLNTYR---WLNRFRNSKRIVVNIPSATLRVIDRQGKTLLNSRVVVGK 178 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ-YLKDNNIHMIDEKGKEVF 282 D TP+ + I ++ PYW +PRSI+ K+M+ ++++P L N+ +ID KG+ V Sbjct: 179 ADTPTPLFTAFIPSLVMYPYWNVPRSIMVKEMLPRIQKNPALVLSFLNLDVIDAKGQVVD 238 Query: 283 VEEVDWNSPEPP------NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 + V+W+ + RQ G NA+ K S + Y+HDT F + Sbjct: 239 PKTVNWSVSASAVYNGSFPYRLRQATGCANALGVLKFNVNSPYDVYLHDTNARHAFASEN 298 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R + GC+RV +L LL T +S ++ K V+L VPV Y Sbjct: 299 RQLSHGCIRVEKPAELANLLLGYT-RFSDDYLTSCPKNASPKTVQLPVSVPVITTYNVLD 357 Query: 397 SPKDSIIQFRDDIYG 411 IQ D+YG Sbjct: 358 IDAAGAIQVYPDVYG 372 >gi|87198452|ref|YP_495709.1| hypothetical protein Saro_0427 [Novosphingobium aromaticivorans DSM 12444] gi|87134133|gb|ABD24875.1| conserved hypothetical protein [Novosphingobium aromaticivorans DSM 12444] Length = 499 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 56/256 (21%), Positives = 105/256 (41%), Gaps = 18/256 (7%) Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV-DRQT 228 + ++ N+ R + L + +G +Y+L N+P L K+ VIVG+ T Sbjct: 239 QKQAALIRANMDRWR-WLARDLGTQYLLANVPEQVLRLTVRNKIISTYKVIVGKPGKTAT 297 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMM-ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 P L + ++FNP W +P+SI+ + + A L +P+ + + ++ Sbjct: 298 PQLAETVEGVIFNPTWTVPQSIVVGEGLGARLVNNPRQAEREGYKVTKAGDGTIY----- 352 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 Q PG N++ K++ + + ++HDTP LFN R + GCVRV Sbjct: 353 ----------VVQQPGDNNSLGRMKLDMPNEHAIFLHDTPNRNLFNLPARALSHGCVRVE 402 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 +L + + + ++ T V + PV+ Y + + +++ Sbjct: 403 RATELAMTMAILGAGMTPDDAVAAHTSKVYTKVPMTKTFPVYLTYFTVARDVNGMLRSFP 462 Query: 408 DIYGLDNVHVGIIPLP 423 DIY D + P Sbjct: 463 DIYNRDAPVLATFAQP 478 >gi|288928347|ref|ZP_06422194.1| lipoprotein [Prevotella sp. oral taxon 317 str. F0108] gi|288331181|gb|EFC69765.1| lipoprotein [Prevotella sp. oral taxon 317 str. F0108] Length = 460 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 24/275 (8%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 RIR L N+ R + +YVLVN+P+ L+A+E G L + G +D Sbjct: 185 SETDRIRLL-CNVERSRWRQTDYPQNHRKYVLVNVPSYHLDAIE-GDSVLTMRMACGTLD 242 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE-KGKEVFVE 284 +TP+L+S I R+ NP W+IPRSII+K+++ +P Y + + +++ G+ V Sbjct: 243 TKTPLLNSHIMRMDVNPQWIIPRSIIKKEVVGHA-GNPDYFERHRYFILNRPSGRRVDPA 301 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 V P++ Q+ G+ N++ F + + ++HDT F+ R + GC+ Sbjct: 302 NVSAGMLLNPDYFVIQEGGEGNSLGRVVFRFNNNFSIFIHDTSSKWAFDRGSRSVSHGCI 361 Query: 345 RVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTP------------------VKLATEV 386 RV+ +L V+LL I ++ + P VK+ V Sbjct: 362 RVQKPFELAVFLLGKKDKTLIDKINYSMQADLSKPKEGEEKRTRVDYRRLVNSVKVNPNV 421 Query: 387 PVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 P+ Y + + + D+YG D V + Sbjct: 422 PLFITYYTLYPDVKGKMHTYADVYGYDKVLYRYLR 456 >gi|326386118|ref|ZP_08207742.1| hypothetical protein Y88_2010 [Novosphingobium nitrogenifigens DSM 19370] gi|326209343|gb|EGD60136.1| hypothetical protein Y88_2010 [Novosphingobium nitrogenifigens DSM 19370] Length = 505 Score = 242 bits (618), Expect = 8e-62, Method: Composition-based stats. Identities = 60/255 (23%), Positives = 105/255 (41%), Gaps = 18/255 (7%) Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV-DRQTP 229 +I ++ N+ R + L + +GL+Y+++N+P L N K+ IVGR TP Sbjct: 246 KQIAMIRANMDRWR-WLGRDLGLQYLIINVPEQELRLTVNNKIIRTYKAIVGRPGKTATP 304 Query: 230 ILHSRINRIMFNPYWVIPRSIIQKDMMAL-LRQDPQYLKDNNIHMIDEKGKEVFVEEVDW 288 L ++ ++FNP W +P+SI+ + + L P K + Sbjct: 305 QLAEQVKNVVFNPTWTVPQSIVVGEGLGKDLIAHPAKAKRLGYVATQSADGTI------- 357 Query: 289 NSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 Q PG NA+ K++ + + Y+HDTP LFN R + GC+R Sbjct: 358 --------TVVQQPGNTNALGRVKLDMPNDHAIYIHDTPNRTLFNQPQRALSHGCIRAER 409 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDD 408 +L + + + + K T V +A PV+ Y + + +++ D Sbjct: 410 ATELAMTMAILGADLPPQTAVDYSLSGKYTKVPMAKPFPVYITYFTVARDVNGLMRSFPD 469 Query: 409 IYGLDNVHVGIIPLP 423 +YG D + P Sbjct: 470 LYGRDAKVIASFAQP 484 >gi|148554282|ref|YP_001261864.1| hypothetical protein Swit_1361 [Sphingomonas wittichii RW1] gi|148499472|gb|ABQ67726.1| Uncharacterized protein [Sphingomonas wittichii RW1] Length = 418 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 65/254 (25%), Positives = 99/254 (38%), Gaps = 31/254 (12%) Query: 175 QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR 234 +L+ NL R + + + +G RY+ VNIP L + NG V+VG TP L Sbjct: 191 RLRANLERWR-WMPRDLGDRYIYVNIPGYRLSVINNGIEEASYNVVVGAPRTPTPQLELY 249 Query: 235 INRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP 294 I+ NP W +P SI++ + I V Sbjct: 250 AQSIVANPGWTVPHSIVK----------AGGTRGKGFRWIRNPDGSVSAW---------- 289 Query: 295 NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDV 354 Q PG NA+ KI+ + + Y+HDTP +F R + GC+RV NI +L Sbjct: 290 -----QAPGPTNALGRIKIDMPNPHAIYLHDTPNRAVFARENRALSHGCIRVENIEELAA 344 Query: 355 WLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 L + KT +L VPV+ VY +A + D ++ D YG D Sbjct: 345 MLQGGDGLD-----AALADPGKTKVFQLERSVPVYLVYFTAQADPDGTVRPLGDPYGRDK 399 Query: 415 VHVGIIPLPEDHPI 428 + + + + Sbjct: 400 ALLAKLGAAMEGKL 413 >gi|294674104|ref|YP_003574720.1| lipoprotein [Prevotella ruminicola 23] gi|294472724|gb|ADE82113.1| putative lipoprotein [Prevotella ruminicola 23] Length = 496 Score = 239 bits (611), Expect = 5e-61, Method: Composition-based stats. Identities = 73/293 (24%), Positives = 120/293 (40%), Gaps = 27/293 (9%) Query: 153 PSGMVDSSTLEAMN-VPVDLRIRQLQVNLMRIKKLLEQKMG-LRYVLVNIPAASLEAVEN 210 P + + L M+ + QL VN+ R + +E R +LVNIPA L A++ Sbjct: 196 PDTYIYKALLREMDKTTNADKRHQLAVNMERCRWQIEHPKDVKRQILVNIPAQQLWAIDV 255 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 V L + G V +TP+LHS I+ + NP WVIP++I++ +++ D Y N Sbjct: 256 DSV-LDMRICCGAVPTKTPLLHSAISYMQVNPEWVIPQNIVKTEVV-HHAGDSAYFARNR 313 Query: 271 IHMIDE-KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 +ID+ G + V V N+ Q G N++ + + Y+HDT Sbjct: 314 YSVIDKESGDTLNVASVGANALLSGKLRISQKGGVGNSLGRIVFRSQNDFSIYLHDTNNR 373 Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTT----------- 378 F R + GCVRV+ +L +LL D W+ + + T Sbjct: 374 SAFQRDRRTLSHGCVRVQKPFELASFLLSDVDEWTLESLRISMDIPPVTDRGREWLHKHA 433 Query: 379 ----------PVKLATEVPVHFVYISAWSPKD-SIIQFRDDIYGLDNVHVGII 420 + VP++ +Y + + I + D+YG D V + Sbjct: 434 DAPHPYRLISYHAVKPHVPLYILYYTTFPNPKTGAIDYWPDLYGFDKVISKEL 486 >gi|261880240|ref|ZP_06006667.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270333074|gb|EFA43860.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 458 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 70/289 (24%), Positives = 123/289 (42%), Gaps = 33/289 (11%) Query: 165 MNVPVDLRIRQ--LQVNLMRIKKLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVI 220 + P R+++ + VN+ R + ++ +YVLVNIP+ L AV+ KV L + Sbjct: 170 LQSPGLSRMQRNRILVNMERCRWRMQDNPQRHEKYVLVNIPSFHLRAVDGDKV-LTMRIA 228 Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE-KGK 279 G +TP++ S I R+ NP WV+P+SI++K ++ L + Y N + + G+ Sbjct: 229 FGSNKNKTPLIVSAIKRMDVNPQWVMPKSIVRKSVVPQL-GNINYFTQNRYFIRNRQTGE 287 Query: 280 EVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 V V V E ++ Q G+ NAM F + + Y+HDT +F+ VR Sbjct: 288 HVDVSSVSPEMLESGDYFVIQRGGEGNAMGRIVFRFDNNLSIYLHDTSSRTIFDRSVRNV 347 Query: 340 TSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV--------------------------K 373 + GC+RV +L ++L I + + Sbjct: 348 SHGCIRVEKPFELSKFVLAKKDDKLVDRINYSMHADVSPVNMKKEEMTERMMLVADTLDR 407 Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 +R V + VP+ +Y + + I+ D+YG D++ + Sbjct: 408 SRLIGSVNIKPMVPIFILYYTMYPDASGKIETFSDVYGYDSLIYQQLRN 456 >gi|281422421|ref|ZP_06253420.1| putative cell wall degradation protein [Prevotella copri DSM 18205] gi|281403484|gb|EFB34164.1| putative cell wall degradation protein [Prevotella copri DSM 18205] Length = 451 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 71/270 (26%), Positives = 124/270 (45%), Gaps = 13/270 (4%) Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTV 219 L+A + +RI+ L N+ R + +YV+VNIP+ L A+++ + L + Sbjct: 182 LKAGGLGKAMRIKIL-CNMERCRWRQYDNPWQHEKYVVVNIPSFHLLAIDH-QDTLSMRI 239 Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMID-EKG 278 G +TPIL+S I R+ NP W +PRSI+ DM+ + + Y + N ++ + G Sbjct: 240 GCGASKTKTPILNSHIKRMELNPQWFVPRSIVLHDMIHRV-GNHGYFRARNYYVREVATG 298 Query: 279 KEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRF 338 KEV ++ V + + Q GK NA+ F + + ++HDT +F R Sbjct: 299 KEVDLDRVTRSMLISGAYGIAQRGGKGNALGRIIFRFDNNFSVFLHDTNSKGVFGQEDRG 358 Query: 339 ETSGCVRVRNIIDLDVWLLKDTPTWSRYHI-----EEVVKTRK--TTPVKLATEVPVHFV 391 + GC+R+ D V+LL D + I + + +K VK+ +VP+ Sbjct: 359 VSHGCIRIEKPYDFAVFLLADKNEKLKEKIYYSMTADSLANKKLVVNNVKVNPQVPLFIT 418 Query: 392 YISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 Y + + I D+YG D + ++ Sbjct: 419 YYTLYPLAGGRIADYSDVYGFDAIIFDMLR 448 >gi|103486925|ref|YP_616486.1| hypothetical protein Sala_1440 [Sphingopyxis alaskensis RB2256] gi|98977002|gb|ABF53153.1| conserved hypothetical protein [Sphingopyxis alaskensis RB2256] Length = 409 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 97/251 (38%), Gaps = 17/251 (6%) Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 + ++VN+ R + + + +G RYV+ N+P V G V +VG+ TP L+ Sbjct: 142 AQAIRVNMERWR-WMPRDLGERYVVSNVPEYLTRVVHGGTVIATHKAVVGKKSTPTPQLN 200 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPE 292 I+ NP W +PRSII + + A + ++P + + Sbjct: 201 PMATGIIVNPNWTLPRSIINEGIGATIARNPAAARAQGYT----------------WTGS 244 Query: 293 PPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 Q PG NA+ K+E + + Y+HDTP FN R + GC+R + Sbjct: 245 GKTLSVVQKPGPNNALGVMKMEMLNEHAIYLHDTPSKNAFNAAARAFSHGCIRTERALHF 304 Query: 353 DVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 + S E + + KTT PV+ Y + ++ D+Y Sbjct: 305 SGLMAVMFAGRSPEEFGEAIASGKTTRFGFDQPFPVYVAYWTVVPDGKGGVKKLADLYER 364 Query: 413 DNVHVGIIPLP 423 D V P Sbjct: 365 DAPVVASFARP 375 >gi|323345681|ref|ZP_08085904.1| cell wall degradation protein [Prevotella oralis ATCC 33269] gi|323093795|gb|EFZ36373.1| cell wall degradation protein [Prevotella oralis ATCC 33269] Length = 507 Score = 235 bits (601), Expect = 9e-60, Method: Composition-based stats. Identities = 75/277 (27%), Positives = 123/277 (44%), Gaps = 28/277 (10%) Query: 171 LRIRQLQVNLMRIKKLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 RI+ L N+ R + L +YVLVNIP+ L AV+ V L + G ++ +T Sbjct: 231 ERIKML-CNMERCRWRLYDYPWRHRKYVLVNIPSFHLRAVDQDSV-LEMKIGCGSLETKT 288 Query: 229 PILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKG-KEVFVEEVD 287 P+L SRI R+ NP WVIPRSI++K + D Y + ++ + K K + V V Sbjct: 289 PLLTSRIMRMDLNPQWVIPRSIVRKSIANHA-GDSAYFASHRYYVRERKTIKRIPVSLVS 347 Query: 288 WNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 + ++ Q+ G+ NA+ F + + ++H T P +F R + GCVRV Sbjct: 348 RSMLNSSDYFVIQEGGEGNALGRIIFRFNNNFSVFLHYTSAPGVFEQSSRDVSHGCVRVE 407 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVV----------------------KTRKTTPVKLATE 385 +DL V+LLK+ I + K++ +K+ E Sbjct: 408 KPLDLAVFLLKNKDEKIIEKIRYSMTVDLGNQRDKGQRGVEFRPPVDKSKLIGSLKVEPE 467 Query: 386 VPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPL 422 VP+ Y + + + ++ D+YG D V + Sbjct: 468 VPLFITYYTLYPDRYGQLEEFPDVYGYDRVIYNYLGN 504 >gi|197105408|ref|YP_002130785.1| hypothetical protein PHZ_c1945 [Phenylobacterium zucineum HLK1] gi|196478828|gb|ACG78356.1| hypothetical protein PHZ_c1945 [Phenylobacterium zucineum HLK1] Length = 483 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 14/252 (5%) Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 R + N+ R + L + +G R++LVN +A L E+G+ R VIVGR TP + Sbjct: 231 RLILANMDRARG-LPRALGPRFILVNAASAELRVYEDGEEVDRMPVIVGRPSAATPPMAG 289 Query: 234 RINRIMFNPYWVIPRSIIQKDMMAL-LRQDPQYLKDNNIHMIDEKG---KEVFVEEVDWN 289 I F PYW +P +++++ LR+ P +L + + + + E+DW Sbjct: 290 VIRYARFRPYWNLPEGMVREEFAPRVLREGPGFLAAAGFEALSDWSPQARVLDPAEIDWR 349 Query: 290 SPEPP--NFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 + + RQ PG N + + K+ + Y+HDTP+ F R ++GC+R+ Sbjct: 350 AVARGERSLRLRQSPGPGNILGNVKLMLPNHLGIYLHDTPDKASFRRSRRTLSAGCIRLA 409 Query: 348 NIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRD 407 + L LL+ W E V L VPV+ +Y++A + + Sbjct: 410 DADRLTRRLLE----WEE---GERPPEGLNQRVDLPRGVPVYILYLTAERGEGGEVLRHP 462 Query: 408 DIYGLDNVHVGI 419 D+YG D+ + Sbjct: 463 DLYGRDSQVIAA 474 >gi|282877810|ref|ZP_06286623.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] gi|281300126|gb|EFA92482.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] Length = 361 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 70/272 (25%), Positives = 125/272 (45%), Gaps = 32/272 (11%) Query: 174 RQLQVNLMRIKKLLEQKMG--LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPIL 231 R++ NL R + L+ + G +Y L+N+P+ L A ++ K L + +G +D +TP++ Sbjct: 82 RKVICNLERARWRLDDEPGKHEKYALINLPSMHLMARDHDK-TLSMRIGIGALDTKTPLI 140 Query: 232 HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK-GKEVFVEEVDWNS 290 SRI R+ NP WV+PRSII+K ++ + Y + + K GK + V +V + Sbjct: 141 TSRIVRMDVNPQWVMPRSIIEKSVVPQA-GNKDYFDARRYFIRERKTGKRMDVTQVSADM 199 Query: 291 PEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + N+ Q+ GK NAM F ++ Y+HDT +F R + GC+R+ Sbjct: 200 LKSGNYFVIQEGGKGNAMGRIVFRFKNKFAIYLHDTSSKGVFEREDRGVSHGCIRLEKPF 259 Query: 351 DLDVWLLKDTPTWSRYHIEEVV---------------------------KTRKTTPVKLA 383 D V+LL D + I + + + V++ Sbjct: 260 DFAVFLLNDKDEKTIERIRYSMEADIHSTYMDDNPSSDKKPSMETNKLDRAKLIKSVQVK 319 Query: 384 TEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 VP+ Y + + +++++ D+YG D+V Sbjct: 320 PTVPLFITYYTLYPNENNVMTEYPDVYGFDSV 351 >gi|282879885|ref|ZP_06288612.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] gi|281306279|gb|EFA98312.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] Length = 491 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 73/269 (27%), Positives = 119/269 (44%), Gaps = 29/269 (10%) Query: 179 NLMRIKKLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRIN 236 NL R + L+ + +YV+VNIPA L A+++ + +R V VG +TP+L SRI Sbjct: 220 NLERTRWRLKDNLFAQDKYVMVNIPAMELLAIDH-EQVMRMRVGVGTNTTKTPLLSSRIM 278 Query: 237 RIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDE-KGKEVFVEEVDWNSPEPPN 295 R+ NP WV+P+SII K +A D Y +++ + + G V +V Sbjct: 279 RMDVNPQWVMPKSIIDKS-VARHAGDSAYFENHRYFIRNRETGNRVDPRQVTSEMLRSGQ 337 Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 + Q+ GK NAM F + Y+HDT +F+ R + GCVRV +L V+ Sbjct: 338 YFVIQEGGKGNAMGRIVFRFKNNFAVYLHDTSSRGVFDQSNRGVSHGCVRVEKPFELAVF 397 Query: 356 LLKDTPTWSRYHIEEVV------------------------KTRKTTPVKLATEVPVHFV 391 LLKD + + +++ V++ VP++ Sbjct: 398 LLKDKDEELIEKMRYSMQADIHSHYQKKLTATSNLPNDTLQESKLINSVRVQPAVPLYIT 457 Query: 392 YISAWSPKDSIIQFRDDIYGLDNVHVGII 420 Y + + + ++ DIYG D V + Sbjct: 458 YYTLYPNEQHGMREYQDIYGFDAVIYKQL 486 >gi|148553414|ref|YP_001260996.1| hypothetical protein Swit_0490 [Sphingomonas wittichii RW1] gi|148498604|gb|ABQ66858.1| Uncharacterized protein [Sphingomonas wittichii RW1] Length = 572 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 68/254 (26%), Positives = 110/254 (43%), Gaps = 21/254 (8%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 +++L++NL R + L R+V+V+ +A L E GK V+VG + + Sbjct: 333 SPRETVQRLRLNLDRARLLPG--PWTRHVVVDAASARLWYYEGGKQRAMMRVVVGAPETE 390 Query: 228 TPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD--PQYLKDNNIHMIDEKGKEVFVEE 285 TP+L + + NPYW +P +IQ+ + + P L+ + + + +E Sbjct: 391 TPMLAGMVRYAVLNPYWNVPDYLIQRRLAPKIVAGATPASLRMEVLSDWSASPRRLAGDE 450 Query: 286 VDWNSPEPPN--FIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 VDW + RQ PG+ NAM K F + Y+HDTP+ L + R ++GC Sbjct: 451 VDWPAVAAGRKLVRMRQLPGRDNAMGRVKFIFPNDLGIYLHDTPDKGLLSKADRHLSNGC 510 Query: 344 VRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRK---TTPVKLATEVPVHFVYISAWSPKD 400 +R L+D P R + V L +PV+ YI+A + Sbjct: 511 IR-----------LQDAPGLYRLMFGRPLPAASKQPERDVALPAPIPVYLTYITATPTER 559 Query: 401 SIIQFRDDIYGLDN 414 I F D+YG D Sbjct: 560 G-IGFLKDVYGRDE 572 >gi|240142210|ref|YP_002966720.1| hypothetical protein MexAM1_META2p0532 [Methylobacterium extorquens AM1] gi|240012154|gb|ACS43379.1| Hypothetical protein MexAM1_META2p0532 [Methylobacterium extorquens AM1] Length = 290 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 101/223 (45%), Gaps = 8/223 (3%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R V+VN+ L A +G+ L S V+VGR TP L + + + NP W +P +I++ Sbjct: 66 RLVVVNVAGRFLAAYRDGEPELESRVVVGRDGWHTPDLATSVASVTLNPTWTVPETILRD 125 Query: 254 D-MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 + L DP + + N ++ G+ V + V + E Q PG NA+ K Sbjct: 126 EGWRGELASDPGWAERNGFDVLLG-GRRVAADRV--GTAELLKATLVQRPGADNALGRMK 182 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 I + + Y+HDT EP F++ + GCVRV ++L W+L S + ++V Sbjct: 183 IAMRNAGSIYLHDTNEPGGFDDPGHSGSHGCVRVELALELATWVL----GASGPEVADLV 238 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNV 415 T VPV F Y +AW + + DIY D Sbjct: 239 LGGSTIVRTTPEPVPVVFGYFTAWPDAVGRVAYYPDIYRRDAA 281 >gi|204789654|gb|ACI02035.1| hypothetical protein [uncultured bacterium] Length = 397 Score = 213 bits (543), Expect = 4e-53, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 5/191 (2%) Query: 175 QLQVNLMRIKKLLEQKM--GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILH 232 ++ VN+ R + +YVLVNIP+ L A++ + L + G +TPIL+ Sbjct: 209 KILVNMERCRWREADSPARHKKYVLVNIPSFHLYAIDE-QDTLAMKIGCGSTKTKTPILN 267 Query: 233 SRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEK-GKEVFVEEVDWNSP 291 S I R+ NP W +PRSI+ KDM+ +P Y N ++ D G+EV +V Sbjct: 268 SYIKRMDLNPKWFVPRSIMVKDMV-HHAGNPAYFNARNYYISDRSTGEEVNPAQVTRTML 326 Query: 292 EPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIID 351 + Q GK N++ F + + Y+HDT +F+ R + GC+RV + Sbjct: 327 LSGKYGVVQRGGKGNSLGRIIFRFDNNFSVYLHDTSSQAVFSREDRDVSHGCIRVEKPFE 386 Query: 352 LDVWLLKDTPT 362 L +LL + Sbjct: 387 LAKFLLHEKNE 397 >gi|218458505|ref|ZP_03498596.1| hypothetical protein RetlK5_03208 [Rhizobium etli Kim 5] Length = 239 Score = 196 bits (498), Expect = 8e-48, Method: Composition-based stats. Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 17/229 (7%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPI---RPLHLGNSSVSVQRLRERLIISGDLD---- 125 + +A + G ++ + L G+SS + + + + G Sbjct: 14 PQFEALKAELAKLRA-ADGGNEGQIVVSLSGLLRPGDSSPEIANIVKAVQKHGSETLRTD 72 Query: 126 -----PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV--PVDLRIRQLQV 178 + + + + V+ FQ GL G++ +T+ AM +I +L+V Sbjct: 73 HAATFAAYAGGSDYSPEIVALVEDFQKERGLKADGVIGQATVRAMTGGDTNASKIDKLEV 132 Query: 179 NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 + + + L + +G RYV++N PA ++GK L V+VG + QT + I + Sbjct: 133 AMEQAR-WLPEDLGSRYVMINQPAYMAYYHDDGKEQLSMRVVVGGKNNQTYFFNDEIETV 191 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD 287 FNP+W +P+SII +M+ LR DP YL + G V VD Sbjct: 192 EFNPFWGVPQSIIINEMLPKLRSDPNYLDQLGYEV-RVNGHAVASSSVD 239 >gi|163759200|ref|ZP_02166286.1| hypothetical protein HPDFL43_05530 [Hoeflea phototrophica DFL-43] gi|162283604|gb|EDQ33889.1| hypothetical protein HPDFL43_05530 [Hoeflea phototrophica DFL-43] Length = 125 Score = 190 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 63/120 (52%), Positives = 91/120 (75%) Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 +FRQDPGK NAM+STKI F++ + YMHDTP+ +FN ++RFE+SGCVRV+N+ DL+ WL Sbjct: 1 MFRQDPGKGNAMSSTKINFHNPHAVYMHDTPQQGVFNQLMRFESSGCVRVQNVRDLNTWL 60 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVH 416 L+DTP W+R IE + + ++T + L+ VPV+F Y +AW+ +D ++QFRDD+Y D V Sbjct: 61 LRDTPGWNRQAIEATIASGESTEILLSEPVPVYFTYFTAWASEDGVVQFRDDVYQRDGVE 120 >gi|218680582|ref|ZP_03528479.1| Peptidoglycan-binding domain 1 protein [Rhizobium etli CIAT 894] Length = 150 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 84/132 (63%), Positives = 103/132 (78%), Gaps = 1/132 (0%) Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 E +DWN E PN +FRQDPGK NAMASTKI FY++N YMHDTP+ LFN ++RFE+SG Sbjct: 3 PETIDWNG-EAPNLMFRQDPGKTNAMASTKINFYNKNGEYMHDTPQQGLFNKLMRFESSG 61 Query: 343 CVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI 402 CVRV+N+ DL WLL++TP W+R +E+V+ T TPVKLATEVPV+FVYISAW D I Sbjct: 62 CVRVQNVRDLSNWLLRETPGWNRQQMEQVIATGVNTPVKLATEVPVYFVYISAWGMPDGI 121 Query: 403 IQFRDDIYGLDN 414 +QFRDDIY +D Sbjct: 122 VQFRDDIYQMDG 133 >gi|218515096|ref|ZP_03511936.1| hypothetical protein Retl8_16076 [Rhizobium etli 8C-3] Length = 152 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 5/150 (3%) Query: 277 KGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVV 336 G V VDW N RQ P NA+ KI F + + YMHDTP F + Sbjct: 3 NGHAVASSSVDWYG-STDNVSVRQPPSSDNALGELKILFPNSHAIYMHDTPSKSFFKRDM 61 Query: 337 RFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 R + GCVR+ N + +L + + + + + + V++ ++PV+ Y +AW Sbjct: 62 RALSHGCVRLSNPRAMAAAVLGT----TVDDVAKQIASGQNHAVRVPQKIPVYVSYFTAW 117 Query: 397 SPKDSIIQFRDDIYGLDNVHVGIIPLPEDH 426 K+ ++++ DD+YG D Sbjct: 118 PNKEGVVEYFDDVYGRDAYVEKAFDATTKA 147 >gi|312890410|ref|ZP_07749947.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] gi|311297180|gb|EFQ74312.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] Length = 436 Score = 177 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 87/206 (42%), Gaps = 31/206 (15%) Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 T A + + R + VNL R++ + +YVLVNIP L ++NGK L V Sbjct: 234 GTTAAPGMSAEETQRAILVNLERLR-WKNKPSESKYVLVNIPDYQLNFMDNGKSILNMKV 292 Query: 220 IVG---------------------RV-DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMA 257 VG R R+TP L+S I NP W IP+SI K+++ Sbjct: 293 CVGEGRNKDHSHNLVEYDDSYQIDRPFSRETPQLNSMIYVAEVNPVWNIPQSIASKEIIV 352 Query: 258 LLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP---NFIFRQDPGKINAMASTKIE 314 +DP YL + NI + + E + W + ++ F+Q PG N++ K Sbjct: 353 EAAKDPYYLSNKNIVVYKGGQEVEDPETIKWATLSENEKASYSFKQKPGDDNSLGKIKFL 412 Query: 315 FYSRNNTYMHDT---PEPILFNNVVR 337 F + N Y+ T P L N R Sbjct: 413 FKNSTNVYL--TILRPSRHLLNRCGR 436 >gi|254501948|ref|ZP_05114099.1| hypothetical protein SADFL11_1986 [Labrenzia alexandrii DFL-11] gi|222438019|gb|EEE44698.1| hypothetical protein SADFL11_1986 [Labrenzia alexandrii DFL-11] Length = 522 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 77/429 (17%), Positives = 143/429 (33%), Gaps = 19/429 (4%) Query: 10 ILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHS-IVNDRFDNFLARVDMGIDSDIP 68 + F L L + VL H+ D A + I Sbjct: 100 WIELLFTGHFLDFANDLRAGRVTPRVLYPGAYMPVHTINGTDALKRLAAAPQLLDFVSIW 159 Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 +T + + + GG+ L I+ L G V LR R+ G L Sbjct: 160 EPQDDTYRLLKTHLERLYAVKDDGGFTYLDIQEELSPGAQGDQVPDLRRRMFEDG-LVGE 218 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL 187 FD + AV + R+ L S V + A+N+P++ RI Q+ + RI+ + Sbjct: 219 GTGGELFDKRLAFAVAQSKHRYVLPVSSEVTPRLIRALNIPIERRIEQVSNAMERIRWIP 278 Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + +N E+G+V + DR + I + F+P W +P Sbjct: 279 P-EFSRVKLFINKGENQFVFSESGRVVMEGQAFANCPDRNHANTATAIEAVTFHPTWQVP 337 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPP-------NFIFRQ 300 + +++ L+ DP ++ ++ KG +V + + W P F Sbjct: 338 LEFLGNELLPRLKDDPTEVEGVGYYL-RRKGADVPLSSLPWGQATPRAINRFKDEFNLYL 396 Query: 301 DPGKINAMASTKIEFY--SRNNTYMHDT-PEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 N + S + + D+ PE +F N + + + + L ++ Sbjct: 397 PASDENPLGSYAFRLRQEQKLALFHLDSAPEDGVFCNPY--LPANAFGIVDGLALLEQVI 454 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHV 417 + + IE + T + + + S W I+F D Y D+ Sbjct: 455 EPRV-FPAEGIENRLARGDTITFPARSGLMAVATHQSVWLQYQGAIRFGHDPYLEDSRLT 513 Query: 418 GII-PLPED 425 + P+ Sbjct: 514 AALSGRPKP 522 >gi|46204583|ref|ZP_00209472.1| COG2989: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 259 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 2/137 (1%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLIISG 122 + +P + +T +T +A YQ GGW LP G+S ++ LR L ++G Sbjct: 124 EDPLPTFTAQTFVETMRAAERYQVYAEAGGWKTLPADFAPKPGDSHPAIPSLRHHLTLTG 183 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 DL S +D + +AVK FQ RHGL +G+ TL A+NVP ++R RQL+ + R Sbjct: 184 DLPADAPPSDRYDPPLVAAVKSFQARHGLPDAGIFGRLTLNALNVPAEVRQRQLRASAQR 243 Query: 183 IKKLLEQKMGLRYVLVN 199 + G RYV VN Sbjct: 244 LMG-SSFAFGERYVTVN 259 >gi|262361435|gb|ACY58156.1| hypothetical protein YPD4_1248 [Yersinia pestis D106004] Length = 412 Score = 147 bits (371), Expect = 4e-33, Method: Composition-based stats. Identities = 60/279 (21%), Positives = 100/279 (35%), Gaps = 54/279 (19%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHS---IVN 49 M+GYL + LY Y + +++ ++E SY + + Sbjct: 138 MLGYLHFISGVGANGSVWLYSNVPYKMAMPPAAVLN--AWQKAVNEGSTASYLASLAPQH 195 Query: 50 DRFDNFLARVDMGIDSDIPIISKETIAQTEKA-----IAFYQDILSRGGW--PELPIR-P 101 ++D + + + P T I ++IL R G P P++ P Sbjct: 196 PQYDKMQQALKLMLADRRPWPQMPTGPSLRPGQLSDDIPALREILDRTGMLHPTTPVKAP 255 Query: 102 LHLGNSSVSVQRLRERLII-----------------------SGDLDPSKG--------L 130 + + +V + + L + S D P+ Sbjct: 256 EVIPVENPTVAVVNDDLSVDEEKNRTQTNSLVVSPSAVSVPESDDAAPAPMPPVSVVTLT 315 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + + AVK FQ GL G++ T E +NV R L +N+ R++ L Sbjct: 316 DNIYTPELVEAVKRFQQWQGLTDDGVIGPRTREWLNVSPQTRATLLALNIQRLRILPGHV 375 Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 ++VNIP SL ++G L S VIVGR R+TP Sbjct: 376 --DNGIMVNIPNYSLNYYKDGAEVLSSRVIVGRPSRKTP 412 >gi|254489086|ref|ZP_05102290.1| peptidoglycan-binding domain 1 [Roseobacter sp. GAI101] gi|214042094|gb|EEB82733.1| peptidoglycan-binding domain 1 [Roseobacter sp. GAI101] Length = 236 Score = 145 bits (367), Expect = 1e-32, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 78/217 (35%), Gaps = 44/217 (20%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 +LVNIPA L A + G LRS +IVG +TP L + ++ + F P W S+I Sbjct: 61 ILVNIPAFELIAFDRGVPVLRSRIIVGTPWHRTPRLTTYVSAVRFRPTWRPTPSMI---- 116 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 +Y W PG+ N + I Sbjct: 117 -----ASGEYADR------------------VW------------PPGRNNPLGLVAIRL 141 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 Y+HDT F+ R + GCVRV+ L ++L + + R Sbjct: 142 QPGLLVYLHDTNHREKFDQEYRALSHGCVRVQQWDRLVAFVL----GIDLAEVHRLANGR 197 Query: 376 KTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 +T V A +PV Y + + I DIY L Sbjct: 198 ETFDVP-APPIPVTLGYFTRFPNAAGQIVDHPDIYRL 233 >gi|289808938|ref|ZP_06539567.1| hypothetical protein Salmonellaentericaenterica_32767 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 108 Score = 136 bits (342), Expect = 1e-29, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 323 MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKL 382 MHDTP LF R +SGCVRV +L LL+D W+ I +K T V + Sbjct: 1 MHDTPNHNLFQRDARALSSGCVRVNKASELANMLLQDA-GWNDARISGALKQGDTRYVNI 59 Query: 383 ATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +PV+ Y++A+ D +Q+R DIY D Sbjct: 60 RQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 90 >gi|312885582|ref|ZP_07745218.1| conserved hypothetical protein [Mucilaginibacter paludis DSM 18603] gi|311301894|gb|EFQ78927.1| conserved hypothetical protein [Mucilaginibacter paludis DSM 18603] Length = 468 Score = 131 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 103/259 (39%), Gaps = 19/259 (7%) Query: 169 VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + +R++ VN+ R++ + G Y+ +NIP+ +L+ G + V VG+ R+T Sbjct: 211 PEASLRRVAVNMERLRWMPVN--GRTYIQINIPSLTLKLHR-GDTDISYRVAVGK--RET 265 Query: 229 PIL--HSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE-- 284 P L + I+ P +P + + + ++++ + D GK + Sbjct: 266 PALMASGALTSIVVGPP--VPD---NRRWLPPSISNISSVEEHGFQVYDRNGKWIDPTVA 320 Query: 285 EVDWNSPEPPNFIFRQDP--GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 + P + P G + ++ +L+ ++G Sbjct: 321 NIKMARQNPAKYKLISAPAVGPGKGSGIL-FKMNGIAGVHLLGCTGGLLYKPRQPATSNG 379 Query: 343 CVRVRNIIDLDVWLLK-DTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 +++ +L LLK D S + V+ ++ + + +PV+ Y++ KD Sbjct: 380 TIQLVQAENLADALLKGDNSLHSAEQLHRVIARKERSNYRFKKPMPVYITYLTCAV-KDG 438 Query: 402 IIQFRDDIYGLDNVHVGII 420 +++ +D+Y D+ ++ Sbjct: 439 LLETYEDVYHKDDHLASVM 457 >gi|330860173|emb|CBX70494.1| hypothetical protein YEW_AT04130 [Yersinia enterocolitica W22703] Length = 132 Score = 129 bits (325), Expect = 9e-28, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 5/95 (5%) Query: 220 IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 IVGR R+TP++ S +N ++ NP W +P S++++D++ R D Y + + ++ Sbjct: 2 IVGRPSRKTPLMSSALNNVVVNPPWNVPTSLVRQDIVPKARYDSSYFQRHGYTVLSGWSN 61 Query: 280 E---VFVEEVDWNSPEPPNFIF--RQDPGKINAMA 309 + V +DW+ P NF + RQ PG N++ Sbjct: 62 DAEVVDPSMIDWSMISPNNFPYRLRQAPGASNSLG 96 >gi|218659271|ref|ZP_03515201.1| hypothetical protein RetlI_06191 [Rhizobium etli IE4771] Length = 211 Score = 124 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 75/189 (39%), Gaps = 18/189 (9%) Query: 55 FLARVDMGIDSDIPIISKE--TIAQTEKAIAFYQDILSRGGWPELPI---RPLHLGNSSV 109 LAR+ + I S + + +A + G ++ + L G+SS Sbjct: 25 KLARMSPDTGAYIASRSPDSPQFEALKAELAKLRA-ADGGNEEQIVVSLSGLLRPGDSSP 83 Query: 110 SVQRLRERLIISGDLD---------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + + + + G + + + + V+ FQ GL G++ + Sbjct: 84 EIANIVKAVQKHGSETLRTDHAATFAAYAGGSDYSPEIVALVEDFQKERGLKADGVIGQA 143 Query: 161 TLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 T+ AM +I +L+V + + + L + +G RYV++N PA +GK L Sbjct: 144 TVRAMTGGDTNASKIDKLEVAMEQAR-WLPEDLGSRYVMINQPAYMAYYHNDGKEQLSMR 202 Query: 219 VIVGRVDRQ 227 V+VG + Q Sbjct: 203 VVVGGKNNQ 211 >gi|261213952|ref|ZP_05928233.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str. Tulya] gi|260915559|gb|EEX82420.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str. Tulya] Length = 527 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 85/225 (37%), Gaps = 17/225 (7%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 250 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 308 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 309 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 366 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 367 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 426 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 ++ L G RYV+VN PA E+G+ L V++G + Sbjct: 427 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHR 470 >gi|260754701|ref|ZP_05867049.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str. 870] gi|260674809|gb|EEX61630.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str. 870] Length = 527 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 85/225 (37%), Gaps = 17/225 (7%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 250 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 308 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 309 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 366 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 367 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 426 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 ++ L G RYV+VN PA E+G+ L V++G + Sbjct: 427 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHR 470 >gi|260757925|ref|ZP_05870273.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4 str. 292] gi|260761747|ref|ZP_05874090.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2 str. 86/8/59] gi|260668243|gb|EEX55183.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4 str. 292] gi|260672179|gb|EEX59000.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2 str. 86/8/59] Length = 527 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 85/225 (37%), Gaps = 17/225 (7%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 250 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 308 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 309 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 366 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 367 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 426 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 ++ L G RYV+VN PA E+G+ L V++G + Sbjct: 427 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHR 470 >gi|260883727|ref|ZP_05895341.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260873255|gb|EEX80324.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 9 str. C68] Length = 517 Score = 123 bits (309), Expect = 6e-26, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 85/225 (37%), Gaps = 17/225 (7%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 240 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 298 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 299 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 356 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 357 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 416 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 ++ L G RYV+VN PA E+G+ L V++G + Sbjct: 417 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHR 460 >gi|260545357|ref|ZP_05821098.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC 8038] gi|260096764|gb|EEW80639.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC 8038] Length = 517 Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 85/225 (37%), Gaps = 17/225 (7%) Query: 16 VYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE-- 73 L + E I A L + + LAR + + + + Sbjct: 240 SARALRYAIDAGEGRIIADRLSGFHDLPRTRVNPKAVLEQLAR-ESDPSAYLHGFQPDNA 298 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVS---VQRLRER------LIISGD 123 A ++A+A + RG + + G+ S V L R L D Sbjct: 299 QYAALKRALADTE--PPRGKPIRISFDGVIKPGDKSEQLSKVVALISRHAPADYLAQHRD 356 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP-VDLRIRQLQVNLMR 182 + + + +D + SA+K +Q G P G++ +T+ A+ +R ++ ++ R Sbjct: 357 VLAAHADASVYDPELVSAIKDYQKLSGGTPDGLIGRATISALQGEQTSIRRDRILYSMER 416 Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ 227 ++ L G RYV+VN PA E+G+ L V++G + Sbjct: 417 LR-WLPHDFGKRYVMVNQPAYHAGYYEDGQQKLGMNVVIGSPTHR 460 >gi|307946679|ref|ZP_07662014.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] gi|307770343|gb|EFO29569.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] Length = 97 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 331 LFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHF 390 +FN R + GC+RV DL LL +S+ +E++ +K T +KL + VH Sbjct: 1 MFNRAQRDFSHGCIRVAKPFDLGDVLLSP-EGYSKGKLEKIRDGQKRTVIKLNKPLKVHL 59 Query: 391 VYISAWSPKDSIIQFRDDIYGLDNVHVGIIP 421 Y++AW KD FR DIY D V + + Sbjct: 60 TYLTAWMNKDGSTHFRRDIYSRDAVLLKALR 90 >gi|330860174|emb|CBX70495.1| hypothetical protein YEW_AT04140 [Yersinia enterocolitica W22703] Length = 112 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 + + + AVK FQ HGL G++ + T E +NV R L +N+ R++ L Sbjct: 15 ATVTDNVYTPELMEAVKRFQRWHGLSDDGVIGARTREWLNVSPQTRATLLALNIQRLRIL 74 Query: 187 LEQKMGLRYVLVNIPAASLEAVEN 210 + ++VNIP SL + Sbjct: 75 PGRV--DNGIMVNIPNYSLNYYKK 96 >gi|312890411|ref|ZP_07749948.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] gi|311297181|gb|EFQ74313.1| ErfK/YbiS/YcfS/YnhG family protein [Mucilaginibacter paludis DSM 18603] Length = 91 Score = 104 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 40/85 (47%) Query: 336 VRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISA 395 +R + GCVR+ +D L D+ + V + T + L +VPV+ Y + Sbjct: 1 MRAVSHGCVRLEKPLDFAHALFGDSAKYKTIEKCIVEDNPEPTSLSLNNKVPVYITYFTC 60 Query: 396 WSPKDSIIQFRDDIYGLDNVHVGII 420 WS +QFR DIYGLD V + Sbjct: 61 WSDDSGTLQFRKDIYGLDIVLYAHL 85 >gi|218458323|ref|ZP_03498414.1| hypothetical protein RetlK5_02246 [Rhizobium etli Kim 5] Length = 90 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 44/73 (60%), Positives = 56/73 (76%) Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDS 401 GCVRV+N+ DL WLL++TP WSR +E+V+ + TP+KLA EVPV+FVYISAW D Sbjct: 1 GCVRVQNVRDLTNWLLRETPGWSRQQMEQVIASGVNTPIKLAAEVPVYFVYISAWGMPDG 60 Query: 402 IIQFRDDIYGLDN 414 I+QFRDDIY +D Sbjct: 61 IVQFRDDIYQMDG 73 >gi|330860172|emb|CBX70493.1| hypothetical protein YEW_AT04120 [Yersinia enterocolitica W22703] Length = 85 Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 346 VRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF 405 + DL LL+D W+ + +K TT V + VPV Y++AW D QF Sbjct: 1 MNKASDLANMLLQDA-GWNDARVSSTLKQGDTTYVNIRQRVPVQLYYLTAWVADDGKPQF 59 Query: 406 RDDIYGLD 413 R DIY D Sbjct: 60 RTDIYNYD 67 >gi|31790351|gb|AAP58608.1| hypothetical protein [uncultured Acidobacteria bacterium] Length = 335 Score = 91.0 bits (225), Expect = 3e-16, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 70/229 (30%), Gaps = 44/229 (19%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + +N+P L +NGK + VG + I I++NP W+ Sbjct: 81 FAPDQPDIRLTLNVPTFRLTLWQNGKEVKSYYIGVGMKEHPLDIGAREAREIIWNPAWIP 140 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P S ++M K V EV + N Sbjct: 141 PPSDWVREM-----------------------KGVSPGEV------------IKASDPRN 165 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDV-WLLKDTPTW 363 + KI + ++V + GCVR+ DL + + Sbjct: 166 PLGKLKIPLGDSYLIHQ----ARGW-SDVGNLVSHGCVRMPRPELYDLADKIVAARSLPV 220 Query: 364 SRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGL 412 S IE + KT V+ + + V Y + +D + D+YG Sbjct: 221 SSKRIEAAKHSFKTLVVRFDSPLSVDINYDTM-VIEDGTLHLYPDVYGR 268 >gi|296132569|ref|YP_003639816.1| ErfK/YbiS/YcfS/YnhG family protein [Thermincola sp. JR] gi|296031147|gb|ADG81915.1| ErfK/YbiS/YcfS/YnhG family protein [Thermincola potens JR] Length = 279 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 48/137 (35%), Gaps = 19/137 (13%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 S V+ ++ERL+ G + FD +AV FQ GL G+V T A+ Sbjct: 16 SGPDVKAVQERLVDLGYYKG--RVDGVFDPATANAVVAFQKSRGLKADGVVGPDTWSALG 73 Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRY-VLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 + + G Y + ++ L ++G V VG+ Sbjct: 74 TDMAVSAA----------------PGQGYRIFIDTERFRLSLFKDGVHQAAWPVAVGKPS 117 Query: 226 RQTPILHSRINRIMFNP 242 TPI I + NP Sbjct: 118 TPTPIGDWVITEKIMNP 134 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 3/70 (4%) Query: 97 LPIRPLHLG-NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 R L +G + ++++RL G L F +AV FQ GL P G Sbjct: 199 FTGRLLQIGIPPGSDIVQVQQRLQTLGYYKEE--LDGQFGPTTRNAVIAFQRVRGLVPDG 256 Query: 156 MVDSSTLEAM 165 +V T E + Sbjct: 257 IVGPRTYEEL 266 >gi|157374221|ref|YP_001472821.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sediminis HAW-EB3] gi|157316595|gb|ABV35693.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sediminis HAW-EB3] Length = 333 Score = 80.6 bits (198), Expect = 5e-13, Method: Composition-based stats. Identities = 46/190 (24%), Positives = 75/190 (39%), Gaps = 40/190 (21%) Query: 186 LLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + + +++N+P L NGK V +GRV R+TP + ++I + NP W Sbjct: 84 MLLPDVPRKGIVINLPELRLYYFPTNGKEVHVFPVGIGRVGRETPEMVTKIKSRIPNPSW 143 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P SI R+D +L + EV V G Sbjct: 144 TPPASI---------RRD--HLAERG---------EVLPRVV--------------PAGP 169 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + ++ + +Y +H T + F +R +SGCVR+ N D++ + Sbjct: 170 DNPLGKYAMQLSHGDGSYLIHGTNKD--FGVGMR-VSSGCVRL-NPDDIEWLFHQAKYGD 225 Query: 364 SRYHIEEVVK 373 S I E VK Sbjct: 226 SVRVINETVK 235 >gi|170725525|ref|YP_001759551.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella woodyi ATCC 51908] gi|169810872|gb|ACA85456.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella woodyi ATCC 51908] Length = 301 Score = 79.9 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 40/194 (20%) Query: 186 LLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + +++N+P L +NGK V +GR+ R+TP + ++I + NP W Sbjct: 84 MLLPDVPRTGIVINLPELRLYYFPKNGKEVHVFPVGIGRIGRETPEMVTKIKSRIPNPSW 143 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P SI +KD +L++ EV V G Sbjct: 144 TPPASI-RKD----------HLEERG---------EVLPRIV--------------PAGP 169 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + ++ + +Y +H T + F +R +SGC+R+ N D++ + Sbjct: 170 DNPLGKYAMQLSYGDGSYLIHGTNKD--FGIGMR-VSSGCIRL-NPDDIEWLFHQAKYGD 225 Query: 364 SRYHIEEVVKTRKT 377 S I + VKT Sbjct: 226 SVRIINQTVKTSSE 239 >gi|120554152|ref|YP_958503.1| hypothetical protein Maqu_1226 [Marinobacter aquaeolei VT8] gi|120324001|gb|ABM18316.1| conserved hypothetical protein [Marinobacter aquaeolei VT8] Length = 87 Score = 79.1 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 15/86 (17%) Query: 78 TEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLD---------- 125 +A Y+ + +GGWP+LP R L G+ V LR+RL+++G+L Sbjct: 1 MRAGLAQYRHLERQGGWPQLPNRQQSLRPGDVHEEVALLRKRLLVTGELAITHVDELAGQ 60 Query: 126 ---PSKGLSVAFDAYVESAVKLFQMR 148 S + +D ++ AV+ FQ Sbjct: 61 SIVSSHPETYEYDEHLVDAVRRFQQH 86 >gi|159040579|ref|YP_001539832.1| cell wall hydrolase/autolysin [Salinispora arenicola CNS-205] gi|157919414|gb|ABW00842.1| cell wall hydrolase/autolysin [Salinispora arenicola CNS-205] Length = 387 Score = 79.1 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 19/104 (18%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +RP+ G+ +V +R L L PS S FDA+ E AV+ FQ GL G V Sbjct: 1 MRPIRPGDRGPAVTEIRRVLAGLDLLVPSAPDSDEFDAHTERAVRAFQQSRGLSVDGRVG 60 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 + T A++ R + +G R + ++P Sbjct: 61 TETWRALD-------------AARWR------LGARTLYHSVPE 85 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 45/131 (34%), Gaps = 23/131 (17%) Query: 56 LARVDMGIDSDIPII--SKETIAQTEKAIAFYQD--------ILSRGGWPELPIRPLHLG 105 + RV G+D +P S E A TE+A+ +Q + W L LG Sbjct: 16 IRRVLAGLDLLVPSAPDSDEFDAHTERAVRAFQQSRGLSVDGRVGTETWRALDAARWRLG 75 Query: 106 NS-----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 ++ L+ERL+ G + A+ FQ GL P Sbjct: 76 ARTLYHSVPEPLTGEDIRSLQERLLEMGY--DVGRADAIYGVRTARALAQFQREVGLIPD 133 Query: 155 GMVDSSTLEAM 165 G TL ++ Sbjct: 134 GTCGPHTLNSL 144 >gi|145597090|ref|YP_001161387.1| cell wall hydrolase/autolysin [Salinispora tropica CNB-440] gi|145306427|gb|ABP57009.1| cell wall hydrolase/autolysin [Salinispora tropica CNB-440] Length = 392 Score = 78.3 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 19/104 (18%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +RP+ G+ +V +R+ L L P+ S FDA+ E AV+ FQ GL G V Sbjct: 1 MRPIRPGDRGPAVTEIRKVLAGLDLLVPAAPDSDEFDAHTERAVRAFQQSRGLSVDGRVG 60 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 + T +A++ R + +G R + ++P Sbjct: 61 TETWQALD-------------AARWR------LGARTLYHSVPE 85 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 23/131 (17%) Query: 56 LARVDMGIDSDIPII--SKETIAQTEKAIAFYQD--------ILSRGGWPELPIRPLHLG 105 + +V G+D +P S E A TE+A+ +Q + W L LG Sbjct: 16 IRKVLAGLDLLVPAAPDSDEFDAHTERAVRAFQQSRGLSVDGRVGTETWQALDAARWRLG 75 Query: 106 NS-----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 ++ L+ERL+ G + A+ FQ GL P Sbjct: 76 ARTLYHSVPEPLIGEDIRSLQERLLEMGY--DVGRADAIYGVRTARALAQFQREVGLAPD 133 Query: 155 GMVDSSTLEAM 165 G T+ ++ Sbjct: 134 GTCGPHTVNSL 144 >gi|218507870|ref|ZP_03505748.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli Brasil 5] Length = 103 Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%) Query: 33 ASVLDEIINESYHSIVNDRFDNFLA-RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 S LD ++N +D+FD A R + S+ PI+ +++A ++AI YQ I + Sbjct: 35 QSALDGLLNAPRRGNWDDQFDAKAASRTASAVVSNTPILGPQSVASAQQAIMQYQQIAAA 94 Query: 92 GGWPEL 97 GGWPE+ Sbjct: 95 GGWPEV 100 >gi|329118082|ref|ZP_08246794.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria bacilliformis ATCC BAA-1200] gi|327465742|gb|EGF12015.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria bacilliformis ATCC BAA-1200] Length = 349 Score = 76.4 bits (187), Expect = 9e-12, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 74/234 (31%), Gaps = 73/234 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +V++NIP L +GK+ V VG+ QT I +I FNP W IP+SI QK Sbjct: 57 THVVINIPQQRLFLYSDGKLSKIYPVAVGKAMTQTNIGSHKIGAKAFNPTWHIPKSI-QK 115 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 ++ N I + PG N + + Sbjct: 116 EL------------KNGITSV--------------------------PPGPKNPLGPVFV 137 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P +V + GCVR+++ L + V Sbjct: 138 RLGDPKLGLGIHGTNAP---ASVPGVRSHGCVRMKSPDAL--------------QFAKTV 180 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGIIP 421 T P +Y A +D + FR D Y N+ + Sbjct: 181 STGS----------PADVIYQMAALNEDGAGNLWLAAFR-DPYNKKNLDTAALR 223 >gi|302531346|ref|ZP_07283688.1| N-acetylmuramoyl-L-alanine amidase [Streptomyces sp. AA4] gi|302440241|gb|EFL12057.1| N-acetylmuramoyl-L-alanine amidase [Streptomyces sp. AA4] Length = 382 Score = 76.4 bits (187), Expect = 9e-12, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS--VAFDAYVESAVKLFQMRHGLDPSGM 156 +R L G++ V +R L L P G FD VE AV+ FQ R GL G+ Sbjct: 1 MRVLRRGDAGPDVAEIRSILAGMDLLPPVAGTERYNTFDVAVEQAVRAFQQRRGLITDGV 60 Query: 157 VDSSTLEAM 165 V +T +A+ Sbjct: 61 VGPATYQAL 69 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 8/96 (8%) Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSV----SVQRLRERLIISGDLDPSKGLSVAFDAYV 138 A YQ + +G L RPL SS V L+ERL G + F Sbjct: 64 ATYQAL--KGASYHLGSRPLQYLLSSPVHGDDVFTLQERLTELGF--DAGRPDGYFGPQT 119 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 E A++ FQ L G+ +T+ ++ R R Sbjct: 120 ERALRTFQRDMRLTSDGICGPATIRELHRLSSPRAR 155 >gi|163751582|ref|ZP_02158804.1| hypothetical protein KT99_01257 [Shewanella benthica KT99] gi|161328590|gb|EDP99743.1| hypothetical protein KT99_01257 [Shewanella benthica KT99] Length = 320 Score = 76.0 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 41/190 (21%) Query: 186 LLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + + +++N+P L +NGK V +GR+ R+TP + ++I + NP W Sbjct: 104 MLLPDVPRKGIVLNLPELRLYYFPKNGKQVHVFPVGIGRIGRETPEMVTKIKARIPNPSW 163 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P SI +K+ + EV V G Sbjct: 164 TPPASI-RKEHLER--------------------GEVLPAIV--------------PAGP 188 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + + ++ + +Y +H T + F +R +SGCVR+ N D++ + Sbjct: 189 DNPLGNYAMQLSYGDGSYLIHGTNKD--FGVGMR-VSSGCVRL-NPDDIEWLFNQTQYGD 244 Query: 364 SRYHIEEVVK 373 I + VK Sbjct: 245 PVRVINQTVK 254 >gi|331700382|ref|YP_004336621.1| cell wall hydrolase/autolysin [Pseudonocardia dioxanivorans CB1190] gi|326955071|gb|AEA28768.1| cell wall hydrolase/autolysin [Pseudonocardia dioxanivorans CB1190] Length = 388 Score = 75.3 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 102 LHLGNSSVSVQRLRERLIISGD-----LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L G+S +V +R L G P FD +VE AV+ FQ R GL G+ Sbjct: 4 LRRGDSGPAVAEIRGMLARYGLPAGQQAPPGGPAEQLFDEHVEQAVRAFQQRRGLITDGV 63 Query: 157 VDSSTLEAM 165 V +T A+ Sbjct: 64 VGPATYRAL 72 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 45/129 (34%), Gaps = 13/129 (10%) Query: 41 NESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR 100 FD + + +I+ + A Y+ + G W +L R Sbjct: 30 QAPPGGPAEQLFDEHVEQAVRAFQQRRGLITDGVV-----GPATYRALREAG-W-KLGDR 82 Query: 101 PLHL----GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L L S V L+ERL+ G FD E +K FQ +GL P G+ Sbjct: 83 MLALLISAPMSGDDVVTLQERLLELGY--DVGRPGGVFDDQTERGLKGFQRDYGLVPDGV 140 Query: 157 VDSSTLEAM 165 TL A+ Sbjct: 141 CGPQTLRAL 149 >gi|302870718|ref|YP_003839355.1| cell wall hydrolase/autolysin [Micromonospora aurantiaca ATCC 27029] gi|302573577|gb|ADL49779.1| cell wall hydrolase/autolysin [Micromonospora aurantiaca ATCC 27029] Length = 417 Score = 75.3 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + +RP+ G+ +V +R L L G +DA E AV+ FQ GL G Sbjct: 30 VVVRPIRPGDQGPAVAEIRTVLAGLELLPAEAGGDD-YDAQTERAVRAFQQSRGLSVDGR 88 Query: 157 VDSSTLEAM 165 V + T A+ Sbjct: 89 VGAETWRAL 97 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 35/109 (32%), Gaps = 21/109 (19%) Query: 76 AQTEKAIAFYQD--------ILSRGGWPELPIRPLHLGNS-----------SVSVQRLRE 116 AQTE+A+ +Q + W L G V+ L+E Sbjct: 68 AQTERAVRAFQQSRGLSVDGRVGAETWRALDAARWRFGARALYHAVPEPLTGEDVRSLQE 127 Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 RL+ G + AV FQ GL P G T+ A+ Sbjct: 128 RLLEMGY--DVGRADAIYGIRTSRAVAQFQREMGLKPDGSCGPHTVNAL 174 >gi|119512142|ref|ZP_01631234.1| Peptidoglycan-binding domain 1 [Nodularia spumigena CCY9414] gi|119463232|gb|EAW44177.1| Peptidoglycan-binding domain 1 [Nodularia spumigena CCY9414] Length = 407 Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ SV+ L+E+L +G ++ +D E AV+ FQ HGL G+V ST Sbjct: 66 LERGDQGPSVKNLQEQLQQAGFY--QAPITEVYDFSTEDAVRRFQQAHGLAVDGIVGVST 123 Query: 162 LEAMNVPVDLRIRQ 175 + + +I+Q Sbjct: 124 RQKLETSPTPQIKQ 137 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ S +V+ L+ERL ++G + F E A+K FQ + LD G+ +T Sbjct: 202 LQKGDESEAVRILQERLRVAGFFSGQA--TGVFGPVTEDALKAFQQAYELDVDGIAGPAT 259 Query: 162 LEAM 165 L + Sbjct: 260 LRKL 263 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + L G+ +V+ L++ LI +G + S FD+ +AV FQ + L S Sbjct: 277 QAVSTDNLTRGHQGEAVKLLQQHLIQAGYFKGTP--SGYFDSSTAAAVSQFQAANYLAVS 334 Query: 155 GMVDSSTLEAM 165 G+ +T + Sbjct: 335 GIAGPTTRAKL 345 >gi|317126727|ref|YP_004100839.1| cell wall hydrolase/autolysin [Intrasporangium calvum DSM 43043] gi|315590815|gb|ADU50112.1| cell wall hydrolase/autolysin [Intrasporangium calvum DSM 43043] Length = 418 Score = 74.9 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 6/72 (8%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGL------SVAFDAYVESAVKLFQMRHGLDPSG 155 L G+S +V + RL+++GDL S + FD VE AVK FQ R GL G Sbjct: 9 LRRGDSGPAVADVCARLLLTGDLPASWAERGVPRGTAVFDETVEEAVKSFQQRRGLLVDG 68 Query: 156 MVDSSTLEAMNV 167 +V ST ++ Sbjct: 69 VVGRSTYSVLDG 80 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 V RL+ RL+ G + ++A++ FQ GL P G + TL A Sbjct: 100 GDDVVRLQARLLELGFTPG--KVDGIHGPATDAALRSFQAAVGLTPDGTLGPETLRA 154 >gi|257057905|ref|YP_003135737.1| N-acetylmuramoyl-L-alanine amidase [Saccharomonospora viridis DSM 43017] gi|256587777|gb|ACU98910.1| N-acetylmuramoyl-L-alanine amidase [Saccharomonospora viridis DSM 43017] Length = 382 Score = 74.9 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSG 155 +R L G++ V +R L L PS+ G + FD VE AV+ FQ + GL G Sbjct: 1 MRVLRRGDTGPEVAEIRSMLSALDLLPPSEEANGHAAFFDQQVEHAVRAFQQQRGLITDG 60 Query: 156 MVDSSTLEAMNVP 168 +V +T A+ Sbjct: 61 VVGPATYRALRGS 73 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 9/95 (9%) Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSV----SVQRLRERLIISGDLDPSKGLSVAFDAYV 138 A Y+ + RG L RPL SS V L+ERL G + F Sbjct: 65 ATYRAL--RGSTYHLGSRPLAYSVSSPVHGDDVFALQERLTELGY--DAGRPDGGFGPQT 120 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLR 172 E A+K FQ +GL G+ +T+ A+ + R Sbjct: 121 ERALKNFQRDYGLVVDGICGPATVRALRQLSPRAR 155 >gi|119486095|ref|ZP_01620157.1| Peptidoglycan-binding domain 1 protein [Lyngbya sp. PCC 8106] gi|119456870|gb|EAW37998.1| Peptidoglycan-binding domain 1 protein [Lyngbya sp. PCC 8106] Length = 225 Score = 74.9 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 12/176 (6%) Query: 4 YLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGI 63 Y KI K FF+ + +G++ + +++ FD + + Sbjct: 34 YRKIYKFFSMFFLITAILLGVNAAFALQQGNRGIKVVELQKKLHKIGYFDGQITGYYGTL 93 Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP------LHLGNSSVSVQRLRER 117 + + T T IA Y+ + + G + + L LG+S V L++ Sbjct: 94 TQNAVSQFQATNGLTVDGIAGYKTLAALGLSEAITTQTSQHTSLLKLGSSGSLVIELQQH 153 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM----NVPV 169 L + G D ++ +D + AV LFQM GL G+V T A+ N P Sbjct: 154 LQVLGYYDG--LMTGYYDLSTQQAVILFQMDVGLKSDGIVGPLTQAAIESQFNSPP 207 >gi|300791154|ref|YP_003771445.1| N-acetylmuramoyl-L-alanine amidase [Amycolatopsis mediterranei U32] gi|299800668|gb|ADJ51043.1| N-acetylmuramoyl-L-alanine amidase [Amycolatopsis mediterranei U32] Length = 382 Score = 74.5 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV--AFDAYVESAVKLFQMRHGLDPSGM 156 +R L G++ V +R L L P G FD VE AV+ FQ R GL G+ Sbjct: 1 MRVLRRGDAGPDVAEIRSILAGMDLLPPVTGTDDYDTFDVAVEHAVRAFQQRRGLMTDGI 60 Query: 157 VDSSTLEAM 165 V +T +A+ Sbjct: 61 VGPATFQAL 69 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 14/109 (12%) Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLD 125 Q + + I+ + L HLG+ V L+ERL G Sbjct: 50 QQRRGLMT-DGIVGPATFQALKGASYHLGSRPLSYMIASPVHGDDVFTLQERLTELGF-- 106 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 + F E A+K FQ L P GM +T+ ++ R R Sbjct: 107 DAGRPDGYFGPQTERALKTFQRDMRLTPDGMCGPATIRELHRLSSPRAR 155 >gi|315506955|ref|YP_004085842.1| cell wall hydrolase/autolysin [Micromonospora sp. L5] gi|315413574|gb|ADU11691.1| cell wall hydrolase/autolysin [Micromonospora sp. L5] Length = 386 Score = 74.5 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +RP+ G+ +V +R L L G +DA E AV+ FQ GL G V Sbjct: 1 MRPIRPGDQGPAVAEIRTVLAGLELLPAEAGGDD-YDAQTERAVRAFQQSRGLSVDGRVG 59 Query: 159 SSTLEAM 165 + T A+ Sbjct: 60 AETWRAL 66 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 35/109 (32%), Gaps = 21/109 (19%) Query: 76 AQTEKAIAFYQD--------ILSRGGWPELPIRPLHLGNS-----------SVSVQRLRE 116 AQTE+A+ +Q + W L G V+ L+E Sbjct: 37 AQTERAVRAFQQSRGLSVDGRVGAETWRALDAARWRFGARALYHAVPEPLTGEDVRSLQE 96 Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 RL+ G + AV FQ GL P G T+ A+ Sbjct: 97 RLLEMGY--DVGRADAIYGIRTSRAVAQFQREMGLKPDGSCGPHTVNAL 143 >gi|134103806|ref|YP_001109467.1| N-acetylmuramoyl-L-alanine amidase [Saccharopolyspora erythraea NRRL 2338] gi|291005736|ref|ZP_06563709.1| N-acetylmuramoyl-L-alanine amidase [Saccharopolyspora erythraea NRRL 2338] gi|133916429|emb|CAM06542.1| N-acetylmuramoyl-L-alanine amidase [Saccharopolyspora erythraea NRRL 2338] Length = 383 Score = 74.5 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKG--LSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 LH G+ +V +R L G L G +DA VE AV++FQ + GL G+V Sbjct: 4 LHRGDVGPAVAEIRNTLAALGLLPAPNGRPDPATYDAAVEHAVRVFQQQRGLITDGVVGP 63 Query: 160 STLEAM 165 +T A+ Sbjct: 64 ATYRAL 69 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S V L+ERL+ G + F E A++ FQ +GL+P G+ TL A+ Sbjct: 90 SGDDVFALQERLLELGY--DAGRPDGIFGHETEQALRSFQRDYGLNPDGICGPGTLRAL 146 >gi|184201995|ref|YP_001856202.1| putative N-acetylmuramoyl-L-alanine amidase [Kocuria rhizophila DC2201] gi|183582225|dbj|BAG30696.1| putative N-acetylmuramoyl-L-alanine amidase [Kocuria rhizophila DC2201] Length = 411 Score = 74.5 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPS-----KGLSVAFDAYVESAVKLFQMRHGLD 152 P L G + V LRERL+ +G D + FD V+ AV+ FQ R GL Sbjct: 6 PGAALRHGMTDRRVAGLRERLVRAGADDAALSPDAATDPTVFDQRVDGAVRGFQQRKGLI 65 Query: 153 PSGMVDSSTLEAMN 166 G+V T A+N Sbjct: 66 VDGVVGPDTESALN 79 Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 2/60 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V+ L+ L + G L F E AVK Q G+ G+V TL + Sbjct: 98 MHGDDVEELQNNLSLLGFY--YGHLDGTFARQTEYAVKELQSSLGVPEDGVVGLDTLTGL 155 >gi|294139659|ref|YP_003555637.1| LysM domain-containing protein [Shewanella violacea DSS12] gi|293326128|dbj|BAJ00859.1| LysM domain protein [Shewanella violacea DSS12] Length = 307 Score = 74.1 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 41/190 (21%) Query: 186 LLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + + +++N+P L +NGK V +GRV R+TP + ++I + NP W Sbjct: 84 MLLPDVPRKGIVLNLPELRLYYFSKNGKQVHVFPVGIGRVGRETPEMVTKIKARIPNPSW 143 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P SI +K+ + E+ V G Sbjct: 144 TPPASI-RKEHLER--------------------GEILPPVV--------------AAGP 168 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + + ++ + +Y +H T + F +R +SGCVR+ N D++ + Sbjct: 169 DNPLGNYAMQLSYGDGSYLIHGTNKD--FGIGMR-VSSGCVRL-NPDDIEWLFNQTKYGD 224 Query: 364 SRYHIEEVVK 373 I + VK Sbjct: 225 PVRVINQTVK 234 >gi|238061899|ref|ZP_04606608.1| cell wall hydrolase/autolysin [Micromonospora sp. ATCC 39149] gi|237883710|gb|EEP72538.1| cell wall hydrolase/autolysin [Micromonospora sp. ATCC 39149] Length = 388 Score = 74.1 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 30/67 (44%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +RP+ G+ +V +R L L P + FD E AV+ FQ GL G V Sbjct: 1 MRPIRTGDRGPAVSEIRAVLTGLDLLTPGSSAADEFDTETERAVRAFQQSRGLSVDGRVG 60 Query: 159 SSTLEAM 165 + T A+ Sbjct: 61 AETWRAL 67 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 25/83 (30%), Gaps = 13/83 (15%) Query: 94 WPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 W L LG V+ L+ERL+ G + AV Sbjct: 64 WRALDAARWRLGARTLYHAVPEPLTGEDVRSLQERLLEMGY--DVGRADAVYGVRTSRAV 121 Query: 143 KLFQMRHGLDPSGMVDSSTLEAM 165 FQ GL P G T+ + Sbjct: 122 AQFQREMGLKPDGSCGPHTMRVL 144 >gi|333008911|gb|EGK28371.1| peptidoglycan-binding domain 1 domain protein [Shigella flexneri K-272] gi|333020221|gb|EGK39491.1| peptidoglycan-binding domain 1 domain protein [Shigella flexneri K-227] Length = 74 Score = 73.7 bits (180), Expect = 6e-11, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 26/54 (48%) Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 W+ I + +K T V + +PV+ Y++A+ D Q+R DIY D Sbjct: 3 DAGWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADDRTQYRTDIYNYD 56 >gi|284043195|ref|YP_003393535.1| glycoside hydrolase family 24 [Conexibacter woesei DSM 14684] gi|283947416|gb|ADB50160.1| glycoside hydrolase family 24 [Conexibacter woesei DSM 14684] Length = 391 Score = 73.3 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 5/95 (5%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 S + + + +A + +L R L RPL G + V+ +R L ++G +D + Sbjct: 112 SATALQRVARRLARPRTVLER-----LRARPLRRGAKTPDVKTVRTYLELAGLVDRDRTR 166 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + AV+ FQ R GL G+V T A+ Sbjct: 167 RDEYGEPLALAVRAFQRRVGLTEDGLVGPKTFAAL 201 >gi|332968887|gb|EGK07934.1| ErfK/YbiS/YcfS/YnhG family protein [Kingella kingae ATCC 23330] Length = 305 Score = 72.9 bits (178), Expect = 8e-11, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 70/238 (29%), Gaps = 71/238 (29%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 +YV++N+P L NG++ V VG+ QT + RI FNP W IP Sbjct: 30 APDAEGQYVVINVPQQRLFLYNNGRLQKVYPVAVGKAMTQTNLGEHRIGAKAFNPTWHIP 89 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI ++ G + PG N Sbjct: 90 LSIQRE---------------------RGDGVKTVP------------------PGPSNP 110 Query: 308 MASTKIEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 + + +H T P +V + GCVR+++ L Sbjct: 111 LGPVFVRMGDPKLGLGIHGTSNPG---SVPGVASHGCVRMKSPDAL-------------- 153 Query: 367 HIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF----RDDIYGLDNVHVGII 420 ++T T V Y A +D D Y +N+ V + Sbjct: 154 EFARTIRTGSTALVS----------YEMAALNQDGAGNLWLAAFKDPYRKNNLRVNAL 201 >gi|75907183|ref|YP_321479.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75700908|gb|ABA20584.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 575 Score = 72.9 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L G+ + V L+++L SG + + F + E+AVK FQ +GL Sbjct: 48 WCLPAAAALKKGHRNPQVASLQQKLRASGYFSQAA--TGYFGSVTEAAVKRFQEANGLKA 105 Query: 154 SGMVDSSTLEAM 165 G+V ++TL A+ Sbjct: 106 DGIVGAATLAAL 117 Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 76/228 (33%), Gaps = 60/228 (26%) Query: 95 PELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P + L G+ S V L+E+L G + ++ FD ++AV FQ + L Sbjct: 131 PPIAASKSSLKRGDISDRVMSLQEKLQADGYYQGA--ITGNFDTATQAAVIQFQQANRLV 188 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMR---IKKLLEQKMGLRYVLVNI--------- 200 G+V T + R+L +L + ++ L ++ V I Sbjct: 189 ADGIVGPKTSSVLASST----RKLAASLPQKTTLEPFLTEQPQKPQNQVKIAPQSAAPPS 244 Query: 201 PAASLEAVENGKVGLRSTVIVGRVDRQTPILHSR----INRIMFNPYWVIPRSIIQKDMM 256 P+ + + I G++ ++ + +M+N +I D Sbjct: 245 PSQKMRLI---------KTISGKISPKSVVYSGNGLFFAQNMMYN------HTITVYD-- 287 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF--IFRQDP 302 N ++ +V +EVD + F +R P Sbjct: 288 ------------RNYELV-----KVIPDEVDLSKYGHSRFKGKYRGAP 318 >gi|17230433|ref|NP_486981.1| hypothetical protein all2941 [Nostoc sp. PCC 7120] gi|17132035|dbj|BAB74640.1| all2941 [Nostoc sp. PCC 7120] Length = 572 Score = 72.9 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L G+ + V L+++L SG + F + E+AVK FQ +GL Sbjct: 51 PTVAA--LKKGHRNPQVASLQQKLRASGYFPQVA--TGYFGSVTEAAVKRFQQANGLKAD 106 Query: 155 GMVDSSTLEAM 165 G+V ++TL A+ Sbjct: 107 GIVGAATLAAL 117 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 74/225 (32%), Gaps = 57/225 (25%) Query: 95 PELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P++ L G+ S V L+E+L G + ++ FDA ++AV FQ + L Sbjct: 131 PQIATSKSSLKQGDISDRVMSLQEKLQADGYYQGA--ITGNFDAATQAAVIQFQQANRLV 188 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI---------PAA 203 G+V T + R+L +L + L V I P+ Sbjct: 189 VDGIVGPQTSSVLASST----RKLAASLPQKTTLEPFLTQQPQNQVKISPQSAAPPSPSQ 244 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSR----INRIMFNPYWVIPRSIIQKDMMALL 259 + + I G++ ++ + +M+N +I D Sbjct: 245 KMRLI---------KTISGKISPKSVVYSGNGLFFAQNMMYN------HTITVYD----- 284 Query: 260 RQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF--IFRQDP 302 N ++ +V +EVD + F +R P Sbjct: 285 ---------RNYELV-----KVIPDEVDLSKYGHSRFKGKYRGAP 315 >gi|295703171|ref|YP_003596246.1| N-acetylmuramoyl-L-alanine amidase [Bacillus megaterium DSM 319] gi|294800830|gb|ADF37896.1| N-acetylmuramoyl-L-alanine amidase cwlL (Cell wall hydrolase) (Autolysin) [Bacillus megaterium DSM 319] Length = 281 Score = 72.6 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 13/166 (7%) Query: 7 INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSD 66 N+ L + G IH + I + S +D + + + Sbjct: 25 GNRWL------GLNARGTYGTTYAIHGNNNPASIGKYVSSGCVRMYDEEVEWLFSKVTVG 78 Query: 67 IPII---SKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISG 122 P++ S ++ A Y + G P L G+ +V+ L+++L G Sbjct: 79 TPVVITTSSKSFNDI-AAANGYNVSGNSGSAPAPSTGTVLKKGSKGNAVKELQQKLTSLG 137 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 +KG F A +SAV+ FQ HGL G+V ST +A+ Sbjct: 138 Y--NTKGTDGVFGANTDSAVRKFQKDHGLTADGIVGPSTYKALGSS 181 Score = 65.2 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ +VQ L+++L G +KG F A ESAV+ FQ + L G+ Sbjct: 215 QTLKKGSKGSNVQALQKKLTALGY--DTKGTDGIFGANTESAVRNFQKDNKLAADGIAGP 272 Query: 160 STLEAM 165 +TL A+ Sbjct: 273 NTLAAI 278 >gi|118620070|ref|YP_908402.1| hydrolase [Mycobacterium ulcerans Agy99] gi|118572180|gb|ABL06931.1| hydrolase [Mycobacterium ulcerans Agy99] Length = 406 Score = 72.6 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 8/73 (10%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLD-PSKGLSV-------AFDAYVESAVKLFQMRHGLD 152 L G+ S +V +R L G LD P + LS FD ++ AV+ FQ GL Sbjct: 11 TLRCGDRSAAVAEIRAALAALGMLDNPDEDLSTGRHIALELFDPELDHAVRAFQQHRGLL 70 Query: 153 PSGMVDSSTLEAM 165 G+V +T A+ Sbjct: 71 VDGIVGEATYRAL 83 Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 14/148 (9%) Query: 19 ILPMGLSLVEKPIHASVLDEIIN-ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 L +++ P I E + ++ F + +D I+ + T Sbjct: 26 AALAALGMLDNPDEDLSTGRHIALELFDPELDHAVRAFQQHRGLLVDG---IVGEATYRA 82 Query: 78 TEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 +A Y+ + +R + + PL G+ V L+ RL G + F Sbjct: 83 LREA--SYR-LGARTLYHQFGA-PL-YGD---DVATLQARLQDLGFYTG--LVDGYFGLQ 132 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +A+ +Q +G+ G+ TL ++ Sbjct: 133 THNALMSYQREYGMSADGICGPETLRSL 160 >gi|183985449|ref|YP_001853740.1| hydrolase [Mycobacterium marinum M] gi|183178775|gb|ACC43885.1| hydrolase [Mycobacterium marinum M] Length = 406 Score = 72.6 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 8/73 (10%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLD-PSKGLSV-------AFDAYVESAVKLFQMRHGLD 152 L G+ S +V +R L G LD P + LS FD ++ AV+ FQ GL Sbjct: 11 TLRCGDRSAAVAEIRAALAALGMLDNPDEDLSTGRHIALELFDPELDHAVRAFQQHRGLL 70 Query: 153 PSGMVDSSTLEAM 165 G+V +T A+ Sbjct: 71 VDGIVGEATYRAL 83 Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 14/148 (9%) Query: 19 ILPMGLSLVEKPIHASVLDEIIN-ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 L +++ P I E + ++ F + +D I+ + T Sbjct: 26 AALAALGMLDNPDEDLSTGRHIALELFDPELDHAVRAFQQHRGLLVDG---IVGEATYRA 82 Query: 78 TEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 +A Y+ + +R + + PL G+ V L+ RL G + F Sbjct: 83 LREA--SYR-LGARTLYHQFGA-PL-YGD---DVATLQARLQDLGFYTG--LVDGYFGLQ 132 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +A+ +Q +G+ G+ TL ++ Sbjct: 133 THNALMSYQREYGMSADGICGPETLRSL 160 >gi|78223666|ref|YP_385413.1| peptidoglycan-binding LysM:ErfK/YbiS/YcfS/YnhG [Geobacter metallireducens GS-15] gi|78194921|gb|ABB32688.1| Peptidoglycan-binding LysM:ErfK/YbiS/YcfS/YnhG [Geobacter metallireducens GS-15] Length = 293 Score = 72.6 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 56/268 (20%), Positives = 94/268 (35%), Gaps = 85/268 (31%) Query: 162 LEAMN-VPVDL--RIRQ-LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 L +N + R Q L+V+ ++++ +++ +++NIP +L NG+V Sbjct: 52 LAQLNRIDPQKPLRAGQVLRVDT---RRIVPRQIDDG-IVINIPDRTLYYFRNGEVDRVL 107 Query: 218 TVIVGRV---------DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 +V VG+ D TP + RI + +P W +P SI +K+M Sbjct: 108 SVAVGKPKPVNDPEKRDWHTPTGNFRIIGKVKDPTWRVPPSI-RKEM------------- 153 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST--KIEFYSRNNTYMHDT 326 E+GKEV PGK N + K +H T Sbjct: 154 ------KERGKEVKTIV---------------PPGKKNPLGKYALKTSIP---GILIHST 189 Query: 327 PEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 P +V F + GC+RV P + V T +TT + V Sbjct: 190 NAP---ESVYSFSSHGCIRV-------------FPEFMEDFFNSV--TEETTGEIIYEPV 231 Query: 387 PVHFVYISAWSPKDSII--QFRDDIYGL 412 ++ + + + DIY Sbjct: 232 K-----MTV---AEGQVFLEVHRDIYNR 251 >gi|294497796|ref|YP_003561496.1| putative peptidoglycan binding domain-containing protein [Bacillus megaterium QM B1551] gi|294347733|gb|ADE68062.1| Putative peptidoglycan binding domain protein [Bacillus megaterium QM B1551] Length = 354 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 13/166 (7%) Query: 7 INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSD 66 N+ L + G IH + I + S +D + + + Sbjct: 102 GNRWL------GLNARGTYGTTYAIHGNNNPASIGKYVSSGCVRMYDEEVEWLFSKVTVG 155 Query: 67 IPII---SKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISG 122 P++ S ++ A Y + G P L G+ +V+ L+++L G Sbjct: 156 TPVVITTSSKSFNDI-AAANGYNVSGNSGSTPAPSTGTVLKKGSKGNAVKELQQKLTSLG 214 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++G F A +SAV+ FQ HGL G+V ST +A+ Sbjct: 215 Y--NTQGTDGVFGANTDSAVRKFQKDHGLTADGIVGPSTYKALGSS 258 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ +VQ L+++L G +KG F A E+AV+ FQ + L G+ Sbjct: 288 QTLKKGSKGSNVQALQKKLTAIGY--NTKGTDGIFGANTEAAVRNFQKDNKLAADGIAGP 345 Query: 160 STLEAM 165 +TL A+ Sbjct: 346 NTLTAI 351 >gi|254818669|ref|ZP_05223670.1| putative N-acetylmuramoyl-L-alanine amidase [Mycobacterium intracellulare ATCC 13950] Length = 407 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 9/73 (12%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA---------FDAYVESAVKLFQMRHGLD 152 L G+ S +V +R L G LD S + FDA ++ AV+ FQ GL Sbjct: 12 LRCGDRSAAVTEIRATLASLGMLDGSDDEDLTTGRHVALELFDAELDQAVRAFQQHRGLL 71 Query: 153 PSGMVDSSTLEAM 165 G+V +T A+ Sbjct: 72 VDGIVGEATYRAL 84 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 22/94 (23%) Query: 83 AFYQDILSRGGWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLDPSKGLS 131 A Y+ + LG V L+ RL G + Sbjct: 79 ATYRALKEA---------SYRLGARTLYHQFGAPLFGDDVATLQARLQDLGFYTG--LVD 127 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F +A+ +Q +GL G+ TL ++ Sbjct: 128 GYFGLQTHNALMSYQREYGLSADGICGPETLRSL 161 >gi|254507501|ref|ZP_05119635.1| general secretion pathway protein A [Vibrio parahaemolyticus 16] gi|219549571|gb|EED26562.1| general secretion pathway protein A [Vibrio parahaemolyticus 16] Length = 490 Score = 72.2 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 7/81 (8%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 Y+ I W + L G V L L + L + S +D+ ++ VKL Sbjct: 399 YRQI-----WRKYWGGSLKPGMQGEPVALLDRHLSML--LGKPRTGSDRYDSALQEKVKL 451 Query: 145 FQMRHGLDPSGMVDSSTLEAM 165 FQ GL G+ +TL+ + Sbjct: 452 FQRWQGLSVDGIAGKNTLQRL 472 >gi|157960797|ref|YP_001500831.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella pealeana ATCC 700345] gi|157845797|gb|ABV86296.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella pealeana ATCC 700345] Length = 303 Score = 72.2 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 41/173 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + + V++N+ L + GK V +GRV R+TP + +RI + NP W Sbjct: 84 MLLPDVPHKGVVINLAELRLYYFPKGGKEVHVFPVGIGRVGRETPEMVTRIKSRIPNPSW 143 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P SI +K+ +L++ EV V G Sbjct: 144 TPPASI-RKE----------HLEERG---------EVLPRVV--------------PAGP 169 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 N + I+ + +Y +H T + F +R ++GC+R+ N D+ WL Sbjct: 170 ENPLGKFAIQLSYGDGSYLIHGTNKD--FGIGMR-VSAGCIRL-NPDDI-EWL 217 >gi|332970134|gb|EGK09128.1| zinc D-Ala-D-Ala carboxypeptidase [Desmospora sp. 8437] Length = 243 Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 7/81 (8%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLF 145 + GW R L G+S V+ L+ R+ PS+ + F E+AVK F Sbjct: 30 VDAYGW----SRTLKQGDSGADVRELQIRVAGWAADSPSRTYVAVDGVFGPGTEAAVKRF 85 Query: 146 QMRHGLDPSGMVDSSTLEAMN 166 Q +GL P G+V +T A+N Sbjct: 86 QRAYGLSPDGVVGPATQSALN 106 >gi|127511939|ref|YP_001093136.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella loihica PV-4] gi|126637234|gb|ABO22877.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella loihica PV-4] Length = 313 Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 75/190 (39%), Gaps = 40/190 (21%) Query: 186 LLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + + +++N+P L +NG+ V +GR+ R+TP + ++I + NP W Sbjct: 84 MLLPDVPRKGIVINLPELRLYYFPKNGREVHVFPVGIGRIGRETPEMTTKIKARIPNPSW 143 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P S+ + +L++ EV V G Sbjct: 144 TPPASLRAE-----------HLRERG---------EVLPPVV--------------PAGP 169 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + ++ + +Y +H T + F +R ++GC+R+ N D++ + Sbjct: 170 DNPLGKYAMQLSYGDGSYLIHGTNKD--FGIGMR-VSAGCIRL-NPDDIEWLFHQAKYGD 225 Query: 364 SRYHIEEVVK 373 S I + VK Sbjct: 226 SVRVINQTVK 235 >gi|167622954|ref|YP_001673248.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella halifaxensis HAW-EB4] gi|167352976|gb|ABZ75589.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella halifaxensis HAW-EB4] Length = 299 Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 69/185 (37%), Gaps = 41/185 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + + +++N+ L + GK V +GRV R+TP + ++I + NP W Sbjct: 84 MLLPDVPHKGIVINLAELRLYYFPKGGKEVHVFPVGIGRVGRETPEMVTKIKSRIPNPSW 143 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P SI +KD +L++ G Sbjct: 144 TPPASI-RKD----------HLEERG-----------------------EELPRVVPAGP 169 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + I+ + +Y +H T + F +R ++GC+R+ N D+ WL Sbjct: 170 DNPLGKFAIQLSYGDGSYLIHGTNKD--FGIGMR-VSAGCIRL-NPDDI-EWLFDKVKYG 224 Query: 364 SRYHI 368 R I Sbjct: 225 ERVTI 229 >gi|295694715|ref|YP_003587953.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus tusciae DSM 2912] gi|295410317|gb|ADG04809.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus tusciae DSM 2912] Length = 276 Score = 71.4 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 20/140 (14%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 V ++ RL + G L G + AV FQ GL G+V +T Sbjct: 12 TPYMRGPDVIAVQRRLTVFGRLSSWDG---IYGPVTARAVAEFQRASGLLSDGIVGPATW 68 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 A+ + +++ G ++ ++ L + ++ V VG Sbjct: 69 VALGI-------------EQVEW----GGGQFHIAIDTERRVLSLFQRDRLIRSFPVAVG 111 Query: 223 RVDRQTPILHSRINRIMFNP 242 + TP+ I + NP Sbjct: 112 KPTTPTPVGDWVIVEKIANP 131 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 97 LPIRPLHLGNS-SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L R LH+G + + +++ L + G F ++AV+ FQ L G Sbjct: 196 LTTRLLHMGVTPGDDIAQVQRMLQVLGFYRG--DTDGIFGRITDTAVRAFQQSAQLTVDG 253 Query: 156 MVDSST 161 +V T Sbjct: 254 IVGPRT 259 >gi|150389053|ref|YP_001319102.1| ErfK/YbiS/YcfS/YnhG family protein [Alkaliphilus metalliredigens QYMF] gi|149948915|gb|ABR47443.1| ErfK/YbiS/YcfS/YnhG family protein [Alkaliphilus metalliredigens QYMF] Length = 280 Score = 71.4 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 16/144 (11%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +R + V ++ERL+ G D + +D + AV+ +Q +G+ P G+V Sbjct: 8 LRLVEPYMEGPDVMHIQERLVEIGFYDGE--IDGIYDEGLFEAVRTYQTEYGITPDGIVG 65 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 T ++ + D+ +++ + +++ L + ++ Sbjct: 66 PDTWNSIGLSPDV--------------MVDLPTEGYAIDIDLEQRILTLKQYTEILQSYP 111 Query: 219 VIVGRVDRQTPILHSRINRIMFNP 242 V VG+ TP RI + NP Sbjct: 112 VAVGKPQTPTPPGDWRIIQKTLNP 135 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + ++ L G + + + +D AV+ FQ + G+V T + + Sbjct: 213 ADILDVKNILATLGYYEGE--IDMIYDEETMEAVRNFQRDFNIIADGVVGVDTYNKLQLA 270 Query: 169 VDL 171 ++ Sbjct: 271 IEQ 273 >gi|212633981|ref|YP_002310506.1| LysM domain-containing protein [Shewanella piezotolerans WP3] gi|212555465|gb|ACJ27919.1| LysM domain protein [Shewanella piezotolerans WP3] Length = 260 Score = 71.4 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 40/190 (21%) Query: 186 LLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + + V++N+ L + G+ V +GR+ R+TP + +RI + NP W Sbjct: 45 MLLPDVPHKGVVINLAELRLYYFPKGGQEVHVFPVGIGRIGRETPEMVTRIKSRIPNPSW 104 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P SI +K+ +L++ G Sbjct: 105 TPPASI-RKE----------HLEERG-----------------------EELPRVVLAGP 130 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + I+ + +Y +H T + F +R ++GC+R+ N D++ + Sbjct: 131 DNPLGKYAIQLSYGDGSYLIHGTNKD--FGIGMR-VSAGCIRL-NPDDIEWLFNEVKYGD 186 Query: 364 SRYHIEEVVK 373 S I + VK Sbjct: 187 SVTVINQTVK 196 >gi|108802363|ref|YP_642560.1| peptidoglycan binding domain-containing protein [Mycobacterium sp. MCS] gi|119871516|ref|YP_941468.1| peptidoglycan binding domain-containing protein [Mycobacterium sp. KMS] gi|126438343|ref|YP_001074034.1| peptidoglycan binding domain-containing protein [Mycobacterium sp. JLS] gi|108772782|gb|ABG11504.1| Peptidoglycan-binding domain 1 [Mycobacterium sp. MCS] gi|119697605|gb|ABL94678.1| Peptidoglycan-binding domain 1 protein [Mycobacterium sp. KMS] gi|126238143|gb|ABO01544.1| Peptidoglycan-binding domain 1 protein [Mycobacterium sp. JLS] Length = 398 Score = 71.4 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGL--------SVAFDAYVESAVKLFQMRHG 150 + L G+ +V +R L G LD + FD +++ AV+ FQ G Sbjct: 1 MSSLRHGDRGAAVTEIRAALSALGLLDSPDDDLTTGRHVVADLFDDHLDQAVRAFQQHRG 60 Query: 151 LDPSGMVDSSTLEAM 165 L G+V +T A+ Sbjct: 61 LLVDGIVGEATYRAL 75 Score = 46.8 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 18/150 (12%) Query: 19 ILPMGLSLVEKPIHASVLDE-IINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 L L++ P ++ + + ++ F + +D I+ + T Sbjct: 18 AALSALGLLDSPDDDLTTGRHVVADLFDDHLDQAVRAFQQHRGLLVDG---IVGEATYRA 74 Query: 78 TEKAIAFY--QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 ++A + ++ + G P V L+ RL G + F Sbjct: 75 LKEASYRLGARTLMHQFGAP----------MYGDDVATLQARLQDLGFYTG--LVDGHFG 122 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + +Q +GL P G+ TL ++ Sbjct: 123 LQTHHGLTSYQREYGLYPDGICGPETLRSL 152 >gi|146282381|ref|YP_001172534.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas stutzeri A1501] gi|145570586|gb|ABP79692.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas stutzeri A1501] Length = 451 Score = 71.0 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 45/182 (24%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++NI + GK V + +GR +P+ +RI + NP Sbjct: 219 RFILPPGPREG-IVINIAEYRMYYYPEGKNVVHTFPLGIGREGWGSPVGTARITAMTSNP 277 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P+SI +++ ++ + P Sbjct: 278 AWYPPKSI-REE----------------------------------HAADGDPLPTVVPP 302 Query: 303 GKINAMASTKIEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKD 359 G N + K+ H + + F +R + GC R+ N+++L + Sbjct: 303 GPDNPLGPYKMSLSLPGYLI--HGSNKK--FGIGMR-VSHGCFRMLNHNVLELAKMVKVG 357 Query: 360 TP 361 TP Sbjct: 358 TP 359 >gi|120406998|ref|YP_956827.1| peptidoglycan binding domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119959816|gb|ABM16821.1| Peptidoglycan-binding domain 1 protein [Mycobacterium vanbaalenii PYR-1] Length = 395 Score = 71.0 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 9/89 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGL--------SVAFDAYVESAVKLFQMRHG 150 + L G+ +V +R L G +D + FD ++ AV+ FQ G Sbjct: 1 MSSLRRGDRGGAVAEIRAALSALGMIDSPDEDLTTGKHVAADMFDDDLDHAVRAFQQHRG 60 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 L G+V +T A+ R+ +N Sbjct: 61 LLVDGIVGEATYRAL-KEASYRLGARTLN 88 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 50/151 (33%), Gaps = 20/151 (13%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT 78 L +++ P DE + H + D FD+ L ++ + + Sbjct: 18 AALSALGMIDSP------DEDLTTGKH-VAADMFDDDLDHAVRAFQQHRGLLVDGIVGE- 69 Query: 79 EKAIAFYQDILSRGGWPELPIRPL--HLG--NSSVSVQRLRERLIISGDLDPSKGLSVAF 134 A Y+ + L R L G V L+ RL G + F Sbjct: 70 ----ATYRALKEAS--YRLGARTLNHQFGAPMYGDDVATLQSRLQDLGFYTG--LVDGHF 121 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +A+ +Q +GL P G+ TL ++ Sbjct: 122 GLQTHNALSSYQREYGLYPDGICGPETLRSL 152 >gi|240168399|ref|ZP_04747058.1| hydrolase [Mycobacterium kansasii ATCC 12478] Length = 406 Score = 71.0 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 8/72 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLS--------VAFDAYVESAVKLFQMRHGLDP 153 L G+ S +V +R L G LD FDA ++ AV+ FQ GL Sbjct: 12 LRCGDRSAAVTEIRAALAALGMLDNPDEDLITGRHIALEVFDAELDQAVRAFQQHRGLLV 71 Query: 154 SGMVDSSTLEAM 165 G+V +T A+ Sbjct: 72 DGIVGEATYRAL 83 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 14/148 (9%) Query: 19 ILPMGLSLVEKPIHASVLDEIIN-ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 L +++ P + I E + + ++ F + +D I+ + T Sbjct: 26 AALAALGMLDNPDEDLITGRHIALEVFDAELDQAVRAFQQHRGLLVDG---IVGEATYRA 82 Query: 78 TEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 ++A Y+ + +R + + PL G+ V L+ RL G + F Sbjct: 83 LKEA--SYR-LGARTLYHQFGA-PL-YGD---DVATLQARLQDLGFYTG--LVDGYFGLQ 132 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +A+ +Q +GL P G+ TL ++ Sbjct: 133 THNALMSYQREYGLAPDGICGPETLRSL 160 >gi|325267376|ref|ZP_08134037.1| ErfK/YbiS/YcfS/YnhG family protein [Kingella denitrificans ATCC 33394] gi|324981171|gb|EGC16822.1| ErfK/YbiS/YcfS/YnhG family protein [Kingella denitrificans ATCC 33394] Length = 363 Score = 71.0 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 69/232 (29%), Gaps = 71/232 (30%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +YV++NIP L NG++ V VG+ QT + RI FNP W IP SI ++ Sbjct: 78 QYVVINIPQQRLFLYNNGRLQKVYPVAVGKAMTQTTLGEHRIGAKAFNPTWHIPLSIQRE 137 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + PG N + + Sbjct: 138 ---------------------RGDGVKSVP------------------PGPRNPLGPVFV 158 Query: 314 EFYSRN-NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P +V + GCVR+++ L + Sbjct: 159 RLGEPRLGLGIHGTSNPG---SVPGVASHGCVRMKSPDAL--------------EFARTI 201 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSI----IQFRDDIYGLDNVHVGII 420 + T V Y A +D + D Y N+ V + Sbjct: 202 TSGTT----------VMVSYEMAALNQDGAGNLWLAVFRDPYNKRNLRVDAL 243 >gi|323499427|ref|ZP_08104399.1| general secretion pathway protein A [Vibrio sinaloensis DSM 21326] gi|323315483|gb|EGA68522.1| general secretion pathway protein A [Vibrio sinaloensis DSM 21326] Length = 536 Score = 71.0 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 13/90 (14%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 Y+ I W + L G +V +L L + L S +D+ +E VKL Sbjct: 445 YRHI-----WRQYWSTALKPGMQGEAVLQLEHHLSVL--LGQPSLNSNVYDSALEEKVKL 497 Query: 145 FQMRHGLDPSGMVDSSTLEAM------NVP 168 FQ GL G+ TLE + NVP Sbjct: 498 FQRWQGLAVDGIAGKRTLERLESLIRENVP 527 >gi|330470820|ref|YP_004408563.1| cell wall hydrolase/autolysin [Verrucosispora maris AB-18-032] gi|328813791|gb|AEB47963.1| cell wall hydrolase/autolysin [Verrucosispora maris AB-18-032] Length = 388 Score = 70.6 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKG-LSVAFDAYVESAVKLFQMRHGLDPSGMV 157 +RP+ G+ +V +R L L + G FD E AV+ FQ GL G V Sbjct: 1 MRPIRSGDRGPAVAEIRAVLTSLDLLSKATGPYDDEFDTATERAVRAFQQSRGLSVDGRV 60 Query: 158 DSSTLEAM 165 + T A+ Sbjct: 61 GAETWRAL 68 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 11/139 (7%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGID-SDIPIISKETIAQTEKAI--AFYQ 86 I A + + +D FD R S + A+T +A+ A ++ Sbjct: 15 EIRAVLTSLDLLSKATGPYDDEFDTATERAVRAFQQSRGLSVDGRVGAETWRALDAARWR 74 Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 + +R + +P+ PL + V+ L+ERL+ G + + AV FQ Sbjct: 75 -LGARTLYHAVPV-PL----TGEDVRSLQERLLEMGY--DTGRADAIYGIRTSRAVAQFQ 126 Query: 147 MRHGLDPSGMVDSSTLEAM 165 GL P G T+ A+ Sbjct: 127 REVGLTPDGTCGPHTMGAL 145 >gi|218755707|ref|ZP_03534503.1| hydrolase [Mycobacterium tuberculosis GM 1503] gi|254548919|ref|ZP_05139366.1| hydrolase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289764106|ref|ZP_06523484.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289711612|gb|EFD75628.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] Length = 406 Score = 70.2 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 8/72 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA--------FDAYVESAVKLFQMRHGLDP 153 L G+ S +V +R L G LD + FDA ++ AV+ FQ GL Sbjct: 12 LRCGDRSAAVTEIRAALTALGMLDHQEEDLTTGRNVALELFDAQLDQAVRAFQQHRGLLV 71 Query: 154 SGMVDSSTLEAM 165 G+V +T A+ Sbjct: 72 DGIVGEATYRAL 83 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 21/109 (19%) Query: 76 AQTEKAIAFYQD--------ILSRGGWPELPIRPLHLGNS-----------SVSVQRLRE 116 AQ ++A+ +Q I+ + L LG V L+ Sbjct: 54 AQLDQAVRAFQQHRGLLVDGIVGEATYRALKEASYRLGARTLYHQFGAPLYGDDVATLQA 113 Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 RL G + F +A+ +Q +GL G+ TL ++ Sbjct: 114 RLQDLGFYTG--LVDGHFGLQTHNALMSYQREYGLAADGICGPETLRSL 160 >gi|15843548|ref|NP_338585.1| N-acetymuramyl-L-alanine amidase-related protein [Mycobacterium tuberculosis CDC1551] gi|31795088|ref|NP_857581.1| putative hydrolase [Mycobacterium bovis AF2122/97] gi|57117169|ref|YP_178027.1| hydrolase [Mycobacterium tuberculosis H37Rv] gi|121635901|ref|YP_976124.1| putative hydrolase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121639826|ref|YP_980050.1| putative hydrolase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663782|ref|YP_001285305.1| N-acetymuramyl-L-alanine amidase-related protein [Mycobacterium tuberculosis H37Ra] gi|148825123|ref|YP_001289877.1| hydrolase [Mycobacterium tuberculosis F11] gi|167969452|ref|ZP_02551729.1| hypothetical hydrolase [Mycobacterium tuberculosis H37Ra] gi|215405973|ref|ZP_03418154.1| hydrolase [Mycobacterium tuberculosis 02_1987] gi|215413843|ref|ZP_03422508.1| hydrolase [Mycobacterium tuberculosis 94_M4241A] gi|215425177|ref|ZP_03423096.1| hydrolase [Mycobacterium tuberculosis T92] gi|215432896|ref|ZP_03430815.1| hydrolase [Mycobacterium tuberculosis EAS054] gi|215448262|ref|ZP_03435014.1| hydrolase [Mycobacterium tuberculosis T85] gi|219555762|ref|ZP_03534838.1| hydrolase [Mycobacterium tuberculosis T17] gi|224992321|ref|YP_002647011.1| putative hydrolase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800965|ref|YP_003033967.1| hydrolase [Mycobacterium tuberculosis KZN 1435] gi|254366451|ref|ZP_04982495.1| hypothetical hydrolase [Mycobacterium tuberculosis str. Haarlem] gi|260184845|ref|ZP_05762319.1| hydrolase [Mycobacterium tuberculosis CPHL_A] gi|260198975|ref|ZP_05766466.1| hydrolase [Mycobacterium tuberculosis T46] gi|260203128|ref|ZP_05770619.1| hydrolase [Mycobacterium tuberculosis K85] gi|289441358|ref|ZP_06431102.1| hydrolase [Mycobacterium tuberculosis T46] gi|289445516|ref|ZP_06435260.1| hydrolase [Mycobacterium tuberculosis CPHL_A] gi|289556183|ref|ZP_06445393.1| hydrolase [Mycobacterium tuberculosis KZN 605] gi|289567871|ref|ZP_06448098.1| hydrolase [Mycobacterium tuberculosis T17] gi|289572567|ref|ZP_06452794.1| hydrolase [Mycobacterium tuberculosis K85] gi|289747759|ref|ZP_06507137.1| hydrolase [Mycobacterium tuberculosis 02_1987] gi|289748453|ref|ZP_06507831.1| hydrolase [Mycobacterium tuberculosis T92] gi|289756050|ref|ZP_06515428.1| hydrolase [Mycobacterium tuberculosis EAS054] gi|289760088|ref|ZP_06519466.1| hydrolase [Mycobacterium tuberculosis T85] gi|297636602|ref|ZP_06954382.1| hydrolase [Mycobacterium tuberculosis KZN 4207] gi|297733597|ref|ZP_06962715.1| hydrolase [Mycobacterium tuberculosis KZN R506] gi|298527387|ref|ZP_07014796.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306778809|ref|ZP_07417146.1| hydrolase [Mycobacterium tuberculosis SUMu002] gi|306791520|ref|ZP_07429822.1| hydrolase [Mycobacterium tuberculosis SUMu005] gi|306795585|ref|ZP_07433887.1| hydrolase [Mycobacterium tuberculosis SUMu006] gi|307086717|ref|ZP_07495830.1| hydrolase [Mycobacterium tuberculosis SUMu012] gi|313660928|ref|ZP_07817808.1| hydrolase [Mycobacterium tuberculosis KZN V2475] gi|7478145|pir||C70851 probable hydrolase - Mycobacterium tuberculosis (strain H37RV) gi|13883926|gb|AAK48399.1| N-acetymuramyl-L-alanine amidase-related protein [Mycobacterium tuberculosis CDC1551] gi|31620686|emb|CAD96132.1| PUTATIVE HYDROLASE [Mycobacterium bovis AF2122/97] gi|38490393|emb|CAE55652.1| PROBABLE HYDROLASE [Mycobacterium tuberculosis H37Rv] gi|121491548|emb|CAL70005.1| Putative hydrolase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121495474|emb|CAL73963.1| Putative hydrolase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|134151963|gb|EBA44008.1| hypothetical hydrolase [Mycobacterium tuberculosis str. Haarlem] gi|148507934|gb|ABQ75743.1| N-acetymuramyl-L-alanine amidase-related protein [Mycobacterium tuberculosis H37Ra] gi|148723650|gb|ABR08275.1| hypothetical hydrolase [Mycobacterium tuberculosis F11] gi|224775437|dbj|BAH28243.1| putative hydrolase [Mycobacterium bovis BCG str. Tokyo 172] gi|253322469|gb|ACT27072.1| hydrolase [Mycobacterium tuberculosis KZN 1435] gi|289414277|gb|EFD11517.1| hydrolase [Mycobacterium tuberculosis T46] gi|289418474|gb|EFD15675.1| hydrolase [Mycobacterium tuberculosis CPHL_A] gi|289440815|gb|EFD23308.1| hydrolase [Mycobacterium tuberculosis KZN 605] gi|289536998|gb|EFD41576.1| hydrolase [Mycobacterium tuberculosis K85] gi|289541624|gb|EFD45273.1| hydrolase [Mycobacterium tuberculosis T17] gi|289688287|gb|EFD55775.1| hydrolase [Mycobacterium tuberculosis 02_1987] gi|289689040|gb|EFD56469.1| hydrolase [Mycobacterium tuberculosis T92] gi|289696637|gb|EFD64066.1| hydrolase [Mycobacterium tuberculosis EAS054] gi|289715652|gb|EFD79664.1| hydrolase [Mycobacterium tuberculosis T85] gi|298497181|gb|EFI32475.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308328146|gb|EFP16997.1| hydrolase [Mycobacterium tuberculosis SUMu002] gi|308339869|gb|EFP28720.1| hydrolase [Mycobacterium tuberculosis SUMu005] gi|308343881|gb|EFP32732.1| hydrolase [Mycobacterium tuberculosis SUMu006] gi|308363867|gb|EFP52718.1| hydrolase [Mycobacterium tuberculosis SUMu012] gi|323717331|gb|EGB26536.1| hydrolase [Mycobacterium tuberculosis CDC1551A] gi|328460693|gb|AEB06116.1| hydrolase [Mycobacterium tuberculosis KZN 4207] Length = 406 Score = 70.2 bits (171), Expect = 5e-10, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 8/72 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA--------FDAYVESAVKLFQMRHGLDP 153 L G+ S +V +R L G LD + FDA ++ AV+ FQ GL Sbjct: 12 LRCGDRSAAVTEIRAALTALGMLDHQEEDLTTGRNVALELFDAQLDQAVRAFQQHRGLLV 71 Query: 154 SGMVDSSTLEAM 165 G+V +T A+ Sbjct: 72 DGIVGEATYRAL 83 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 21/109 (19%) Query: 76 AQTEKAIAFYQD--------ILSRGGWPELPIRPLHLGNS-----------SVSVQRLRE 116 AQ ++A+ +Q I+ + L LG V L+ Sbjct: 54 AQLDQAVRAFQQHRGLLVDGIVGEATYRALKEASYRLGARTLYHQFGAPLYGDDVATLQA 113 Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 RL G + F +A+ +Q +GL G+ TL ++ Sbjct: 114 RLQDLGFYTG--LVDGHFGLQTHNALMSYQREYGLAADGICGPETLRSL 160 >gi|327480636|gb|AEA83946.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas stutzeri DSM 4166] Length = 321 Score = 70.2 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 45/182 (24%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++NI + GK V + +GR +P+ +RI + NP Sbjct: 89 RFILPPGPREG-IVINIAEYRMYYYPEGKNVVHTFPLGIGREGWGSPVGTARITAMTSNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P+SI +++ ++ + P Sbjct: 148 AWYPPKSI-REE----------------------------------HAADGDPLPTVVPP 172 Query: 303 GKINAMASTKIEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKD 359 G N + K+ H + + F +R + GC R+ N+++L + Sbjct: 173 GPDNPLGPYKMSLSLPGYLI--HGSNKK--FGIGMR-VSHGCFRMLNHNVLELAKMVKVG 227 Query: 360 TP 361 TP Sbjct: 228 TP 229 >gi|326905748|gb|EGE52681.1| hydrolase [Mycobacterium tuberculosis W-148] Length = 406 Score = 70.2 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 8/72 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA--------FDAYVESAVKLFQMRHGLDP 153 L G+ S +V +R L G LD + FDA ++ AV+ FQ GL Sbjct: 12 LRCGDRSAAVTEIRAALTALGMLDHQEEDLTTGRNVALELFDAQLDQAVRAFQQHRGLLV 71 Query: 154 SGMVDSSTLEAM 165 G+V +T A+ Sbjct: 72 DGIVGEATYRAL 83 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 21/109 (19%) Query: 76 AQTEKAIAFYQD--------ILSRGGWPELPIRPLHLGNS-----------SVSVQRLRE 116 AQ ++A+ +Q I+ + L LG V L+ Sbjct: 54 AQLDQAVRAFQQHRGLLVDGIVGEATYRALKEASYRLGARTLYHQFGAPLYGDDVATLQA 113 Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 RL G + F +A+ +Q +GL G+ TL ++ Sbjct: 114 RLQDLGFYTG--LVDGHFGLQTHNALMSYQREYGLAADGICGPETLRSL 160 >gi|296134424|ref|YP_003641671.1| spore cortex-lytic enzyme [Thermincola sp. JR] gi|296033002|gb|ADG83770.1| spore cortex-lytic enzyme [Thermincola potens JR] Length = 229 Score = 70.2 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L+ G+ V +L+ RL G + F A AVK FQ +HGL P G+V + Sbjct: 32 TLYWGSKGSDVIKLQTRLKDWGYFKG--PVDGVFGAATSRAVKNFQRKHGLTPDGVVGPA 89 Query: 161 TLEAMNVPVDLR 172 T A+ + R Sbjct: 90 TWRALGISAFSR 101 >gi|254233397|ref|ZP_04926723.1| hypothetical protein TBCG_03842 [Mycobacterium tuberculosis C] gi|124603190|gb|EAY61465.1| hypothetical protein TBCG_03842 [Mycobacterium tuberculosis C] Length = 401 Score = 70.2 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 8/72 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA--------FDAYVESAVKLFQMRHGLDP 153 L G+ S +V +R L G LD + FDA ++ AV+ FQ GL Sbjct: 12 LRCGDRSAAVTEIRAALTALGMLDHQEEDLTTGRNVALELFDAQLDQAVRAFQQHRGLLV 71 Query: 154 SGMVDSSTLEAM 165 G+V +T A+ Sbjct: 72 DGIVGEATYRAL 83 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 21/109 (19%) Query: 76 AQTEKAIAFYQD--------ILSRGGWPELPIRPLHLGNS-----------SVSVQRLRE 116 AQ ++A+ +Q I+ + L LG V L+ Sbjct: 54 AQLDQAVRAFQQHRGLLVDGIVGEATYRALKEASYRLGARTLYHQFGAPLYGDDVATLQA 113 Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 RL G + F +A+ +Q +GL G+ TL ++ Sbjct: 114 RLQDLGFYTG--LVDGHFGLQTHNALMSYQREYGLAADGICGPETLRSL 160 >gi|117929357|ref|YP_873908.1| cell wall hydrolase/autolysin [Acidothermus cellulolyticus 11B] gi|117649820|gb|ABK53922.1| cell wall hydrolase/autolysin [Acidothermus cellulolyticus 11B] Length = 378 Score = 70.2 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 7/71 (9%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSV-------AFDAYVESAVKLFQMRHGLDPS 154 + LG+ S +V +R RL G L + G FD V+ A++ FQ + GL Sbjct: 7 MRLGDRSFAVAEIRHRLAHLGLLSRTNGDHDCVRAACDVFDETVDHAIRAFQQQRGLRTD 66 Query: 155 GMVDSSTLEAM 165 G+VD+ T A+ Sbjct: 67 GVVDAETFRAL 77 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 11/105 (10%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 +P PL +G+ V L+ RL G F E+A++ FQ GL G Sbjct: 92 VPGHPL-VGD---DVAALQRRLCDMGF--DCGRCDGIFGPLTEAALREFQRNVGLPADGT 145 Query: 157 VDSSTLEAMN----VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + TL A+ V R +L+ L R++ G VL Sbjct: 146 CGADTLRALQRLRRTVVGGRPYELRETL-RLRHHPPTVAGKCVVL 189 >gi|54027638|ref|YP_121880.1| putative N-acetylmuramoyl-L-alanine amidase [Nocardia farcinica IFM 10152] gi|54019146|dbj|BAD60516.1| putative N-acetylmuramoyl-L-alanine amidase [Nocardia farcinica IFM 10152] Length = 397 Score = 70.2 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 12/76 (15%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKG------------LSVAFDAYVESAVKLFQMRH 149 L G++ +V +R L G L G +FD +++SAV+ FQ Sbjct: 4 LRHGDTGPAVAEVRSTLASLGFLHAHAGSDESQSPEYWKDTEASFDHHLDSAVRAFQQHR 63 Query: 150 GLDPSGMVDSSTLEAM 165 GL G+V +T A+ Sbjct: 64 GLLVDGVVGPATYRAL 79 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 10/97 (10%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 ++ T ++A Y+ + +R +L PL G+ V L+ +L G Sbjct: 70 VVGPATYRALKEA--SYR-LGARTLIYQLSA-PL-YGD---DVATLQRKLQDLGFY--VH 119 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F + A+ FQ GL G+ TL ++ Sbjct: 120 RVDGYFGPHTHDALTAFQREIGLSADGICGPDTLRSL 156 >gi|23013110|ref|ZP_00053052.1| COG2989: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] Length = 84 Score = 70.2 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%) Query: 350 IDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDI 409 ++L +L P W E + R T + L V+ +Y +AW+ + I+ FRDDI Sbjct: 1 MELGELMLG--PRWQGKLAENIAANRSTRTLMLERTTQVYMMYWTAWTDEAGILHFRDDI 58 Query: 410 YGLDNVHVGIIPL---PEDHP 427 YG D + + P P Sbjct: 59 YGHDRRLMTAMERSRSPAPRP 79 >gi|83588974|ref|YP_428983.1| ErfK/YbiS/YcfS/YnhG [Moorella thermoacetica ATCC 39073] gi|83571888|gb|ABC18440.1| ErfK/YbiS/YcfS/YnhG [Moorella thermoacetica ATCC 39073] Length = 294 Score = 69.9 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 +P PL G S V L+ RL G + E AVK FQ+ HGL +G Sbjct: 217 TMPTGPLKPGQGSPEVITLQARLREKGFYLFGPTDGD-YGLMTELAVKEFQLYHGLTATG 275 Query: 156 MVDSSTLEAM 165 + D+ TL A+ Sbjct: 276 VADARTLRAL 285 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 33/132 (25%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM---- 165 V L+ RL G L+ ++ + AV FQ H L P G V +T + + Sbjct: 31 DVSDLQLRLAQMGYYFG--PLNGIYNKTTQRAVINFQREHHLTPLGRVGPATWKELARGI 88 Query: 166 -------NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 P + ++ ++ R+ L + +G+V + Sbjct: 89 AVAHQAPAGPPPGKNLKIVIDTERL--------------------VLTILVDGRVFQKYP 128 Query: 219 VIVGRVDRQTPI 230 V +G+ +P+ Sbjct: 129 VAIGKYTSPSPV 140 >gi|325003245|ref|ZP_08124357.1| N-acetylmuramoyl-L-alanine amidase [Pseudonocardia sp. P1] Length = 386 Score = 69.9 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+S +V+ +R L G L P FD V+ AV++FQ GL G+V Sbjct: 4 LRRGDSGPAVREIRATLRELGLLPALSPGTSDRDVFDDEVDHAVRVFQQGRGLITDGIVG 63 Query: 159 SSTLEAM 165 T A+ Sbjct: 64 PDTARAL 70 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V L+ERL+ G S FD E A+ FQ +G+ P GM TL A+ Sbjct: 92 GDDVATLQERLLELGYNPGRP--SGLFDQQTEQALMRFQRDYGMVPDGMCGPETLRAL 147 >gi|296167152|ref|ZP_06849559.1| N-acetylmuramoyl-l-alanine amidase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897474|gb|EFG77073.1| N-acetylmuramoyl-l-alanine amidase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 405 Score = 69.9 bits (170), Expect = 7e-10, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 8/72 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGL--------SVAFDAYVESAVKLFQMRHGLDP 153 L G+ S +V +R L G LD + FDA ++ AV+ FQ GL Sbjct: 12 LRCGDRSAAVTEVRATLAALGLLDIPEDDLATGRHVSPEVFDAELDQAVRAFQQHRGLLV 71 Query: 154 SGMVDSSTLEAM 165 G+V +T A+ Sbjct: 72 DGIVGEATYRAL 83 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 18/115 (15%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRG-----GWPELPIRPLHLGNS-----------SVS 110 P + + Q +A ++ +L G + L LG Sbjct: 48 SPEVFDAELDQAVRAFQQHRGLLVDGIVGEATYRALKEASYRLGARTLYHQFGAPLYGDD 107 Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V L+ RL G + F +A+ +Q +GL G+ TL ++ Sbjct: 108 VATLQARLQDLGFYTG--LVDGHFGLQTHNALMSYQREYGLAADGICGPETLRSL 160 >gi|145221431|ref|YP_001132109.1| peptidoglycan binding domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|315446817|ref|YP_004079696.1| N-acetylmuramoyl-L-alanine amidase [Mycobacterium sp. Spyr1] gi|145213917|gb|ABP43321.1| Peptidoglycan-binding domain 1 protein [Mycobacterium gilvum PYR-GCK] gi|315265120|gb|ADU01862.1| N-acetylmuramoyl-L-alanine amidase [Mycobacterium sp. Spyr1] Length = 395 Score = 69.9 bits (170), Expect = 8e-10, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 9/89 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDL-DPSKGLSV-------AFDAYVESAVKLFQMRHG 150 + L G+ +V +R L G DP + LS FD ++ AV+ FQ G Sbjct: 1 MSSLRRGDRGGAVAEIRAALAALGMATDPDEDLSTGKHVAADLFDDELDHAVRAFQQHRG 60 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 L G+V +T A+ R+ +N Sbjct: 61 LLVDGIVGEATYRAL-KEASYRLGARTLN 88 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 8/87 (9%) Query: 83 AFYQDILSRGGWPELPIRPL--HLG--NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 A Y+ + L R L G V L+ RL G + F Sbjct: 70 ATYRALKEAS--YRLGARTLNHQFGAPMYGDDVATLQARLQDLGFYTG--LVDGHFGLQT 125 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +A+ +Q +GL P G+ TL ++ Sbjct: 126 HNALSSYQREYGLYPDGICGPETLRSL 152 >gi|225386952|ref|ZP_03756716.1| hypothetical protein CLOSTASPAR_00702 [Clostridium asparagiforme DSM 15981] gi|225046964|gb|EEG57210.1| hypothetical protein CLOSTASPAR_00702 [Clostridium asparagiforme DSM 15981] Length = 538 Score = 69.9 bits (170), Expect = 8e-10, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 3/88 (3%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 Y + G +P L +G V +L+ RL+ G +D + + + AVK Sbjct: 63 YLADVDLGDAEPIPDY-LRIGVRHAIVAKLQARLMELGFMD-NDEPTDYYGEMTVQAVKH 120 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 FQ ++ L G+V +ST +A+ + D + Sbjct: 121 FQRQNELAQDGIVGNSTWDAI-MSPDAK 147 Score = 58.3 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L LG +V+R+++ L G L ++ + ++AVK FQ R+GL Sbjct: 288 PNARSNGLMLGERGDAVKRMQQLLSKHGYLYSGN-VTGYYGEATQTAVKNFQSRNGLSVD 346 Query: 155 GMVDSSTLEAM 165 G+V TL + Sbjct: 347 GLVGVQTLAKL 357 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V ++RL G L + + A+K FQ R+ G + ST Sbjct: 224 LSYGEKSDVVLACQKRLKELGYLTTEPDGT--YGEDTAIAIKQFQARNDQIVDGYLGPST 281 Query: 162 LEAMNVPVDLRIRQLQV 178 A++ + R L + Sbjct: 282 RMALD-SPNARSNGLML 297 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 6/94 (6%) Query: 77 QTEKAIAFYQDILSRGGW-----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 Q + +A I+ W P+ + G +QR+++RL G L + ++ Sbjct: 122 QRQNELAQ-DGIVGNSTWDAIMSPDAKYYAVSKGTQGDDIQRIQQRLYELGYLATADLVT 180 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F E+AV Q +GL+ G V T+ + Sbjct: 181 GNFGDSTEAAVLKLQEVNGLNMDGKVGQKTINLL 214 >gi|330839341|ref|YP_004413921.1| NLP/P60 protein [Selenomonas sputigena ATCC 35185] gi|329747105|gb|AEC00462.1| NLP/P60 protein [Selenomonas sputigena ATCC 35185] Length = 220 Score = 69.9 bits (170), Expect = 9e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +G+ V ++ RL G + G F AVK FQ HGL+ G+V Sbjct: 23 ASAFRIGDQGSDVAEIQGRLASLGYDVAADGD---FGPATAEAVKAFQSAHGLEADGLVG 79 Query: 159 SSTLEAM 165 S+T A+ Sbjct: 80 SATYSAL 86 >gi|260886859|ref|ZP_05898122.1| endopeptidase, cell wall lytic activity [Selenomonas sputigena ATCC 35185] gi|260863458|gb|EEX77958.1| endopeptidase, cell wall lytic activity [Selenomonas sputigena ATCC 35185] Length = 216 Score = 69.9 bits (170), Expect = 9e-10, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +G+ V ++ RL G + G F AVK FQ HGL+ G+V Sbjct: 19 ASAFRIGDQGSDVAEIQGRLASLGYDVAADGD---FGPATAEAVKAFQSAHGLEADGLVG 75 Query: 159 SSTLEAM 165 S+T A+ Sbjct: 76 SATYSAL 82 >gi|261253884|ref|ZP_05946457.1| general secretion pathway protein A [Vibrio orientalis CIP 102891] gi|260937275|gb|EEX93264.1| general secretion pathway protein A [Vibrio orientalis CIP 102891] Length = 540 Score = 69.5 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 15/149 (10%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARV---DMGIDSDIPIISKETIAQTEKA 81 +L + + LDE++ + +++ + D + + +I + + + Sbjct: 379 ALFRCQLDQASLDELVQANRPVLLSLQIDEQPRFAILYSVSGEQVELLIGSQLVTFDRQW 438 Query: 82 IA-----FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 +A Y+ I W L G S + +L + L L + +S FD+ Sbjct: 439 LASIWQGQYRHI-----WQSYWSETLKQGMSGEEIAQLDKALSQV--LGEPESVSEYFDS 491 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V+ V+LFQ GL G+ TL + Sbjct: 492 DVKRKVELFQRWQGLSVDGIAGKKTLRLL 520 >gi|298370231|ref|ZP_06981547.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria sp. oral taxon 014 str. F0314] gi|298281691|gb|EFI23180.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria sp. oral taxon 014 str. F0314] Length = 350 Score = 69.1 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 71/233 (30%), Gaps = 71/233 (30%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +G++ V VG+ QT + +I FNP W IP+SI ++ Sbjct: 49 QHVFINIPQQRLFIYTDGQLTKAYPVAVGKSMTQTTLGEHKIGVKAFNPTWHIPQSIQKE 108 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + PG N + + Sbjct: 109 ---------------------RGDGVKSVP------------------PGPKNPLGPVFV 129 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P +V + GCVR+++ L + Sbjct: 130 RLGDPKLGLGIHGTNTP---ASVPGIRSHGCVRMKSPDAL--------------EFATTI 172 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSI----IQFRDDIYGLDNVHVGIIP 421 T P + +Y A +D+ + D Y N++ + Sbjct: 173 TTGS----------PAYVIYQMASLNEDANKNLWLAAYRDPYNKKNLNTDALR 215 >gi|238020377|ref|ZP_04600803.1| hypothetical protein GCWU000324_00257 [Kingella oralis ATCC 51147] gi|237867357|gb|EEP68363.1| hypothetical protein GCWU000324_00257 [Kingella oralis ATCC 51147] Length = 331 Score = 69.1 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 53/158 (33%), Gaps = 43/158 (27%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 V++NIP L ++G + V VG+ QT I +I FNP W IP SI ++ Sbjct: 52 VVINIPQQRLFLFKDGSLKKVYPVGVGKAMSQTNIGEHKIGAKAFNPTWHIPLSIQKE-- 109 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 G + PG N + + Sbjct: 110 -------------------RGDGVKSVP------------------PGPKNPLGPVFVRL 132 Query: 316 YSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 + +H T P +V + GCVR+++ L Sbjct: 133 GNPKLGLGIHGTSNP---ASVPGVVSHGCVRMKSPDAL 167 >gi|330448220|ref|ZP_08311868.1| lysM domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492411|dbj|GAA06365.1| lysM domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 300 Score = 69.1 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 63/188 (33%), Gaps = 53/188 (28%) Query: 189 QKMGLRYVLVNIPAASLEAV--ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + + ++VN+ L ++ + +GRV R+TP + + IN + NP W Sbjct: 87 PDVSHKGIVVNLAELRLYYFPKDDASKVYIFPIGIGRVGRETPSMTTTINEKVKNPTWTP 146 Query: 247 PRSI-----IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P SI + D++ + Sbjct: 147 PASIRKEHAARGDILPAVV----------------------------------------P 166 Query: 302 PGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 G N + K+ + Y +H T + F +R + GC+R+ N D+ WL Sbjct: 167 AGPDNPLGDYKMRLAYGHGEYLIHGTNKD--FGIGMR-VSGGCIRM-NPWDV-EWLFPHV 221 Query: 361 PTWSRYHI 368 ++ I Sbjct: 222 ALGTQVRI 229 >gi|325927742|ref|ZP_08188970.1| putative chitinase [Xanthomonas perforans 91-118] gi|325541943|gb|EGD13457.1| putative chitinase [Xanthomonas perforans 91-118] Length = 584 Score = 69.1 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 45/121 (37%), Gaps = 12/121 (9%) Query: 64 DSDIPIISKETI---AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 D++ + S ET +A A + + G L G++S V +L++ L Sbjct: 356 DANGKLTSPETFWNQGHQHEAGARHTQAAAASG-----TGALRHGDNSQDVGKLQQDLNR 410 Query: 121 SGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQL 176 G D F AV FQ +HGL G+V T A+ P R Q+ Sbjct: 411 LGVRDAQGNRLAEDGRFGDNTREAVMAFQKQHGLQQDGVVGRDTRAALAAQPAQTREAQV 470 Query: 177 Q 177 Sbjct: 471 A 471 >gi|223984154|ref|ZP_03634305.1| hypothetical protein HOLDEFILI_01598 [Holdemania filiformis DSM 12042] gi|223963886|gb|EEF68247.1| hypothetical protein HOLDEFILI_01598 [Holdemania filiformis DSM 12042] Length = 262 Score = 68.7 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 +P + G+ + V ++ L G P +S FDA ++ AV+ FQ HGL G+ Sbjct: 180 VPFTQIQKGDKNTEVCVAQDALWALGY--PITKISGVFDAELDQAVRAFQRDHGLVADGI 237 Query: 157 VDSSTLEAM 165 + T EA+ Sbjct: 238 LGKLTWEAL 246 >gi|41410439|ref|NP_963275.1| CwlM [Mycobacterium avium subsp. paratuberculosis K-10] gi|118465835|ref|YP_884413.1| N-acetylmuramoyl-L-alanine amidase [Mycobacterium avium 104] gi|41399273|gb|AAS06891.1| CwlM [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167122|gb|ABK68019.1| putative N-acetylmuramoyl-L-alanine amidase [Mycobacterium avium 104] Length = 406 Score = 68.7 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 8/72 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA--------FDAYVESAVKLFQMRHGLDP 153 L G+ S +V +R L G L + FDA ++ AV+ FQ GL Sbjct: 12 LRCGDRSAAVTEIRATLASLGLLASADEDLSTGRHVALELFDAELDQAVRAFQQHRGLLV 71 Query: 154 SGMVDSSTLEAM 165 G+V +T A+ Sbjct: 72 DGIVGEATYRAL 83 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 22/94 (23%) Query: 83 AFYQDILSRGGWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLDPSKGLS 131 A Y+ + LG V L+ RL G + Sbjct: 78 ATYRALKEA---------SYRLGARTLYHQFGAPLYGDDVATLQARLQDLGFYTG--LVD 126 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F +A+ +Q +GL G+ TL ++ Sbjct: 127 GYFGLQTHNALMSYQREYGLSADGICGPETLRSL 160 >gi|260769654|ref|ZP_05878587.1| hypothetical protein VFA_002712 [Vibrio furnissii CIP 102972] gi|260614992|gb|EEX40178.1| hypothetical protein VFA_002712 [Vibrio furnissii CIP 102972] gi|315182349|gb|ADT89262.1| hypothetical protein vfu_B01066 [Vibrio furnissii NCTC 11218] Length = 308 Score = 68.7 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 42/175 (24%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++VN+ L E + V +GR+ R TP + + I++ NP W P+SI +++ Sbjct: 96 IVVNLAELRLYYFEPETRKVHIFPVGIGRIGRDTPEMETVISQKRPNPTWTPPQSI-RQE 154 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 +A + P + G N + + Sbjct: 155 YLAKGIELPAVV----------------------------------PAGPENPLGEYALR 180 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 N Y +H T + F +R +SGC+R+ + D+ WL + + I Sbjct: 181 LGYGNGEYLIHGTNKD--FGIGMR-VSSGCIRM-DPKDI-EWLFQQVQRGEKVRI 230 >gi|260424725|ref|ZP_05778983.1| endopeptidase, cell wall lytic activity [Dialister invisus DSM 15470] gi|260402963|gb|EEW96510.1| endopeptidase, cell wall lytic activity [Dialister invisus DSM 15470] Length = 246 Score = 68.7 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 LG+S +V+ L+ RL +G L + G F+ SAVK FQ +H LD G+V Sbjct: 25 SYSLGDSGDAVKDLQRRLTQAGCLVRADG---RFNETTVSAVKKFQKKHNLDVDGVVGPV 81 Query: 161 TLEAM 165 T +A+ Sbjct: 82 TYKAL 86 >gi|254777652|ref|ZP_05219168.1| putative N-acetylmuramoyl-L-alanine amidase [Mycobacterium avium subsp. avium ATCC 25291] Length = 406 Score = 68.7 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 8/72 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA--------FDAYVESAVKLFQMRHGLDP 153 L G+ S +V +R L G L + FDA ++ AV+ FQ GL Sbjct: 12 LRCGDRSAAVTEIRATLASLGLLASADEDLSTGRHVALELFDAELDQAVRAFQQHRGLLV 71 Query: 154 SGMVDSSTLEAM 165 G+V +T A+ Sbjct: 72 DGIVGEATYRAL 83 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 22/94 (23%) Query: 83 AFYQDILSRGGWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLDPSKGLS 131 A Y+ + LG V L+ RL G + Sbjct: 78 ATYRALKEA---------SYRLGARTLYHQFGAPLYGDDVATLQARLQDLGFYTG--LVD 126 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F +A+ +Q +GL G+ TL ++ Sbjct: 127 GYFGLQTHNALMSYQREYGLSADGICGPETLRSL 160 >gi|15808975|gb|AAL08577.1|AF418548_3 N-acetylmuramoyl-l-alanine amidase [Mycobacterium avium subsp. paratuberculosis] Length = 406 Score = 68.7 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 8/72 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA--------FDAYVESAVKLFQMRHGLDP 153 L G+ S +V +R L G L + FDA ++ AV+ FQ GL Sbjct: 12 LRCGDRSAAVTEIRATLASLGLLASADEDLSTGRHVALELFDAELDQAVRAFQQHRGLLV 71 Query: 154 SGMVDSSTLEAM 165 G+V +T A+ Sbjct: 72 DGIVGEATYRAL 83 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 22/94 (23%) Query: 83 AFYQDILSRGGWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLDPSKGLS 131 A Y+ + LG V L+ RL G + Sbjct: 78 ATYRALKEA---------SYRLGARTLYHQFGAPLYGDDVATLQARLQDLGFYTG--LVD 126 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F +A+ +Q +GL G+ TL ++ Sbjct: 127 GYFGLQTHNALMSYQREYGLSADGICGPETLRSL 160 >gi|114567178|ref|YP_754332.1| ErfK/YbiS/YcfS/YnhG [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338113|gb|ABI68961.1| ErfK/YbiS/YcfS/YnhG [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 283 Score = 68.7 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 12/140 (8%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + S + +++RL G + F E+A+K FQ GL G+VD +T Sbjct: 12 KIRMSGPDIHLMQKRLKELGYNPGVEDG--IFGEQSEAALKAFQASRGLVVDGVVDPNT- 68 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 + + IR L ++ Q + +++ L +G V VG Sbjct: 69 -WLLLEPSSSIR-----LQNKRE--GQAWEQPRISIDVVKRRLTYT-SGSFKKTYPVAVG 119 Query: 223 RVDRQTPILHSRINRIMFNP 242 + TP+ + I + NP Sbjct: 120 KPQTPTPLGNWTIVQKTVNP 139 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 7/80 (8%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V+ ++ L G F E+AV FQ + L G+V Sbjct: 207 RVLSRGDQGSDVKEVQRMLRTLGYYRVKPDG--KFGPKTEAAVIAFQRDNQLIADGIVGP 264 Query: 160 STLEAMNVPVDLRIRQLQVN 179 T A+ + L +N Sbjct: 265 YTHHAL-----QKAYDLAIN 279 >gi|312898059|ref|ZP_07757465.1| 3D domain protein [Megasphaera micronuciformis F0359] gi|310620884|gb|EFQ04438.1| 3D domain protein [Megasphaera micronuciformis F0359] Length = 166 Score = 68.7 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 LG + V ++ LI +G L + G F + ++AV+ FQ HGL G+V + T+ Sbjct: 6 LGMTGTRVASVQNMLIGTGYL--TDGADGVFGSGTQAAVQRFQADHGLTADGIVGTQTMN 63 Query: 164 AM 165 A+ Sbjct: 64 AL 65 >gi|266620407|ref|ZP_06113342.1| endopeptidase, cell wall lytic activity [Clostridium hathewayi DSM 13479] gi|288867984|gb|EFD00283.1| endopeptidase, cell wall lytic activity [Clostridium hathewayi DSM 13479] Length = 513 Score = 68.7 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G V L++RL+ G +D + + F ESAVK FQ ++ L G+V T Sbjct: 87 LRNGVEHPIVASLQQRLMDLGFMD-NDEPTQYFGTMTESAVKTFQRQNHLAQDGIVGPET 145 Query: 162 LEAMNVPVDLR 172 L A+ + + Sbjct: 146 LNAI-MTPSAK 155 Score = 63.7 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V + RL G L + A+ +AVK FQ R+ L G + ST Sbjct: 232 LSYGEKSDVVLACQTRLKELGYLTTTPDG--AYGDDTAAAVKQFQARNDLVVDGYLGPST 289 Query: 162 LEAMNVPVDLRIRQLQV 178 A+N + + L + Sbjct: 290 RVALN-SAEAQANGLML 305 Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L LG +V R+++ L G L S ++ + E AVK FQ +GL G V Sbjct: 300 ANGLMLGEQGETVTRIQQLLNKYGYLS-SANVTGYYGEVTEKAVKSFQSSNGLTADGSVG 358 Query: 159 SSTLEAMNVPVDLRI 173 T+ + + Sbjct: 359 RQTMNKLTGSNVKKA 373 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++R++ RL G L ++ F E+AV Q +GL+ G V T+ + Sbjct: 165 GDDIKRIQNRLYELGYLATGDLVTGHFGDDTEAAVIKLQEVNGLNVDGKVGRQTINLL 222 >gi|187939515|gb|ACD38663.1| putative peptidoglycan-binding domain-containing protein [Pseudomonas aeruginosa] Length = 268 Score = 68.7 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ S V++L+ RL + F A E AV+ FQ HGL G+ Sbjct: 2 TLRYGDRSQEVRQLQRRLNTW--AGANLYEDGHFGAATEDAVRAFQRSHGLVADGIAGPK 59 Query: 161 TLEAM 165 TL A+ Sbjct: 60 TLAAL 64 >gi|218672072|ref|ZP_03521741.1| hypothetical protein RetlG_10705 [Rhizobium etli GR56] Length = 58 Score = 68.7 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%) Query: 374 TRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDNVHVGIIPLPEDH 426 + VK+ +VPV+ Y +AW KD ++++ DD+YG D Sbjct: 1 NGQNHAVKVPQKVPVYVSYFTAWPNKDGVVEYFDDVYGRDTYVKKAFDATTKA 53 >gi|307943635|ref|ZP_07658979.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] gi|307773265|gb|EFO32482.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] Length = 399 Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 47/128 (36%), Gaps = 18/128 (14%) Query: 50 DRFDNFLARVDMGID------------SDIPIISKETIAQTEKAIAFYQDILSRGGWPEL 97 D F FL R + D + P K A +A Y + Sbjct: 156 DAFIRFLERSGLSQDLREADFEAIARRYNGPGQVKHYAALMRRA---YAKLGGDQSDTHK 212 Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + L LG+ V+ L++RL G G F + AV FQ+ HGL P G+V Sbjct: 213 DVNLLKLGSEGYRVEALQKRLASLGYTLRPDGD---FGPATKRAVVGFQVDHGLTPDGVV 269 Query: 158 DSSTLEAM 165 T EA+ Sbjct: 270 GPKTQEAL 277 >gi|294668409|ref|ZP_06733512.1| hypothetical protein NEIELOOT_00327 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309727|gb|EFE50970.1| hypothetical protein NEIELOOT_00327 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 317 Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 69/233 (29%), Gaps = 71/233 (30%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +V++NIP L +GK+ V VG+ QT + +I FNP W IP+SI QK Sbjct: 32 HHVVINIPQQRLFLYTDGKLAKIYPVAVGKAMTQTNLGSHKIGAKAFNPIWHIPKSI-QK 90 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 ++ G PG N + + Sbjct: 91 EL--------------------NNGVTSIP------------------PGPKNPLGPVFV 112 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P +V + GCVR+++ L + + Sbjct: 113 RLGDPKLGLGIHGTNAP---ASVPGVRSHGCVRMKSPDAL--------------QFAKTI 155 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF----RDDIYGLDNVHVGIIP 421 T P +Y A D D Y N++ + Sbjct: 156 TTGS----------PADVIYQMAALNVDGAGNLWLAAYRDPYNKKNLNTAALR 198 >gi|17313229|ref|NP_490609.1| hypothetical protein phiCTXp12 [Pseudomonas phage phiCTX] gi|4063783|dbj|BAA36237.1| unnamed protein product [Pseudomonas phage phiCTX] Length = 268 Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ S V +L+ RL + F A E AV+ FQ HGL G+ Sbjct: 2 TLRYGDRSQEVLQLQRRLNTW--AGANLYEDGHFGAATEDAVRAFQRSHGLVADGIAGPK 59 Query: 161 TLEAM 165 TL A+ Sbjct: 60 TLAAL 64 >gi|307943228|ref|ZP_07658573.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] gi|307774024|gb|EFO33240.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] Length = 399 Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 6/103 (5%) Query: 75 IAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 A +A YQ I G P R L LG+ V+ L+ERLI G + G Sbjct: 190 YASLMQA--AYQRIGKSGETTSNPRGRMLRLGSEGYRVKALQERLITLGYHLQADGD--- 244 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 F V FQ+ HGL P G+V T E M+ V + ++ Sbjct: 245 FGPATRRQVVAFQVDHGLKPDGVVGPLTEERMDEAVPINASKI 287 >gi|75907389|ref|YP_321685.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75701114|gb|ABA20790.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 412 Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ SV+ L+++L +G ++ +D E AV+ FQ GL G+V +ST Sbjct: 66 LERGDQGPSVRNLQQKLQQAGFY--QAPVTQVYDFSTEEAVRRFQEAAGLPVDGVVGAST 123 Query: 162 LEAMN----VPVDLRIRQ 175 LE ++ PV +++Q Sbjct: 124 LEKLDQWRSTPVANQVQQ 141 Score = 59.8 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V+ L++RL ++G + + F E AVK FQ + LD G+V +T Sbjct: 204 LVKGDEGEAVRSLQQRLRVAGFYYGNA--TGVFGPITEEAVKRFQTAYKLDVDGIVGPAT 261 Query: 162 LEAM 165 + + Sbjct: 262 IRRL 265 Score = 59.8 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ +V+ L+E+LI +G L + F Y AVK FQ + L SG+ + Sbjct: 286 KLTVGDRGEAVRVLQEQLIQAGYLQGQP--NGYFGPYTAEAVKRFQAANYLSASGIAGPT 343 Query: 161 TLEAM 165 T + Sbjct: 344 TRAKL 348 >gi|68537190|ref|YP_251895.1| putative hydrolase [Corynebacterium jeikeium K411] gi|260579551|ref|ZP_05847422.1| N-acetymuramyl-L-alanine amidase-related protein [Corynebacterium jeikeium ATCC 43734] gi|68264789|emb|CAI38277.1| putative hydrolase [Corynebacterium jeikeium K411] gi|258602322|gb|EEW15628.1| N-acetymuramyl-L-alanine amidase-related protein [Corynebacterium jeikeium ATCC 43734] Length = 395 Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 15/93 (16%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSV------------AFDAYVESAVKLFQMRH 149 L +G+ S V +R L G L+ +G + FD + A+K FQ + Sbjct: 6 LQVGDRSPRVAEVRGTLARLGLLEGYEGDATGSKSQRWTSEEEVFDETLAEALKAFQQQR 65 Query: 150 GLDPSGMVDSSTLEAM---NVPVDLRIRQLQVN 179 G+ G + TL A+ + + R+ LQ N Sbjct: 66 GIIADGTITPGTLRALREASYTLGARVLSLQSN 98 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 54/148 (36%), Gaps = 30/148 (20%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLH-----LGNS----------SVSVQRLRER 117 ET+A+ KA + I++ G +R L LG V +L+ + Sbjct: 52 ETLAEALKAFQQQRGIIADGTITPGTLRALREASYTLGARVLSLQSNQFVGDDVAQLQTQ 111 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN--------VPV 169 L G + + F SAV +Q+ +GL+ G+V TL A++ Sbjct: 112 LHDLGFY--TSRVDGHFGPRTHSAVVNYQLNYGLNNDGVVGPDTLRALSYLGRRITGGSP 169 Query: 170 DLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + +I+ Q G R V+ Sbjct: 170 QSIREK-----EQIRSAGPQLTGKRVVI 192 >gi|323496502|ref|ZP_08101560.1| hypothetical protein VISI1226_13136 [Vibrio sinaloensis DSM 21326] gi|323318779|gb|EGA71732.1| hypothetical protein VISI1226_13136 [Vibrio sinaloensis DSM 21326] Length = 301 Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 67/197 (34%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 V++N+ L E N + V +GRV R TP + + I++ NP W P SI +K+ Sbjct: 93 VVINLAELRLYYFEPNTDLVHIFPVGIGRVGRDTPEMTTTISQKRPNPTWTPPASI-RKE 151 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 +A + P + G N + + Sbjct: 152 YLAKGIELPAVV----------------------------------PAGPENPLGEYALR 177 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 Y +H T + F +R +SGC+R+ + D+ WL + + Sbjct: 178 LAHGAGDYLIHGTNKD--FGIGLR-VSSGCIRM-DPKDI-DWLFPRVNLGDKVRV----- 227 Query: 374 TRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 228 INEPIKVSLEPDRSVFI 244 >gi|118470140|ref|YP_891129.1| N-acetylmuramoyl-L-alanine amidase [Mycobacterium smegmatis str. MC2 155] gi|118171427|gb|ABK72323.1| N-acetylmuramoyl-L-alanine amidase [Mycobacterium smegmatis str. MC2 155] Length = 396 Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 8/75 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISG-------DLDPSKGLS-VAFDAYVESAVKLFQMRHG 150 + L G+ +V +R L G DL + ++ FD ++ AV+ FQ G Sbjct: 1 MSSLRRGDRGGAVTEIRAALAALGLIENPDTDLSTGRHVALDVFDDELDHAVRAFQQHRG 60 Query: 151 LDPSGMVDSSTLEAM 165 L G+V +T A+ Sbjct: 61 LLVDGIVGEATYRAL 75 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V L+ RL G + F +A+ +Q +GL P G+ TL ++ Sbjct: 95 MYGDDVATLQARLQDLGFYTG--LVDGYFGLQTHNALMSYQREYGLYPDGICGPETLRSL 152 >gi|298243007|ref|ZP_06966814.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] gi|297556061|gb|EFH89925.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] Length = 545 Score = 67.9 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 4/80 (5%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L I G++ +V L+ +L G S + F +AVK FQ HGL Sbjct: 105 WPAL-IVTTSQGSTGSAVLALQRQLNAHG---ASLSVDGQFGPATAAAVKSFQSSHGLSA 160 Query: 154 SGMVDSSTLEAMNVPVDLRI 173 G+ T A+ + Sbjct: 161 DGVAGPQTWNALVGSKSSQA 180 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 8/82 (9%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 WP++ G + +V ++ L G S + +F S K FQ H Sbjct: 179 QAYSWPDIGQ-----GATGENVYSIQLMLQAHGY---SLPIDGSFGPQTASTAKAFQSAH 230 Query: 150 GLDPSGMVDSSTLEAMNVPVDL 171 GL G+V T + V Sbjct: 231 GLGADGIVGPQTWPVLIVTTSQ 252 Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 8/81 (9%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 WP + G++ V ++ L G + G+ AV FQ G Sbjct: 42 AYAWPLIGQ-----GSTGEDVYSVQLMLQARGYSLSTDGIDG---PQTTGAVVSFQSAQG 93 Query: 151 LDPSGMVDSSTLEAMNVPVDL 171 L G+V T A+ V Sbjct: 94 LQADGVVGPQTWPALIVTTSQ 114 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 4/78 (5%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 I+ WP L I G++ +V L+ +L G S + F + E+AVK +Q Sbjct: 237 IVGPQTWPVL-IVTTSQGSTGSAVLALQRQLNAHG---ASLSVDGQFGSATETAVKNYQS 292 Query: 148 RHGLDPSGMVDSSTLEAM 165 L G+ ++ Sbjct: 293 SQKLSVDGVAGPQIWSSL 310 >gi|227111739|ref|ZP_03825395.1| hypothetical protein PcarbP_02182 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 340 Score = 67.9 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 72/208 (34%), Gaps = 46/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L ++VN+ L GK + + +G++ R TP++ + I+ NP W Sbjct: 89 MLLPDTPREGIVVNLAELRLYYYPKGKNTVIVYPIGIGQLGRNTPLMTTSISEKRENPTW 148 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + I+K YL++ I + G Sbjct: 149 T-PTANIRK----------HYLEEQGIKL-----------------------PAVVPAGP 174 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + Y +H T F +R +SGC+R+ D+ L + P Sbjct: 175 DNPMGLHALRLSAHGGVYLLHGTNAD--FGIGMR-VSSGCIRL-RPDDI-KALFDNVPVG 229 Query: 364 SR-----YHIEEVVKTRKTTPVKLATEV 386 +R I+ V+ V++ + Sbjct: 230 TRVQIVNDAIKTSVEPDGKRYVEVHQPL 257 >gi|89897696|ref|YP_521183.1| hypothetical protein DSY4950 [Desulfitobacterium hafniense Y51] gi|89337144|dbj|BAE86739.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 231 Score = 67.9 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 IL+ G + L R L G+ V L+++L G + + + + ++AV FQ Sbjct: 22 ILASGAYGALGDRALSQGSRGSEVTELQKKLASLGYVVG--KVDGVYGSKTKAAVTRFQK 79 Query: 148 RHGLDPSGMVDSSTLEAM 165 GL G+ + T++ + Sbjct: 80 ERGLKVDGIAGAQTIKEL 97 >gi|15616233|ref|NP_244538.1| cell wall lytic activity [Bacillus halodurans C-125] gi|10176295|dbj|BAB07390.1| cell wall lytic activity [Bacillus halodurans C-125] Length = 416 Score = 67.9 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + L G S V+ L+E L G + + F + E AV+ FQM+HGL G Sbjct: 32 ALGDQTLRKGQSHPDVKELQEALKKKGFFN-YHTSTGYFGSITEDAVREFQMKHGLQVDG 90 Query: 156 MVDSSTLEAM 165 + TL A+ Sbjct: 91 IAGPQTLNAL 100 Score = 63.7 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 6/102 (5%) Query: 69 IISKETIAQT-EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS 127 I +T+A +A A + P L G+ +V+ L+ L G S Sbjct: 179 IAGPQTLAALTNQAPA---ASAPQYNAPVQQTTVLRQGSRGDAVRDLQRSLKDLGYYKSS 235 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 + F A +AV+ FQ + GL G+ TL A++V Sbjct: 236 --IDGIFGAGTTTAVREFQRKMGLTVDGVAGPQTLNALHVNP 275 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+S +V+ L+E+L G + S ++ + AV+ FQ + L G+ T Sbjct: 127 LRFGSSGQAVRDLQEKLKAKGYYNHS--ITGQYGRITTEAVREFQRANRLTVDGIAGPQT 184 Query: 162 LEAM-NVPVDLRIRQ 175 L A+ N Q Sbjct: 185 LAALTNQAPAASAPQ 199 >gi|219670845|ref|YP_002461280.1| spore cortex-lytic enzyme [Desulfitobacterium hafniense DCB-2] gi|219541105|gb|ACL22844.1| spore cortex-lytic enzyme [Desulfitobacterium hafniense DCB-2] Length = 228 Score = 67.9 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 IL+ G + L R L G+ V L+++L G + + + + ++AV FQ Sbjct: 19 ILASGAYGALGDRALSQGSRGSEVTELQKKLASLGYVVG--KVDGVYGSKTKAAVTRFQK 76 Query: 148 RHGLDPSGMVDSSTLEAM 165 GL G+ + T++ + Sbjct: 77 ERGLKVDGIAGAQTIKEL 94 >gi|56965585|ref|YP_177319.1| endopeptidase, cell wall lytic activity [Bacillus clausii KSM-K16] gi|56911831|dbj|BAD66358.1| cell wall lytic activity endopeptidase [Bacillus clausii KSM-K16] Length = 417 Score = 67.9 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 3/88 (3%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L LG+ + V L+ +L G + + + + SAV+ FQ +GL Sbjct: 204 PASSTGSLRLGDRNSQVTDLQNQLRSLGYFNQNA--TGYYGEVTRSAVREFQKNNGLSAD 261 Query: 155 GMVDSSTLEAM-NVPVDLRIRQLQVNLM 181 G+ T + N P + Q N Sbjct: 262 GIAGPQTFAKLSNSPAPVNKNQTVNNNQ 289 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+ SV L+E L G + S + + AV+ FQ + L Sbjct: 118 PSSKTSLLRVGSRGGSVTALQEDLRKLGFFNQSP--TGYYGTVTRDAVRAFQRANNLQAD 175 Query: 155 GMVDSSTLEAM 165 G+ +T A+ Sbjct: 176 GIAGPATQAAL 186 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 1/70 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L R L G S V L+ L G F + AV +Q + L G Sbjct: 30 ALGDRTLRQGMSHPDVTELQNALKEKGFFTYGTATG-YFGTHTRDAVIAYQKANNLLVDG 88 Query: 156 MVDSSTLEAM 165 + TL ++ Sbjct: 89 VAGPQTLSSL 98 >gi|886316|gb|AAB53132.1| N-acetymuramyl-L-alanine amidase [Mycobacterium leprae] Length = 205 Score = 67.9 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 8/73 (10%) Query: 101 PLHLGNSSVSVQRLRERLIISGDL-DPSKGLSVA-------FDAYVESAVKLFQMRHGLD 152 L G+ + +V +R L G L P L+ + FD ++ AV+ FQ GL Sbjct: 11 TLRCGDRNAAVTEIRSALAALGLLHSPGDDLTTSKYIALDLFDPQLDDAVRAFQQHRGLL 70 Query: 153 PSGMVDSSTLEAM 165 G+V +T A+ Sbjct: 71 VDGVVGEATHRAL 83 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S V L+ RL G + F +A+ +Q +GL G+ TL ++ Sbjct: 104 SGDDVATLQARLQDLGFYTGM--VDGHFGLQTHNALISYQREYGLTADGICGPETLRSL 160 >gi|21106554|gb|AAM35357.1| lytic enzyme [Xanthomonas axonopodis pv. citri str. 306] Length = 589 Score = 67.9 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 12/122 (9%) Query: 64 DSDIPIISKETI---AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 D++ + S E +A A + S G + G+SS V +L++ L Sbjct: 361 DANGKLTSPENFWNQGHQHQAGARHTQAASASG-----TGAVRHGDSSQDVGKLQQDLNR 415 Query: 121 SGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQL 176 G D F AV FQ +HGL G+V T A++ PV R Q+ Sbjct: 416 LGVRDAQGNRLAEDGRFGDNTREAVMAFQKQHGLQQDGVVGRDTRAALSAQPVQTREAQV 475 Query: 177 QV 178 Sbjct: 476 AA 477 >gi|77748527|ref|NP_640821.2| lytic enzyme [Xanthomonas axonopodis pv. citri str. 306] Length = 584 Score = 67.9 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 12/122 (9%) Query: 64 DSDIPIISKETI---AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 D++ + S E +A A + S G + G+SS V +L++ L Sbjct: 356 DANGKLTSPENFWNQGHQHQAGARHTQAASASG-----TGAVRHGDSSQDVGKLQQDLNR 410 Query: 121 SGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLRIRQL 176 G D F AV FQ +HGL G+V T A++ PV R Q+ Sbjct: 411 LGVRDAQGNRLAEDGRFGDNTREAVMAFQKQHGLQQDGVVGRDTRAALSAQPVQTREAQV 470 Query: 177 QV 178 Sbjct: 471 AA 472 >gi|115377053|ref|ZP_01464270.1| penicillin-resistant DD-carboxypeptidase [Stigmatella aurantiaca DW4/3-1] gi|310820371|ref|YP_003952729.1| penicillin-resistant dd-carboxypeptidase-like protein [Stigmatella aurantiaca DW4/3-1] gi|115365961|gb|EAU64979.1| penicillin-resistant DD-carboxypeptidase [Stigmatella aurantiaca DW4/3-1] gi|309393443|gb|ADO70902.1| penicillin-resistant DD-carboxypeptidase-like protein [Stigmatella aurantiaca DW4/3-1] Length = 303 Score = 67.9 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 40/130 (30%), Gaps = 21/130 (16%) Query: 46 SIVNDRFDNFLARVDMGIDSD-----IPIISKETIAQTEKAIAFYQDILSRGGWPELPIR 100 + +F A S I+ +T A+ A A P P Sbjct: 46 GAADGQFGPKTAAAVKAFQSAKGLVADGIVGPKTWAKLNSAAA-----------PSAPGG 94 Query: 101 P---LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G S V L+ RL G + F +AVK FQ GL G+V Sbjct: 95 SGPTLKQGQSGAPVTALQNRLNQLGF--NAGAADGQFGPKTTAAVKAFQHSKGLVADGVV 152 Query: 158 DSSTLEAMNV 167 T + + Sbjct: 153 GPKTWNQLGI 162 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Query: 98 PIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 P +P L LG+S SV+ L++ L +G + F +AVK FQ GL G+ Sbjct: 17 PSQPTLKLGSSGASVKTLQQSLAKAGFSPGAADG--QFGPKTAAAVKAFQSAKGLVADGI 74 Query: 157 VDSSTLEAMN 166 V T +N Sbjct: 75 VGPKTWAKLN 84 >gi|148807399|gb|ABR13472.1| hypothetical protein [Pseudomonas aeruginosa] Length = 268 Score = 67.9 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ S V++L+ RL + F A E AV+ FQ HGL G+ Sbjct: 2 TLRYGDRSQEVRQLQRRLNTW--AGANLYEDGHFGAATEDAVRAFQRSHGLVADGIAGPK 59 Query: 161 TLEAM 165 TL A+ Sbjct: 60 TLSAL 64 >gi|323701941|ref|ZP_08113610.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum nigrificans DSM 574] gi|323533027|gb|EGB22897.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum nigrificans DSM 574] Length = 314 Score = 67.9 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 23/158 (14%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 V+ L+ L + G ++ +D + AV+ FQ H L G+VD T Sbjct: 48 PLMQGEDVKNLQLELQVLGYY--QGPINGIYDFLTQKAVQQFQADHRLKADGVVDEPTWY 105 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 M RQ+++ + + + L G ++++ L + +GK + + G Sbjct: 106 QM-------ARQIELPVTKSETLPPPT-GQIALIIDTTKRKLTVMADGKPYKQFNIACGA 157 Query: 224 VDRQTPILHSRINRIMFNPYW-----------VIPRSI 250 + +P+ ++ N W +P I Sbjct: 158 PETPSPVGSWQVAHKAIN--WGDGFGTRWLGLNVPWGI 193 Score = 41.4 bits (96), Expect = 0.30, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V ++ L G + F +E AVK F+ +GL V+ Sbjct: 251 LVQGDRGADVYEVQRTLKRLGYYKAE--VDGIFGYQMEQAVKKFRKANGLPMDNQVNEVM 308 Query: 162 LEAM 165 +A+ Sbjct: 309 YQAL 312 >gi|296269327|ref|YP_003651959.1| peptidoglycan-binding domain 1 protein [Thermobispora bispora DSM 43833] gi|296092114|gb|ADG88066.1| Peptidoglycan-binding domain 1 protein [Thermobispora bispora DSM 43833] Length = 270 Score = 67.9 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 15/118 (12%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L LG +V+ L+ RL G + + ++AV FQ HG+ PS V Sbjct: 58 PATTLRLGAKGAAVRALQARLKELGY--HPGKIDGRYGGATQAAVWAFQKVHGIKPSSTV 115 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 T A+ P ++ L+ + R + VN+ + + G+ L Sbjct: 116 GRRTWAALERPRAPKV------------LVPRGRPDR-IEVNLTQQIMVLYKKGRPVL 160 >gi|213422205|ref|ZP_03355271.1| hypothetical protein Salmonentericaenterica_32498 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 61 Score = 67.9 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 23/43 (53%) Query: 371 VVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLD 413 +K T V + +PV+ Y++A+ D +Q+R DIY D Sbjct: 1 ALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYD 43 >gi|332799591|ref|YP_004461090.1| ErfK/YbiS/YcfS/YnhG family protein [Tepidanaerobacter sp. Re1] gi|332697326|gb|AEE91783.1| ErfK/YbiS/YcfS/YnhG family protein [Tepidanaerobacter sp. Re1] Length = 307 Score = 67.9 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 11/127 (8%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 V+ ++ +L G + +S +D AVK FQ GL+ G++ S TL+ Sbjct: 39 PPMYGHDVREIQTQLKNMGYYN--DPISGVYDNITSKAVKAFQQDMGLEVDGILGSRTLD 96 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 + Q +L E+ G +++ L +++GK + V VG+ Sbjct: 97 KI----AELFEQPVAHLE-----PEKPKGEVSLVIFTLERQLIVLDDGKPFKQFPVAVGK 147 Query: 224 VDRQTPI 230 + TPI Sbjct: 148 FNTPTPI 154 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L G+ V +++RL G + ++ + AV FQ GL PSG Sbjct: 234 TFGLNTLSQGSRGSDVLEVQKRLAGYGFYNG--DYDGIYEHETQKAVLAFQKAKGLYPSG 291 Query: 156 MVDSSTLEAMNV 167 VD++T + + + Sbjct: 292 KVDAATYKELGI 303 >gi|254506022|ref|ZP_05118167.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus 16] gi|219551245|gb|EED28225.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus 16] Length = 301 Score = 67.9 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 V++N+ L E + + V +GRV R TP + + I++ NP W P SI +K+ Sbjct: 93 VVINLAELRLYYFEPDSGLVHIFPVGIGRVGRDTPEMSTTISQKRPNPTWTPPASI-RKE 151 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 +A + P + G N + + Sbjct: 152 YLAKGIELPAVV----------------------------------PAGPENPLGEYALR 177 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 Y +H T + F +R +SGC+R+ D+ WL + + Sbjct: 178 LAYGAGDYLIHGTNKD--FGIGLR-VSSGCIRME-PKDI-DWLFPKVSLGEKVRV----- 227 Query: 374 TRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 228 INEPIKVSLEPDRSVFI 244 >gi|90577710|ref|ZP_01233521.1| hypothetical protein VAS14_11704 [Vibrio angustum S14] gi|90440796|gb|EAS65976.1| hypothetical protein VAS14_11704 [Vibrio angustum S14] Length = 300 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 64/188 (34%), Gaps = 53/188 (28%) Query: 189 QKMGLRYVLVNIPAASLEAV--ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + + ++VN+ L ++ + +GRV R+TP + + IN + NP W Sbjct: 87 PDVAHKGIVVNLAELRLYYFPKDDASKVYIFPIGIGRVGRETPSMTTSINEKVKNPTWTP 146 Query: 247 PRSI-----IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P SI + D++ + Sbjct: 147 PASIRKEHAARGDILPAVV----------------------------------------P 166 Query: 302 PGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 G N + + K+ + Y +H T + F +R + GC+R+ N D+ WL Sbjct: 167 AGPDNPLGNYKMRLAYGHGEYLIHGTNKD--FGIGMR-VSGGCIRM-NPWDV-EWLFPHV 221 Query: 361 PTWSRYHI 368 ++ I Sbjct: 222 ALGTQVRI 229 >gi|17229182|ref|NP_485730.1| cell wall-binding protein [Nostoc sp. PCC 7120] gi|17135510|dbj|BAB78056.1| cell wall-binding protein [Nostoc sp. PCC 7120] Length = 424 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ SV+ L+++L +G ++ +D E AV+ FQ GL G+V +ST Sbjct: 66 LERGDQGPSVRNLQQKLQQAGFY--QAPVTQVYDFSTEEAVRRFQAAAGLPVDGVVGAST 123 Query: 162 LEAMNV----PVDLRIRQ 175 LE ++ PV +++Q Sbjct: 124 LEKLDQWRSSPVANQVQQ 141 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V+ L++RL ++G + + F E AVK FQ + LD G+V +T Sbjct: 216 LVKGDEGEAVRSLQQRLRVAGFYYGNA--TGVFGPITEEAVKRFQTAYRLDVDGIVGPAT 273 Query: 162 LEAM 165 + + Sbjct: 274 IRRL 277 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ +V+ L+E+LI +G L + F Y AVK FQ + L SG+ + Sbjct: 298 KLTVGDRGEAVRVLQEQLIQAGYLQGQP--NGYFGPYTAEAVKRFQAANYLAASGIAGPT 355 Query: 161 TLEAM 165 T + Sbjct: 356 TRAKL 360 >gi|254514047|ref|ZP_05126108.1| general secretion pathway protein A [gamma proteobacterium NOR5-3] gi|219676290|gb|EED32655.1| general secretion pathway protein A [gamma proteobacterium NOR5-3] Length = 563 Score = 67.6 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 3/80 (3%) Query: 94 WPELP--IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P +R L LG+S V+R+ E L D P FDA +E VKLFQ + GL Sbjct: 463 WRPSPGVLRTLQLGDSGEDVRRVAE-LFARLDRQPKPLTESLFDARLEQRVKLFQQQQGL 521 Query: 152 DPSGMVDSSTLEAMNVPVDL 171 G++ +TL A+++ V Sbjct: 522 RADGVLGENTLRALSLSVGD 541 >gi|119493485|ref|ZP_01624152.1| Peptidoglycan-binding domain 1 protein [Lyngbya sp. PCC 8106] gi|119452668|gb|EAW33848.1| Peptidoglycan-binding domain 1 protein [Lyngbya sp. PCC 8106] Length = 612 Score = 67.6 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 G LP L G++ +V L++RL G D ++ FDA E AV FQ + + Sbjct: 212 GNPTPLPSGVLQQGDTGPAVGVLQQRLFRLGFYDGE--ITNYFDARTEQAVIRFQQAYRI 269 Query: 152 DPSGMVDSSTLEAM 165 P+G V +T+ + Sbjct: 270 QPTGQVGPTTVSYL 283 Score = 63.3 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 9/120 (7%) Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-------LHLG 105 + F AR + + + Q Y + G P +P P L LG Sbjct: 250 NYFDARTEQAVIRFQQAYRIQPTGQVGPTTVSYLISATGEGIPSIPTTPVANPSLPLRLG 309 Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + SV +++RL + G + S ++ FD AV FQ +G+ +G+V ++T + Sbjct: 310 DRGTSVSLVQQRLRVLGYYNGS--VNGIFDLTTRRAVLAFQQDYGISQTGVVGATTQSYL 367 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + + G+ V +++ L G + ++ + AV FQ +GL G+V Sbjct: 58 AQLITQGSRGAEVSAIQQSLQSLGFFN--ATVTGYYGPITRDAVIRFQQANGLSADGVVG 115 Query: 159 SSTLEAM 165 +TL A+ Sbjct: 116 PNTLAAL 122 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +G++ V+++++RL ++ FD + AV FQ +G+ +G+V +T Sbjct: 447 VGDTGFEVRKVQQRLRDLNYYRG--PINGFFDRTTQDAVVRFQRSNGITQTGVVGPTTRI 504 Query: 164 AM 165 M Sbjct: 505 YM 506 Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V L+ RL G + S + F + ++AV FQ + + +G+V T Sbjct: 142 LGQGDQGPGVTDLQTRLRQLGYFNTSP--TGFFGSITQNAVIRFQQANLIPATGLVSEET 199 Query: 162 LEAMN 166 L +N Sbjct: 200 LVFLN 204 >gi|189423824|ref|YP_001951001.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter lovleyi SZ] gi|189420083|gb|ACD94481.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter lovleyi SZ] Length = 448 Score = 67.6 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 49/242 (20%), Positives = 87/242 (35%), Gaps = 59/242 (24%) Query: 162 LEAMNV---PVDLRIRQL-QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 L AMN L+ QL + N RI + + +++NIP L + G + + Sbjct: 190 LAAMNGLSHKDALKAGQLLRYNNQRI--IPPHRTRDG-IVINIPDRMLYLFQQGSMAFST 246 Query: 218 TVIVGRVD------RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 V +G +TP+ +I +P W +P SI Q++M Sbjct: 247 AVALGTPTKTDQFVWETPVGKFKIVNKAKDPTWTVPPSI-QEEM---------------- 289 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST--KIEFYSRNNTYMHDTPEP 329 +GKEV + + PGK N + K +H T +P Sbjct: 290 ---RLEGKEV-ITSI--------------PPGKDNPLGKYAMKTSLP---GILIHSTTKP 328 Query: 330 ILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVP 387 ++ + + GC+RV + +L + +T Y + + + V L V Sbjct: 329 W---SIYTYASHGCIRVYPERMEELFKLVKPNTAGEIIYKPVK-LAVTEDGRVLLEAHVD 384 Query: 388 VH 389 ++ Sbjct: 385 IY 386 >gi|118581595|ref|YP_902845.1| ErfK/YbiS/YcfS/YnhG family protein [Pelobacter propionicus DSM 2379] gi|118504305|gb|ABL00788.1| ErfK/YbiS/YcfS/YnhG family protein [Pelobacter propionicus DSM 2379] Length = 346 Score = 67.6 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 48/249 (19%), Positives = 83/249 (33%), Gaps = 75/249 (30%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV------DRQTPILHSRINR 237 +K++ ++M +++NIP +L + GK+ V +G+ D TP R+ Sbjct: 130 RKIIPRRMS-HGIVINIPDRTLYYFKEGKLTTSLPVALGQPQKGATYDWMTPTGKFRVVA 188 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 +P W +PRSI + + + K V Sbjct: 189 KQTDPTWYVPRSI-----------------RSEMEARGKDVKTVVP-------------- 217 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 PG N + I+ +H T P ++ RF + GC+RV + D Sbjct: 218 ----PGPRNPLGKYAIKTSLP-GILIHSTTRPG---SIYRFASHGCIRVYPEQMKDFFNE 269 Query: 356 LLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSII--QFRDDIYGLD 413 + +TP Y PVKLA ++ + + D YG Sbjct: 270 VRVNTPGEIIYQ-----------PVKLA-------------VTEEGRVFLEVHHDAYGR- 304 Query: 414 NVHVGIIPL 422 V + + Sbjct: 305 GVELHALAR 313 >gi|291570839|dbj|BAI93111.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 225 Score = 67.6 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+SS V L+ +L G + F AVK FQ +GL G+ Sbjct: 160 KSLSHGDSSSRVANLQHKLAYYGYFHARA--TGYFGPITTKAVKAFQRDYGLRVDGVAGP 217 Query: 160 STLEAMNV 167 +TL A+ + Sbjct: 218 ATLAALGM 225 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 ++ G+S V +L+ L G + F + + +VK FQ +GL G+V + Sbjct: 63 SIYYGSSGNHVVQLQNALANHGYF--RARSTGYFGSMTKHSVKAFQRDYGLAVDGIVGPA 120 Query: 161 TLEAM 165 T A+ Sbjct: 121 TASAL 125 >gi|15828462|ref|NP_302725.1| hydrolase [Mycobacterium leprae TN] gi|221230939|ref|YP_002504355.1| putative hydrolase [Mycobacterium leprae Br4923] gi|13093892|emb|CAC32236.1| putative hydrolase [Mycobacterium leprae] gi|219934046|emb|CAR72804.1| putative hydrolase [Mycobacterium leprae Br4923] Length = 406 Score = 67.6 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 8/73 (10%) Query: 101 PLHLGNSSVSVQRLRERLIISGDL-DPSKGLSVA-------FDAYVESAVKLFQMRHGLD 152 L G+ + +V +R L G L P L+ + FD +E AV+ FQ GL Sbjct: 11 TLRCGDRNAAVTEIRSALAALGLLHSPGDDLTTSKYIALDLFDPQLEHAVRAFQQHRGLL 70 Query: 153 PSGMVDSSTLEAM 165 G+V +T A+ Sbjct: 71 VDGVVGEATHRAL 83 Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 21/166 (12%) Query: 7 INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSD 66 + + + + +L + S D++ Y ++ D FD L Sbjct: 9 GDTLRCGDRNAAVTEIRSALAALGLLHSPGDDLTTSKYIAL--DLFDPQLEHAVRAFQQH 66 Query: 67 IPIISKETI-AQTEKAI--AFYQDILSRGGWPELPIRPL--HLGN--SSVSVQRLRERLI 119 ++ + T +A+ A Y+ L R L G S V L+ RL Sbjct: 67 RGLLVDGVVGEATHRALKEASYR----------LGARTLYHRFGAPLSGDDVATLQARLQ 116 Query: 120 ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 G + F +A+ +Q +GL G+ TL ++ Sbjct: 117 DLGFYTGM--VDGHFGLQTHNALISYQREYGLTADGICGPETLRSL 160 >gi|261404540|ref|YP_003240781.1| peptidoglycan-binding domain 1 protein [Paenibacillus sp. Y412MC10] gi|261281003|gb|ACX62974.1| Peptidoglycan-binding domain 1 protein [Paenibacillus sp. Y412MC10] Length = 159 Score = 67.6 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 36/74 (48%), Gaps = 5/74 (6%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 GWP L G+S V+ L+ L SG + +F A V SAVK FQ R GL Sbjct: 36 GWPT-----LRQGSSGGYVRALQSNLWASGYQSTVGSIDGSFGAGVTSAVKAFQSREGLT 90 Query: 153 PSGMVDSSTLEAMN 166 G+V S + AMN Sbjct: 91 SDGVVGSGSWNAMN 104 >gi|254490906|ref|ZP_05104088.1| ErfK/YbiS/YcfS/YnhG family [Methylophaga thiooxidans DMS010] gi|224463815|gb|EEF80082.1| ErfK/YbiS/YcfS/YnhG family [Methylophaga thiooxydans DMS010] Length = 394 Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 55/171 (32%), Gaps = 51/171 (29%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAV-----ENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 + +L +++NI L ++ + + + +GR TP+ +RI Sbjct: 91 RFILP-DAPREGIVINIAEMRLYYYPKTAKDSLQQVVTHPIGIGREGWATPLGKTRITNK 149 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF 298 + NP W P SI +K+ + Sbjct: 150 VKNPTWTPPESI-RKE----------------------------------HLENGDPLPK 174 Query: 299 RQDPGKINAMASTKIE--FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 G N + + K+ Y +H T +P F +R + GC+R+ Sbjct: 175 VVPAGPDNPLGAYKMNLSMPG----YLLHGTNKP--FGVGLR-VSHGCIRL 218 >gi|261822001|ref|YP_003260107.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium wasabiae WPP163] gi|261606014|gb|ACX88500.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium wasabiae WPP163] Length = 340 Score = 67.2 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 46/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L ++VN+ L GK + + +G++ R TP++ + ++ NP W Sbjct: 89 MLLPDTPREGIVVNLAELRLYYYPKGKNTVIVYPIGIGQLGRNTPLMTTSVSEKRENPTW 148 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + I+K YL++ I + G Sbjct: 149 T-PTANIRK----------HYLEEQGIKL-----------------------PAVVPAGP 174 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + Y +H T F +R +SGC+R+ D+ L + P Sbjct: 175 DNPMGLHALRLSAHGGVYLLHGTNAD--FGIGMR-VSSGCIRL-RPDDI-KALFDNVPVG 229 Query: 364 SR-----YHIEEVVKTRKTTPVKLATEV 386 +R I+ V+ V++ + Sbjct: 230 TRVQILNDAIKTSVEPDGKRYVEVHQPL 257 >gi|258655499|ref|YP_003204655.1| cell wall hydrolase/autolysin [Nakamurella multipartita DSM 44233] gi|258558724|gb|ACV81666.1| cell wall hydrolase/autolysin [Nakamurella multipartita DSM 44233] Length = 383 Score = 67.2 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+ +V LR+ L L G+ SV FD V+ A++ FQ R GL G+V Sbjct: 3 LRRGDRGPAVADLRDALASLQLLPSLNGVDRGSVEFDTTVDRAIRDFQQRRGLIADGIVG 62 Query: 159 SSTLEAM 165 T ++ Sbjct: 63 PVTARSL 69 Score = 54.5 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 2/67 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L + V L+ RL G + F + +V+ FQ GL G+ Sbjct: 84 TLSAPMTGDDVMALQTRLSEMGY--NTGRPDGIFGPLTDLSVRDFQRHRGLADDGVFGPQ 141 Query: 161 TLEAMNV 167 T + +N Sbjct: 142 TYKELNR 148 >gi|125974461|ref|YP_001038371.1| peptidoglycan binding domain-containing protein [Clostridium thermocellum ATCC 27405] gi|256005183|ref|ZP_05430151.1| Peptidoglycan-binding domain 1 protein [Clostridium thermocellum DSM 2360] gi|281418988|ref|ZP_06250006.1| Peptidoglycan-binding domain 1 protein [Clostridium thermocellum JW20] gi|125714686|gb|ABN53178.1| Peptidoglycan-binding domain 1 [Clostridium thermocellum ATCC 27405] gi|255990837|gb|EEU00951.1| Peptidoglycan-binding domain 1 protein [Clostridium thermocellum DSM 2360] gi|281407445|gb|EFB37705.1| Peptidoglycan-binding domain 1 protein [Clostridium thermocellum JW20] gi|316941598|gb|ADU75632.1| Peptidoglycan-binding domain 1 protein [Clostridium thermocellum DSM 1313] Length = 360 Score = 67.2 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 8/95 (8%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 I +T++ ++ I S GG L G S SV L++ L G L S Sbjct: 86 IAGPDTLSLIKRLINERTASRSSGG------TTLKEGMSGSSVTALQKDLKALGYL--SV 137 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 + + + + AVK Q +HGL+ G+ TL Sbjct: 138 DPTGYYGSLTKEAVKKLQAKHGLEQDGIAGPKTLA 172 Score = 59.8 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V L+ L G LD + + + + +AVK Q +GL G+ T Sbjct: 34 LKEGMSGSQVTSLQRDLNTLGYLDVTP--TGYYGSLTTAAVKKLQRNYGLKEDGIAGPDT 91 Query: 162 LEAMNVPVDLR 172 L + ++ R Sbjct: 92 LSLIKRLINER 102 >gi|75910509|ref|YP_324805.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75704234|gb|ABA23910.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 305 Score = 67.2 bits (163), Expect = 6e-09, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 12/101 (11%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 S P + AQ I + + GWP L +G + V +L++RL G L Sbjct: 208 SSTPRFAPTPSAQRISGIQY-----TSEGWPI-----LRVGMKNSEVTKLQQRLSQLGFL 257 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 G+ F E A+K Q R+G++P G+ +T EA+ Sbjct: 258 KG--GVDGYFGVQTEEALKAAQRRYGIEPDGVAGGATWEAL 296 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 5/85 (5%) Query: 81 AIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 AIA Q I + + L +G+ V L+ L + G + + ++ + Sbjct: 46 AIATPQQIAQQV---VINRPTLKIGSQGERVSELQAALRLLGFYSGA--IDGVYNENTAN 100 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAM 165 AV F+ GL P G+VD+ T + + Sbjct: 101 AVSGFKQAAGLTPDGIVDAITWQRL 125 >gi|323491182|ref|ZP_08096368.1| general secretion pathway protein A [Vibrio brasiliensis LMG 20546] gi|323314550|gb|EGA67628.1| general secretion pathway protein A [Vibrio brasiliensis LMG 20546] Length = 540 Score = 67.2 bits (163), Expect = 6e-09, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 15/122 (12%) Query: 49 NDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAF-----YQDILSRGGWPELPIRPLH 103 RF A + +++ E I + + Y+ I W L Sbjct: 409 QPRFAVLYALSATKVQL---LVNDELIEFERQWLEEIWHGEYRHI-----WKGYWDETLK 460 Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G V L + L L ++ S FD +++ V+LFQ GL G+ TL Sbjct: 461 PGMQGQQVALLDKHLSQL--LGQAESDSPMFDQQLKNKVELFQRWQGLSVDGIAGQKTLR 518 Query: 164 AM 165 + Sbjct: 519 LL 520 >gi|227329828|ref|ZP_03833852.1| hypothetical protein PcarcW_21820 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 340 Score = 66.8 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 46/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L ++VN+ L GK + + +G++ R TP++ + ++ NP W Sbjct: 89 MLLPDTPREGIVVNLAELRLYYYPKGKNTVIVYPIGIGQLGRNTPLMTTSVSEKRENPTW 148 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + I+K YL++ I + G Sbjct: 149 T-PTANIRK----------HYLEEQGIKL-----------------------PAVVPAGP 174 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + Y +H T F +R +SGC+R+ D+ L + P Sbjct: 175 DNPMGLHALRLSAHGGVYLLHGTNAD--FGIGMR-VSSGCIRL-RPDDI-KALFDNVPVG 229 Query: 364 SR-----YHIEEVVKTRKTTPVKLATEV 386 +R I+ V+ V++ + Sbjct: 230 TRVQIVNDAIKTSVEPDGKRYVEVHQPL 257 >gi|253688821|ref|YP_003018011.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755399|gb|ACT13475.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 340 Score = 66.8 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 46/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L ++VN+ L GK + + +G++ R TP++ + ++ NP W Sbjct: 89 MLLPDTPREGIVVNLAELRLYYYPKGKNTVIVYPIGIGQLGRNTPLMTTSVSEKRENPTW 148 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + I+K YL++ I + G Sbjct: 149 T-PTANIRK----------HYLEEQGIKL-----------------------PAVVPAGP 174 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + Y +H T F +R +SGC+R+ D+ L + P Sbjct: 175 DNPMGLHALRLSAHGGVYLLHGTNAD--FGIGMR-VSSGCIRL-RPDDI-KALFDNVPVG 229 Query: 364 SR-----YHIEEVVKTRKTTPVKLATEV 386 +R I+ V+ V++ + Sbjct: 230 TRVQILNDAIKTSVEPDGKRYVEVHQPL 257 >gi|50120795|ref|YP_049962.1| hypothetical protein ECA1865 [Pectobacterium atrosepticum SCRI1043] gi|49611321|emb|CAG74768.1| conserved hypothetical protein [Pectobacterium atrosepticum SCRI1043] Length = 340 Score = 66.8 bits (162), Expect = 6e-09, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 72/208 (34%), Gaps = 46/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L ++VN+ L GK + + +G++ R TP++ + ++ NP W Sbjct: 89 MLLPDTPREGIVVNLAELRLYYYPKGKNTVIVYPIGIGQLGRNTPLMTTSVSEKRENPTW 148 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + I+K YL++ I + G Sbjct: 149 T-PTANIRK----------HYLEEQGIKL-----------------------PAVVPAGP 174 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + Y +H T F +R +SGC+R+ D+ L + P Sbjct: 175 DNPMGLHALRLSAHGGVYLLHGTNAD--FGIGMR-VSSGCIRL-RPDDI-KALFDNVPVG 229 Query: 364 SR-----YHIEEVVKTRKTTPVKLATEV 386 +R I+ V+ V++ + Sbjct: 230 TRVQILNDAIKTSVEPDGKRYVEVHQPL 257 >gi|17230237|ref|NP_486785.1| hypothetical protein alr2745 [Nostoc sp. PCC 7120] gi|17131838|dbj|BAB74444.1| alr2745 [Nostoc sp. PCC 7120] Length = 305 Score = 66.8 bits (162), Expect = 7e-09, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 14/110 (12%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 S P AQ I + + GWP L +G + V +L++RL G L Sbjct: 208 SSTPRFGPTPSAQRISGIQY-----TSEGWPI-----LRVGMKNSEVTKLQQRLSQLGFL 257 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM--NVPVDLR 172 S + F E A+K Q R+G++P G+ +T EA+ R Sbjct: 258 KGS--VDGYFGVQTEEALKAAQRRYGIEPDGVAGGATWEALLRRSSPQRR 305 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 5/85 (5%) Query: 81 AIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 AIA Q I + + L +G+ V L+ L + G + + ++ + Sbjct: 46 AIATPQQIAQQV---VINRPTLKIGSQGERVSELQAALRLLGFYSGA--IDGVYNENTAN 100 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAM 165 AV F+ GL P G+VD++T + + Sbjct: 101 AVSGFKQAAGLTPDGIVDAATWQRL 125 >gi|212378958|gb|ACJ24812.1| matrix metalloproteinase [Pinus taeda] Length = 364 Score = 66.8 bits (162), Expect = 7e-09, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 6/111 (5%) Query: 89 LSRGGWPELPIRPLH---LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 ++ G W R L G+ + L+ G L ++ FD VESAV+ + Sbjct: 48 VAAGAWEGF--RNLTNACKGDRMQGLPDLKRYFRRFGYLSAQNNVTEDFDEAVESAVRTY 105 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ-VNLMRIKKLLEQKMGLRY 195 Q GL+ +G++D +T+ + VP R + + MR + L G Sbjct: 106 QKNFGLNVTGVLDEATISQLMVPRCGREDIINGSSAMRGRGLFPFFPGSPR 156 >gi|186681476|ref|YP_001864672.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186463928|gb|ACC79729.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 379 Score = 66.8 bits (162), Expect = 7e-09, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ SV+ L+++L +G ++ +D + AV+ FQ GL G+V +ST Sbjct: 66 LEKGDQGPSVRNLQQKLKTAGFY--QASVTQVYDVSTQEAVRRFQKAVGLPVDGIVGAST 123 Query: 162 LEAM 165 L+ + Sbjct: 124 LQKL 127 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ SV+ ++E+LI +G L+ + + Y AV+ FQ + L SG+ + Sbjct: 255 KLRVGDRGESVRIIQEQLIQAGYLEGEP--NGYYGPYTADAVRRFQAANFLAASGVAGPT 312 Query: 161 TLEAM 165 T + Sbjct: 313 TRAKL 317 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V+ L+ERL I+G + + F E +VK FQ + L G+ +T Sbjct: 174 LAKGDEGEDVRALQERLRIAGFYYGNA--TGIFGPITEESVKRFQDSYKLSVDGIAGPAT 231 Query: 162 LEAM 165 L + Sbjct: 232 LRKL 235 >gi|89073704|ref|ZP_01160218.1| hypothetical protein SKA34_11185 [Photobacterium sp. SKA34] gi|89050479|gb|EAR55971.1| hypothetical protein SKA34_11185 [Photobacterium sp. SKA34] Length = 300 Score = 66.8 bits (162), Expect = 7e-09, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 53/188 (28%) Query: 189 QKMGLRYVLVNIPAASLEAV--ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + + ++VN+ L ++ + +GRV R+TP + + IN+ + NP W Sbjct: 87 PDVAHKGIVVNLAELRLYFFPKDDASKVYIFPIGIGRVGRETPSMTTSINQKVKNPTWTP 146 Query: 247 PRSI-----IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P SI + D++ + Q Sbjct: 147 PASIRKEHAAKGDILPAVVQ---------------------------------------- 166 Query: 302 PGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 G N + + K+ + Y +H T + F +R + GC+R+ N D+ WL Sbjct: 167 AGPDNPLGNYKMRLAYGHGEYLIHGTNKD--FGIGMR-VSGGCIRM-NPWDV-EWLFPHV 221 Query: 361 PTWSRYHI 368 ++ I Sbjct: 222 ALGTQVRI 229 >gi|297568445|ref|YP_003689789.1| Peptidoglycan-binding domain 1 protein [Desulfurivibrio alkaliphilus AHT2] gi|296924360|gb|ADH85170.1| Peptidoglycan-binding domain 1 protein [Desulfurivibrio alkaliphilus AHT2] Length = 442 Score = 66.4 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 14/89 (15%) Query: 94 WPEL-PIRPLHLGNSSVSVQRLRERLIIS-----GDLDP--------SKGLSVAFDAYVE 139 WP L P L G+ V++LR L G + + + FDA + Sbjct: 332 WPPLLPGELLQEGDQGPEVRQLRFLLQQLAAELSGHEEERAAATLAATASGADYFDAELA 391 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V FQ HGL+ G+V T + Sbjct: 392 ELVGNFQAAHGLEADGIVGPQTWRQLRRS 420 >gi|291566539|dbj|BAI88811.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 543 Score = 66.4 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 +++ T+A E I++R + P P L G+ V L+ RL G + Sbjct: 39 LLTGVTVASAESLTNRETQIVARATPTQNPTSPVLRRGSRGQDVAELQIRLRELGYFNNP 98 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F + AV+ FQ GL P G+V T +A+ Sbjct: 99 NLGN--FGPITQQAVRQFQSDRGLRPDGIVGQETRQAL 134 >gi|284050956|ref|ZP_06381166.1| peptidoglycan binding domain-containing protein [Arthrospira platensis str. Paraca] Length = 247 Score = 66.4 bits (161), Expect = 9e-09, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+SS V L+ +L G + F +VK FQ +GL G+ Sbjct: 182 KSLSHGDSSSRVANLQHKLAYYGYFHARA--TGYFGPITTKSVKAFQRDYGLKVDGVAGP 239 Query: 160 STLEAMNV 167 +TL A+ + Sbjct: 240 ATLAALGM 247 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 ++ G+S V +L+ L G + F + + +VK FQ +GL G+V + Sbjct: 85 SIYYGSSGNHVVQLQNALANHGYF--RARSTGYFGSMTKHSVKAFQRDYGLAVDGIVGPA 142 Query: 161 TLEAM 165 T A+ Sbjct: 143 TASAL 147 >gi|325290484|ref|YP_004266665.1| spore cortex-lytic enzyme [Syntrophobotulus glycolicus DSM 8271] gi|324965885|gb|ADY56664.1| spore cortex-lytic enzyme [Syntrophobotulus glycolicus DSM 8271] Length = 228 Score = 66.4 bits (161), Expect = 9e-09, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G+ L R L G+ V L++RL + G + + F +AV+LFQ HGL Sbjct: 24 GYSALGDRTLSRGSRGPEVVDLQKRLSMLGYVTGPQDG--IFGRKTNAAVRLFQKEHGLT 81 Query: 153 PSGMVDSSTLEAM 165 GM ++T+ + Sbjct: 82 VDGMAGTNTIREL 94 >gi|300934360|ref|ZP_07149616.1| putative hydrolase [Corynebacterium resistens DSM 45100] Length = 394 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 15/93 (16%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGL------------SVAFDAYVESAVKLFQMRH 149 L +G+SS V +R L G L+ +G FDA + A+K FQ + Sbjct: 6 LQVGDSSPRVAEVRGTLARLGLLEGFEGDATGLSKQRWSAKDQVFDADLAEALKAFQQQR 65 Query: 150 GLDPSGMVDSSTLEAM---NVPVDLRIRQLQVN 179 G+ GM+ S TL A+ + + R+ LQ N Sbjct: 66 GIIADGMITSGTLRALREASYTLGARVLSLQSN 98 Score = 49.8 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 15/98 (15%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN- 166 V +L+ +L G + + F +AV +Q+ +GL+ G+V +TL A++ Sbjct: 102 GDDVAQLQTQLHDLGFY--TNRIDGHFGHKTHAAVVSYQLNYGLNNDGVVGPNTLRALSY 159 Query: 167 -------VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + +I+ Q G R V+ Sbjct: 160 LGRRITGGSPQSIREK-----EQIRSAGPQLSGKRVVI 192 >gi|319653745|ref|ZP_08007842.1| hypothetical protein HMPREF1013_04460 [Bacillus sp. 2_A_57_CT2] gi|317394588|gb|EFV75329.1| hypothetical protein HMPREF1013_04460 [Bacillus sp. 2_A_57_CT2] Length = 266 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ L G+ V +++ +L +G + L + SAVK FQ + GL G+ Sbjct: 96 LKVLRYGDIGKQVIQIQYQLKQTGHYES--NLDGIYGNGTVSAVKSFQKQQGLTADGIAG 153 Query: 159 SSTLEAMNVPVD 170 T ++ Sbjct: 154 PRTRAELDRKAK 165 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L R L G+S V L++ L+ G + P + + + AVK FQ + L G Sbjct: 28 ALGDRTLANGSSGSDVAELQDYLMTKG-VFPYHTSTGYYGSITVEAVKDFQRKRHLKVDG 86 Query: 156 MVDSSTLEAMNV 167 + S T A+ V Sbjct: 87 IAGSQTSHALKV 98 >gi|258591429|emb|CBE67730.1| General secretion pathway protein A [NC10 bacterium 'Dutch sediment'] Length = 574 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 6/91 (6%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 PEL P+ G V+ LRER + FD + + V FQ L Sbjct: 487 PELSSVPIRPGARGKDVEWLRERFAEFDGVPGGGRDRQVFDNDLRTRVIAFQRSRSLTAD 546 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKK 185 G+V TL + R ++ R+++ Sbjct: 547 GVVGKETLTHL--SAAQRDPKVP----RLRR 571 >gi|78046052|ref|YP_362227.1| putative lytic enzyme [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034482|emb|CAJ22127.1| putative lytic enzyme [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 584 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 4/87 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGL 151 P L G++S V +L++ L G D F AV FQ +HGL Sbjct: 385 PASGTSALRHGDNSQDVGKLQQDLNRLGVRDAQGNRLAEDGRFGDNTREAVMAFQKQHGL 444 Query: 152 DPSGMVDSSTLEAM-NVPVDLRIRQLQ 177 G+V T A+ P R Q+ Sbjct: 445 QQDGVVGRDTRAALAAQPAQTREAQVA 471 >gi|56963694|ref|YP_175425.1| peptidoglycan binding domain-containing protein [Bacillus clausii KSM-K16] gi|56909937|dbj|BAD64464.1| peptidoglycan-binding domain-containing protein [Bacillus clausii KSM-K16] Length = 355 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 P+H G S V++L++ L+ SG L+ S +D+ V +AVK FQ + L G+ Sbjct: 58 SPIHEGEKSERVEKLQDYLVESGYLEDQD-RSHTYDSKVVAAVKQFQQDNNLLVDGIAGV 116 Query: 160 STLEAMNVPVDLRIRQLQVNL 180 TL +M V + L VN+ Sbjct: 117 QTLGSMAV-LQEGSDGLLVNM 136 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 59/170 (34%), Gaps = 10/170 (5%) Query: 13 CFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISK 72 CFF +L L V + A I V D + + Sbjct: 34 CFFFMSVLLFSLISVPEQADADTFSPIHEGEKSERVEKLQDYLVESGYLEDQDRSHTYDS 93 Query: 73 ETIAQTEKAIAFYQDILSRG--GWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 + +A ++ ++L G G L + L G+ + V L+++L Sbjct: 94 KVVAAVKQ-FQQDNNLLVDGIAGVQTLGSMAVLQEGSDGLLVNMLQKKLAQLQYY--QAD 150 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM----NVPVDLRIRQ 175 + + ++AV FQ ++GL G+ T +A+ P + R ++ Sbjct: 151 IDGYYGVLTKAAVTAFQKQNGLAVDGIAGPLTFKALYYSEAEPAEQREKK 200 >gi|284034921|ref|YP_003384852.1| cell wall hydrolase/autolysin [Kribbella flavida DSM 17836] gi|283814214|gb|ADB36053.1| cell wall hydrolase/autolysin [Kribbella flavida DSM 17836] Length = 377 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R +G+S +V + +L G L P +D AV+ FQ + GL G+V Sbjct: 7 ARIYRIGDSGEAVAEIIGKLQRLGLLAPGPRS--VYDEETAHAVRGFQQQRGLMIDGIVG 64 Query: 159 SSTLEAM 165 T A+ Sbjct: 65 PQTYRAI 71 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 33/98 (33%), Gaps = 13/98 (13%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSV----SVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 Y+ I W L R L S V L+ +L G + F + Sbjct: 68 YRAIDDA-RW-RLGDRLLTYVVSHPLTGDDVVALQAKLQELGF--AVARVDGIFGPDTQR 123 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 AV FQ GL G ST +A+ RIR + Sbjct: 124 AVTEFQRNMGLPADGTCGPSTFKAL-----QRIRPMAT 156 >gi|169632015|ref|YP_001705664.1| N-acetylmuramoyl-L-alanine amidase CwlM [Mycobacterium abscessus ATCC 19977] gi|169243982|emb|CAM65010.1| N-acetylmuramoyl-L-alanine amidase CwlM [Mycobacterium abscessus] Length = 395 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 8/75 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGL--------SVAFDAYVESAVKLFQMRHG 150 + G+ +V +RE L G L+ + FDA ++ AV+ FQ G Sbjct: 5 ASNIRHGDRGPAVTEVREVLTALGFLEDPDEVLATGRHVMVDRFDATLDDAVRAFQQCRG 64 Query: 151 LDPSGMVDSSTLEAM 165 L G+V +T + Sbjct: 65 LLVDGIVGPATYRTL 79 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 46/132 (34%), Gaps = 16/132 (12%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDS-----DIPIISKETIAQTEKAIAFYQDILSR 91 DE++ H ++ DRFD L I+ T ++A Y+ + +R Sbjct: 34 DEVLATGRH-VMVDRFDATLDDAVRAFQQCRGLLVDGIVGPATYRTLKEA--SYR-LGAR 89 Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 + + V L++RL G + F +++ +Q +GL Sbjct: 90 TLFHQFSAP-----MYGDDVATLQKRLQDLGFYTGLVDGN--FGLQTYNSLMSYQREYGL 142 Query: 152 DPSGMVDSSTLE 163 G+ TL Sbjct: 143 TADGICGPETLR 154 >gi|261213072|ref|ZP_05927356.1| hypothetical protein VCJ_003350 [Vibrio sp. RC341] gi|260838137|gb|EEX64814.1| hypothetical protein VCJ_003350 [Vibrio sp. RC341] Length = 306 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 65/202 (32%), Gaps = 57/202 (28%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK- 253 +++N+ L + V +GR+ R TP++ + I+ NP W P SI ++ Sbjct: 95 IVINLAELRLYYFRPDEGKVYIFPVGIGRIGRDTPVMQTSISSKRKNPTWTPPESIRREH 154 Query: 254 ----DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 D++ + G N + Sbjct: 155 KAKGDILPAVV----------------------------------------PAGPDNPLG 174 Query: 310 STKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 + + Y +H T + F +R +SGC+R+ + D+ WL + + I Sbjct: 175 DYAMRLAYGSGEYLIHGTNKD--FGIGMR-VSSGCIRM-DPKDI-EWLFQQVERGEKVRI 229 Query: 369 EEVVKTRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 230 -----INEPIKVALEPDRSVFI 246 >gi|229491220|ref|ZP_04385048.1| peptidoglycan-binding domain 1 protein [Rhodococcus erythropolis SK121] gi|229321958|gb|EEN87751.1| peptidoglycan-binding domain 1 protein [Rhodococcus erythropolis SK121] Length = 396 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 14/78 (17%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK--------------GLSVAFDAYVESAVKLFQM 147 L G+ +V +R L G L FD ++SAV+ FQ Sbjct: 4 LRHGDHGPAVAEIRGTLTKLGYLHHGTSGIRRESADGAHWVAPDAIFDHQLDSAVRAFQQ 63 Query: 148 RHGLDPSGMVDSSTLEAM 165 + GL G+V +T ++ Sbjct: 64 QRGLLVDGIVGPATYRSL 81 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 11/122 (9%) Query: 45 HSIVNDRFDNFL-ARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH 103 +I + + D+ + A I+ T +A Y+ + +R +L PL Sbjct: 47 DAIFDHQLDSAVRAFQQQRGLLVDGIVGPATYRSLREA--SYR-LGARTLIYQLSA-PL- 101 Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ V L+ +L G + + F ++ FQ G+ G+ TL Sbjct: 102 YGD---DVAALQAKLQDLGFY--AGRVDGFFGPQTHESLSSFQREIGIAADGICGPQTLR 156 Query: 164 AM 165 ++ Sbjct: 157 SL 158 >gi|226309507|ref|YP_002769469.1| N-acetylmuramoyl-L-alanine amidase [Rhodococcus erythropolis PR4] gi|226188626|dbj|BAH36730.1| putative N-acetylmuramoyl-L-alanine amidase [Rhodococcus erythropolis PR4] Length = 396 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 14/78 (17%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK--------------GLSVAFDAYVESAVKLFQM 147 L G+ +V +R L G L FD ++SAV+ FQ Sbjct: 4 LRHGDHGPAVAEIRGTLTKLGYLHHGTSGIRRESADGAHWVAPDAIFDHQLDSAVRAFQQ 63 Query: 148 RHGLDPSGMVDSSTLEAM 165 + GL G+V +T ++ Sbjct: 64 QRGLLVDGIVGPATYRSL 81 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 11/122 (9%) Query: 45 HSIVNDRFDNFL-ARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH 103 +I + + D+ + A I+ T +A Y+ + +R +L PL Sbjct: 47 DAIFDHQLDSAVRAFQQQRGLLVDGIVGPATYRSLREA--SYR-LGARTLIYQLSA-PL- 101 Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ V L+ +L G + + F ++ FQ G+ G+ TL Sbjct: 102 YGD---DVAALQAKLQDLGFY--AGRVDGFFGPQTHESLSSFQREIGIAADGICGPQTLR 156 Query: 164 AM 165 ++ Sbjct: 157 SL 158 >gi|256398134|ref|YP_003119698.1| cell wall hydrolase/autolysin [Catenulispora acidiphila DSM 44928] gi|256364360|gb|ACU77857.1| cell wall hydrolase/autolysin [Catenulispora acidiphila DSM 44928] Length = 381 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G+S +V +RERL G +D FD VE+AV+ FQ GMV Sbjct: 6 TYRRGDSGPAVAAIRERLARLGLIDAGSIPAQGEPVFDDAVENAVRHFQQTRRTTVDGMV 65 Query: 158 DSSTLEAM 165 T+ + Sbjct: 66 TPGTMRLL 73 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 22/143 (15%) Query: 45 HSIVNDRFDNFLARVDMGIDSDIPIISKETIA-QTEKAIAFYQD--------ILSRGGWP 95 LAR+ + IP + E A+ +Q +++ G Sbjct: 12 SGPAVAAIRERLARLGLIDAGSIPAQGEPVFDDAVENAVRHFQQTRRTTVDGMVTPGTMR 71 Query: 96 ELPIRPLHLGNSS-----------VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 L LG+ V L+ L+ G ++ A+D AV+ Sbjct: 72 LLEEASWRLGDRDLVPSPAEPPFGDDVAELQRSLLTLGF--DCGRVNGAYDPTTVGAVRE 129 Query: 145 FQMRHGLDPSGMVDSSTLEAMNV 167 FQ GL +G+ D +T++A+N Sbjct: 130 FQRNVGLPATGVTDLATVQALNR 152 >gi|119511408|ref|ZP_01630520.1| Peptidoglycan-binding domain 1 [Nodularia spumigena CCY9414] gi|119463953|gb|EAW44878.1| Peptidoglycan-binding domain 1 [Nodularia spumigena CCY9414] Length = 267 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG + V++L+ RL G L F E+AVK Q R+GL+ G+V +T Sbjct: 203 LRLGMRNSEVRKLQARLKQLGFLAGDVDGD--FGMNTEAAVKAAQQRYGLEADGVVGGAT 260 Query: 162 LEAM 165 EA+ Sbjct: 261 WEAL 264 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 2/85 (2%) Query: 81 AIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 AI Q I + L G+ V L+ L + G + + + S Sbjct: 47 AIVAPQRIAQATPTASISRPTLRFGSQGERVLELQAALKLLGFYSGA--VDGVYREETAS 104 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAM 165 AV LF+ L+P G+VD+ T E + Sbjct: 105 AVSLFKRAVALNPDGIVDAMTWERL 129 >gi|284053689|ref|ZP_06383899.1| Peptidoglycan-binding domain 1 protein [Arthrospira platensis str. Paraca] Length = 130 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS 127 +++ T+A E I++R + P P L G+ V L+ RL G + Sbjct: 11 LLTGVTVASAESLTNRETQIVARATPTQNPTSPVLRRGSRGQDVAELQIRLRELGYFNNP 70 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F + AV+ FQ GL P G+V T +A+ Sbjct: 71 NLGN--FGPITQQAVRQFQSDRGLRPDGIVGQETRQAL 106 >gi|284989789|ref|YP_003408343.1| peptidoglycan-binding domain 1 protein [Geodermatophilus obscurus DSM 43160] gi|284063034|gb|ADB73972.1| Peptidoglycan-binding domain 1 protein [Geodermatophilus obscurus DSM 43160] Length = 234 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V + RL+ + LD + F E A + FQ HGL G+V T Sbjct: 167 LRRGDRGAAVATWQWRLVQA--LDRQVDVDEVFGPMTEQATRDFQSAHGLAVDGVVGPRT 224 Query: 162 LEAM 165 AM Sbjct: 225 RAAM 228 >gi|160935923|ref|ZP_02083297.1| hypothetical protein CLOBOL_00816 [Clostridium bolteae ATCC BAA-613] gi|158441165|gb|EDP18882.1| hypothetical protein CLOBOL_00816 [Clostridium bolteae ATCC BAA-613] Length = 533 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G ++RL++RL+ G +D + + F + AVK FQ ++ L G+V + T Sbjct: 81 LRIGVRHEIIKRLQQRLMDLGFMD-NDEPTDYFGEMTQQAVKHFQRQNELPTDGIVGNVT 139 Query: 162 LEAMNVPVDLR 172 +A+ + D + Sbjct: 140 WDAI-MSPDAK 149 Score = 63.3 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V +ERL G L + A+ AVK FQ R+ G + ST Sbjct: 226 LSYGEKSDVVLACQERLKELGYLTTTPDG--AYGEDTVVAVKQFQARNDQVVDGYLGPST 283 Query: 162 LEAMNVPVDLRIRQLQV 178 A+N D R L + Sbjct: 284 RIALN-SPDARANGLML 299 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 13/101 (12%) Query: 78 TEKAIAFYQD--------ILSRGGW-----PELPIRPLHLGNSSVSVQRLRERLIISGDL 124 T++A+ +Q I+ W P+ + G ++R+++RL G L Sbjct: 116 TQQAVKHFQRQNELPTDGIVGNVTWDAIMSPDAKYYAVSKGTQGDDIERIQQRLYELGYL 175 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + ++ F E+AV Q +GL+ G V T+ + Sbjct: 176 ATADLVTGNFGDSTEAAVLKLQEVNGLEQDGKVGQRTINLL 216 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+ L LG +V ++++ L G L ++ + E+AV+ FQ R+GL Sbjct: 290 PDARANGLMLGERGDAVTKVQQLLNKHGYLVSGN-VTGYYGEATENAVRNFQSRNGLTSD 348 Query: 155 GMVDSSTLEAMNVPVDLR 172 G+V T+ + R Sbjct: 349 GLVGVQTMAKLTGDNVRR 366 >gi|115380132|ref|ZP_01467166.1| hypothetical protein STIAU_0960 [Stigmatella aurantiaca DW4/3-1] gi|310822017|ref|YP_003954375.1| hypothetical protein STAUR_4769 [Stigmatella aurantiaca DW4/3-1] gi|115362855|gb|EAU62056.1| hypothetical protein STIAU_0960 [Stigmatella aurantiaca DW4/3-1] gi|309395089|gb|ADO72548.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 529 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 4/75 (5%) Query: 102 LHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V+ L+ RL G +L G F E+AVK FQ +H L+ G+V Sbjct: 235 LKEGSKGTEVKTLQGRLEKLGFELGQQDG---VFGPKTEAAVKRFQSKHNLEADGIVGPK 291 Query: 161 TLEAMNVPVDLRIRQ 175 T +A+ + R Q Sbjct: 292 THQAIEKALSARTEQ 306 Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 38/108 (35%), Gaps = 19/108 (17%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPI--------RPLHLGNSSVSVQRLRERLII 120 I K A+TE+A S W + P L G SV+ L++ L + Sbjct: 295 AIEKALSARTEQAKRQSDAFESGSKWKDAPALADVKSGKEHLQQGMEGGSVKHLQKLLGV 354 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGL---DPSGMVDSSTLEAM 165 D F AV FQ H L D +G V TL AM Sbjct: 355 ETD--------GKFGPNTRKAVAEFQREHRLDVGDAAGSVGPKTLAAM 394 >gi|84385389|ref|ZP_00988421.1| uncharacterized protein conserved in bacteria [Vibrio splendidus 12B01] gi|84379986|gb|EAP96837.1| uncharacterized protein conserved in bacteria [Vibrio splendidus 12B01] Length = 353 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 66/187 (35%), Gaps = 43/187 (22%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L + +++N+ L E K V +GRV R TP + ++I++ NP Sbjct: 134 RLILP-DTPRKGIVINLAELRLYYFEPEKNQVHVFPVGIGRVGRDTPEMITKISQKRPNP 192 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI +K+ + + P+ + Sbjct: 193 TWTPPNSI-RKEYLEKGIELPRVV----------------------------------PA 217 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 G N + + Y +H T + F +R +SGC+R+ D+ WL + Sbjct: 218 GPENPLGEYALRLAYGAGDYLIHGTNKD--FGIGLR-VSSGCIRME-PKDI-EWLFEQVS 272 Query: 362 TWSRYHI 368 + I Sbjct: 273 RGEQVTI 279 >gi|332982629|ref|YP_004464070.1| spore cortex-lytic enzyme [Mahella australiensis 50-1 BON] gi|332700307|gb|AEE97248.1| spore cortex-lytic enzyme [Mahella australiensis 50-1 BON] Length = 235 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L+ G V ++ +L G D S + +AV+ FQ ++GL G+V Sbjct: 34 TGNLYYGAKGDKVAEVQRKLKQWGYYDGPVDAS--YGPKTFAAVQQFQRKNGLKVDGVVG 91 Query: 159 SSTLEAMNVPVDL 171 +T AM V ++ Sbjct: 92 PATAAAMGVTLNT 104 >gi|148974051|ref|ZP_01811584.1| hypothetical protein VSWAT3_13027 [Vibrionales bacterium SWAT-3] gi|145965748|gb|EDK30996.1| hypothetical protein VSWAT3_13027 [Vibrionales bacterium SWAT-3] Length = 319 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 71/207 (34%), Gaps = 56/207 (27%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L + +++N+ L E K V +GR+ R TP + ++I++ NP Sbjct: 100 RLILP-DTPRKGIVINLAELRLYYFEPEKNQVHVFPVGIGRIGRDTPEMITKISQKRPNP 158 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P+SI +++ + + P+ + Sbjct: 159 TWTPPKSI-REEYLEKGIELPKVV----------------------------------PA 183 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 G N + + Y +H T + F +R +SGC+R+ P Sbjct: 184 GPENPLGEYALRLAYGAGDYLIHGTNKD--FGIGLR-VSSGCIRME-------------P 227 Query: 362 TWSRYHIEEVVKTRKTTPVKLATEVPV 388 + E+V + + T + + V Sbjct: 228 KDIEWLFEQVSRGEQVTFIN--EPIKV 252 >gi|225024391|ref|ZP_03713583.1| hypothetical protein EIKCOROL_01266 [Eikenella corrodens ATCC 23834] gi|224942888|gb|EEG24097.1| hypothetical protein EIKCOROL_01266 [Eikenella corrodens ATCC 23834] Length = 310 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 59/163 (36%), Gaps = 41/163 (25%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V++NIP L ENG++ V VG+ +TP+ + I +NP W IP SI ++ Sbjct: 33 QHVVINIPQMRLFLYENGQLKNVYPVAVGKNRTRTPLGNYHIGSKAYNPTWSIPASIRRE 92 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 A L + + + PG N + + Sbjct: 93 RAAAGLPE---------------------ISSI--------------PPGPSNPLGPVFV 117 Query: 314 EF-YSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLD 353 R +H T P +V + GCVR+ N + Sbjct: 118 RLGPPRLGLGIHGTNAP---ASVPGIRSHGCVRMHSNNALQFA 157 >gi|108805098|ref|YP_645035.1| cell wall hydrolase/autolysin [Rubrobacter xylanophilus DSM 9941] gi|108766341|gb|ABG05223.1| cell wall hydrolase/autolysin [Rubrobacter xylanophilus DSM 9941] Length = 358 Score = 65.6 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 30/67 (44%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +R L G+ V L+ RL G ++G+ F E AV+ FQ R G+ G+V Sbjct: 1 MRTLRRGDRGREVVDLQTRLQALGYDLGNRGIDGVFREETELAVRAFQQRVGILADGLVG 60 Query: 159 SSTLEAM 165 T + Sbjct: 61 PVTWREL 67 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 12/84 (14%) Query: 94 WPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W EL G V ++ L G ++ FD AV+ Sbjct: 64 WRELVEAGYRPGGRLLYLRQPPFRGADVMEMQRMLNDLGF--DPGAVNGLFDGRTARAVR 121 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNV 167 FQ GL P G+VD + + +++ Sbjct: 122 DFQKNAGLQPDGVVDGAVFKTLSI 145 >gi|302388464|ref|YP_003824286.1| Peptidoglycan-binding domain 1 protein [Clostridium saccharolyticum WM1] gi|302199092|gb|ADL06663.1| Peptidoglycan-binding domain 1 protein [Clostridium saccharolyticum WM1] Length = 510 Score = 65.6 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G V L+ERL+ G +D + F E+AVK +Q ++GL G+V T Sbjct: 86 LRNGVEHPVVASLQERLMDLGFMDNDEPTH-YFGNVTEAAVKTYQRQNGLVQDGIVGPET 144 Query: 162 LEAMNVPVDLR 172 L ++ + + Sbjct: 145 LNSI-MSPSAK 154 Score = 60.2 bits (145), Expect = 7e-07, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 14/97 (14%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 I+ ET+ A Y + G + R++ RL G L + Sbjct: 139 IVGPETLNSIMSPSAKYYAVSK--------------GVEGEDISRIQSRLYELGYLASAG 184 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +S +F E+AVK Q +GL+ G V T+ + Sbjct: 185 QVSGSFGDETEAAVKKLQEVNGLNIDGKVGRQTINLL 221 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG SV R+++ L G L S ++ + E AVK FQ +GL G V T Sbjct: 302 LTLGEQGDSVTRIQQLLNKYGYL-ASSNVTGYYGEVTEKAVKAFQSNNGLTADGSVGQLT 360 Query: 162 LEAM 165 + + Sbjct: 361 MGKL 364 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V ++RL G L + A+ +AVK FQ R+ L G + ST Sbjct: 231 LAYGEKSDVVLTSQQRLKELGYLITAPDG--AYGDDTVTAVKQFQSRNDLVVDGYLGPST 288 Query: 162 L 162 Sbjct: 289 R 289 >gi|154497714|ref|ZP_02036092.1| hypothetical protein BACCAP_01690 [Bacteroides capillosus ATCC 29799] gi|150273212|gb|EDN00357.1| hypothetical protein BACCAP_01690 [Bacteroides capillosus ATCC 29799] Length = 224 Score = 65.6 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G++ +V+ ++ +L G + + + E AVK FQ ++GL G+ +T Sbjct: 33 YRQGSTGDAVRTIQTKLSNWGYFSGA--IDGIYGPKTEEAVKYFQRKNGLTADGVAGPAT 90 Query: 162 LEAMNVP 168 L A+ + Sbjct: 91 LRALGMS 97 >gi|83643225|ref|YP_431660.1| hypothetical protein HCH_00323 [Hahella chejuensis KCTC 2396] gi|83631268|gb|ABC27235.1| uncharacterized protein conserved in bacteria [Hahella chejuensis KCTC 2396] Length = 315 Score = 65.6 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 33/168 (19%), Positives = 62/168 (36%), Gaps = 40/168 (23%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS-TVIVGRVDRQTPILHSRINRIMFNP 242 + +L + +L+N+ L + K L + + +G VD TPI+ ++I M NP Sbjct: 88 RFILPPGL-RNGILINLAEYRLYYFQPDKKRLYTVPIGIGTVDFPTPIMDTKIVTRMKNP 146 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI Q+ + DE G+++ Sbjct: 147 TWYPPESIRQRQL-------------------DEYGEQLPRAV---------------PA 172 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 G N + + + ++ +H T + +R + GC+R+ N Sbjct: 173 GPDNPLGAYAFKL-DADSYLIHGT-NKGV-GIGMR-VSHGCIRLYNWD 216 >gi|288554208|ref|YP_003426143.1| endopeptidase, cell wall lytic activity [Bacillus pseudofirmus OF4] gi|288545368|gb|ADC49251.1| endopeptidase, cell wall lytic activity [Bacillus pseudofirmus OF4] Length = 393 Score = 65.6 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + L +G + V L+E L G + + + AV+ FQ +GL G Sbjct: 25 ALGDQTLRVGMNHTDVTELQEALKSKGYFTFDRATG-YYGSITADAVRKFQASNGLKVDG 83 Query: 156 MVDSSTLEAM 165 + T A+ Sbjct: 84 IAGPQTFAAL 93 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V RL++RL G + + + +V+ FQ + L G+ T Sbjct: 191 LRQGTRSAEVTRLQDRLRQLGYFNS--NSTGYYGTVTTESVRRFQAVNKLQVDGVAGPQT 248 Query: 162 LEAM 165 L + Sbjct: 249 LSRL 252 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 10/122 (8%) Query: 44 YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH 103 Y SI D F A + +D I +T A + + S L Sbjct: 62 YGSITADAVRKFQASNGLKVDG---IAGPQTFAALKANGSTVTAASSNT-----SSATLR 113 Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G +V L+++L G + + F E AV+ FQ GL G+ T Sbjct: 114 TGARGAAVTNLQQQLRNHGHFSSA--VDGVFGPLTERAVRSFQSARGLSVDGIAGPQTFS 171 Query: 164 AM 165 A+ Sbjct: 172 AL 173 >gi|326204425|ref|ZP_08194283.1| NLP/P60 protein [Clostridium papyrosolvens DSM 2782] gi|325985457|gb|EGD46295.1| NLP/P60 protein [Clostridium papyrosolvens DSM 2782] Length = 508 Score = 65.6 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +P+ +LG+ + + + ++RL G L + S +D AVK FQ +GL Sbjct: 203 KAVPM-SFYLGDENKEILQYKQRLYELGYL--TAKPSGKYDNDTVQAVKRFQENNGLIAD 259 Query: 155 GMVDSSTLEAM 165 G + T + + Sbjct: 260 GFIGPVTKDLL 270 Score = 63.3 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + LG VQ+L+ERL G + + G F + AVK FQ R+GL G V Sbjct: 138 TVSLGAEGTDVQQLQERLYELGYMGKATG---YFGTDTDIAVKDFQKRNGLFDDGNVGKQ 194 Query: 161 TLEAM 165 T E + Sbjct: 195 TREVL 199 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+S V +++ L G L K ++ F + +AV FQ ++GL G + S T Sbjct: 280 LDIGDSGDDVTKVQTYLKKLGYL---KSVTGYFGSDTHNAVLKFQSKNGLGKDGKIGSQT 336 Query: 162 LEAMNVPVDLR 172 + + + D + Sbjct: 337 IAKL-LSPDAK 346 >gi|254416303|ref|ZP_05030057.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] gi|196176985|gb|EDX71995.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] Length = 320 Score = 65.6 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ V +++RL G D + F AV+ FQ GL P G+V Sbjct: 59 AQTLQPGSRGSQVIEIQQRLRELGYFDQQP--TGYFGPITTEAVQQFQRSQGLIPDGIVG 116 Query: 159 SSTLEAM 165 T + Sbjct: 117 QRTQSVL 123 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V L+ +L +G DP + + + ++AV+ FQ + L P G+ + Sbjct: 182 RELRPGDRGQEVFELQLKLRQAGF-DPGR-VDGIYGFQTQNAVEQFQEANNLFPDGVANQ 239 Query: 160 STLEAM 165 TL+A+ Sbjct: 240 DTLQAL 245 >gi|254228730|ref|ZP_04922153.1| ErfK/YbiS/YcfS/YnhG family [Vibrio sp. Ex25] gi|262396548|ref|YP_003288401.1| hypothetical protein VEA_001253 [Vibrio sp. Ex25] gi|151938677|gb|EDN57512.1| ErfK/YbiS/YcfS/YnhG family [Vibrio sp. Ex25] gi|262340142|gb|ACY53936.1| hypothetical protein VEA_001253 [Vibrio sp. Ex25] Length = 308 Score = 65.6 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 47/204 (23%) Query: 189 QKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + +++N+ L G+ + V +GR+ R TP++ +RI++ NP W P Sbjct: 97 PDVPHKGIVINLAELRLYYFPKGEDIVHVFPVGIGRIGRDTPVMTTRISQKRPNPTWTPP 156 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI + + A P + G N Sbjct: 157 ASI-RAEYKAKGIDLPTVV----------------------------------PAGPDNP 181 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 + + N Y +H T + F +R ++GC+R+ + D+ WL + Sbjct: 182 LGMFALRLAYGNGEYLIHGTNKD--FGIGMR-VSAGCIRM-DPSDI-EWLFEKVRNGEEV 236 Query: 367 HIEEVVKTRKTTPVKLATEVPVHF 390 +I + V L + V Sbjct: 237 NI-----INQPVKVSLEPDRSVFL 255 >gi|20808596|ref|NP_623767.1| LysM repeat-containing protein [Thermoanaerobacter tengcongensis MB4] gi|254479061|ref|ZP_05092416.1| LysM domain protein [Carboxydibrachium pacificum DSM 12653] gi|20517226|gb|AAM25371.1| LysM-repeat proteins and domains [Thermoanaerobacter tengcongensis MB4] gi|214035017|gb|EEB75736.1| LysM domain protein [Carboxydibrachium pacificum DSM 12653] Length = 324 Score = 65.6 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L LG+ V L+ RL G + F E+AVK +Q GL P+ Sbjct: 172 PPVEYPTLRLGDRGPFVVNLQARLKSLGF--DPGPIDGIFGPKTEAAVKAYQQSRGLPPT 229 Query: 155 GMVDSSTLEAM 165 G+VD +T A+ Sbjct: 230 GIVDETTWNAL 240 >gi|121534863|ref|ZP_01666682.1| ErfK/YbiS/YcfS/YnhG family protein [Thermosinus carboxydivorans Nor1] gi|121306462|gb|EAX47385.1| ErfK/YbiS/YcfS/YnhG family protein [Thermosinus carboxydivorans Nor1] Length = 211 Score = 65.2 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 14/151 (9%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + G S V L+ L I G + + FDA +A+ FQ GL +G Sbjct: 11 RLDTTRIGEGASGPLVAELQHILAIRGHYNGE--IHGRFDAETRAALARFQEEQGLPVTG 68 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK----MGLRYVLVNIPAASLEAVENG 211 + T + ++ V+ + + ++L+ L E+ Sbjct: 69 ELTPLTFCRL-----QAAEKISVD---PAPQPPARGKSSLSRPHILITKAKRQLTLFESN 120 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + V +G+ TP+ + I + NP Sbjct: 121 TPFRQWPVAIGKPHTPTPVGNFAIAAKIMNP 151 >gi|300866800|ref|ZP_07111480.1| Peptidoglycan-binding domain 1 (fragment) [Oscillatoria sp. PCC 6506] gi|300335209|emb|CBN56640.1| Peptidoglycan-binding domain 1 (fragment) [Oscillatoria sp. PCC 6506] Length = 491 Score = 65.2 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G+ V L++ L G + +DA +AV+ FQ GL G+ Sbjct: 51 PALALRRGDRGPEVVELQKNLQTRGYYAGE--TTGFYDAATRAAVRKFQQEKGLRVDGIA 108 Query: 158 DSSTLEAM 165 TL + Sbjct: 109 GRRTLSKL 116 >gi|319949441|ref|ZP_08023502.1| N-acetylmuramoyl-L-alanine amidase cwlM [Dietzia cinnamea P4] gi|319436903|gb|EFV91962.1| N-acetylmuramoyl-L-alanine amidase cwlM [Dietzia cinnamea P4] Length = 396 Score = 65.2 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 14/77 (18%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKG--------------LSVAFDAYVESAVKLFQMR 148 G+ V +R L G L FDA +E+AV FQ Sbjct: 4 RRGDRGPEVAAIRATLAGMGLLHNIDSVGVTEPETGSVLARTDAVFDADLETAVLAFQQA 63 Query: 149 HGLDPSGMVDSSTLEAM 165 GL G+V +T A+ Sbjct: 64 RGLISDGIVGPATQAAL 80 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 7/123 (5%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKETI-AQTEKAIAFYQDILSRGGWPELPIRPLHL 104 + + FD L + +IS + T+ A+ +L + +P Sbjct: 43 ARTDAVFDADLETAVLAFQQARGLISDGIVGPATQAALDDASHVLGTRDLSYIVSKP--- 99 Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 + V +L+ RL G + + F A +AV FQ L+ G+V + TL+ Sbjct: 100 -MAGDDVAQLQRRLGELGFY--AGLVDGTFGALTHAAVTDFQRDCALEADGVVGAETLDT 156 Query: 165 MNV 167 +N Sbjct: 157 INR 159 >gi|332711428|ref|ZP_08431360.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332349977|gb|EGJ29585.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 269 Score = 65.2 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 LPI L G +VQ+L+ RL G L + F ++AV+ Q + L+P G Sbjct: 202 TLPI--LRQGMRGPAVQQLQRRLKSLGFLK--ATVDGVFGEVTKAAVQAAQRKFKLEPDG 257 Query: 156 MVDSSTLEAM 165 +V +T A+ Sbjct: 258 IVGPATWNAL 267 Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ V L+ L + G ++ + AV Q GL P G++ ++ Sbjct: 53 TLDIGSEGERVSELQAVLKLLGYYTGE--VNGFYGDNTAIAVSKLQREAGLTPHGIMGAA 110 >gi|304386762|ref|ZP_07369030.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis ATCC 13091] gi|304339162|gb|EFM05248.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis ATCC 13091] Length = 365 Score = 65.2 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 74/233 (31%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + G N + + Sbjct: 107 ---------------------RGDGVKTI------------------AAGPDNPLGPVFV 127 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P +V + GCVR+++ L + + Sbjct: 128 RLGDPKLGLGIHGTNAP---ASVPGVRSHGCVRMKSPDAL--------------EFAKTI 170 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 + V +Y A +D+ + FR D YG +N+ + + Sbjct: 171 ASGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDIASL 212 >gi|325202722|gb|ADY98176.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis M01-240149] gi|325208718|gb|ADZ04170.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis NZ-05/33] Length = 358 Score = 65.2 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 74/233 (31%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + G N + + Sbjct: 107 ---------------------RGDGVKTI------------------AAGPDNPLGPVFV 127 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P +V + GCVR+++ L + + Sbjct: 128 RLGDPKLGLGIHGTNAP---ASVPGVRSHGCVRMKSPDAL--------------EFAKTI 170 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 + V +Y A +D+ + FR D YG +N+ + + Sbjct: 171 ASGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDIASL 212 >gi|325128783|gb|EGC51645.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis N1568] Length = 344 Score = 65.2 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 74/233 (31%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 33 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSIQKE 92 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + G N + + Sbjct: 93 ---------------------RGDGVKTI------------------AAGPDNPLGPVFV 113 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P +V + GCVR+++ L + + Sbjct: 114 RLGDPKLGLGIHGTNAP---ASVPGVRSHGCVRMKSPDAL--------------EFAKTI 156 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 + V +Y A +D+ + FR D YG +N+ + + Sbjct: 157 ASGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDIASL 198 >gi|317131428|ref|YP_004090742.1| spore cortex-lytic enzyme [Ethanoligenens harbinense YUAN-3] gi|315469407|gb|ADU26011.1| spore cortex-lytic enzyme [Ethanoligenens harbinense YUAN-3] Length = 231 Score = 65.2 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 LG++ V++++ RL G + + + A +AV FQ ++GL G+ S+TL Sbjct: 41 RLGSTGSEVRQIQTRLKSWGYYTGT--VDGVYGAGTRAAVIAFQRKNGLTADGVAGSATL 98 Query: 163 EAMNVPV 169 A+ +P Sbjct: 99 RAIGLPA 105 >gi|15676382|ref|NP_273518.1| hypothetical protein NMB0471 [Neisseria meningitidis MC58] gi|7225699|gb|AAF40908.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|316984751|gb|EFV63710.1| conserved hypothetical protein [Neisseria meningitidis H44/76] gi|325140891|gb|EGC63400.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis CU385] gi|325199656|gb|ADY95111.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis H44/76] Length = 358 Score = 65.2 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 74/233 (31%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + G N + + Sbjct: 107 ---------------------RGDGVKTI------------------AAGPDNPLGPVFV 127 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P +V + GCVR+++ L + + Sbjct: 128 RLGDPKLGLGIHGTNAP---ASVPGVRSHGCVRMKSPDAL--------------EFAKTI 170 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 + V +Y A +D+ + FR D YG +N+ + + Sbjct: 171 ASGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDIASL 212 >gi|121635388|ref|YP_975633.1| hypothetical protein NMC1677 [Neisseria meningitidis FAM18] gi|161870603|ref|YP_001599775.1| hypothetical protein NMCC_1671 [Neisseria meningitidis 053442] gi|218768765|ref|YP_002343277.1| hypothetical protein NMA2014 [Neisseria meningitidis Z2491] gi|254805501|ref|YP_003083722.1| hypothetical protein NMO_1571 [Neisseria meningitidis alpha14] gi|120867094|emb|CAM10860.1| hypothetical protein NMC1677 [Neisseria meningitidis FAM18] gi|121052773|emb|CAM09119.1| hypothetical protein NMA2014 [Neisseria meningitidis Z2491] gi|161596156|gb|ABX73816.1| conserved hypothetical protein [Neisseria meningitidis 053442] gi|254669043|emb|CBA07504.1| conserved hypothetical protein [Neisseria meningitidis alpha14] gi|254670599|emb|CBA06543.1| hypothetical protein NME_1166 [Neisseria meningitidis alpha153] gi|254672572|emb|CBA06223.1| hypothetical protein NMW_0790 [Neisseria meningitidis alpha275] gi|261391984|emb|CAX49448.1| conserved hypothetical periplasmic protein [Neisseria meningitidis 8013] gi|308388672|gb|ADO30992.1| hypothetical protein NMBB_0524 [Neisseria meningitidis alpha710] gi|319411005|emb|CBY91403.1| conserved hypothetical periplasmic protein [Neisseria meningitidis WUE 2594] gi|325130769|gb|EGC53504.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis OX99.30304] gi|325134836|gb|EGC57472.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis M13399] gi|325136857|gb|EGC59455.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis M0579] gi|325138839|gb|EGC61390.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis ES14902] gi|325142905|gb|EGC65267.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis 961-5945] gi|325198847|gb|ADY94303.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis G2136] gi|325203575|gb|ADY99028.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis M01-240355] gi|325205535|gb|ADZ00988.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis M04-240196] Length = 358 Score = 65.2 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 74/233 (31%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + G N + + Sbjct: 107 ---------------------RGDGVKTI------------------AAGPDNPLGPVFV 127 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P +V + GCVR+++ L + + Sbjct: 128 RLGDPKLGLGIHGTNAP---ASVPGVRSHGCVRMKSPDAL--------------EFAKTI 170 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 + V +Y A +D+ + FR D YG +N+ + + Sbjct: 171 ASGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDIASL 212 >gi|290967813|ref|ZP_06559366.1| 3D domain protein [Megasphaera genomosp. type_1 str. 28L] gi|290782172|gb|EFD94747.1| 3D domain protein [Megasphaera genomosp. type_1 str. 28L] Length = 170 Score = 65.2 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + +G S +VQRL+ LI +G L S G F A AV FQ GLD G+V + T Sbjct: 1 MEMGMSGAAVQRLQYMLIDAGYL--SDGADGVFGAATRDAVTRFQAAKGLDADGVVGTRT 58 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKL 186 L A+ + N+ +++ Sbjct: 59 LTALAETGKKKTNNSAQNIWGKRRM 83 >gi|260774029|ref|ZP_05882944.1| hypothetical protein VIB_002508 [Vibrio metschnikovii CIP 69.14] gi|260610990|gb|EEX36194.1| hypothetical protein VIB_002508 [Vibrio metschnikovii CIP 69.14] Length = 306 Score = 65.2 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 71/197 (36%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++VN+ L N + V +GR+ R TP + ++I+++ NP W P+S ++ + Sbjct: 96 IVVNLAELRLYYFPPNTQQVHIFPVGIGRIGRDTPEMTTQISQMRRNPTWTPPQS-VRNE 154 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + P + G N M + + Sbjct: 155 YLQRGIELPAVV----------------------------------PAGPDNPMGNYAMR 180 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y +H T + F +R ++GC+R+ + D+ WL + I + Sbjct: 181 LAYGSGEYLIHGTNKD--FGIGMR-VSAGCIRM-DPKDI-EWLFHQVDRGVKVRIID--- 232 Query: 374 TRKTTPVKLATEVPVHF 390 + V L + V+ Sbjct: 233 --EPIKVTLEPDRSVYL 247 >gi|167584280|ref|ZP_02376668.1| putative phage-encoded peptidoglycan binding protein [Burkholderia ubonensis Bu] Length = 268 Score = 65.2 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ LG+ V L+ RLI +G + ++ +D ESAVK Q GL G+ Sbjct: 1 MKTHRLGDQGDDVGLLQRRLIRAGY---ALDVTHVYDEATESAVKAVQTEAGLVVDGIAG 57 Query: 159 SSTLEAM 165 TL A+ Sbjct: 58 PKTLAAI 64 >gi|317492238|ref|ZP_07950667.1| ykud domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919577|gb|EFV40907.1| ykud domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 333 Score = 65.2 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 66/208 (31%), Gaps = 47/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L +++N+ L G+ + + +G++ R TP + + +++ + NP W Sbjct: 90 MLLPDAPREGIVINLAEMRLFYYPKGEGKVVVYPIGIGQLGRNTPEMVTSVSQSIANPTW 149 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +I + E G Sbjct: 150 TPTANI-----------------RKHYK------------------AEGVTLPAVVPAGP 174 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + ++ Y +H T F +R +SGC+R+ D+ L K P Sbjct: 175 ENPMGLFALRLSAQGGVYLIHGTNAN--FGIGMR-VSSGCIRL-RPDDI-EALFKTVPKG 229 Query: 364 SRYHIEEV-----VKTRKTTPVKLATEV 386 +R I V+ V++ + Sbjct: 230 TRVQIVNAPVKVSVEPDGKRYVEVHQPL 257 >gi|290475508|ref|YP_003468396.1| LysM domain-containing protein [Xenorhabdus bovienii SS-2004] gi|289174829|emb|CBJ81630.1| putative enzyme with LysM domain [Xenorhabdus bovienii SS-2004] Length = 356 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 75/210 (35%), Gaps = 48/210 (22%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKV-GLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + LL + + +++N+ L GK + + +G+++R TP + + +++++ NP Sbjct: 92 QMLLPDTL-RQGIIINLAEFRLYYFPKGKNYVVVYPIGIGQLERDTPTMTTSVSQLIKNP 150 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P + I+KD I + Sbjct: 151 TWT-PTTNIRKDY-----------ASRGIIL-----------------------PTVVPA 175 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 G N M + + Y +H T F +R +SGC+R+ D++ L P Sbjct: 176 GADNPMGDFALRLAAGRGEYLIHGTNAN--FGIGMR-VSSGCIRL-RPDDIEN-LFYSVP 230 Query: 362 TWSR-----YHIEEVVKTRKTTPVKLATEV 386 +R I+ V+ V++ + Sbjct: 231 RGTRVQVINEPIKYTVEPTGKRYVEIHQPL 260 >gi|218508835|ref|ZP_03506713.1| putative peptidoglycan binding protein (involved in cell wall degradation) [Rhizobium etli Brasil 5] Length = 62 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 28/45 (62%), Positives = 35/45 (77%) Query: 370 EVVKTRKTTPVKLATEVPVHFVYISAWSPKDSIIQFRDDIYGLDN 414 +V+ T TP+KLATEVPV++VYISAW D I+QFRDDIY +D Sbjct: 1 QVIATGVNTPIKLATEVPVYYVYISAWGMPDGIVQFRDDIYQMDG 45 >gi|304313095|ref|YP_003812693.1| General secretion pathway protein-related protein, ATPase [gamma proteobacterium HdN1] gi|301798828|emb|CBL47061.1| General secretion pathway protein-related protein, ATPase [gamma proteobacterium HdN1] Length = 632 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 9/90 (10%) Query: 94 WPELPIR---PLHLGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQ 146 W ++P PL G S V LR L DLD + +D + VK FQ Sbjct: 541 W-QVPASYRAPLMPGVISPLVPWLRNGLSQL-DLDVSEVAGQASGSLYDPALVERVKAFQ 598 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 + G G+V TL + +D + +L Sbjct: 599 RKQGEPADGIVGEMTLILLTRELDAHLPKL 628 >gi|111020641|ref|YP_703613.1| N-acetylmuramoyl-L-alanine amidase [Rhodococcus jostii RHA1] gi|110820171|gb|ABG95455.1| probable N-acetylmuramoyl-L-alanine amidase [Rhodococcus jostii RHA1] Length = 399 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 14/78 (17%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLS--------------VAFDAYVESAVKLFQM 147 L G+ +V +R L G L + FD +++SAV+ FQ Sbjct: 4 LRHGDHGPAVAEIRGTLAGLGFLHNGVADTRREGTNGSHWIAPDAVFDHHLDSAVRAFQQ 63 Query: 148 RHGLDPSGMVDSSTLEAM 165 + GL G+V +T +M Sbjct: 64 QRGLLVDGIVGPATYRSM 81 Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 10/97 (10%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 I+ T ++A Y+ + +R +L PL G+ V L+ RL G Sbjct: 72 IVGPATYRSMKEA--SYR-LGARTLIYQLSA-PL-YGD---DVATLQTRLQDLGFYVG-- 121 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F ++ FQ G+ G+ +TL ++ Sbjct: 122 RVDGFFGPQTHDSLSSFQREIGIAADGICGPATLRSL 158 >gi|312794953|ref|YP_004027875.1| hypothetical protein RBRH_00889 [Burkholderia rhizoxinica HKI 454] gi|312166728|emb|CBW73731.1| Hypothetical protein RBRH_00889 [Burkholderia rhizoxinica HKI 454] Length = 268 Score = 64.9 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + PL LG+ V RL+ RLI +G ++ +DA E+AV Q+ GL G+ Sbjct: 1 MNPLRLGDHGYEVGRLQRRLIRAGYRPQ---VTHRYDAATEAAVTALQIHTGLVVDGIAG 57 Query: 159 SSTLEAMN 166 TL A+N Sbjct: 58 PQTLIALN 65 >gi|167770795|ref|ZP_02442848.1| hypothetical protein ANACOL_02146 [Anaerotruncus colihominis DSM 17241] gi|167666835|gb|EDS10965.1| hypothetical protein ANACOL_02146 [Anaerotruncus colihominis DSM 17241] Length = 286 Score = 64.9 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 20/143 (13%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ V+++++RL G + F + AV FQ ++GL G+ ++TL Sbjct: 95 KTGSRGNEVRQIQQRLKNWGYYTGE--VDGIFGVETKKAVMSFQRKNGLTVDGIAGNATL 152 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 +AM + + +L NI +A G+ V VG Sbjct: 153 KAMGIQSSQQTG----------GSGGYSSSDIALLANIISAEAR----GEP-FEGQVAVG 197 Query: 223 RV--DR-QTPILHSRINRIMFNP 242 V +R + P ++ +++ P Sbjct: 198 AVVLNRVEHPSFPDTLSGVVYQP 220 >gi|219668958|ref|YP_002459393.1| peptidoglycan-binding protein [Desulfitobacterium hafniense DCB-2] gi|219539218|gb|ACL20957.1| Peptidoglycan-binding domain 1 protein [Desulfitobacterium hafniense DCB-2] Length = 391 Score = 64.9 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ SV +L++ L G + F E+AV FQ GL P G+V Sbjct: 243 TLRQGSRGPSVVQLQQLLTARGFNPGAADG--IFGPRTEAAVIAFQRSSGLTPDGIVGIR 300 Query: 161 TLEAMNVP 168 T A+ V Sbjct: 301 TWTALGVT 308 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G + SV +L++ L G + + F E+AV FQ GL G+V Sbjct: 160 PCPTLRQGATGPSVVQLQQLLTSHGFSPGA--IDGIFGPRTEAAVIAFQGSRGLVQDGIV 217 Query: 158 DSSTLEAMNV 167 T A+ V Sbjct: 218 GVRTWTALGV 227 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ SV+ L+ L G + F + ++AV FQ GL G+V Sbjct: 322 TLRMGSRGASVKELQSLLKAQGFSPG--NIDGIFGSRTQAAVIAFQKSRGLVQDGIVGIR 379 Query: 161 TLEAMNV 167 T A+ V Sbjct: 380 TWTALGV 386 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G+ SV L++ L G + + F +AV FQ GL G+V Sbjct: 84 PCPVLRQGSQGPSVVHLQQLLTSHGFSPGA--IDGIFGPRTHAAVVAFQGSRGLVQDGVV 141 Query: 158 DSSTLEAMNV 167 T A+ V Sbjct: 142 GVKTWTALGV 151 >gi|89894526|ref|YP_518013.1| hypothetical protein DSY1780 [Desulfitobacterium hafniense Y51] gi|89333974|dbj|BAE83569.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 404 Score = 64.9 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ SV +L++ L G + F E+AV FQ GL P G+V Sbjct: 256 TLRQGSRGPSVVQLQQLLTARGFNPGAADG--IFGPRTEAAVIAFQRSSGLTPDGIVGIR 313 Query: 161 TLEAMNVP 168 T A+ V Sbjct: 314 TWTALGVT 321 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G + SV +L++ L G + + F E+AV FQ GL G+V Sbjct: 168 PCPTLRQGATGPSVVQLQQLLTSHGFSPGA--IDGIFGPRTEAAVIAFQGSRGLVQDGIV 225 Query: 158 DSSTLEAMNV 167 T A+ V Sbjct: 226 GVRTWTALGV 235 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ SV+ L+ L G + F + ++AV FQ GL G+V Sbjct: 335 TLRMGSRGASVKELQSLLKAQGFSPG--NIDGIFGSRTQAAVIAFQKSRGLVQDGIVGIR 392 Query: 161 TLEAMNV 167 T A+ V Sbjct: 393 TWTALGV 399 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G+ SV L++ L G + + F +AV FQ GL G+V Sbjct: 92 PCPVLRQGSQGPSVVHLQQLLTSHGFSPGA--IDGIFGPRTHAAVVAFQGSRGLVQDGVV 149 Query: 158 DSSTLEAMNV 167 T A+ V Sbjct: 150 GVKTWTALGV 159 >gi|331002315|ref|ZP_08325833.1| hypothetical protein HMPREF0491_00695 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410131|gb|EGG89565.1| hypothetical protein HMPREF0491_00695 [Lachnospiraceae oral taxon 107 str. F0167] Length = 539 Score = 64.9 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L LG+ + V+RL+ L +G L+ S F E+A+K FQ +GL G Sbjct: 317 ANGLRLGDQNEQVERLQSLLAKAGYLNDSNATG-YFGEITETALKRFQSNNGLSADGRAG 375 Query: 159 SSTLEAMN 166 + T +N Sbjct: 376 AQTFAKLN 383 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 8/99 (8%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 E+ L LG S VQ ++ RL G L S + D + AV++FQ ++ L G Sbjct: 243 EIKANTLSLGEHSEVVQAIQNRLSELGYLTTSPDGTYGNDTEL--AVRVFQSKNDLVVDG 300 Query: 156 MVDSSTLEAMNVPVDLRIRQLQV-----NLMRIKKLLEQ 189 + ST + + + + L++ + R++ LL + Sbjct: 301 YLGPSTRAVI-LSSEAKANGLRLGDQNEQVERLQSLLAK 338 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G + +++ERL+ G ++ + + F SAV +FQ ++GL G++ ST Sbjct: 104 LEEGVQHSYIAKVQERLMELGFMEHDEPTN-YFGNVTRSAVMIFQRQNGLAQDGIIGPST 162 Query: 162 L 162 L Sbjct: 163 L 163 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 LG+ V+R++ R+ G L + ++ +D + Q + L G V S T+ Sbjct: 177 KLGDVGEDVKRIQTRMYELGYLASADLITGTYDEKTQEGALKLQQINSLSEDGKVGSETM 236 Query: 163 EAM 165 + Sbjct: 237 NLL 239 >gi|325145008|gb|EGC67291.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria meningitidis M01-240013] Length = 358 Score = 64.9 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 73/233 (31%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + G N + + Sbjct: 107 ---------------------RGDGVKTI------------------AAGPDNPLGPVFV 127 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P +V + GCVR+++ L + + Sbjct: 128 RLGDPKLGLGIHGTNAP---ASVPGVRSHGCVRMKSPDAL--------------EFAKTI 170 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 + V +Y A +D+ + FR D YG +N+ + Sbjct: 171 ASGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDTASL 212 >gi|221214643|ref|ZP_03587613.1| putative peptidoglycan binding domain protein [Burkholderia multivorans CGD1] gi|221165533|gb|EED98009.1| putative peptidoglycan binding domain protein [Burkholderia multivorans CGD1] Length = 266 Score = 64.9 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L LG+ V L+ +LI +G + + AV FQ HGL G+ Sbjct: 3 KTLRLGDRGADVAYLQRQLIAAG---ARIDADALYGSATRGAVVAFQASHGLVADGIAGP 59 Query: 160 STLEAM 165 T A+ Sbjct: 60 KTWAAL 65 >gi|315651948|ref|ZP_07904950.1| endopeptidase [Eubacterium saburreum DSM 3986] gi|315485777|gb|EFU76157.1| endopeptidase [Eubacterium saburreum DSM 3986] Length = 533 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L LG+ + V RL+ L +G L+ + F ESA+K FQ +GL+ G Sbjct: 316 ANGLVLGDQNEQVSRLQALLAKAGYLNEANATG-YFGEITESALKRFQSNNGLEADGRAG 374 Query: 159 SSTLEAMNV 167 + T +N Sbjct: 375 AQTFAKLNT 383 Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 E+ L LG S VQ ++ RL G L S + D + AV+ FQ ++ L G Sbjct: 242 EIKANTLSLGEHSEVVQAIQNRLFQLGYLTSSPDGTYGNDTEL--AVRTFQSKNDLVVDG 299 Query: 156 MVDSSTLEAMNVPVDLRIRQLQV 178 + ST + + + + L + Sbjct: 300 YLGPSTRAVI-LSKEAKANGLVL 321 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + R++ RL+ G +D + + F ++AV +FQ ++GL G++ STL Sbjct: 106 GVQHSYIARVQSRLMELGFMD-NDEPTNYFGEVTKAAVMIFQRQNGLAQDGIIGPSTL 162 Score = 57.2 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 LG+ V+R++ RL G L + ++ +D + A Q + L G V S T+ Sbjct: 176 KLGDVGEDVKRIQNRLYELGYLASADMITGTYDERTQEAALKLQQINQLSEDGKVGSETM 235 Query: 163 EAM 165 + Sbjct: 236 NLL 238 >gi|218675980|ref|YP_002394799.1| hypothetical protein VS_II0198 [Vibrio splendidus LGP32] gi|218324248|emb|CAV25529.1| Conserved hypothetical protein [Vibrio splendidus LGP32] Length = 300 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 66/187 (35%), Gaps = 43/187 (22%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L + +++N+ L E K V +GRV R TP + ++I++ NP Sbjct: 81 RLILP-DTPRKGIVINLAELRLYFFEPEKNQVHVFPVGIGRVGRDTPEMITKISQKRPNP 139 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI +K+ + + P+ + Sbjct: 140 TWTPPNSI-RKEYLEKGIELPKVV----------------------------------PA 164 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 G N + + Y +H T + F +R +SGC+R+ D+ WL + Sbjct: 165 GPENPLGEYALRLAYGAGDYLIHGTNKD--FGIGLR-VSSGCIRME-PKDI-EWLFEQVS 219 Query: 362 TWSRYHI 368 + I Sbjct: 220 RGEQVTI 226 >gi|209524094|ref|ZP_03272645.1| 40-residue YVTN family beta-propeller repeat protein [Arthrospira maxima CS-328] gi|209495469|gb|EDZ95773.1| 40-residue YVTN family beta-propeller repeat protein [Arthrospira maxima CS-328] Length = 510 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 6/107 (5%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRP--LHLGNSSVSVQRLRERLIISGDLDP 126 +++ T+A E I I++R P P L G+ V L+ RL G + Sbjct: 11 LLTGVTVASAESPINRETQIVARAT-PTQNQTPRVLRRGSRGQEVAELQIRLRELGYFNN 69 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN-VPVDLR 172 + F + AV+ FQ GL P G+V T +A+ +P + Sbjct: 70 PNLGN--FGPITQQAVRQFQSDRGLRPDGIVGQETRQALALIPPSPK 114 >gi|86144591|ref|ZP_01062923.1| uncharacterized protein conserved in bacteria [Vibrio sp. MED222] gi|85837490|gb|EAQ55602.1| uncharacterized protein conserved in bacteria [Vibrio sp. MED222] Length = 296 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 66/187 (35%), Gaps = 43/187 (22%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L + +++N+ L E K V +GRV R TP + ++I++ NP Sbjct: 77 RLILP-DTPRKGIVINLAELRLYFFEPEKNQVHVFPVGIGRVGRDTPEMITKISQKRPNP 135 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI +K+ + + P+ + Sbjct: 136 TWTPPNSI-RKEYLEKGIELPKVV----------------------------------PA 160 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 G N + + Y +H T + F +R +SGC+R+ D+ WL + Sbjct: 161 GPENPLGEYALRLAYGAGDYLIHGTNKD--FGIGLR-VSSGCIRME-PKDI-EWLFEQVS 215 Query: 362 TWSRYHI 368 + I Sbjct: 216 RGEQVTI 222 >gi|294627225|ref|ZP_06705812.1| lytic enzyme [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294667703|ref|ZP_06732915.1| lytic enzyme [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598464|gb|EFF42614.1| lytic enzyme [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292602543|gb|EFF45982.1| lytic enzyme [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 244 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+ S V +L++ L G D F AV FQ +HGL G+V Sbjct: 111 LRHGDDSQDVGKLQQDLNRLGVRDAQGNRLAEDGRFGDNTREAVTAFQKQHGLQQDGVVG 170 Query: 159 SSTLEAMN-VPVDLRIRQLQV 178 T A++ PV +R Q+ Sbjct: 171 RDTRAALSAQPVQIREAQVAA 191 >gi|161521380|ref|YP_001584807.1| peptidoglycan binding domain-containing protein [Burkholderia multivorans ATCC 17616] gi|189352453|ref|YP_001948080.1| putative bacteriophage-encoded peptidoglycan-binding protein [Burkholderia multivorans ATCC 17616] gi|327198031|ref|YP_004306400.1| gp33 [Burkholderia phage KS5] gi|160345430|gb|ABX18515.1| Peptidoglycan-binding domain 1 protein [Burkholderia multivorans ATCC 17616] gi|189336475|dbj|BAG45544.1| putative bacteriophage-encoded peptidoglycan-binding protein [Burkholderia multivorans ATCC 17616] gi|310657165|gb|ADP02280.1| gp33 [Burkholderia phage KS5] Length = 266 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + LHLG+ V L+ +L+ +G + + AV FQ HGL G+ Sbjct: 3 KTLHLGDRGADVAYLQRQLVAAG---ARIDADAIYGSATRGAVVAFQASHGLVADGIAGP 59 Query: 160 STLEAM 165 T A+ Sbjct: 60 KTWAAL 65 >gi|238926949|ref|ZP_04658709.1| NLP/P60 protein [Selenomonas flueggei ATCC 43531] gi|238885183|gb|EEQ48821.1| NLP/P60 protein [Selenomonas flueggei ATCC 43531] Length = 226 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 +G+ V ++ +L G + G F AVK FQ HGLD G+V Sbjct: 28 SAESFQIGDQGTDVAEIQGQLSNYGYDVAADGD---FGPATAEAVKEFQAAHGLDADGLV 84 Query: 158 DSSTLEAM 165 +T EA+ Sbjct: 85 GPATYEAL 92 >gi|167630552|ref|YP_001681051.1| erfk/ybis/ycfs/ynhg [Heliobacterium modesticaldum Ice1] gi|167593292|gb|ABZ85040.1| erfk/ybis/ycfs/ynhg [Heliobacterium modesticaldum Ice1] Length = 307 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 21/161 (13%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 P V L+ERL G L +D AV Q + GL G V SS Sbjct: 30 PAAPPLKGSDVAELQERLKELGYYSG--PLDGLYDRKTVDAVTQMQRQKGLKADGCVSSS 87 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T + + + Q +K +G+ ++V + +L + +G V V Sbjct: 88 T--WLALSPPVMTNQPA----EPRKPPSAPVGVITLVVELDKNTLSVLIDGNVYKTYPVA 141 Query: 221 VGRVDRQTPILHSRINRIMFNPYW-----------VIPRSI 250 G+ D +P+ + +W +P I Sbjct: 142 TGKRDTPSPV--GEWRIVDKQKHWGDGFGSRWLGFNVPWGI 180 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 +L +G + V R++ RL G F A +E AV+ FQ + + +G Sbjct: 230 KLSKSAYKIGMTGQEVARIQFRLQEKGFSPGLADG--RFGAEMEKAVRNFQKQQQISETG 287 Query: 156 MVDSSTLEAMNVPVDLR 172 ++D +TL ++ V+ + Sbjct: 288 VIDEATLRLLDFQVEKK 304 >gi|209524911|ref|ZP_03273456.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] gi|209494560|gb|EDZ94870.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] Length = 225 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+S V L+ +L G + F AVK FQ +GL G+ Sbjct: 160 KSLSHGDSCSRVTNLQHKLAYYGYFHARA--TGYFGPITTKAVKAFQRDYGLRVDGVAGP 217 Query: 160 STLEAMNV 167 +TL A+ + Sbjct: 218 ATLAALGM 225 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 ++ G+S V +L+ L G + F + + +VK FQ +GL G+V + Sbjct: 63 SIYYGSSGNHVVQLQNALANHGYF--RARSTGYFGSITKHSVKAFQRDYGLVADGIVGPA 120 Query: 161 TLEAM 165 T A+ Sbjct: 121 TASAL 125 >gi|295394855|ref|ZP_06805068.1| N-acetylmuramoyl-L-alanine amidase [Brevibacterium mcbrellneri ATCC 49030] gi|294972188|gb|EFG48050.1| N-acetylmuramoyl-L-alanine amidase [Brevibacterium mcbrellneri ATCC 49030] Length = 378 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + + +H G+S V ++ +L G S FD ES ++ FQ G+ G+ Sbjct: 1 MTVSSIHPGDSDPLVATVKAQLHRLGY--QCDPSSDLFDHQFESVIREFQQSRGIVVDGV 58 Query: 157 VDSSTLEAM 165 + + T + + Sbjct: 59 IGAETFKEL 67 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 21/130 (16%) Query: 42 ESYHSIVNDRFD----NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ--DILSRGGWP 95 + + + +F+ F + +D +I ET + E IA Y+ D + R Sbjct: 30 DPSSDLFDHQFESVIREFQQSRGIVVDG---VIGAETFKELE--IARYKLGDRVLRFD-- 82 Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P+RPL V L+ RL G S ++ F + +AV+ Q GL P G Sbjct: 83 --PVRPLQ----GDDVTELQHRLSRLGVYTES--ITFEFGSATHNAVREIQNELGLSPDG 134 Query: 156 MVDSSTLEAM 165 +V STL A+ Sbjct: 135 VVGPSTLAAL 144 >gi|302556105|ref|ZP_07308447.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302473723|gb|EFL36816.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length = 83 Score = 64.5 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GM 156 L G + V L++RL+ D+ S ++D + +AV FQ+ +G+ G+ Sbjct: 6 AGTLREGATGPEVTELQQRLLRIPDVYRDGATSGSYDPTLTAAVARFQLWYGIRGDETGV 65 Query: 157 VDSSTLEAM 165 + T A+ Sbjct: 66 YGNDTRAAL 74 >gi|226362884|ref|YP_002780664.1| N-acetylmuramoyl-L-alanine amidase [Rhodococcus opacus B4] gi|226241371|dbj|BAH51719.1| putative N-acetylmuramoyl-L-alanine amidase [Rhodococcus opacus B4] Length = 399 Score = 64.1 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 14/78 (17%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK--------------GLSVAFDAYVESAVKLFQM 147 L G+ +V +R L G L FD +++SAV+ FQ Sbjct: 4 LRHGDHGPAVAEIRGTLAGLGFLHNGVPGTRRESINGSHWIAPDAVFDHHLDSAVRAFQQ 63 Query: 148 RHGLDPSGMVDSSTLEAM 165 + GL G+V +T +M Sbjct: 64 QRGLLVDGIVGPATYRSM 81 Score = 44.4 bits (104), Expect = 0.031, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 10/97 (10%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 I+ T ++A Y+ + +R +L PL G+ V L+ RL G Sbjct: 72 IVGPATYRSMKEA--SYR-LGARTLIYQLSA-PL-YGD---DVATLQTRLQDLGFYVG-- 121 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F +++ FQ G+ G+ +TL ++ Sbjct: 122 RVDGFFGPQTHNSLSSFQREIGIAADGICGPATLRSL 158 >gi|59801822|ref|YP_208534.1| hypothetical protein NGO1484 [Neisseria gonorrhoeae FA 1090] gi|194099286|ref|YP_002002380.1| hypothetical protein NGK_1755 [Neisseria gonorrhoeae NCCP11945] gi|239999553|ref|ZP_04719477.1| hypothetical protein Ngon3_08731 [Neisseria gonorrhoeae 35/02] gi|240014729|ref|ZP_04721642.1| hypothetical protein NgonD_08818 [Neisseria gonorrhoeae DGI18] gi|240017177|ref|ZP_04723717.1| hypothetical protein NgonFA_08426 [Neisseria gonorrhoeae FA6140] gi|240081184|ref|ZP_04725727.1| hypothetical protein NgonF_07718 [Neisseria gonorrhoeae FA19] gi|240113397|ref|ZP_04727887.1| hypothetical protein NgonM_07477 [Neisseria gonorrhoeae MS11] gi|240116255|ref|ZP_04730317.1| hypothetical protein NgonPID1_08470 [Neisseria gonorrhoeae PID18] gi|240121252|ref|ZP_04734214.1| hypothetical protein NgonPI_05693 [Neisseria gonorrhoeae PID24-1] gi|240124087|ref|ZP_04737043.1| hypothetical protein NgonP_09138 [Neisseria gonorrhoeae PID332] gi|240126296|ref|ZP_04739182.1| hypothetical protein NgonSK_08827 [Neisseria gonorrhoeae SK-92-679] gi|240128752|ref|ZP_04741413.1| hypothetical protein NgonS_09032 [Neisseria gonorrhoeae SK-93-1035] gi|254494270|ref|ZP_05107441.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|260439930|ref|ZP_05793746.1| hypothetical protein NgonDG_02373 [Neisseria gonorrhoeae DGI2] gi|268595365|ref|ZP_06129532.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268597296|ref|ZP_06131463.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268599470|ref|ZP_06133637.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268601920|ref|ZP_06136087.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268682710|ref|ZP_06149572.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684880|ref|ZP_06151742.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268687137|ref|ZP_06153999.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291043209|ref|ZP_06568932.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293398537|ref|ZP_06642715.1| hypothetical protein NGNG_01196 [Neisseria gonorrhoeae F62] gi|59718717|gb|AAW90122.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193934576|gb|ACF30400.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|226513310|gb|EEH62655.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548754|gb|EEZ44172.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268551084|gb|EEZ46103.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268583601|gb|EEZ48277.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268586051|gb|EEZ50727.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268622994|gb|EEZ55394.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268625164|gb|EEZ57564.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268627421|gb|EEZ59821.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291012815|gb|EFE04798.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291611008|gb|EFF40105.1| hypothetical protein NGNG_01196 [Neisseria gonorrhoeae F62] gi|317164801|gb|ADV08342.1| hypothetical protein NGTW08_1380 [Neisseria gonorrhoeae TCDC-NG08107] Length = 358 Score = 64.1 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 73/233 (31%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWHIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + G N + + Sbjct: 107 ---------------------RGDGVKTI------------------AAGPDNPLGPVFV 127 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P +V + GCVR+++ L + + Sbjct: 128 RLGDPKLGLGIHGTNAP---ASVPGIRSHGCVRMKSPDAL--------------EFAKTI 170 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 T V +Y A +D+ + FR D YG +N+ + Sbjct: 171 ATGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDTASL 212 >gi|240118541|ref|ZP_04732603.1| hypothetical protein NgonPID_08787 [Neisseria gonorrhoeae PID1] gi|268604251|ref|ZP_06138418.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268588382|gb|EEZ53058.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] Length = 358 Score = 64.1 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 73/233 (31%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWHIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + G N + + Sbjct: 107 ---------------------RGDGVKTI------------------AAGPDNPLGPVFV 127 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P +V + GCVR+++ L + + Sbjct: 128 RLGDPKLGLGIHGTNAP---ASVPGIRSHGCVRMKSPDAL--------------EFAKTI 170 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 T V +Y A +D+ + FR D YG +N+ + Sbjct: 171 ATGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDTASL 212 >gi|256381064|ref|YP_003104724.1| cell wall hydrolase/autolysin [Actinosynnema mirum DSM 43827] gi|255925367|gb|ACU40878.1| cell wall hydrolase/autolysin [Actinosynnema mirum DSM 43827] Length = 379 Score = 64.1 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V +R L G L S FD VE AV+ FQ + GL G+V +T Sbjct: 4 LRRGDVGQDVAEVRATLTKLGLLT-DPHASRVFDLSVEHAVRTFQQQRGLITDGLVGPAT 62 Query: 162 LEAM 165 A+ Sbjct: 63 YRAL 66 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 25/129 (19%) Query: 83 AFYQDILSRGGWPELPIRPLHLGNS-----------SVSVQRLRERLIISGDLDPSKGLS 131 A Y+ + LG+ V L+ERL+ G + + Sbjct: 61 ATYRALRDAN---------YRLGDRPLAFLIAQPVTGDDVLTLQERLLELGY--DAGRAN 109 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQ--LQVNLMRIKKLLE 188 F E A++ FQ +GL GM T+ A+ + +R + R+++ Sbjct: 110 GEFGQQTEQALRSFQSDYGLVVDGMCGPDTVRALRQLQPKVRGGRPVFLREQERVRRAGP 169 Query: 189 QKMGLRYVL 197 + G R ++ Sbjct: 170 RLSGKRIII 178 >gi|15616227|ref|NP_244532.1| N-acetylmuramoyl-L-alanine amidase (major autolysin) [Bacillus halodurans C-125] gi|10176289|dbj|BAB07384.1| N-acetylmuramoyl-L-alanine amidase (major autolysin) [Bacillus halodurans C-125] Length = 588 Score = 64.1 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V +L++ L +G S + F + ES VK FQ HGL +G+V S+ Sbjct: 179 TLRFGDRHPYVIQLKKDLAEAGF-PVSGSPTEYFGSVTESQVKAFQRAHGLTANGVVGSA 237 Query: 161 TLEAM 165 T + Sbjct: 238 TYAKL 242 Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V +L++ L G S + F + ES VK FQ +GL G+V S+ Sbjct: 330 TLRFGDRHPYVIQLKKDLAEVGF-PVSGSPTEYFGSVTESQVKAFQRAYGLTADGIVGSA 388 Query: 161 TLEAM 165 T + Sbjct: 389 TYSKL 393 Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L G+ V +L++ L +G S + F + ES VK FQ HGL +G Sbjct: 99 TVRPATLRFGDRHPYVIQLKKDLAEAGF-PVSGSPTEYFGSVTESQVKAFQRAHGLTANG 157 Query: 156 MVDSSTLEAM 165 +V+S+T + Sbjct: 158 VVESATYAKL 167 Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V +L++ L +G S + F + ES VK FQ +GL G+V S+ Sbjct: 254 TLRFGDRHPYVIQLKKDLAEAGF-PVSGSPTEYFGSVTESQVKAFQRTYGLTVDGIVGSA 312 Query: 161 TLEAM 165 T + Sbjct: 313 TYSKL 317 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L LG +V +L+ L +G S + F E VK FQ +GL G+ Sbjct: 27 AQVLKLGTYDTAVIQLKIDLEKAGF-KVSDNPTTYFGPTTEQKVKEFQQAYGLTVDGIAG 85 Query: 159 SSTLEAM 165 +TL + Sbjct: 86 PATLSKL 92 >gi|253701884|ref|YP_003023073.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. M21] gi|251776734|gb|ACT19315.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. M21] Length = 307 Score = 64.1 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 52/166 (31%), Gaps = 49/166 (29%) Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKV--GLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ ++VN+P L GK + +G +TP+ + + M NP Sbjct: 100 WIVPHVKNDPDIVVNLPEYRLYLFSQGKPGGVFTFPLGIGDEGAETPLGSYTVIQKMTNP 159 Query: 243 YWVIPRSIIQKDM--MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 W +P SI + ++ + + Sbjct: 160 SWHVPDSI-RHEVPELPQIV---------------------------------------- 178 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 PG N + + + SR N +H T P + GC+R+ Sbjct: 179 PPGPSNPLGTHALRL-SRGNILIHGTNRPWGIGRRS---SHGCLRL 220 >gi|108758605|ref|YP_628829.1| penicillin-resistant DD-carboxypeptidase [Myxococcus xanthus DK 1622] gi|5701723|dbj|BAA83081.1| penicillin-resistant DD-carboxypeptidase [Myxococcus xanthus] gi|108462485|gb|ABF87670.1| penicillin-resistant DD-carboxypeptidase [Myxococcus xanthus DK 1622] Length = 302 Score = 64.1 bits (155), Expect = 4e-08, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G +V +L+ +L +G + F +SAV+ FQ GL G+V Sbjct: 22 TLRSGARGAAVTQLQNKLRAAGFNPGASDG--VFGPKTQSAVQAFQRARGLQVDGIVGPK 79 Query: 161 TLEAMN 166 T A+N Sbjct: 80 TWSALN 85 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G V+ L++RL + G S F +SAVK FQ GL G+V Sbjct: 96 TLRNGARGEPVRALQQRLNVLGF--KSGTADGVFGPKTQSAVKAFQQSRGLVADGIVGPK 153 Query: 161 TLEAMNVPVD 170 T + + + V Sbjct: 154 TWDKLGINVQ 163 >gi|312142018|ref|YP_004009354.1| n-acetylmuramoyl-l-alanine amidase cwlm [Rhodococcus equi 103S] gi|325677534|ref|ZP_08157198.1| N-acetylmuramoyl-L-alanine amidase [Rhodococcus equi ATCC 33707] gi|311891357|emb|CBH50678.1| N-acetylmuramoyl-L-alanine amidase cwlM [Rhodococcus equi 103S] gi|325551781|gb|EGD21479.1| N-acetylmuramoyl-L-alanine amidase [Rhodococcus equi ATCC 33707] Length = 400 Score = 64.1 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 14/78 (17%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA--------------FDAYVESAVKLFQM 147 L G+ +V +R L G L + FD +++SAV+ FQ Sbjct: 4 LRHGDHGPAVAEIRGTLTGLGFLHNGVAETQRESVNGSHWVSPDAMFDHHLDSAVRAFQQ 63 Query: 148 RHGLDPSGMVDSSTLEAM 165 + GL G+V +T ++ Sbjct: 64 QRGLLVDGIVGPATYRSL 81 Score = 49.8 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 10/97 (10%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 I+ T ++A Y+ + +R +L PL G+ V L+ RL G Sbjct: 72 IVGPATYRSLKEA--SYR-LGARTLIYQLSA-PL-YGD---DVAALQTRLQDLGFYVG-- 121 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F A+ FQ G+ G+ +TL ++ Sbjct: 122 RVDGYFGPKTHEALSSFQREIGIAADGICGPATLRSL 158 >gi|209525841|ref|ZP_03274377.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] gi|209493814|gb|EDZ94133.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] Length = 472 Score = 64.1 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ V +++ RL G L S + F ++AV FQ + L G+V +T Sbjct: 54 LAIGDFGPEVTQIQNRLRALGYL--SANATGYFGEETQNAVIRFQRDNRLVQDGIVGPNT 111 Query: 162 LEAM 165 + A+ Sbjct: 112 VVAL 115 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V ++ L G ++ +D AV+ FQM +GL P+G + + Sbjct: 213 SLGPGSFGPIVGLVQRELQRLGFFPGQ--ITNFYDEVTFQAVRNFQMVNGLTPTGFIGPT 270 Query: 161 TLEAM 165 T + Sbjct: 271 TQSLL 275 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L LG+ V L++RL G + F AV FQ + + +G V Sbjct: 300 PSSILLLGSRGADVIALQQRLQQLGYYTGM--IDGVFGESTRVAVLRFQRDNAITQTGQV 357 Query: 158 DSSTLEAMNVPVDLR 172 +T + R Sbjct: 358 GPTTQFHLARATIQR 372 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+S V L+ RL G + + F AV FQ + + +G+V T Sbjct: 140 LGLGDSGPGVTSLQNRLRNLGFFN--NNSTGYFGPITRDAVIRFQQANLIAATGLVTEDT 197 Query: 162 LEAMNV 167 L +N Sbjct: 198 LAILNR 203 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GN+ +V+R++ RL G + ++ FD ++AV FQ + + +G+V +T Sbjct: 400 GNAGENVRRIQRRLRELGFYNG--PINGFFDGQTQNAVIQFQQAYNITTTGIVGPTTETY 457 Query: 165 M-NVP 168 + NV Sbjct: 458 LFNVT 462 >gi|332982674|ref|YP_004464115.1| cell wall hydrolase SleB [Mahella australiensis 50-1 BON] gi|332700352|gb|AEE97293.1| cell wall hydrolase SleB [Mahella australiensis 50-1 BON] Length = 238 Score = 64.1 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 2/75 (2%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GG+ L +G+S V +L+ L G ++ + + AV FQ G Sbjct: 30 SGGYTHAASTILKVGSSGSQVSQLQTALKQQGYF--YANVTGYYGSLTRDAVIRFQKDRG 87 Query: 151 LDPSGMVDSSTLEAM 165 L G+ TL A+ Sbjct: 88 LAADGIAGPQTLNAL 102 >gi|313885142|ref|ZP_07818894.1| peptidase, S41 family [Eremococcus coleocola ACS-139-V-Col8] gi|312619833|gb|EFR31270.1| peptidase, S41 family [Eremococcus coleocola ACS-139-V-Col8] Length = 486 Score = 64.1 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 3/73 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG S SV L L G S FD E AVK FQ H LD G+V T Sbjct: 400 LSLGQHSDSVANLNVILNGMGY---SANQKDEFDQDTEKAVKAFQKDHDLDQDGIVTGDT 456 Query: 162 LEAMNVPVDLRIR 174 A+N+ ++ Sbjct: 457 SAAINLAAQEYLQ 469 >gi|317130716|ref|YP_004096998.1| NLP/P60 protein [Bacillus cellulosilyticus DSM 2522] gi|315475664|gb|ADU32267.1| NLP/P60 protein [Bacillus cellulosilyticus DSM 2522] Length = 542 Score = 64.1 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ V+ ++ L +G + ++ + + V+ FQ GL G+ T Sbjct: 139 LRVGSRGKDVEAVQTILKKTGFFNH-DAITGYYGTITQEGVRNFQRARGLKVDGIAGPQT 197 Query: 162 LEAMN 166 + A+N Sbjct: 198 IAALN 202 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G S V L+E+L G + + F AV+ FQ + L G+V Sbjct: 35 KTLSFGVKSNDVVVLQEQLKEKGYFN-YPTATGYFGEVTRKAVQDFQRANNLKADGIVGP 93 Query: 160 STLEAM 165 T A+ Sbjct: 94 RTFAAL 99 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V+ L+ L G ++ F +AV+ FQ + L G+ T Sbjct: 253 LREGSQGEQVRTLQTALKELGYF--QGDVTTIFGPITRNAVRSFQQANSLKVDGVAGPQT 310 Query: 162 LEAM 165 +A+ Sbjct: 311 FQAL 314 Score = 49.1 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 7/102 (6%) Query: 69 IISKETIAQTEKAIAFYQDILS-----RGGWPELPIRPLHLGNSSVSVQRLRERLIISGD 123 + +T E+A+ + S L +G S V V L+ RL + G Sbjct: 305 VAGPQTFQALERALTEKNNPSSTTPTSNNNANADATTLLRVGQSGVGVTELQARLKVLGY 364 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F ++A+ FQ GL G+V ST + + Sbjct: 365 FKQEP--TGFFGDITKNALTQFQKDWGLVSDGLVTQSTWDKL 404 >gi|239629092|ref|ZP_04672123.1| peptidoglycan-binding domain 1 protein [Clostridiales bacterium 1_7_47_FAA] gi|239519238|gb|EEQ59104.1| peptidoglycan-binding domain 1 protein [Clostridiales bacterium 1_7_47FAA] Length = 559 Score = 63.7 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G V++L++RL+ G +D + + F + AVK FQ ++ L G+V ++T Sbjct: 103 LRIGVRHEIVKKLQQRLMDLGFMD-NDEPTDYFGEMTQMAVKHFQRQNELPMDGIVGNAT 161 Query: 162 LEAM 165 +A+ Sbjct: 162 WDAI 165 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V ++RL G L + A+ AVK FQ R+ G + ST Sbjct: 248 LAYGEKSDVVLECQKRLKDLGYLTTTPDG--AYGEDTVVAVKQFQARNDQVVDGYLGPST 305 Query: 162 LEAMNVPVDLRIRQLQV 178 A+N D R L + Sbjct: 306 RIALN-SPDARANGLML 321 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 5/83 (6%) Query: 88 ILSRGGWPELPIRPLHL-----GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 I+ W + G +QR+++RL G L + ++ F E+AV Sbjct: 156 IVGNATWDAIMAEDAKYYAVSKGTQGDDIQRIQQRLYELGYLASADLVTGNFGDSTEAAV 215 Query: 143 KLFQMRHGLDPSGMVDSSTLEAM 165 Q +GLD G V T+ + Sbjct: 216 LKLQEVNGLDQDGKVGQRTINLL 238 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+ L LG S +V ++++ L G L ++ F E A+K FQ R+GL Sbjct: 312 PDARANGLMLGESGDAVIKVQKLLNKHGYLVSGN-VTGYFGEATERAIKNFQSRNGLTSD 370 Query: 155 GMVDSSTLEAM 165 G+V T+ + Sbjct: 371 GLVGVQTMAKL 381 >gi|251798289|ref|YP_003013020.1| cell wall hydrolase SleB [Paenibacillus sp. JDR-2] gi|247545915|gb|ACT02934.1| cell wall hydrolase SleB [Paenibacillus sp. JDR-2] Length = 212 Score = 63.7 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 33/161 (20%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L +G+ V+ L+ERL + ++ F A +SAV FQ GL P G+ Sbjct: 25 SAASLKVGSKGTEVKDLQERLYMLDYYKG--NITSYFSASTKSAVAAFQKGAGLKPDGVA 82 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 S TL A++ R ++ + + + G Y GK+ + + Sbjct: 83 GSITLHALHKVTVDRSDLSRMA----RVVNAEAGGESY--------------KGKIAVAA 124 Query: 218 TVIVGRVDRQTPILHSRINRIMFNPY----------WVIPR 248 VI+ R +T S I ++F P W +P Sbjct: 125 -VILNRA--KTNGFPSTIRGVIFAPSAFSVVSNGQFWKMPT 162 >gi|310642862|ref|YP_003947620.1| cell wall hydrolase, sleb [Paenibacillus polymyxa SC2] gi|309247812|gb|ADO57379.1| cell wall hydrolase, SleB [Paenibacillus polymyxa SC2] Length = 217 Score = 63.7 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 51/152 (33%), Gaps = 22/152 (14%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 G + L G S V L+++L G G + + + AV FQ HG Sbjct: 22 APGQAQAQSSALKKGIQSERVLELQQQLHSLGYFK--AGFTGYYGSLTSKAVARFQRDHG 79 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L P G+ ++T ++ +R+ L + + + G + + Sbjct: 80 LAPDGIAGAATQAKLDSFGKVRVTALD---QLARIIYSEARGESF------EGQVAV--- 127 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 G V L V G S I ++ P Sbjct: 128 GAVVLN-RVQSG-------EFPSSIPDVILQP 151 >gi|289646814|ref|ZP_06478157.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. aesculi str. 2250] Length = 321 Score = 63.7 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 45/176 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ + G+ V + VGR +PI +++ NP Sbjct: 89 RFILPPGPREG-IVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ + Sbjct: 148 TWTPPASIKAE-----------------------------------HAADGDPLPDVVPA 172 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 G N + K + Y +H + + F +R + GC R+ N+++L Sbjct: 173 GPDNPLGPFKFGL--GLSGYLIHGSNKK--FGIGMRA-SHGCFRMYNNNVLELADM 223 >gi|544113|sp|P36550|CWLL_BACLI RecName: Full=N-acetylmuramoyl-L-alanine amidase CwlL; AltName: Full=Autolysin; AltName: Full=Cell wall hydrolase; Flags: Precursor gi|436573|dbj|BAA02647.1| CwlL protein [Bacillus licheniformis] gi|742336|prf||2009368D cell wall protein Length = 360 Score = 63.7 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V+ L++RLI +G P G +++ AVK Q + G+ G+ +T Sbjct: 196 LKKGASGSQVKALQKRLIAAGFSLPKYGADGSYENETVQAVKALQKKAGIAVDGIYGPAT 255 Query: 162 LEAM 165 +A+ Sbjct: 256 EKAL 259 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%) Query: 104 LGNSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 V++++E L + G+ + +AVK FQ+ HGL G+ S Sbjct: 290 PLMKGTGVRQIQEALAALYFYPDKGAKNNGIDGYYGPKTANAVKRFQLMHGLSADGIYGS 349 Query: 160 STLEAM 165 T + Sbjct: 350 DTKAKL 355 >gi|313667851|ref|YP_004048135.1| hypothetical protein NLA_5060 [Neisseria lactamica ST-640] gi|313005313|emb|CBN86746.1| hypothetical protein NLA_5060 [Neisseria lactamica 020-06] Length = 340 Score = 63.7 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 73/233 (31%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWHIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + G N + + Sbjct: 107 ---------------------RGDGVKTI------------------AAGPDNPLGPVFV 127 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P +V + GCVR+++ L + + Sbjct: 128 RLGDPKLGLGIHGTNAP---ASVPGVRSHGCVRMKSPDAL--------------EFAKTI 170 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 + V +Y A +D+ + FR D YG +N+ + Sbjct: 171 ASGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDTASL 212 >gi|121534486|ref|ZP_01666309.1| NLP/P60 protein [Thermosinus carboxydivorans Nor1] gi|121306979|gb|EAX47898.1| NLP/P60 protein [Thermosinus carboxydivorans Nor1] Length = 219 Score = 63.7 bits (154), Expect = 5e-08, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 9/90 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 G+ + ++ RL G G F +SAV FQ GL+ G+V Sbjct: 24 SGVYEEGDQGPEIAAIQARLRELGYRLEVDGD---FGQATKSAVIAFQKDRGLEADGVVG 80 Query: 159 SSTLEAM---NVPVDLR---IRQLQVNLMR 182 + T A+ ++PV R++ MR Sbjct: 81 AQTYRALMGRDMPVSRDSSAARRVIQTAMR 110 >gi|307944091|ref|ZP_07659432.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] gi|307772437|gb|EFO31657.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] Length = 401 Score = 63.7 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 8/89 (8%) Query: 75 IAQTEKAIAFYQDILSRGGWPEL--PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 A + YQ I +GG + R L LG+ V+ L+ERLI G + G Sbjct: 192 YAALMQ--TAYQRIA-KGGASKFNERGRMLRLGSDGYRVKALQERLITLGYHLQADGD-- 246 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSST 161 F V FQ+ HGL P G+V T Sbjct: 247 -FGPATRRQVVAFQVDHGLKPDGIVGPLT 274 >gi|256824326|ref|YP_003148286.1| cell wall-associated hydrolase, invasion-associated protein [Kytococcus sedentarius DSM 20547] gi|256687719|gb|ACV05521.1| cell wall-associated hydrolase, invasion-associated protein [Kytococcus sedentarius DSM 20547] Length = 422 Score = 63.7 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 +P+ LG + V+ + RL I L AVK FQ HGL G+V Sbjct: 198 SGQPIKLGWTGTRVKLVLRRLGI-----DQGQLLHRMTPAAVDAVKRFQRAHGLTADGVV 252 Query: 158 DSSTLEAM 165 T AM Sbjct: 253 GPRTWAAM 260 Score = 59.8 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 30/65 (46%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL G+ VQRL+ L G++ P L + A AV+ FQ R GL G+ + Sbjct: 40 PLRPGHRGGYVQRLQWALNKVGNVTPKVALDGVYGAITTRAVRAFQTRQGLLVDGIAGTG 99 Query: 161 TLEAM 165 T + Sbjct: 100 TKRRL 104 >gi|294632792|ref|ZP_06711351.1| zinc D-Ala-D-Ala carboxypeptidase [Streptomyces sp. e14] gi|292830573|gb|EFF88923.1| zinc D-Ala-D-Ala carboxypeptidase [Streptomyces sp. e14] Length = 248 Score = 63.7 bits (154), Expect = 6e-08, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVK 143 D GW R L G S V L+ R+ PS G+ +F +AV+ Sbjct: 32 DTARAYGW----SRTLSQGASGADVTELQIRVAGWAADSPSHSIVGVDGSFGPATAAAVR 87 Query: 144 LFQMRHGLDPSGMVDSSTLEAMN 166 FQ +GL G+ +T +N Sbjct: 88 RFQAAYGLGVDGVAGPATQAQLN 110 >gi|77460233|ref|YP_349740.1| ErfK/YbiS/YcfS/YnhG [Pseudomonas fluorescens Pf0-1] gi|77384236|gb|ABA75749.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 323 Score = 63.3 bits (153), Expect = 6e-08, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 45/177 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ L G+ V + +GR +PI H+ I NP Sbjct: 89 RFILPPGPREG-IVINLAEYRLYYYPKGRNVVYTFPLGIGREGWGSPIAHTTITAKTPNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ + Sbjct: 148 TWTPPASIKAE-----------------------------------HAADGDPLPNVVPA 172 Query: 303 GKINAMASTKIEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 G N + K + H + + F +R + GC R+ N++++ + Sbjct: 173 GPDNPLGPFKFTLGTPGYLI--HGSNKK--FGIGMRT-SHGCFRMFNNNVLEMASMV 224 >gi|269965347|ref|ZP_06179467.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269829993|gb|EEZ84222.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 308 Score = 63.3 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 40/161 (24%) Query: 189 QKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + +++N+ L G+ + V +GR+ R TP++ +RI++ NP W P Sbjct: 97 PDVPYKGIVINLAELRLYYFPKGEDIVHVFPVGIGRIGRDTPVMTTRISQKRPNPTWTPP 156 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI + + A P + G N Sbjct: 157 ASI-RAEYKAKGIDLPAVV----------------------------------PAGPDNP 181 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR 347 + + N Y +H T + F +R ++GC+R+ Sbjct: 182 LGMFALRLAYGNGEYLIHGTNKD--FGIGMR-VSAGCIRMD 219 >gi|91223276|ref|ZP_01258542.1| hypothetical protein V12G01_05516 [Vibrio alginolyticus 12G01] gi|91192089|gb|EAS78352.1| hypothetical protein V12G01_05516 [Vibrio alginolyticus 12G01] Length = 308 Score = 63.3 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 40/161 (24%) Query: 189 QKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + +++N+ L G+ + V +GR+ R TP++ +RI++ NP W P Sbjct: 97 PDVPYKGIVINLAELRLYYFPKGENIVHVFPVGIGRIGRDTPVMTTRISQKRPNPTWTPP 156 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI + + A P + G N Sbjct: 157 ASI-RAEYKAKGIDLPAVV----------------------------------PAGPDNP 181 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR 347 + + N Y +H T + F +R ++GC+R+ Sbjct: 182 LGMFALRLAYGNGEYLIHGTNKD--FGIGMR-VSAGCIRMD 219 >gi|150389177|ref|YP_001319226.1| spore cortex-lytic enzyme SleB [Alkaliphilus metalliredigens QYMF] gi|149949039|gb|ABR47567.1| Spore cortex-lytic enzyme SleB [Alkaliphilus metalliredigens QYMF] Length = 227 Score = 63.3 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + L G+S V L+ERL D +S + AV+LFQ +GL G Sbjct: 25 SIYAQNLSWGSSGGEVTDLQERLTRWDYYDG--PISGTYGPQTHEAVRLFQRINGLTVDG 82 Query: 156 MVDSSTLEAMNV 167 +V T A+ + Sbjct: 83 IVGPQTRGALGM 94 >gi|188991086|ref|YP_001903096.1| hypothetical protein xccb100_1690 [Xanthomonas campestris pv. campestris str. B100] gi|167732846|emb|CAP51040.1| hypothetical protein with peptidoglycan-binding domain [Xanthomonas campestris pv. campestris] Length = 441 Score = 63.3 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 3/74 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGL 151 P L G V++L+ +L G + F A + AV+ FQ HGL Sbjct: 218 PSADDGKLEQGERGEQVKQLQGQLAQLGAIGRDGKPLHPDGDFGANTKHAVEQFQREHGL 277 Query: 152 DPSGMVDSSTLEAM 165 G+V T A+ Sbjct: 278 QVDGVVGRQTQAAL 291 >gi|21244359|ref|NP_643941.1| hypothetical protein XAC3634 [Xanthomonas axonopodis pv. citri str. 306] gi|21110016|gb|AAM38477.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 306 Score = 63.3 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L V+ L++ L G D + A+ AVK FQ HGL G+V Sbjct: 109 LRENARGAEVRTLQQTLQQLGYKDAAGNELKADGAYGQRTSDAVKAFQRAHGLQDDGVVG 168 Query: 159 SSTLEAM 165 T A+ Sbjct: 169 RDTQAAL 175 >gi|312883050|ref|ZP_07742781.1| hypothetical protein VIBC2010_07174 [Vibrio caribbenthicus ATCC BAA-2122] gi|309369210|gb|EFP96731.1| hypothetical protein VIBC2010_07174 [Vibrio caribbenthicus ATCC BAA-2122] Length = 300 Score = 63.3 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 59/175 (33%), Gaps = 42/175 (24%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 V++N+ L + +G+ V +GR+ R TP++ + I++ P W P SI + Sbjct: 92 VVINLAELRLYYFDPDGQTVHIFPVGIGRIGRDTPVMQTSISQKRIKPTWTPPDSIRK-- 149 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 YL E G N + + + Sbjct: 150 ---------SYLA------------------------EGIKLPPVVPAGPDNPLGNHALR 176 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 Y +H T + F +R +SGC+R+ D+ WL R I Sbjct: 177 LAYGAGDYLIHGTNKD--FGVGLR-VSSGCIRME-PNDI-EWLFSQVQIGERVKI 226 >gi|222529549|ref|YP_002573431.1| spore cortex-lytic enzyme [Caldicellulosiruptor bescii DSM 6725] gi|222456396|gb|ACM60658.1| spore cortex-lytic enzyme [Caldicellulosiruptor bescii DSM 6725] Length = 225 Score = 63.3 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 4/91 (4%) Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 IA YQ + + + + + G++ V +++RL G D + Y+ A Sbjct: 20 IANYQHLKFKYALSPIILS--YYGSTGPEVIEIQKRLKQWGYYDGPIDGIYGYKTYM--A 75 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 V+ FQ ++GL G+ S TL A+ + R Sbjct: 76 VRYFQAKNGLKVDGIAGSETLRALGIVTTTR 106 >gi|92113690|ref|YP_573618.1| ErfK/YbiS/YcfS/YnhG [Chromohalobacter salexigens DSM 3043] gi|91796780|gb|ABE58919.1| ErfK/YbiS/YcfS/YnhG [Chromohalobacter salexigens DSM 3043] Length = 387 Score = 63.3 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 55/169 (32%), Gaps = 47/169 (27%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAV---ENGKVGL--RSTVIVGRVDRQTPILHSRINRI 238 + +L V+VNIP L + G+ + VGR+D TP+ +RI Sbjct: 129 RFILP-DTPYEGVVVNIPEMRLYYYPPRKEGEPQRVETYAISVGRMDWSTPLGETRITAK 187 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF 298 NP W P+SII++ ++ + Sbjct: 188 QENPPWYPPQSIIEE-----------------------------------HAADGRELPD 212 Query: 299 RQDPGKINAMASTKIEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRV 346 PG N + K+ H T P +R T GC+R+ Sbjct: 213 VVPPGPDNPLGKYKMRLGLPGYLI--HGTNRPQ--GVGMR-VTHGCIRM 256 >gi|78049307|ref|YP_365482.1| hypothetical protein XCV3751 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037737|emb|CAJ25482.1| conserved hypothetical protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 630 Score = 63.3 bits (153), Expect = 8e-08, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 3/69 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L V+ L++ L G D A+ AVK FQ HGL G+ Sbjct: 431 GVLRENARGAEVRTLQQTLQQLGYKDAGGNELKADGAYGQRTSEAVKAFQRAHGLQDDGV 490 Query: 157 VDSSTLEAM 165 V T A+ Sbjct: 491 VGRDTQAAL 499 >gi|134300529|ref|YP_001114025.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum reducens MI-1] gi|134053229|gb|ABO51200.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum reducens MI-1] Length = 315 Score = 63.3 bits (153), Expect = 8e-08, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 20/135 (14%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 P + V L+E L + + +D+ + A++ +Q H L G+VD Sbjct: 46 PANPPMQGKDVVDLQEELKALNYYNG--PTNGIYDSLTQRALRKYQQDHYLKNDGVVDWE 103 Query: 161 TLEAMNVPVDLRIRQLQVNLMR-----IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 T L +NL + K L G ++++ L + +GK Sbjct: 104 TW-----------HSLALNLEKPVTKSEKTLPP--TGDMAIIIDTTTRKLTVLSDGKPYT 150 Query: 216 RSTVIVGRVDRQTPI 230 + V G+ +P+ Sbjct: 151 QFNVACGKPSTPSPV 165 Score = 42.5 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ V ++ L G + + F +E+ +K F+ +GL VDS Sbjct: 250 KKLVRGDRGADVFEVQRTLKRLGYYEAQ--IDGIFGYSMEAGIKKFRKANGLPMDNFVDS 307 Query: 160 STLEAM 165 +A+ Sbjct: 308 KMYKAL 313 >gi|296315100|ref|ZP_06865041.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria polysaccharea ATCC 43768] gi|296838011|gb|EFH21949.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria polysaccharea ATCC 43768] Length = 326 Score = 63.3 bits (153), Expect = 8e-08, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 73/233 (31%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 33 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWHIPKSIQKE 92 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + G N + + Sbjct: 93 ---------------------RGDGVKTI------------------AAGPDNPLGPVFV 113 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P +V + GCVR+++ L + + Sbjct: 114 RLGDPKLGLGIHGTNAP---TSVPGVRSHGCVRMKSPDAL--------------EFAKTI 156 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 + V +Y A +D+ + FR D YG +N+ + Sbjct: 157 ASGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDTASL 198 >gi|167945516|ref|ZP_02532590.1| general secretion pathway protein A [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 99 Score = 63.3 bits (153), Expect = 8e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 104 LGNSSVSVQRLRERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ V LR RL +S + + G+S FD + ++ +Q+R GL P G+ T Sbjct: 16 PGSDGPLVTWLRRRLALSNGIKLSADGVSQQFDEELGVQLREYQLRTGLKPDGVAGQKTQ 75 Query: 163 EAMN 166 +N Sbjct: 76 IQLN 79 >gi|331016238|gb|EGH96294.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 333 Score = 63.3 bits (153), Expect = 8e-08, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 45/176 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ + G+ V + VGR +PI +++ NP Sbjct: 89 RFILPPGPREG-IVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ + Sbjct: 148 TWTPPASIKAE-----------------------------------HAADGDPLPNVVPA 172 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 G N + K + Y +H + + F +R + GC R+ N+++L Sbjct: 173 GPDNPLGPFKFGL--GLSGYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|325924744|ref|ZP_08186181.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas perforans 91-118] gi|325544836|gb|EGD16182.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas perforans 91-118] Length = 630 Score = 63.3 bits (153), Expect = 8e-08, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 3/69 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPSGM 156 L V+ L++ L G D A+ AVK FQ HGL G+ Sbjct: 431 GVLRENARGAEVRTLQQTLQQLGYKDAGGNEIKADGAYGQRTSEAVKAFQRAHGLQDDGV 490 Query: 157 VDSSTLEAM 165 V T A+ Sbjct: 491 VGRDTQAAL 499 >gi|225568373|ref|ZP_03777398.1| hypothetical protein CLOHYLEM_04450 [Clostridium hylemonae DSM 15053] gi|225162821|gb|EEG75440.1| hypothetical protein CLOHYLEM_04450 [Clostridium hylemonae DSM 15053] Length = 267 Score = 63.3 bits (153), Expect = 8e-08, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 29/64 (45%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S + L+E+LI G S G + AVK +Q HGL G+V +T Sbjct: 201 LSPGASGGITKLLQEKLISLGYSCGSSGADGILGQDTQRAVKAYQKDHGLAADGIVGPAT 260 Query: 162 LEAM 165 + + Sbjct: 261 WKKL 264 >gi|262204653|ref|YP_003275861.1| cell wall hydrolase/autolysin [Gordonia bronchialis DSM 43247] gi|262088000|gb|ACY23968.1| cell wall hydrolase/autolysin [Gordonia bronchialis DSM 43247] Length = 396 Score = 63.3 bits (153), Expect = 8e-08, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 17/81 (20%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLS-----------------VAFDAYVESAVKL 144 LG+ +V +R L G L FDA + AV+ Sbjct: 4 FRLGDHGSAVAEIRSILAGRGLLSAPSSQPTGLTNGTRSADGWTAPEDIFDAETDHAVRA 63 Query: 145 FQMRHGLDPSGMVDSSTLEAM 165 FQ GL G+V +T A+ Sbjct: 64 FQQERGLIVDGIVGPATYRAL 84 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V L+ RL G + + F ++AV+L+Q +GL G+ +TL ++ Sbjct: 104 MVGDDVATLQSRLQNLGYY--TSLVDGVFGESTDNAVRLYQSEYGLSSDGICGPATLRSL 161 >gi|145223739|ref|YP_001134417.1| peptidoglycan binding domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|315444065|ref|YP_004076944.1| negative regulator of beta-lactamase expression [Mycobacterium sp. Spyr1] gi|145216225|gb|ABP45629.1| Peptidoglycan-binding domain 1 protein [Mycobacterium gilvum PYR-GCK] gi|315262368|gb|ADT99109.1| negative regulator of beta-lactamase expression [Mycobacterium sp. Spyr1] Length = 288 Score = 63.3 bits (153), Expect = 8e-08, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 15/82 (18%) Query: 95 PELPIRP-----LHLGNSSVSVQRLRERL-----IISGDLDPSKGLSVAFDAYVESAVKL 144 P +P+ L+ G+ V L+ RL +GDL + + E+AV+ Sbjct: 199 PTVPVGEYAEVLLYRGSRGPQVAELQRRLKHAYAAYAGDL----RIDGVYGPDTEAAVRE 254 Query: 145 FQMR-HGLDPSGMVDSSTLEAM 165 FQ R GL G+V +T A+ Sbjct: 255 FQRRTAGLKVDGVVGPATAAAL 276 >gi|253573824|ref|ZP_04851167.1| spore cortex-lytic enzyme [Paenibacillus sp. oral taxon 786 str. D14] gi|251847352|gb|EES75357.1| spore cortex-lytic enzyme [Paenibacillus sp. oral taxon 786 str. D14] Length = 240 Score = 62.9 bits (152), Expect = 8e-08, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L LG++S V L+ RL G + L+ + + AV+ FQ R+GL G Sbjct: 51 QAASGTLKLGSTSGDVWDLQYRLKALGIFNEQ--LTGYYGTKTQQAVRTFQSRYGLQVDG 108 Query: 156 MVDSSTLEAM 165 + T A+ Sbjct: 109 VAGPQTWAAL 118 >gi|28210330|ref|NP_781274.1| gamma-D-glutamyl-L-diamino acid endopeptidase I [Clostridium tetani E88] gi|28202767|gb|AAO35211.1| gamma-D-glutamyl-L-diamino acid endopeptidase I [Clostridium tetani E88] Length = 423 Score = 62.9 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+ V+ ++ L G + + + + E+AV+ FQ GL G+V +T Sbjct: 4 LKLGSRGPRVREVQSILKQMGYYRGT--VDGIYGSQTEAAVRNFQKNMGLIADGIVGENT 61 Query: 162 LEAM 165 A+ Sbjct: 62 YRAL 65 >gi|332709864|ref|ZP_08429820.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332351235|gb|EGJ30819.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 393 Score = 62.9 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 18/130 (13%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGW---------------PELPIRPLHLGNSSV 109 +D P + KE+I + + + Y+ + + L R L G Sbjct: 17 ADTPAVLKESIQKLFQWLKEYKLVAYHRIYLLLLIAILSIVGMAEEALAQRVLREGRRGA 76 Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 V ++ RL G + + F + ++AV FQ + GL G V T + P Sbjct: 77 DVTEVQRRLRELGYFNRQP--TGYFGSITKNAVIRFQRKKGLPADGEVGPRTRAKL-FPS 133 Query: 170 DLRIRQLQVN 179 R + N Sbjct: 134 QTRAAPSRRN 143 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ +V ++ +L G + + F E AV FQ +GL G+ Sbjct: 144 VTQSGLRRGSRGSAVTEVQRQLRQLGYFNADP--TGYFGPVTEQAVIEFQTDYGLRADGI 201 Query: 157 VDSSTLEAM 165 V S T + Sbjct: 202 VGSQTRAEL 210 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 6/80 (7%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR-HGLDPS 154 + L G+ V+RL+E L G + + + E AV FQ+R + L P+ Sbjct: 246 PIRRSELRPGDRGPEVRRLQEELRSRGFNPGA--IDGRYGEETEDAVFKFQIRNNNLLPT 303 Query: 155 GMVDSSTLEAM---NVPVDL 171 G+ D TL+A+ N+ + Sbjct: 304 GIADLQTLQALGLININPEA 323 >gi|261401380|ref|ZP_05987505.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria lactamica ATCC 23970] gi|269208587|gb|EEZ75042.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria lactamica ATCC 23970] Length = 326 Score = 62.9 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 73/233 (31%), Gaps = 73/233 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 33 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWHIPKSIQKE 92 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + G N + + Sbjct: 93 ---------------------RGDGVKTI------------------AAGPDNPLGPVFV 113 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P +V + GCVR+++ L + + Sbjct: 114 RLGDPKLGLGIHGTNAP---ASVPGVRSHGCVRMKSPDAL--------------EFAKTI 156 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS-----IIQFRDDIYGLDNVHVGII 420 + V +Y A +D+ + FR D YG +N+ + Sbjct: 157 ASGSPASV----------IYQMAGLNEDADRNLWLAAFR-DPYGKNNLDTASL 198 >gi|157960800|ref|YP_001500834.1| peptidoglycan-binding domain-containing protein [Shewanella pealeana ATCC 700345] gi|157845800|gb|ABV86299.1| Peptidoglycan-binding domain 1 protein [Shewanella pealeana ATCC 700345] Length = 558 Score = 62.9 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%) Query: 94 WPELPIRPLHLGNSS--VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W +P +G S+ +Q L L D + L FD+ +E +K FQ +HGL Sbjct: 469 WQAPQNQPKEIGQSANQAQIQWLENSLARIND--RAPRLVDYFDSELEQQLKAFQRQHGL 526 Query: 152 DPSGMVDSSTLEAMN 166 G+ + TL +N Sbjct: 527 SADGIAGTQTLIQLN 541 >gi|330958991|gb|EGH59251.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 321 Score = 62.9 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 53/176 (30%), Gaps = 45/176 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ + G+ V + VGR +PI +++ NP Sbjct: 89 RFILPPGPREG-IVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ + Sbjct: 148 TWTPPASIKAE-----------------------------------HAADGDPLPDVVPA 172 Query: 303 GKINAMASTKIEF-YSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 G N + K S H + + F +R + GC R+ N+++L Sbjct: 173 GPDNPLGPFKFGLGMSGYLI--HGSNKK--FGIGMRT-SHGCFRMYNDNVLELADM 223 >gi|17229032|ref|NP_485580.1| hypothetical protein alr1540 [Nostoc sp. PCC 7120] gi|17135360|dbj|BAB77906.1| alr1540 [Nostoc sp. PCC 7120] Length = 128 Score = 62.9 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 6/112 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 ++ L G+S +V L+ L G + F A ++AV FQ +GL G Sbjct: 11 KVAEPVLRQGDSGAAVTELQRLLNAKG---VKVSVDGIFGAGTQAAVIKFQRANGLTADG 67 Query: 156 MVDSSTLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 +V S T A+ +R+ + +N + Q L ++ IPAA+L Sbjct: 68 IVGSKTWVALRKVPTPTIRLVDVALNYD-PTQFPHQVAALEWLQSQIPAATL 118 >gi|288554241|ref|YP_003426176.1| endopeptidase SpoIID/LytB [Bacillus pseudofirmus OF4] gi|288545401|gb|ADC49284.1| cell wall lytic activity, endopeptidase (spoIID/lytB) [Bacillus pseudofirmus OF4] Length = 527 Score = 62.9 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L L N +V L+++L G S ++ F +SAVK FQ H L G+V ++ Sbjct: 230 TLRLNNHGDAVSSLQQKLKDLGYYTSS--ITGTFGPQTDSAVKDFQRAHNLVADGIVGAN 287 Query: 161 TLEAM 165 T A+ Sbjct: 288 TYRAL 292 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G +S +VQ L++ L +G + + + + AV+ FQ + L G+ T Sbjct: 140 LRQGTTSGAVQELQQLLSRAGHFNSNA--TGYYGRVTTEAVRAFQRQQNLTVDGIAGPKT 197 Query: 162 LEAM 165 + A+ Sbjct: 198 ITAL 201 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G + +V ++ +L G + + + E AV+ FQ + GL G+ +T Sbjct: 326 LRIGTTGAAVTNMQAQLRTIGLFGQAP--TGYYGTVTEQAVRAFQRQQGLTVDGIAGPAT 383 Query: 162 LEAM 165 L + Sbjct: 384 LGKL 387 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + L G + V+ L++ L G + + + + AVK FQ +GL +G Sbjct: 44 ALGDQALSEGMNDPDVKDLQKALKDRGHFN-YHTATGYYGSITTEAVKAFQKANGLPATG 102 Query: 156 MVDSSTLEAM 165 D +TL + Sbjct: 103 NADLATLAQL 112 >gi|156976350|ref|YP_001447256.1| hypothetical protein VIBHAR_05123 [Vibrio harveyi ATCC BAA-1116] gi|156527944|gb|ABU73029.1| hypothetical protein VIBHAR_05123 [Vibrio harveyi ATCC BAA-1116] Length = 308 Score = 62.9 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 63/202 (31%), Gaps = 55/202 (27%) Query: 189 QKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + +++N+ L V V +GR+ R TP + + I++ NP W P Sbjct: 97 PDVPHKGIVINLAELRLYYFPAKENVVHIFPVGIGRIGRDTPEMTTSISQKRPNPTWTPP 156 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI + + A P + G N Sbjct: 157 SSI-RAEYKAKGIDLPAVV----------------------------------PAGPDNP 181 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 + + + Y +H T + F +R +SGC+R+ P + Sbjct: 182 LGMFALRLAYGHGEYLIHGTNKD--FGIGMR-VSSGCIRM-------------DPNDIEW 225 Query: 367 HIEEVVKTRKTTPVKLATEVPV 388 ++V + K + V V Sbjct: 226 LFDKVRRGEKVKIIN--QPVKV 245 >gi|170731554|ref|YP_001763501.1| peptidoglycan binding domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169814796|gb|ACA89379.1| Peptidoglycan-binding domain 1 protein [Burkholderia cenocepacia MC0-3] Length = 266 Score = 62.9 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 3/115 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L LG+ V L+ +L+ +G + + SAV FQ HGL G+ Sbjct: 3 KTLRLGDRGADVSYLQRQLVAAG---ARLDTDAIYGSATRSAVMAFQASHGLVADGIAGP 59 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 T ++ +L R L+ + + + + + +G+ Sbjct: 60 KTWSTLSAGRRDPRHLTDADLQRAADRLQVDLAAVRAVNEVESRGAGFLPDGRPV 114 >gi|312622221|ref|YP_004023834.1| spore cortex-lytic enzyme [Caldicellulosiruptor kronotskyensis 2002] gi|312202688|gb|ADQ46015.1| spore cortex-lytic enzyme [Caldicellulosiruptor kronotskyensis 2002] Length = 225 Score = 62.9 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 4/91 (4%) Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 IA YQ + + + + + G++ V +++RL G D + Y+ A Sbjct: 20 IANYQHLKFKYALSPIILS--YYGSTGPEVIEIQKRLKQWGYYDGPIDGIYGYKTYM--A 75 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 V+ FQ ++GL G+ S TL A+ + R Sbjct: 76 VRYFQAKNGLKVDGIAGSETLRALGIVTTTR 106 >gi|160880026|ref|YP_001558994.1| peptidoglycan binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160428692|gb|ABX42255.1| Peptidoglycan-binding domain 1 protein [Clostridium phytofermentans ISDg] Length = 635 Score = 62.9 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 LG ++R+++RL G L + ++ F ESAVK Q +GL G V T+ Sbjct: 248 KLGMDGADIKRIQQRLYEMGYLATADMVTGHFGDVTESAVKKMQENNGLGVDGKVGKMTV 307 Query: 163 EAM 165 + + Sbjct: 308 DLL 310 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +G +V +++RL+ G ++ ++ + + + AVK+FQ + L G++ T E Sbjct: 177 IGVRHSTVMEIQQRLMDLGFMEDAEP-TDYYGSITAEAVKMFQRQSDLKQDGILGPDTFE 235 Query: 164 AM 165 + Sbjct: 236 ML 237 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 LG+S +V+R++E L G L S ++ F E AVK FQ +GL G V T+ Sbjct: 393 LGDSGDAVKRIQELLNKYGYLS-SANMTGYFGEVTEDAVKSFQKNNGLSADGNVGVMTMT 451 Query: 164 AMNVPVDLRI 173 + ++ Sbjct: 452 KLTSSDVVKA 461 Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V ++RL G L + + AVK FQ R+ L G + ST Sbjct: 320 IAYGEQSDIVLAAQKRLKELGYLTTTPDG--KYGNDTSVAVKQFQSRNDLVVDGFLGPST 377 Query: 162 LEAM 165 E + Sbjct: 378 REVL 381 >gi|302871645|ref|YP_003840281.1| spore cortex-lytic enzyme [Caldicellulosiruptor obsidiansis OB47] gi|302574504|gb|ADL42295.1| spore cortex-lytic enzyme [Caldicellulosiruptor obsidiansis OB47] Length = 225 Score = 62.9 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G++ V ++ RL G D + Y+ AV+ FQ ++GL G+ S TL Sbjct: 40 YGSTGPEVIEIQRRLKQWGYYDGPIDGIYGYKTYM--AVRYFQAKNGLKVDGIAGSETLR 97 Query: 164 AMNVPVDLR 172 A+ + R Sbjct: 98 ALGIVTTTR 106 >gi|113478151|ref|YP_724212.1| peptidoglycan binding domain-containing protein [Trichodesmium erythraeum IMS101] gi|110169199|gb|ABG53739.1| Peptidoglycan-binding domain 1 [Trichodesmium erythraeum IMS101] Length = 163 Score = 62.9 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LH G+ V +L+ +L + G + F + AVK FQ GL G+V T Sbjct: 99 LHHGSRGHRVAKLQHQLGLMGYFHHPRATG-YFGHKTKYAVKAFQRDVGLRADGIVGPRT 157 Query: 162 LEAM 165 A+ Sbjct: 158 RAAL 161 >gi|53802744|ref|YP_112601.1| general secretion pathway protein A [Methylococcus capsulatus str. Bath] gi|53756505|gb|AAU90796.1| general secretion pathway protein A [Methylococcus capsulatus str. Bath] Length = 549 Score = 62.9 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 5/75 (6%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L G SS +V+ LR+ FD +++ V FQ +HGL Sbjct: 470 PAANVTVLRPGESSPAVKWLRQHFPA----KKKPADPQRFDEALKAQVAAFQKQHGLIVD 525 Query: 155 GMVDSST-LEAMNVP 168 G V T + +N Sbjct: 526 GTVGPHTFIRLLNET 540 >gi|52081895|ref|YP_080686.1| N-acetylmuramoyl-L-alanine amidase [Bacillus licheniformis ATCC 14580] gi|52787285|ref|YP_093114.1| BlyA [Bacillus licheniformis ATCC 14580] gi|52005106|gb|AAU25048.1| N-acetylmuramoyl-L-alanine amidase [Bacillus licheniformis ATCC 14580] gi|52349787|gb|AAU42421.1| BlyA [Bacillus licheniformis ATCC 14580] Length = 359 Score = 62.9 bits (152), Expect = 9e-08, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V+ L++RLI +G P G ++ AVK Q + G+ G+ +T Sbjct: 195 LKKGASGSQVKALQKRLIAAGFSLPKYGADGSYGNETVQAVKALQKKAGIAVDGIYGPAT 254 Query: 162 LEAM 165 +A+ Sbjct: 255 EKAL 258 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 106 NSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +V +++E L + G+ + +AVK FQ+ HGL G+ T Sbjct: 291 MKGTAVWQIQEALAALYFYPDKEAKNNGIDGYYGPKTANAVKRFQLMHGLSADGIYGPKT 350 Query: 162 ---LEAM 165 +EA+ Sbjct: 351 KAKIEAL 357 >gi|300864057|ref|ZP_07108957.1| hypothetical protein OSCI_580016 [Oscillatoria sp. PCC 6506] gi|300337936|emb|CBN54103.1| hypothetical protein OSCI_580016 [Oscillatoria sp. PCC 6506] Length = 203 Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+ I+ L LG+S+ V++L+ +L G + V AV+ FQ L+ Sbjct: 128 PQTGIKLLKLGSSNGCVKQLQLQLAALGYYRGKINGRFEYSTQV--AVQQFQQDSSLEAD 185 Query: 155 GMVDSSTLEAMN 166 G+V S T +A+N Sbjct: 186 GIVGSVTRKALN 197 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 24/55 (43%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V L+ RL G + + F + A+ FQ + L SG++DS T + Sbjct: 64 VVELQNRLKELGYFPKNVKSTGFFGTITQEALAEFQCANNLLSSGILDSETSAKL 118 >gi|319644741|ref|ZP_07998974.1| N-acetylmuramoyl-L-alanine amidase cwlL [Bacillus sp. BT1B_CT2] gi|317392550|gb|EFV73344.1| N-acetylmuramoyl-L-alanine amidase cwlL [Bacillus sp. BT1B_CT2] Length = 359 Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+S V+ L++RLI +G P G ++ AVK Q G+ G+ +T Sbjct: 195 LKKGSSGSKVRALQKRLIAAGFSLPKYGADGSYGDETVQAVKALQKNAGIAVDGIYGPAT 254 Query: 162 LEAM 165 +A+ Sbjct: 255 EKAL 258 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 4/66 (6%) Query: 104 LGNSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 V++++E L + G+ + +AVK FQ+ +GL G+ Sbjct: 289 PLMKGTGVRQIQEALAALYFYPDKGAKNNGIDGYYGPKTANAVKRFQLMYGLSADGIYGP 348 Query: 160 STLEAM 165 T + Sbjct: 349 KTKAKL 354 >gi|172041696|ref|YP_001801410.1| putative hydrolase [Corynebacterium urealyticum DSM 7109] gi|171853000|emb|CAQ05976.1| putative hydrolase [Corynebacterium urealyticum DSM 7109] Length = 408 Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 12/76 (15%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPS------------KGLSVAFDAYVESAVKLFQMRH 149 L +G+ S V +R L G L FDA + +A++ FQ + Sbjct: 21 LTVGDKSPRVAEVRSALARLGMLSDYGAALTASNNEQWSEEEEFFDAVLATALRAFQQQR 80 Query: 150 GLDPSGMVDSSTLEAM 165 G+ G+++ +TL A+ Sbjct: 81 GIIADGVINETTLRAL 96 Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 17/106 (16%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPL-----HLGNS----------SVSVQRLRERLI 119 +A +A + I++ G E +R L LGN V L+ +L Sbjct: 69 LATALRAFQQQRGIIADGVINETTLRALREASYKLGNRVLSLQDPQYVGDDVSELQSQLY 128 Query: 120 ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 G + F AV +Q +GL+ GMV TL A+ Sbjct: 129 DLGFYTG--RVDGHFGPDTHQAVTQYQFEYGLNSDGMVGPDTLRAL 172 >gi|56421723|ref|YP_149041.1| cell wall lytic activity [Geobacillus kaustophilus HTA426] gi|56381565|dbj|BAD77473.1| cell wall lytic activity [Geobacillus kaustophilus HTA426] Length = 451 Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 14/137 (10%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD--------ILSRGG 93 E + + R+ P + A TE+A+ +Q I+ Sbjct: 27 EWKKGMSSPEIKQLQQRLKEKGFFTYPQATGYFGAITEEAVKAFQRAMNLPATGIVDDAT 86 Query: 94 WPELPIRP-----LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 + +L P L +G+ +V L+ RL G ++ + A AVK FQ Sbjct: 87 YAKLKSAPASNDTLAIGSRGAAVSDLQRRLKQLGYF-RYPQITGYYGAVTADAVKQFQRA 145 Query: 149 HGLDPSGMVDSSTLEAM 165 +GL +G D +TLE + Sbjct: 146 NGLPATGRADRATLERL 162 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L +G V++L+++L G S ++ + A++ FQ +GL +G V Sbjct: 173 PSAALTVGARGDEVRKLQQQLKQLGYFTYSD-ITGYYGVLTADAIRRFQRDNGLPVTGAV 231 Query: 158 DSSTLEAM 165 D+ T + Sbjct: 232 DNQTAARL 239 Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 8/97 (8%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G V+R++ +L G ++ + AV+ FQ L +G+VDS T Sbjct: 262 LSIGALGEDVKRIQTKLKELGYF--YTAITGYYGTATADAVRRFQQAAKLPATGIVDSET 319 Query: 162 L-EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 + ++ +++ + +G YV Sbjct: 320 YERLLGQAPPTKVDVIELVAD-----AAELLGTPYVW 351 >gi|325288682|ref|YP_004264863.1| NLP/P60 protein [Syntrophobotulus glycolicus DSM 8271] gi|324964083|gb|ADY54862.1| NLP/P60 protein [Syntrophobotulus glycolicus DSM 8271] Length = 222 Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 3/78 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G++ SV L+ +L G + F ++AVK FQ L P G+V T Sbjct: 30 LKMGSTGSSVVELQIKLSSLGY--SAGTADGIFGPKTQAAVKTFQSSTSLTPDGIVGPLT 87 Query: 162 LEAMNVPVDLRIRQLQVN 179 A+N ++R + N Sbjct: 88 QNALN-SAYAKVRTTEAN 104 >gi|255659253|ref|ZP_05404662.1| endopeptidase, cell wall lytic activity [Mitsuokella multacida DSM 20544] gi|260848708|gb|EEX68715.1| endopeptidase, cell wall lytic activity [Mitsuokella multacida DSM 20544] Length = 217 Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 4/73 (5%) Query: 94 WPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 W + +G+ V ++ +L G A+ AVK FQM G++ Sbjct: 14 WFSVAGASAFRVGDQGSDVAEIQGQLANLGY---DVTADGAYGPATVEAVKSFQMTQGIN 70 Query: 153 PSGMVDSSTLEAM 165 G+V ST A+ Sbjct: 71 ADGLVGPSTYAAL 83 >gi|110635068|ref|YP_675276.1| peptidoglycan binding domain-containing protein [Mesorhizobium sp. BNC1] gi|110286052|gb|ABG64111.1| Peptidoglycan-binding domain 1 [Chelativorans sp. BNC1] Length = 300 Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 8/106 (7%) Query: 66 DIPIISKETIAQTEKAIAFYQDILSRG--GWPELPIRPL-HLGNSSVSVQRLRERLIISG 122 + P ++ + A+A Y+ + + P PL G+ +V+ L+ L +G Sbjct: 172 NGPGFARNSY-HLRLALA-YRRLAGQAVRSAPSQATTPLIRSGDRGAAVRNLQILLSAAG 229 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + G F A + A+ FQ HGL G+ +T++ + Sbjct: 230 YPVSADG---IFGAKTQQALLSFQRHHGLPADGIAGPATMKVLQGS 272 >gi|134301026|ref|YP_001114522.1| cell wall hydrolase SleB [Desulfotomaculum reducens MI-1] gi|134053726|gb|ABO51697.1| cell wall hydrolase, SleB [Desulfotomaculum reducens MI-1] Length = 234 Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L+ G+S V+ +++RL G D + F SAV+ FQ HGL G+V Sbjct: 32 TLYWGSSGTKVRAVQQRLKDWGYYDG--PVDGYFSGKTASAVRKFQAYHGLATDGIVGPK 89 Query: 161 TLEAM 165 T AM Sbjct: 90 TFSAM 94 >gi|156743286|ref|YP_001433415.1| peptidoglycan binding domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156234614|gb|ABU59397.1| Peptidoglycan-binding domain 1 protein [Roseiflexus castenholzii DSM 13941] Length = 629 Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 95 PELPIRPLHLGNSSV-SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P+ L G+S + L+ERL G P+ + F ++A + FQ RHGL Sbjct: 94 PQSSRPTLRQGSSHAEDITFLQERLNSDG-ATPALEVDGIFGPLTDAATREFQRRHGLIV 152 Query: 154 SGMVDSSTLEAMN 166 G+V T A+N Sbjct: 153 DGIVGPQTWGALN 165 >gi|21228276|ref|NP_634198.1| hypothetical protein MM_2174 [Methanosarcina mazei Go1] gi|20906735|gb|AAM31870.1| conserved protein [Methanosarcina mazei Go1] Length = 309 Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+S +V++++E LI P G + F E AV+ +Q GL G++ S Sbjct: 28 RVLRRGDSGPAVKKIQEALIFLEIPVPGAGANGIFGDETELAVRSYQEARGLKVDGVIGS 87 Query: 160 STLEAM 165 T+ ++ Sbjct: 88 ETIGSL 93 >gi|297585348|ref|YP_003701128.1| NLP/P60 protein [Bacillus selenitireducens MLS10] gi|297143805|gb|ADI00563.1| NLP/P60 protein [Bacillus selenitireducens MLS10] Length = 507 Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G S SV+ L+ RL G ++ F +SAV FQ GL G+ + Sbjct: 231 TLREGMSGDSVRALQTRLKDLGHYH--HRVTGIFGPLTKSAVISFQRNEGLTADGIAGAR 288 Query: 161 TLEAM 165 TL+AM Sbjct: 289 TLKAM 293 Score = 59.1 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 1/69 (1%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R L G V+ L+ L G L+ + F V+ FQ GL G+ Sbjct: 136 SSRLLREGVRGQDVEALQLALKQKGFLNIERATG-YFGTVTAKGVRDFQQARGLKVDGIA 194 Query: 158 DSSTLEAMN 166 T+ +N Sbjct: 195 GPQTIGRLN 203 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 1/66 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G V L+ L G + F E AV+ FQ + G+V Sbjct: 35 QTLRQGMDHPDVVELQTMLKDKGYFT-YHTATGYFGTITEEAVRKFQREANIQVDGVVGP 93 Query: 160 STLEAM 165 T + Sbjct: 94 ETYRQL 99 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 12/95 (12%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 I T+ ++A A P L G++ +V+ L+ERL +G Sbjct: 284 IAGARTLKAMQQASAA----------PAPTGFLLKEGDTGSNVRELQERLKATGHYK--H 331 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 ++ F + AV+ FQ + L G+V +S E Sbjct: 332 NVTGTFGPITKEAVRSFQSQWSLVNDGIVTASVWE 366 >gi|304436897|ref|ZP_07396861.1| endopeptidase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370096|gb|EFM23757.1| endopeptidase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 220 Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 +G+ V ++ +L G + G F AVK FQ HGL G+V Sbjct: 22 SAESFQIGDQGTDVAEIQGQLSNYGYDVAADGD---FGPATAEAVKEFQAAHGLAVDGLV 78 Query: 158 DSSTLEAM 165 ST EA+ Sbjct: 79 GPSTYEAL 86 >gi|224826667|ref|ZP_03699768.1| ErfK/YbiS/YcfS/YnhG family protein [Lutiella nitroferrum 2002] gi|224601268|gb|EEG07450.1| ErfK/YbiS/YcfS/YnhG family protein [Lutiella nitroferrum 2002] Length = 305 Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 43/166 (25%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +V++N+P L +G + V VG++ QTP + I P W +P+SI Q++ Sbjct: 43 HVVINLPQTRLFVYRDGTLLKSYPVAVGKMLTQTPTGTYAVTGIYPKPIWYVPKSI-QEE 101 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS--TK 312 M ++GK V PG N + + + Sbjct: 102 M-------------------KQQGKPVLTSV---------------PPGPDNPLGNAFVR 127 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 R MH T P +V F + GCVR+ +I +L + Sbjct: 128 FGDP-RLGLGMHGTNVP---TSVPGFRSHGCVRLKNEDIDELASTV 169 >gi|158321097|ref|YP_001513604.1| spore cortex-lytic enzyme SleB [Alkaliphilus oremlandii OhILAs] gi|158141296|gb|ABW19608.1| Spore cortex-lytic enzyme SleB [Alkaliphilus oremlandii OhILAs] Length = 228 Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+S V+ + RL G L+ G+ F AV FQ +GL P G++ + Sbjct: 29 QTLAWGSSGEDVRIAQSRLKQWGYLEG--GVDGVFGKTTYDAVIKFQKANGLTPDGVIGA 86 Query: 160 STLEAMNVP 168 T A+ + Sbjct: 87 QTRVALGMS 95 >gi|167589013|ref|ZP_02381401.1| putative phage-encoded peptidoglycan binding protein [Burkholderia ubonensis Bu] Length = 277 Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 3/93 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ LG+ V L+ RLI +G + ++ +DA E+AV Q + GL G+ Sbjct: 1 MKTRRLGDHGDDVGLLQRRLIRAGY---AVQVTHIYDAATEAAVIALQRKTGLVDDGVAG 57 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 T A+ +L R + L + Sbjct: 58 PKTYAALATGQRDPQHLALADLERAARTLGVPL 90 >gi|330945267|gb|EGH46923.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 272 Score = 62.9 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 45/176 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ + G+ V + VGR +PI +++ NP Sbjct: 89 RFILPPGPREG-IVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ + Sbjct: 148 TWTPPASIKAE-----------------------------------HAADGDPLPDVVPA 172 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 G N + K + Y +H + + F +R + GC R+ N+++L Sbjct: 173 GPDNPLGPFKFGL--GLSGYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|209696096|ref|YP_002264026.1| general secretion pathway protein A [Aliivibrio salmonicida LFI1238] gi|208010049|emb|CAQ80372.1| general secretion pathway protein A [Aliivibrio salmonicida LFI1238] Length = 519 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 8/80 (10%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + R + LG+ ++ L + L + L+ S F E VK FQ GL Sbjct: 436 PIMTKRAMRLGDEGEAIVELNQLLSFA--LEQPLTDSNRFTEETEEQVKQFQAIFGLKTD 493 Query: 155 GMVDSSTLEAM------NVP 168 G+V SSTL + NVP Sbjct: 494 GVVGSSTLMWLDSVINTNVP 513 >gi|304404834|ref|ZP_07386495.1| spore cortex-lytic enzyme [Paenibacillus curdlanolyticus YK9] gi|304346641|gb|EFM12474.1| spore cortex-lytic enzyme [Paenibacillus curdlanolyticus YK9] Length = 217 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G SV V L+ RL + G P++ ++ + + AV+ FQ +GL G+ S T Sbjct: 33 LRYGYQSVDVPDLQFRLKVLGYFKPAQ-VTTYYGMMTQDAVERFQSDYGLPADGVAGSKT 91 Query: 162 LEAM 165 + Sbjct: 92 WSLL 95 >gi|319647510|ref|ZP_08001730.1| N-acetylmuramoyl-L-alanine amidase cwlL [Bacillus sp. BT1B_CT2] gi|317390358|gb|EFV71165.1| N-acetylmuramoyl-L-alanine amidase cwlL [Bacillus sp. BT1B_CT2] Length = 224 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+S V+ L++RLI +G P G ++ AVK Q + G+ G+ +T Sbjct: 60 LKKGSSGSQVKALQKRLIAAGFSLPKYGADGSYGNETVQAVKALQKKAGIAVDGIYGPAT 119 Query: 162 LEAM 165 +A+ Sbjct: 120 EKAL 123 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%) Query: 104 LGNSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +V++++E L + G+ + +AVK FQM HGL G+ Sbjct: 154 PLMKGTAVRQVQEALAALYFYPDKGAKNNGIDGYYGPKTANAVKRFQMMHGLSADGIYGP 213 Query: 160 STLEAM 165 T + Sbjct: 214 KTKAKL 219 >gi|312109409|ref|YP_003987725.1| NLP/P60 protein [Geobacillus sp. Y4.1MC1] gi|311214510|gb|ADP73114.1| NLP/P60 protein [Geobacillus sp. Y4.1MC1] Length = 452 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 13/126 (10%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 +T+A+ +A+A S+ P+ IR L +G++ V++++ +L G S+ ++ Sbjct: 240 QTLAKINEAVA-----GSKTPAPKAAIR-LTIGSTGPEVKKVQTKLKQLGYFTHSE-ITG 292 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTL-EAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 + + AVK FQ G+ +G+VD+ T M ++ + + + + Sbjct: 293 YYGSITAEAVKQFQKSAGIKATGVVDAETYERLMGQAPQKKLDAIALVAD-----AAELL 347 Query: 192 GLRYVL 197 G YV Sbjct: 348 GKPYVW 353 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 15/110 (13%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 ++ T A+ ++A A + +G+ V+ L++ L G Sbjct: 83 VVDDATYAKLKEAAAR-------------RTAEMKIGSRGNDVKVLQQNLKQLGYFK-YP 128 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQ 177 ++ + + AVK FQ +GL +G+ D+ T++++ N ++ R ++ Sbjct: 129 EITGYYGTITQDAVKRFQQNYGLPVTGIADARTVQSIQNEVMNRRPAKIA 178 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ V +L++ L G ++ + AV+ FQ R+ L +G DS T Sbjct: 183 LAIGSQGAEVSKLQQNLKQLGYFT-YPKITGYYGTVTADAVRQFQKRYSLPATGKADSQT 241 Query: 162 LEAMN 166 L +N Sbjct: 242 LAKIN 246 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +G S+ V+ L++ L G F E AVK FQ L +G+VD +T Sbjct: 31 KVGMSAPQVKELQQLLKEKGFFTYPAATG-YFGTITEQAVKAFQASVRLPVTGVVDDATY 89 Query: 163 EAMNVPVDLRIRQLQV 178 + R ++++ Sbjct: 90 AKLKEAAARRTAEMKI 105 >gi|313893120|ref|ZP_07826697.1| NlpC/P60 family protein [Veillonella sp. oral taxon 158 str. F0412] gi|313442473|gb|EFR60888.1| NlpC/P60 family protein [Veillonella sp. oral taxon 158 str. F0412] Length = 270 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 2/84 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ SV ++++LI G + + + + AV+LFQ GL G+ Sbjct: 25 VGATTLQYGDKGKSVTAVQQQLIKHGY--NATDKNGVYGKETKWAVRLFQQDRGLPVDGI 82 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNL 180 V +T A+ L N Sbjct: 83 VGPATYNALMGAPRSTKAVLTQNA 106 >gi|282850480|ref|ZP_06259859.1| NlpC/P60 family protein [Veillonella parvula ATCC 17745] gi|294792103|ref|ZP_06757251.1| endopeptidase, cell wall lytic activity [Veillonella sp. 6_1_27] gi|282579973|gb|EFB85377.1| NlpC/P60 family protein [Veillonella parvula ATCC 17745] gi|294457333|gb|EFG25695.1| endopeptidase, cell wall lytic activity [Veillonella sp. 6_1_27] Length = 270 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 2/84 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ SV ++++LI G + + + + AV+LFQ GL G+ Sbjct: 25 VGATTLQYGDKGKSVTAVQQQLIKHGY--NATDKNGVYGKETKWAVRLFQQDRGLPVDGI 82 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNL 180 V +T A+ L N Sbjct: 83 VGPATYNALMGAPRSTKAVLTQNA 106 >gi|269798242|ref|YP_003312142.1| NLP/P60 protein [Veillonella parvula DSM 2008] gi|294793974|ref|ZP_06759111.1| protein P60 [Veillonella sp. 3_1_44] gi|269094871|gb|ACZ24862.1| NLP/P60 protein [Veillonella parvula DSM 2008] gi|294455544|gb|EFG23916.1| protein P60 [Veillonella sp. 3_1_44] Length = 270 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 2/84 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ SV ++++LI G + + + + AV+LFQ GL G+ Sbjct: 25 VGATTLQYGDKGKSVTAVQQQLIKHGY--NATDKNGVYGKETKWAVRLFQQDRGLPVDGI 82 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNL 180 V +T A+ L N Sbjct: 83 VGPATYNALMGAPRSTKAVLTQNA 106 >gi|118443217|ref|YP_877472.1| spore-cortex-lytic enzyme precursor [Clostridium novyi NT] gi|118133673|gb|ABK60717.1| spore-cortex-lytic enzyme precursor [Clostridium novyi NT] Length = 241 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 4/89 (4%) Query: 81 AIAFYQDILSR--GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + Y I + + + G+ + V ++ RL + + ++ Y+ Sbjct: 17 MLFSYASIPQQVIPYFNSMKTSVYKYGSKNNIVTEIQRRLKAWDYYEGALDGKYGYETYL 76 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 AVK FQ ++GL G+V STL A+ + Sbjct: 77 --AVKDFQRKNGLTVDGIVGDSTLSALGI 103 >gi|312877867|ref|ZP_07737814.1| spore cortex-lytic enzyme [Caldicellulosiruptor lactoaceticus 6A] gi|311795371|gb|EFR11753.1| spore cortex-lytic enzyme [Caldicellulosiruptor lactoaceticus 6A] Length = 225 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G++ V +++RL G D + Y+ AV+ FQ ++GL G+ S TL Sbjct: 40 YGSTGPEVIEIQKRLKQWGYYDGPIDGIYGYKTYM--AVRYFQAKNGLKVDGIAGSETLR 97 Query: 164 AMNVPVDLR 172 A+ + R Sbjct: 98 ALGIVTTTR 106 >gi|153836106|ref|ZP_01988773.1| ErfK/YbiS/YcfS/YnhG [Vibrio parahaemolyticus AQ3810] gi|260901112|ref|ZP_05909507.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus AQ4037] gi|149750860|gb|EDM61605.1| ErfK/YbiS/YcfS/YnhG [Vibrio parahaemolyticus AQ3810] gi|308109403|gb|EFO46943.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus AQ4037] Length = 308 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 40/161 (24%) Query: 189 QKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 ++ + +++N+ L G+ V V +GR+ R TP++ + I++ NP W P Sbjct: 97 PEVPHQGIVINLAELRLYYFPEGEDVVHVFPVGIGRIGRDTPVMTTSISQKRPNPTWTPP 156 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI + + + K V + V G N Sbjct: 157 ASI-RAEY---------------------RAKGVDLPAVV-------------PAGPDNP 181 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR 347 + + N Y +H T + F +R ++GC+R+ Sbjct: 182 LGLFALRLAYGNGEYLIHGTNKD--FGIGMR-VSAGCIRMD 219 >gi|295400954|ref|ZP_06810929.1| NLP/P60 protein [Geobacillus thermoglucosidasius C56-YS93] gi|294976956|gb|EFG52559.1| NLP/P60 protein [Geobacillus thermoglucosidasius C56-YS93] Length = 452 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 13/126 (10%) Query: 73 ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 +T+A+ +A+A S+ P+ IR L +G++ V++++ +L G S+ ++ Sbjct: 240 QTLAKINEAVA-----GSKTPAPKAAIR-LTIGSTGPEVKKVQTKLKQLGYFTHSE-ITG 292 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTL-EAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 + + AVK FQ G+ +G+VD+ T M ++ + + + + Sbjct: 293 YYGSITAEAVKQFQKSAGIKATGVVDAETYERLMGQAPQKKLDAIALVAD-----AAELL 347 Query: 192 GLRYVL 197 G YV Sbjct: 348 GKPYVW 353 Score = 59.8 bits (144), Expect = 9e-07, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 15/110 (13%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 ++ T A+ ++A A + +G+ V+ L++ L G Sbjct: 83 VVDDATYAKLKEAAAR-------------RTAEMKIGSRGNDVKVLQQNLKQLGYFK-YP 128 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQLQ 177 ++ + + AVK FQ +GL +G+ D+ T++++ N ++ R Q+ Sbjct: 129 EITGYYGTITQDAVKRFQQNYGLPVTGIADARTVQSIQNEVMNRRPAQIA 178 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ V +L++ L G ++ + AV+ FQ R+ L +G DS T Sbjct: 183 LAIGSQGAEVSKLQQNLKQLGYFT-YPKITGYYGTVTADAVRQFQKRYSLPATGKADSQT 241 Query: 162 LEAMN 166 L +N Sbjct: 242 LAKIN 246 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +G S+ V+ L++ L G F E AVK FQ L +G+VD +T Sbjct: 31 KVGMSAPQVKELQQLLKEKGFFTYPAATG-YFGTITEQAVKAFQASVRLPVTGVVDDATY 89 Query: 163 EAMNVPVDLRIRQLQV 178 + R ++++ Sbjct: 90 AKLKEAAARRTAEMKI 105 >gi|294498419|ref|YP_003562119.1| endopeptidase LytF [Bacillus megaterium QM B1551] gi|294348356|gb|ADE68685.1| endopeptidase LytF (cell wall hydrolase) [Bacillus megaterium QM B1551] Length = 303 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 YQ ++ L G +S V+++++ L G + + + F ++AV Sbjct: 88 YQALIGNSTSTVTNGTLLKYGMTSNEVEKVQQLLKDKGYFNATP--TGYFGTVTQTAVMN 145 Query: 145 FQMRHGLDPSGMVDSSTLEAM 165 FQ HGL G+V +TL A+ Sbjct: 146 FQRDHGLAVDGIVGPATLNAL 166 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + L G + V+ L++ L G S + F + + +V FQ H L G Sbjct: 24 ALGDKLLKEGMTDPDVKELQDVLRQKG--IFSATSTGYFGSITKDSVLSFQRSHSLTADG 81 Query: 156 MVDSSTLEAM 165 +V S+T +A+ Sbjct: 82 IVGSNTYQAL 91 >gi|225175303|ref|ZP_03729298.1| carboxyl-terminal protease [Dethiobacter alkaliphilus AHT 1] gi|225169055|gb|EEG77854.1| carboxyl-terminal protease [Dethiobacter alkaliphilus AHT 1] Length = 469 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G+ ++VQ L++ L LD + + +D+ E AV+ FQ HGL+ +G ++ Sbjct: 380 ARDLKPGDEDMNVQFLQQMLKS---LDYNVNDTGVYDSATERAVRSFQNEHGLNATGELN 436 Query: 159 SSTLEAMNVPVDLRIRQLQVN 179 T +N + R L+ N Sbjct: 437 LETRTQLN---EEIDRLLEEN 454 >gi|219670721|ref|YP_002461156.1| peptidoglycan-binding protein [Desulfitobacterium hafniense DCB-2] gi|219540981|gb|ACL22720.1| Peptidoglycan-binding domain 1 protein [Desulfitobacterium hafniense DCB-2] Length = 433 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +R L G+ V ++ RL G + + F E+AV FQ GL+P G+V Sbjct: 1 MRMLRRGSRGNDVAEVQVRLSELGYIPG--PIDGIFGPKTEAAVIRFQKDRGLNPDGIVG 58 Query: 159 SSTLEAM 165 T +A+ Sbjct: 59 PLTYQAL 65 >gi|328469263|gb|EGF40209.1| hypothetical protein VP10329_10281 [Vibrio parahaemolyticus 10329] Length = 308 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 40/161 (24%) Query: 189 QKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 ++ + +++N+ L G+ V V +GR+ R TP++ + I++ NP W P Sbjct: 97 PEVPHQGIVINLAELRLYYFPEGEDVVHVFPVGIGRIGRDTPVMTTSISQKRPNPTWTPP 156 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI + KG V + V G N Sbjct: 157 ASIRAE--------------------YRAKG--VDLPAVV-------------PAGPDNP 181 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR 347 + + N Y +H T + F +R ++GC+R+ Sbjct: 182 LGLFALRLAYGNGEYLIHGTNKD--FGIGMR-VSAGCIRMD 219 >gi|75911176|ref|YP_325472.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75704901|gb|ABA24577.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 128 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 6/106 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+S +V L+ L G + F A ++AV FQ +GL G+V S T Sbjct: 17 LRQGDSGAAVTELQRLLNAKG---VKVSVDGIFGAGTQAAVVKFQRANGLTADGIVGSKT 73 Query: 162 LEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 A+ +R+ + +N + Q L ++ IPAA+L Sbjct: 74 WVALRKVPTPTIRLVDVALNYD-PTQFPHQVSALEWLQSQIPAATL 118 >gi|289673230|ref|ZP_06494120.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. syringae FF5] Length = 311 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 45/176 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ + G+ V + VGR +PI +++ NP Sbjct: 79 RFILPPGPREG-IVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNP 137 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ + Sbjct: 138 TWTPPASIKAE-----------------------------------HAADGDPLPDVVPA 162 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 G N + K + Y +H + + F +R + GC R+ N+++L Sbjct: 163 GPDNPLGPFKFGL--GLSGYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 213 >gi|89897594|ref|YP_521081.1| hypothetical protein DSY4848 [Desulfitobacterium hafniense Y51] gi|89337042|dbj|BAE86637.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 433 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +R L G+ V ++ RL G + + F E+AV FQ GL+P G+V Sbjct: 1 MRMLRRGSRGNDVAEVQVRLSELGYIPG--PIDGIFGPKTEAAVIRFQKDRGLNPDGIVG 58 Query: 159 SSTLEAM 165 T +A+ Sbjct: 59 PLTYQAL 65 >gi|28901325|ref|NP_800980.1| hypothetical protein VPA1470 [Vibrio parahaemolyticus RIMD 2210633] gi|260362882|ref|ZP_05775751.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus K5030] gi|260880170|ref|ZP_05892525.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus AN-5034] gi|260895287|ref|ZP_05903783.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus Peru-466] gi|28809872|dbj|BAC62813.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308085792|gb|EFO35487.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus Peru-466] gi|308092500|gb|EFO42195.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus AN-5034] gi|308111963|gb|EFO49503.1| ErfK/YbiS/YcfS/YnhG family protein [Vibrio parahaemolyticus K5030] Length = 308 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 58/161 (36%), Gaps = 40/161 (24%) Query: 189 QKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 ++ + +++N+ L G+ V V +GR+ R TP++ + I++ NP W P Sbjct: 97 PEVPHQGIVINLAELRLYYFPEGEDVVHVFPVGIGRIGRDTPVMTTSISQKRPNPTWTPP 156 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI + KG V + V G N Sbjct: 157 ASIRAE--------------------YRAKG--VDLPAVV-------------PAGPDNP 181 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR 347 + + N Y +H T + F +R ++GC+R+ Sbjct: 182 LGLFALRLAYGNGEYLIHGTNKD--FGIGMR-VSAGCIRMD 219 >gi|163800189|ref|ZP_02194090.1| hypothetical protein 1103602000595_AND4_05899 [Vibrio sp. AND4] gi|159175632|gb|EDP60426.1| hypothetical protein AND4_05899 [Vibrio sp. AND4] Length = 308 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 60/182 (32%), Gaps = 42/182 (23%) Query: 189 QKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + +++N+ L V V +GR+ R TP + + I++ NP W P Sbjct: 97 PDVPHKGIVINLAELRLYYFPPKQNVVHIFPVGIGRIGRDTPEMTTSISQKRPNPTWTPP 156 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI + + A P + G N Sbjct: 157 SSI-RAEYKAKGIDLPAVV----------------------------------PAGPDNP 181 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 + + + Y +H T + F +R +SGC+R+ + D+ WL + Sbjct: 182 LGMFALRLAYGHGEYLIHGTNKD--FGIGMR-VSSGCIRM-DPSDI-EWLFDKVRRGEKV 236 Query: 367 HI 368 I Sbjct: 237 KI 238 >gi|323494305|ref|ZP_08099417.1| hypothetical protein VIBR0546_07107 [Vibrio brasiliensis LMG 20546] gi|323311468|gb|EGA64620.1| hypothetical protein VIBR0546_07107 [Vibrio brasiliensis LMG 20546] Length = 301 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 66/197 (33%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L E V +GRV R TP + ++I++ NP W P SI +K+ Sbjct: 93 IVINLAELRLYYFEPEINKVHIFPVGIGRVGRDTPEMVTKISQKRPNPTWTPPASI-RKE 151 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 +A + P + G N + + Sbjct: 152 YLAKGIELPAVV----------------------------------PAGPENPLGEYALR 177 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 Y +H T + F +R +SGC+R+ + D+ WL + + Sbjct: 178 LAHGAGDYLIHGTNKD--FGIGLR-VSSGCIRM-DPKDI-EWLFPQVKLGEQVRV----- 227 Query: 374 TRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 228 INEPIKVALEPDRSVFL 244 >gi|297194627|ref|ZP_06912025.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] gi|297152365|gb|EFH31700.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] Length = 200 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 95 PELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P+ P L G+S +V L++RL+ L P FD VE AVK++Q G+ Sbjct: 121 PDKPAGGTLRRGDSGAAVVDLQQRLMQL-WLYPYDEADGRFDEDVEQAVKVYQWDRGIQG 179 Query: 154 S--GMVDSSTLEAM 165 G+ T A+ Sbjct: 180 DPLGVYGPHTRRAL 193 >gi|258510344|ref|YP_003183778.1| Peptidoglycan-binding domain 1 protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477070|gb|ACV57389.1| Peptidoglycan-binding domain 1 protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 792 Score = 62.5 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 3/97 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ V L+ L G + FDA E+ VK FQ GL G+V T Sbjct: 57 LSYGSTGAYVAILQNALNALGY--DVGQATGVFDATTEAQVKAFQQAEGLGVDGIVGPMT 114 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 A+ V RQ+ L R L++ R V Sbjct: 115 WGALAKAVADY-RQVMTVLTRPSSLVQHVEWKRIVWN 150 >gi|28869470|ref|NP_792089.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28852712|gb|AAO55784.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 321 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 45/176 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ + G+ V + VGR +PI +++ NP Sbjct: 89 RFILPPGPREG-IVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ + Sbjct: 148 TWTPPASIKAE-----------------------------------HAADGDPLPNVVPA 172 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 G N + K + Y +H + + F +R + GC R+ N+++L Sbjct: 173 GPDNPLGPFKFGL--GLSGYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|20090011|ref|NP_616086.1| hypothetical protein MA1145 [Methanosarcina acetivorans C2A] gi|19914978|gb|AAM04566.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans C2A] Length = 320 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 35/66 (53%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+S +V++++E LII G P G F E AV+ +Q GL G++ + Sbjct: 28 RVLGRGDSGPAVKKVQEALIILGIPVPKVGADGVFGGETELAVRSYQEARGLKVDGIIGA 87 Query: 160 STLEAM 165 T+ ++ Sbjct: 88 ETIGSL 93 >gi|213968114|ref|ZP_03396259.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. tomato T1] gi|301384911|ref|ZP_07233329.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. tomato Max13] gi|302062889|ref|ZP_07254430.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. tomato K40] gi|302135226|ref|ZP_07261216.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927094|gb|EEB60644.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. tomato T1] gi|330875585|gb|EGH09734.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330968354|gb|EGH68614.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 321 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 45/176 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ + G+ V + VGR +PI +++ NP Sbjct: 89 RFILPPGPREG-IVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ + Sbjct: 148 TWTPPASIKAE-----------------------------------HAADGDPLPNVVPA 172 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 G N + K + Y +H + + F +R + GC R+ N+++L Sbjct: 173 GPDNPLGPFKFGL--GLSGYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|71734528|ref|YP_274260.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|289629142|ref|ZP_06462096.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|298486557|ref|ZP_07004617.1| L,D-transpeptidase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71555081|gb|AAZ34292.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298159034|gb|EFI00095.1| L,D-transpeptidase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320324946|gb|EFW81018.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329100|gb|EFW85098.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330867505|gb|EGH02214.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|331010595|gb|EGH90651.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 321 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 45/176 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ + G+ V + VGR +PI +++ NP Sbjct: 89 RFILPPGPREG-IVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ + Sbjct: 148 TWTPPASIKAE-----------------------------------HAADGDPLPDVVPA 172 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 G N + K + Y +H + + F +R + GC R+ N+++L Sbjct: 173 GPDNPLGPFKFGL--GLSGYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|330951750|gb|EGH52010.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae Cit 7] Length = 321 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 45/176 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ + G+ V + VGR +PI +++ NP Sbjct: 89 RFILPPGPREG-IVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ + Sbjct: 148 TWTPPASIKAE-----------------------------------HAADGDPLPDVVPA 172 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 G N + K + Y +H + + F +R + GC R+ N+++L Sbjct: 173 GPDNPLGPFKFGL--GLSGYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|170760217|ref|YP_001786763.1| zinc carboxypeptidase family protein [Clostridium botulinum A3 str. Loch Maree] gi|169407206|gb|ACA55617.1| zinc carboxypeptidase family protein [Clostridium botulinum A3 str. Loch Maree] Length = 423 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V++++ L G + F + E AVK FQ+ +GL G++ T Sbjct: 4 LKKGDRGSDVRKIQAVLQKIGY--DVGPIDGIFGSNTEEAVKRFQLNNGLVVDGIIGPKT 61 Query: 162 LEAMN 166 E +N Sbjct: 62 YELLN 66 >gi|188993784|ref|YP_001905794.1| peptidoglycan-binding protein [Xanthomonas campestris pv. campestris str. B100] gi|167735544|emb|CAP53759.1| peptidoglycan-binding protein [Xanthomonas campestris pv. campestris] Length = 616 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 65/171 (38%), Gaps = 19/171 (11%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDS--------DIPIISKETIA 76 +L+ K + + V ++++N ++ +D D S+ + Sbjct: 224 ALLAKADQIHATHRYYDGPKAANVAEKYENAYSQNQAALDRAHTKVSGRDFDPSSERSDP 283 Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL---SVA 133 +KA+ SR L G+SS V++L L G + Sbjct: 284 DVQKALELVHASPSR---QASAGHLLKEGSSSREVRKLESNLSALGYTASNGDAFQMDQK 340 Query: 134 FDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 FDA + AV+ FQ +GL G +TL A+ D + R LQ NL+ + Sbjct: 341 FDASTKQAVEAFQHANGLTTVDGKAGPATLRAI----DQQARSLQSNLIEL 387 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 58/152 (38%), Gaps = 11/152 (7%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVD-MGIDSDIPIISKETIAQTEKAIAFYQ 86 P + ++ E S + ++ L+ + + D + ++ A T++A+ +Q Sbjct: 294 ASPSRQASAGHLLKEGSSSREVRKLESNLSALGYTASNGDAFQMDQKFDASTKQAVEAFQ 353 Query: 87 DILSRGGWPELP--IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV----ES 140 G + P L + L+ LI G + ++ D Y+ Sbjct: 354 ---HANGLTTVDGKAGPATLRAIDQQARSLQSNLIELGF-TGTDNKPLSVDGYLGNGTRQ 409 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 AV FQ +GL +G+ D TL+++ R Sbjct: 410 AVIAFQEANGLPATGVADKGTLDSLAQQAAQR 441 >gi|70731627|ref|YP_261368.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas fluorescens Pf-5] gi|68345926|gb|AAY93532.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas fluorescens Pf-5] Length = 330 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 45/177 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ L G+ V + +GR +PI H+ I NP Sbjct: 95 RFILPPGPREG-IVINLAEYRLYYYPKGRNVVYTFPLGIGREGWGSPIAHTSITAKTPNP 153 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ + Sbjct: 154 TWTPPASIKAE-----------------------------------HAADGDPLPNVVPA 178 Query: 303 GKINAMASTKIEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 G N + K + H + + F +R + GC R+ N++++ + Sbjct: 179 GPDNPLGPFKFTLGTPGYLI--HGSNKK--FGIGMRT-SHGCFRMLNNNVLEMAGMV 230 >gi|330888225|gb|EGH20886.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. mori str. 301020] Length = 321 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 45/176 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ + G+ V + VGR +PI +++ NP Sbjct: 89 RFILPPGPREG-IVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ + Sbjct: 148 TWTPPASIKAE-----------------------------------HAADGDPLPDVVPA 172 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 G N + K + Y +H + + F +R + GC R+ N+++L Sbjct: 173 GPDNPLGPFKFGL--GLSGYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|257486299|ref|ZP_05640340.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 319 Score = 62.2 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 45/176 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ + G+ V + VGR +PI +++ NP Sbjct: 87 RFILPPGPREG-IVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNP 145 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ + Sbjct: 146 TWTPPASIKAE-----------------------------------HAADGDPLPDVVPA 170 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 G N + K + Y +H + + F +R + GC R+ N+++L Sbjct: 171 GPDNPLGPFKFGL--GLSGYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 221 >gi|320528988|ref|ZP_08030080.1| NlpC/P60 family protein [Selenomonas artemidis F0399] gi|320138618|gb|EFW30508.1| NlpC/P60 family protein [Selenomonas artemidis F0399] Length = 229 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 +G+ V ++ +L G + G F AVK FQ HGL GMV Sbjct: 31 SAESFQIGDQGTDVAEIQGQLSSVGYDVVADGD---FGPATAEAVKEFQAAHGLAVDGMV 87 Query: 158 DSSTLEAM 165 ST EA+ Sbjct: 88 GPSTYEAL 95 >gi|313895511|ref|ZP_07829067.1| NlpC/P60 family protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975637|gb|EFR41096.1| NlpC/P60 family protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 220 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 +G+ V ++ +L G + G F AVK FQ HGL GMV Sbjct: 22 SAESFQIGDQGTDVAEIQGQLSSVGYDVVADGD---FGPATAEAVKEFQAAHGLAVDGMV 78 Query: 158 DSSTLEAM 165 ST EA+ Sbjct: 79 GPSTYEAL 86 >gi|330977562|gb|EGH77506.1| ErfK/YbiS/YcfS/YnhG [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 321 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 44/164 (26%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ + G+ V + VGR +PI +++ NP W P SI + Sbjct: 100 IVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNPTWTPPASIKAE- 158 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ + G N + K Sbjct: 159 ----------------------------------HAADGDPLPDVVPAGPDNPLGPFKFG 184 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 + Y +H + + F +R + GC R+ N+++L Sbjct: 185 L--GLSGYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|303238362|ref|ZP_07324897.1| Peptidoglycan-binding domain 1 protein [Acetivibrio cellulolyticus CD2] gi|302594066|gb|EFL63779.1| Peptidoglycan-binding domain 1 protein [Acetivibrio cellulolyticus CD2] Length = 362 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L G S V +L+ L G L S + + + ++AVK Q ++GLD G+ Sbjct: 114 GALKEGMSGSRVTQLQSDLKKLGYLSASP--TGYYGSLTKAAVKKLQKKNGLDQDGVAGD 171 Query: 160 STLEAMN 166 +TL +N Sbjct: 172 ATLTKIN 178 Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G S V L++ L G L S + + + +SAV+ Q +GLD G+ Sbjct: 31 SKVLKEGMSGSDVTSLQKDLRTLGYLKVSP--TGYYGSLTKSAVERLQDSNGLDGDGIAG 88 Query: 159 SSTLE 163 S T+ Sbjct: 89 SKTIS 93 >gi|238018984|ref|ZP_04599410.1| hypothetical protein VEIDISOL_00846 [Veillonella dispar ATCC 17748] gi|237864468|gb|EEP65758.1| hypothetical protein VEIDISOL_00846 [Veillonella dispar ATCC 17748] Length = 269 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ SV ++++LI G + + + + AV+LFQ GL G+ Sbjct: 25 VGATTLQYGDKGKSVTAVQQQLIKHGY--NATDKNGVYGKETKWAVRLFQQDRGLPVDGI 82 Query: 157 VDSSTLEAM 165 V +T A+ Sbjct: 83 VGPATYNAL 91 >gi|226536686|gb|ACO72580.1| hypothetical cell wall lytic activity protein [Geobacillus stearothermophilus] Length = 450 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 13/141 (9%) Query: 37 DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD--------I 88 D E + + R+ P + A TEKA+ +Q I Sbjct: 22 DSQAAEWKKGMSSPEIKQLQQRLKEKGFFTYPQATGYFGAITEKAVKAFQRAMNLPATGI 81 Query: 89 LSRGGWPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 + + +L L +G+ +V L+ RL G ++ + A AVK Sbjct: 82 VDDATYAKLKKPASNDTLAIGSRGAAVSDLQRRLKQLGYF-RYPQITGYYGAVTADAVKQ 140 Query: 145 FQMRHGLDPSGMVDSSTLEAM 165 FQ +GL +G D +TLE + Sbjct: 141 FQRANGLPATGRADRATLERL 161 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G SS +++L++RL G + F A E AVK FQ L +G+VD +T Sbjct: 29 KKGMSSPEIKQLQQRLKEKGFFTYPQATG-YFGAITEKAVKAFQRAMNLPATGIVDDATY 87 Query: 163 EAMNVPVD 170 + P Sbjct: 88 AKLKKPAS 95 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ V++L+++L G S ++ + A++ FQ +GL +G VD+ T Sbjct: 176 LTIGSRGDDVRKLQQQLKQLGYFTYSD-ITGYYGVLTADAIRRFQRDNGLPVTGAVDNQT 234 Query: 162 LEAM 165 + + Sbjct: 235 VARL 238 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 8/97 (8%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G V+R++ +L G ++ + AV+ FQ L +G+VD T Sbjct: 261 LSIGALGDDVKRIQTKLKELGYF--WTDITGYYGTATADAVRRFQQAAQLPATGIVDGET 318 Query: 162 LEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 E + ++ +++ + +G YV Sbjct: 319 YERLIGQAPAAKLDVIELVAD-----AAELLGTPYVW 350 >gi|290955397|ref|YP_003486579.1| hypothetical protein SCAB_8241 [Streptomyces scabiei 87.22] gi|260644923|emb|CBG68009.1| putative membrane protein [Streptomyces scabiei 87.22] Length = 265 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GM 156 L G+S V L++RL+ D+ S +D ++ AV FQ+ +G+ G+ Sbjct: 191 AGTLREGDSGPQVSELQQRLLRIPDVYAGGSTSGRYDGVLKDAVARFQLWYGIRGDETGV 250 Query: 157 VDSSTLEAM 165 + T + + Sbjct: 251 YGNDTRQDL 259 >gi|284053377|ref|ZP_06383587.1| peptidoglycan binding domain-containing protein [Arthrospira platensis str. Paraca] Length = 492 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ V +++ RL G L S + F ++AV FQ + L G+V +T Sbjct: 53 LAIGDFGPEVTQIQNRLRELGYL--SANATGYFGEETQNAVIQFQRDNRLVQDGIVGPNT 110 Query: 162 LEAM 165 + A+ Sbjct: 111 VVAL 114 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V ++ L G ++ +D AV+ FQM +GL P+G + + Sbjct: 212 SLGPGSFGPIVGLVQRELQRLGFFPGQ--ITNFYDEVTFQAVRNFQMVNGLTPTGFIGPT 269 Query: 161 TLEAM 165 T + Sbjct: 270 TQSLL 274 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L LG+ V L++RL G + F AV FQ + + +G V Sbjct: 299 PSSILVLGSRGSDVIALQQRLQQLGYYTGM--IDGVFGESTRVAVVRFQRDNAITQTGQV 356 Query: 158 DSSTLEAMNVPVDLR 172 +T + R Sbjct: 357 GPTTQFHLARATTQR 371 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+S V L+ RL G + + F +AV FQ + + +G+V T Sbjct: 139 LGLGDSGPGVTNLQNRLRNLGFFN--NNSTGYFGPITRNAVIRFQQANSIAATGLVTEDT 196 Query: 162 LEAMNV 167 L +N Sbjct: 197 LAILNR 202 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 17/89 (19%) Query: 95 PELPIRP--------------LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 P +P P + +GN+ V+R++ RL G + ++ FD ++ Sbjct: 375 PVVPAGPGSVVRPVATNPNTYITIGNAGEDVRRIQRRLRELGFYNG--PINGFFDGQTQN 432 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAM-NVP 168 AV FQ + + +G+V +T + NV Sbjct: 433 AVIQFQQAYNITTTGIVGPTTETYLFNVT 461 >gi|261365343|ref|ZP_05978226.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria mucosa ATCC 25996] gi|288566283|gb|EFC87843.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria mucosa ATCC 25996] Length = 332 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 67/192 (34%), Gaps = 44/192 (22%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V++NIP L +G++ V VG+ QT + +I FNP W IP+SI ++ Sbjct: 33 QHVVINIPQQRLFLYTDGQLTKIYPVAVGKAMTQTNLGEHKIGAKAFNPTWHIPKSIQKE 92 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 R D V+ V P +F + ++ Sbjct: 93 ------RGDG-------------------VKSVPPGPNNPLGPVFVRLGDPKFSLG---- 123 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPTWSRYHIEEV 371 +H T P +V + GCVR+++ + + P Y + Sbjct: 124 ---------IHGTNAP---ASVPGVRSHGCVRMKSPDALEFAKTIATGAPASVIYQLAS- 170 Query: 372 VKTRKTTPVKLA 383 + + LA Sbjct: 171 LNEDANKNLWLA 182 >gi|330973775|gb|EGH73841.1| ErfK/YbiS/YcfS/YnhG [Pseudomonas syringae pv. aceris str. M302273PT] Length = 321 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 45/176 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ + G+ V + VGR +PI +++ NP Sbjct: 89 RFILPPGPREG-IVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ + Sbjct: 148 TWTPPASIKAE-----------------------------------HAADGDPLPDVVPA 172 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 G N + K + Y +H + + F +R + GC R+ N+++L Sbjct: 173 GPDNPLGPFKFGL--GLSGYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|302189952|ref|ZP_07266625.1| ErfK/YbiS/YcfS/YnhG [Pseudomonas syringae pv. syringae 642] Length = 321 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 45/176 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ + G+ V + VGR +PI +++ NP Sbjct: 89 RFILPPGPREG-IVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ + Sbjct: 148 TWTPPASIKAE-----------------------------------HAADGDPLPDVVPA 172 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 G N + K + Y +H + + F +R + GC R+ N+++L Sbjct: 173 GPDNPLGPFKFGL--GLSGYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|291566493|dbj|BAI88765.1| peptidoglycan binding domain protein [Arthrospira platensis NIES-39] Length = 492 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ V +++ RL G L S + F ++AV FQ + L G+V +T Sbjct: 53 LAIGDFGPEVTQIQNRLRELGYL--SANATGYFGEETQNAVIQFQRDNRLVQDGIVGPNT 110 Query: 162 LEAM 165 + A+ Sbjct: 111 VVAL 114 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 2/75 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L LG+ V L++RL G + FD AV FQ +G+ +G V Sbjct: 299 PSSILVLGSRGADVIALQQRLQQLGYYTGM--IDGVFDESTRVAVVRFQRDNGITQTGQV 356 Query: 158 DSSTLEAMNVPVDLR 172 +T + R Sbjct: 357 GPTTQFHLARATTQR 371 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V ++ L G ++ +D AV+ FQM +GL P+G + + Sbjct: 212 SLGPGSFGPIVGLVQRELQRLGFFPGQ--ITNFYDEVTFQAVRNFQMVNGLTPTGFIGPT 269 Query: 161 TLEAM 165 T + Sbjct: 270 TQSLL 274 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+S V L+ RL G + + F +AV FQ + + +G+V T Sbjct: 139 LGLGDSGPGVTNLQNRLRNLGFFN--NNSTGYFGPITRNAVIRFQQANSIAATGLVTEDT 196 Query: 162 LEAMNV 167 L +N Sbjct: 197 LAILNR 202 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 17/89 (19%) Query: 95 PELPIRP--------------LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 P +P P + +GN+ V+R++ RL G + ++ FD ++ Sbjct: 375 PVVPAGPGSVVRPVVTNPNTYITIGNAGEDVRRIQRRLRELGFYNG--PINGFFDGQTQN 432 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAM-NVP 168 AV FQ + + +G+V +T + NV Sbjct: 433 AVIQFQQAYNITTTGIVGPTTETYLFNVT 461 >gi|229824253|ref|ZP_04450322.1| hypothetical protein GCWU000282_01557 [Catonella morbi ATCC 51271] gi|229786607|gb|EEP22721.1| hypothetical protein GCWU000282_01557 [Catonella morbi ATCC 51271] Length = 474 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 3/74 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G S+ V+ L L G + FD +E+AVK FQ GL G V Sbjct: 385 TLAKGQSNDGVKNLALILKALGY---ELESTEYFDDKMEAAVKAFQKDKGLTEDGQVTGK 441 Query: 161 TLEAMNVPVDLRIR 174 T +A+N ++ Sbjct: 442 TADALNEATREYLK 455 >gi|153939521|ref|YP_001390735.1| zinc carboxypeptidase family protein [Clostridium botulinum F str. Langeland] gi|152935417|gb|ABS40915.1| zinc carboxypeptidase family protein [Clostridium botulinum F str. Langeland] gi|295318808|gb|ADF99185.1| zinc carboxypeptidase family protein [Clostridium botulinum F str. 230613] Length = 423 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V++++ L G + F + E AVK FQ+ +GL G++ T Sbjct: 4 LKKGDRGSDVRKIQAVLQKIGY--DVGPIDGIFGSNTEEAVKRFQLNNGLVVDGIIGPKT 61 Query: 162 LEAMN 166 E +N Sbjct: 62 YELLN 66 >gi|21229926|ref|NP_635843.1| lytic enzyme [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188989879|ref|YP_001901889.1| putative lytic enzyme [Xanthomonas campestris pv. campestris str. B100] gi|21111435|gb|AAM39767.1| lytic enzyme [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167731639|emb|CAP49817.1| putative lytic enzyme [Xanthomonas campestris pv. campestris] Length = 576 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 5/91 (5%) Query: 90 SRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKL 144 +R P P L G S V +L++ L G D F AV Sbjct: 366 ARQSQPSAPAGNGTLRHGEQSGDVGKLQQDLNRLGVRDAQGNRLAEDGRFGDNTREAVIA 425 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 FQ +HGL P G+V +T A++ Q Sbjct: 426 FQKQHGLQPDGVVGRNTQAALSTQPAQTQSQ 456 >gi|257068140|ref|YP_003154395.1| cell wall-associated hydrolase, invasion-associated protein [Brachybacterium faecium DSM 4810] gi|256558958|gb|ACU84805.1| cell wall-associated hydrolase, invasion-associated protein [Brachybacterium faecium DSM 4810] Length = 280 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 3/70 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + L G+ +VQ L+ L G + F SAVK +Q GL G+V Sbjct: 84 STQKLRWGSRGGAVQELQSALNDHG---AGLAVDGVFGPRTHSAVKSYQSSQGLQVDGVV 140 Query: 158 DSSTLEAMNV 167 T A+N Sbjct: 141 GPKTRAALNG 150 >gi|168180045|ref|ZP_02614709.1| zinc carboxypeptidase family protein [Clostridium botulinum NCTC 2916] gi|226948652|ref|YP_002803743.1| zinc carboxypeptidase family protein [Clostridium botulinum A2 str. Kyoto] gi|182669125|gb|EDT81101.1| zinc carboxypeptidase family protein [Clostridium botulinum NCTC 2916] gi|226842575|gb|ACO85241.1| zinc carboxypeptidase family protein [Clostridium botulinum A2 str. Kyoto] Length = 423 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V++++ L G + F + E AVK FQ+ +GL G++ T Sbjct: 4 LKKGDRGSDVRKIQAVLQKIGY--DVGPIDGIFGSNTEEAVKRFQLNNGLVVDGIIGPKT 61 Query: 162 LEAMN 166 E +N Sbjct: 62 YELLN 66 >gi|148379350|ref|YP_001253891.1| zinc carboxypeptidase family protein [Clostridium botulinum A str. ATCC 3502] gi|153930920|ref|YP_001383725.1| zinc carboxypeptidase family protein [Clostridium botulinum A str. ATCC 19397] gi|153935817|ref|YP_001387274.1| zinc carboxypeptidase family protein [Clostridium botulinum A str. Hall] gi|148288834|emb|CAL82918.1| putative gamma-D-glutamyl-L-diamino acid endopeptidase [Clostridium botulinum A str. ATCC 3502] gi|152926964|gb|ABS32464.1| zinc carboxypeptidase family protein [Clostridium botulinum A str. ATCC 19397] gi|152931731|gb|ABS37230.1| zinc carboxypeptidase family protein [Clostridium botulinum A str. Hall] gi|322805689|emb|CBZ03254.1| gamma-D-glutamyl-L-diamino acid endopeptidase I [Clostridium botulinum H04402 065] Length = 423 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V++++ L G + F + E AVK FQ+ +GL G++ T Sbjct: 4 LKKGDRGSDVRKIQAVLQKIGY--DVGPIDGIFGSNTEEAVKRFQLNNGLVVDGIIGPKT 61 Query: 162 LEAMN 166 E +N Sbjct: 62 YELLN 66 >gi|238765289|ref|ZP_04626217.1| hypothetical protein ykris0001_43380 [Yersinia kristensenii ATCC 33638] gi|238696512|gb|EEP89301.1| hypothetical protein ykris0001_43380 [Yersinia kristensenii ATCC 33638] Length = 355 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 71/208 (34%), Gaps = 47/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L +++N+ L G+ + + +G++ R TP + + +++ + NP W Sbjct: 91 MLLPDTPREGIVINLAELRLYYYPKGQNKVVVYPIGIGQLGRNTPTMTTSVSQKIPNPTW 150 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + I+K YL E G Sbjct: 151 T-PTANIRK----------NYLA------------------------EGITLPSVVPAGP 175 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + + Y +H T F +R +SGC+R+ D+ L K P Sbjct: 176 ENPMGLFAMRLSAGSGEYLIHGTNAN--FGIGMR-VSSGCIRL-RPDDI-EALFKSVPKG 230 Query: 364 SRYHI-----EEVVKTRKTTPVKLATEV 386 +R I + V+ V++ + Sbjct: 231 TRVQIINEPVKYSVEPDGKRYVEVHQPL 258 >gi|66045310|ref|YP_235151.1| ErfK/YbiS/YcfS/YnhG [Pseudomonas syringae pv. syringae B728a] gi|63256017|gb|AAY37113.1| ErfK/YbiS/YcfS/YnhG [Pseudomonas syringae pv. syringae B728a] Length = 321 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 45/176 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ + G+ V + VGR +PI +++ NP Sbjct: 89 RFILPPGPREG-IVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ + Sbjct: 148 TWTPPASIKAE-----------------------------------HAADGDPLPDVVPA 172 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 G N + K + Y +H + + F +R + GC R+ N+++L Sbjct: 173 GPDNPLGPFKFGL--GLSGYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|296392456|ref|YP_003657340.1| cell wall hydrolase/autolysin [Segniliparus rotundus DSM 44985] gi|296179603|gb|ADG96509.1| cell wall hydrolase/autolysin [Segniliparus rotundus DSM 44985] Length = 402 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 21/81 (25%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVA---------------------FDAYVES 140 L G+ V +R L G L S G FDA ++ Sbjct: 4 LRRGDIGPEVVAVRAILEELGFLRSSNGSPDQGAAHDGLTPDASGQEARVEALFDAELDL 63 Query: 141 AVKLFQMRHGLDPSGMVDSST 161 AV+ FQ G+ G++ +T Sbjct: 64 AVRAFQQHRGMLVDGIIGPAT 84 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V L+ RL G + F + + +Q GL P G+ +TL ++ Sbjct: 108 MVGDDVADLQARLHDLGFY--MGLVDGYFGPKTHNGLMSYQREFGLTPDGICGPATLRSL 165 Query: 166 N 166 N Sbjct: 166 N 166 >gi|307945854|ref|ZP_07661190.1| putative bacteriophage-acquired protein [Roseibium sp. TrichSKD4] gi|307771727|gb|EFO30952.1| putative bacteriophage-acquired protein [Roseibium sp. TrichSKD4] Length = 407 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 12/106 (11%) Query: 60 DMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLI 119 ID +I +E T +++ + L LG+ V+RL+ RL Sbjct: 189 PGQIDHYTRLIKREYSRLTRQSLTVRNKARAA---------SLRLGSEGEKVERLQLRLT 239 Query: 120 ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + G F + AV FQ HGL P G+V T +A+ Sbjct: 240 NLNYVLRVDGD---FGPATKRAVVAFQADHGLKPDGIVGQQTQDAL 282 >gi|262403202|ref|ZP_06079762.1| hypothetical protein VOA_001186 [Vibrio sp. RC586] gi|262350701|gb|EEY99834.1| hypothetical protein VOA_001186 [Vibrio sp. RC586] Length = 306 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 65/202 (32%), Gaps = 57/202 (28%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK- 253 +++N+ L N V +GR+ R TP++ + I+ NP W P S+ ++ Sbjct: 95 IVINLAELRLYYFRPNEGKVHIFPVGIGRIGRDTPVMQTSISSKRKNPTWTPPESVRREH 154 Query: 254 ----DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 D++ + G N + Sbjct: 155 KAKGDILPAVV----------------------------------------PAGPDNPLG 174 Query: 310 STKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 + + Y +H T + F +R ++GC+R+ + D+ WL + + I Sbjct: 175 DYAMRLAYGSGEYLIHGTNKD--FGIGMR-VSAGCIRM-DPKDI-EWLFQQVERGEKVRI 229 Query: 369 EEVVKTRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 230 -----INEPIKVALEPDRSVFI 246 >gi|206558510|ref|YP_002229270.1| putative phage-encoded peptidoglycan binding protein [Burkholderia cenocepacia J2315] gi|198034547|emb|CAR50412.1| putative phage-encoded peptidoglycan binding protein [Burkholderia cenocepacia J2315] Length = 283 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 3/93 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ LG+ V L+ RLI +G + ++ +DA E+AV Q + GL G+ Sbjct: 1 MKTRRLGDHGDDVGLLQRRLIRAGY---AVQITHLYDAATEAAVIALQRKTGLVDDGIAG 57 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 T A+ + +L R + L+ + Sbjct: 58 PKTYAALATGLRDPKHLGLADLERAARTLDVPL 90 >gi|326390436|ref|ZP_08211994.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus JW 200] gi|325993554|gb|EGD51988.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus JW 200] Length = 327 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L +G+ V L+ RL G + F+ E AVK +Q GL + Sbjct: 173 PPIEYPTLKIGDKGPFVVNLQARLKSLGF--DPGPIDGIFERKTEEAVKAYQQSRGLPVT 230 Query: 155 GMVDSSTLEAM 165 G+VD+ T A+ Sbjct: 231 GIVDNVTWNAL 241 >gi|229589220|ref|YP_002871339.1| hypothetical protein PFLU1701 [Pseudomonas fluorescens SBW25] gi|229361086|emb|CAY47949.1| conserved hypothetical exported protein [Pseudomonas fluorescens SBW25] Length = 321 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 51/177 (28%), Gaps = 45/177 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ L G+ V + +GR +PI H+ I NP Sbjct: 89 RFILPPGPREG-IVINLAEYRLYYFPKGQNVVYTFPLGIGREGWGSPIAHTSIIAKTPNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ Sbjct: 148 TWTPPASIKAE-----------------------------------HAANGDPLPNVVPA 172 Query: 303 GKINAMASTKIEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 G N + K + H + F R + GC R+ N++++ + Sbjct: 173 GPDNPLGPFKFTLGTPGYLI--HGSNMK--FGIGTRT-SHGCFRMFNNNVLEMAGMV 224 >gi|260775196|ref|ZP_05884094.1| general secretion pathway protein A [Vibrio coralliilyticus ATCC BAA-450] gi|260608897|gb|EEX35059.1| general secretion pathway protein A [Vibrio coralliilyticus ATCC BAA-450] Length = 536 Score = 62.2 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 7/82 (8%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 Y I +G W + L S ++ L +RL L + S +D + V+ Sbjct: 444 QYHQI-WQGYW----HQTLKPNMSGRAIAELDDRLSKV--LGEPERESDVYDQELMRKVE 496 Query: 144 LFQMRHGLDPSGMVDSSTLEAM 165 LFQ GL G+ TL+ + Sbjct: 497 LFQQWQGLHVDGIAGRRTLQRL 518 >gi|325131741|gb|EGC54443.1| ErfK/YbiS/YcfS/YnhG family [Neisseria meningitidis M6190] Length = 207 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 56/171 (32%), Gaps = 45/171 (26%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +GK+ V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGKLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWYIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + G N + + Sbjct: 107 ---------------------RGDGVKTI------------------AAGPDNPLGPVFV 127 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTP 361 +H T P +V + GCVR+++ + + +P Sbjct: 128 RLGDPKLGLGIHGTNAP---ASVPGVRSHGCVRMKSPDALEFAKTIASGSP 175 >gi|326383899|ref|ZP_08205583.1| cell wall hydrolase/autolysin [Gordonia neofelifaecis NRRL B-59395] gi|326197358|gb|EGD54548.1| cell wall hydrolase/autolysin [Gordonia neofelifaecis NRRL B-59395] Length = 383 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 14/105 (13%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV------------AFDAYVESAVKLFQ 146 ++ L LG+ +V +R L G L + FD + AV+ FQ Sbjct: 1 MQVLRLGDHGSAVAEIRAILATRGLLPAAPSTPPSTTHTPWSPPEAVFDQACDRAVRAFQ 60 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 GL G+V +T A+ R+ + L R+ + Sbjct: 61 QERGLIVDGLVGYATYTAL-REASYRLGARIL-LYRLSAPMTGDD 103 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 16/141 (11%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSD-----IPIISKETIAQTEKAIAF 84 P S + + FD R + ++ T +A Sbjct: 27 PAAPSTPPSTTHTPWSPP-EAVFDQACDRAVRAFQQERGLIVDGLVGYATYTALREA--S 83 Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 Y+ + + L + V L+ RL G + F SAV L Sbjct: 84 YRLGA------RILLYRLSAPMTGDDVATLQSRLQNLGYYHG--LVDGVFGEGTHSAVCL 135 Query: 145 FQMRHGLDPSGMVDSSTLEAM 165 +Q +GL G+ STL ++ Sbjct: 136 YQTEYGLSSDGICGPSTLRSL 156 >gi|319408707|emb|CBI82362.1| putative Peptidoglycan-binding domain 1 protein [Bartonella schoenbuchensis R1] Length = 395 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L LG V+ L++RL G + + SA+ FQ H L+ G Sbjct: 214 SVRANGLRLGCKGYRVEALQKRLNDLGY---PVAIDSDYGPNTRSAIFAFQADHNLEVDG 270 Query: 156 MVDSSTLEAMNV 167 +V + T A++V Sbjct: 271 VVGAKTQAALDV 282 >gi|312959750|ref|ZP_07774266.1| ErfK/YbiS/YcfS/YnhG [Pseudomonas fluorescens WH6] gi|311285916|gb|EFQ64481.1| ErfK/YbiS/YcfS/YnhG [Pseudomonas fluorescens WH6] Length = 321 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 51/177 (28%), Gaps = 45/177 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ L G+ V + +GR +PI H+ I NP Sbjct: 89 RFILPPGPREG-IVINLAEYRLYYFPKGQNVVYTFPLGIGREGWGSPIAHTSIIAKTPNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ Sbjct: 148 TWTPPASIKAE-----------------------------------HAANGDPLPNVVPA 172 Query: 303 GKINAMASTKIEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 G N + K + H + F R + GC R+ N++++ + Sbjct: 173 GPDNPLGPFKFTLGTPGYLI--HGSNMK--FGIGTRT-SHGCFRMFNNNVLEMAGMV 224 >gi|307823175|ref|ZP_07653405.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] gi|307735950|gb|EFO06797.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] Length = 470 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 58/212 (27%), Gaps = 66/212 (31%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKV--GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + + +N+ L + V +GR TP+ + I NP W + Sbjct: 146 PDSPHKGIALNLANMRLFYYPKKQPDKVYTYPVGIGRQGWNTPMGQTSIVAKDANPSWNV 205 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SI ++ ++ + + G N Sbjct: 206 PESIHRE-----------------------------------HAEKGDSLPKVVRSGPDN 230 Query: 307 AMAST--KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 + ++ F H T +P + GCV++ P Sbjct: 231 PLGLYAMRLGFP-GYLI--HGTNKPYGIGMQ---ISHGCVQL-------------YPEDI 271 Query: 365 RYHIEEVVKTRKTTPVKLATEVPVHFVYISAW 396 ++ V + + +H Y++AW Sbjct: 272 EVLFKKA-------TVGMPVRI-IHQPYLTAW 295 >gi|186684193|ref|YP_001867389.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186466645|gb|ACC82446.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 361 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 7/132 (5%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP 101 E + + +++ + S +P++ T + IA Q I + Sbjct: 26 EKRQKSWWTKRSKSFSAIEILLLSAMPLLIASTPLVS---IAAPQKIAQINPGDSISRPN 82 Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ V L+ L + G + + + SAV F+ GL+P G+VD+ST Sbjct: 83 LKVGSQGERVSELQAALKLLGFYSGA--VDGIYSENTASAVARFKQAAGLNPDGVVDAST 140 Query: 162 LEAM--NVPVDL 171 + + N PV Sbjct: 141 WQRLFPNQPVAA 152 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G V +L+++L G L F E+AVK Q R+GL+ G+V ST Sbjct: 297 LRIGLRGSEVVKLQQQLKKLGFLKGDADGD--FGETTETAVKAAQKRYGLEADGVVGGST 354 Query: 162 LEAM 165 E + Sbjct: 355 WEVL 358 >gi|255283144|ref|ZP_05347699.1| putative peptidoglycan binding domain protein [Bryantella formatexigens DSM 14469] gi|255266217|gb|EET59422.1| putative peptidoglycan binding domain protein [Bryantella formatexigens DSM 14469] Length = 1954 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 4/71 (5%) Query: 100 RPLHLGN----SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 G+ +S V+++++ L +G G+ + + E+AVK FQ GL G Sbjct: 450 GVFRFGDGLDEASDDVKKIQQALEDAGFTLTQFGVDGKYGSETEAAVKAFQEAEGLLADG 509 Query: 156 MVDSSTLEAMN 166 +V T+ A+N Sbjct: 510 IVGPETIAALN 520 >gi|269213836|ref|ZP_06158207.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria cinerea ATCC 14685] gi|269145157|gb|EEZ71575.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria cinerea ATCC 14685] Length = 338 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 70/232 (30%), Gaps = 71/232 (30%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V +NIP L +G + V VGR QT + +I +NP W IP+SI ++ Sbjct: 47 QHVFINIPQQRLFLYTDGNLTKVYPVAVGRAMTQTNLGEHKIGAKAYNPVWHIPKSIQKE 106 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + G N + + Sbjct: 107 ---------------------RGDGVKTI------------------AAGPDNPLGPVFV 127 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P +V + GCVR+++ L + + Sbjct: 128 RLGDPKLGLGIHGTNTP---ASVPGVRSHGCVRMKSPDAL--------------EFAKTI 170 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKD-SI---IQFRDDIYGLDNVHVGII 420 T V +Y A +D + D YG +N+ + + Sbjct: 171 ATGSPASV----------IYQMAGLNEDAGNNLWLAAFHDPYGKNNLDIASL 212 >gi|304407599|ref|ZP_07389251.1| cell wall hydrolase SleB [Paenibacillus curdlanolyticus YK9] gi|304343550|gb|EFM09392.1| cell wall hydrolase SleB [Paenibacillus curdlanolyticus YK9] Length = 217 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 56/142 (39%), Gaps = 23/142 (16%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + +G+ V L++RL + G L + + + AV+ FQ + +G+V + Sbjct: 33 TMSVGSKGPQVVDLQQRLRMLGYLSSEADGN--YGEGTKDAVQRFQKGAAIAQTGVVGQT 90 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 T+ A+ R + + + + G +Y +G+V + + V+ Sbjct: 91 TMHALKKVTVSRTDLSMLA----RIVYSEARGEQY--------------DGQVAIAA-VV 131 Query: 221 VGRVDRQTPILHSRINRIMFNP 242 + RV + I ++F P Sbjct: 132 LNRVA--SNDFPDTIEEVIFAP 151 >gi|237803632|ref|ZP_04591217.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025614|gb|EGI05670.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 321 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 53/176 (30%), Gaps = 45/176 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ + G+ V + VGR +PI +++ NP Sbjct: 89 RFILPPGPREG-IVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVIAKTPNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ + Sbjct: 148 TWTPPASIKAE-----------------------------------HAADGDPLPDVVPA 172 Query: 303 GKINAMASTKIEF-YSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 G N + K S H + + F +R + GC R+ N+++L Sbjct: 173 GPDNPLGPFKFGLGMSGYLI--HGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|317130360|ref|YP_004096642.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cellulosilyticus DSM 2522] gi|315475308|gb|ADU31911.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cellulosilyticus DSM 2522] Length = 318 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+ +V+ L+E+L G + F E+AV+ FQ GL G+V +T Sbjct: 182 LRLGSRGQAVRDLQEKLTNQGY--HLGSIDGIFGPATENAVRKFQRDRGLTIDGIVGQNT 239 Query: 162 LEAM 165 L+A+ Sbjct: 240 LQAL 243 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L G+ +V+ L+ L G + G+ F E AVK FQ +G+ G Sbjct: 249 TVSSTTLRRGSRGEAVRSLQSDLHSLGY--ETGGIDGIFGPATERAVKSFQRTNGITVDG 306 Query: 156 MVDSSTLEAM 165 +V + TL + Sbjct: 307 IVGNQTLSKL 316 >gi|254785273|ref|YP_003072701.1| peptidoglycan binding domain containing protein [Teredinibacter turnerae T7901] gi|237686178|gb|ACR13442.1| Peptidoglycan binding domain containing protein [Teredinibacter turnerae T7901] Length = 554 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 PE PL +G + ++ L ++ + D PS F+A + VK+FQ HGL+ Sbjct: 471 PEGFSEPLVMGQKNPAIGWLAKQFALL-DERPSPLTDDRFNANLRERVKIFQRTHGLEDD 529 Query: 155 GMVDSSTLEAMN 166 G++ + TL +N Sbjct: 530 GIIGARTLMKVN 541 >gi|242239100|ref|YP_002987281.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech703] gi|242131157|gb|ACS85459.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech703] Length = 327 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 69/208 (33%), Gaps = 47/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L ++VN+ L GK + + +G++ R TP++ +R+ NP W Sbjct: 90 MLLPDTPREGIVVNLAELRLYYFPKGKGTVIVYPIGIGQLGRNTPVMVTRVIERRPNPTW 149 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 + +I + + +D + P G Sbjct: 150 IPTANI-----------------RRHYKE----------QGIDLPAVVPG--------GP 174 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + Y +H T F +R +SGC+R+ D+ L D P Sbjct: 175 DNPMGLFALRLEKSGGVYSIHGTNAN--FGIGMR-VSSGCIRL-RPEDI-EALFNDVPVG 229 Query: 364 SR-----YHIEEVVKTRKTTPVKLATEV 386 +R I+ V+ +++ + Sbjct: 230 TRVQIINEPIKVAVEPDGKRYIEVHQPL 257 >gi|300866027|ref|ZP_07110760.1| hypothetical protein OSCI_2560002 [Oscillatoria sp. PCC 6506] gi|300335971|emb|CBN55918.1| hypothetical protein OSCI_2560002 [Oscillatoria sp. PCC 6506] Length = 333 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G++ V+ L++RL G ++ + + E AV+ FQ+ GL +G+ D+ T Sbjct: 58 IRPGSNGEQVRALQQRLQAQGYFPIGTTPTIYYRSITEEAVRQFQLARGLSATGIADNLT 117 Query: 162 LEAMNVPV 169 L + + Sbjct: 118 LYYLGLGP 125 Score = 43.3 bits (101), Expect = 0.084, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 8/74 (10%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L + +V+ L+ +L + F E AVK FQ R G+ G+ S Sbjct: 247 TLGRNSRGPAVRELQNQLARL--RITPGAIDGVFGNDTEYAVKRFQQRMGIYADGIATPS 304 Query: 161 TLEAM------NVP 168 A+ NVP Sbjct: 305 VQIALRNIIAGNVP 318 Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +V L+++L G + + SAV FQ + L P+G DS+TL A+ Sbjct: 161 DKNVTFLQQKLKALGFF--YGAVDGKYRERTLSAVTRFQQANNLVPTGCADSTTLAAI 216 >gi|294664477|ref|ZP_06729827.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605757|gb|EFF49058.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 565 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L V+ L++ L G D A+ AVK FQ HGL G+V Sbjct: 433 LRDNARGAEVRTLQQTLQQLGYKDAGGNELKADGAYGQRTSDAVKAFQRAHGLQDDGVVG 492 Query: 159 SSTLEAM 165 T A+ Sbjct: 493 RDTQAAL 499 >gi|108807738|ref|YP_651654.1| hypothetical protein YPA_1743 [Yersinia pestis Antiqua] gi|145598053|ref|YP_001162129.1| hypothetical protein YPDSF_0750 [Yersinia pestis Pestoides F] gi|162421439|ref|YP_001606997.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis Angola] gi|165927498|ref|ZP_02223330.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165939524|ref|ZP_02228070.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Orientalis str. IP275] gi|166011816|ref|ZP_02232714.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166210795|ref|ZP_02236830.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167400728|ref|ZP_02306234.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422171|ref|ZP_02313924.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167470494|ref|ZP_02335198.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis FV-1] gi|229837923|ref|ZP_04458082.1| hypothetical protein YPH_0148 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895083|ref|ZP_04510259.1| hypothetical protein YPS_2868 [Yersinia pestis Pestoides A] gi|229898484|ref|ZP_04513629.1| hypothetical protein YPF_2918 [Yersinia pestis biovar Orientalis str. India 195] gi|294503598|ref|YP_003567660.1| hypothetical protein YPZ3_1488 [Yersinia pestis Z176003] gi|108779651|gb|ABG13709.1| hypothetical protein YPA_1743 [Yersinia pestis Antiqua] gi|145209749|gb|ABP39156.1| hypothetical protein YPDSF_0750 [Yersinia pestis Pestoides F] gi|162354254|gb|ABX88202.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis Angola] gi|165912573|gb|EDR31204.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Orientalis str. IP275] gi|165920553|gb|EDR37830.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165989281|gb|EDR41582.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166207975|gb|EDR52455.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166958983|gb|EDR56004.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049581|gb|EDR60989.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|229688032|gb|EEO80103.1| hypothetical protein YPF_2918 [Yersinia pestis biovar Orientalis str. India 195] gi|229694289|gb|EEO84336.1| hypothetical protein YPH_0148 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701845|gb|EEO89868.1| hypothetical protein YPS_2868 [Yersinia pestis Pestoides A] gi|262361640|gb|ACY58361.1| hypothetical protein YPD4_1453 [Yersinia pestis D106004] gi|262365618|gb|ACY62175.1| hypothetical protein YPD8_1492 [Yersinia pestis D182038] gi|294354057|gb|ADE64398.1| hypothetical protein YPZ3_1488 [Yersinia pestis Z176003] Length = 339 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 47/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L +++N+ L G+ + + +G++ R TP + + I++ + NP W Sbjct: 91 MLLPDTPREGIVINLAELRLYYYPKGQNKVIVYPIGIGQLGRDTPTMVTSISQKIPNPTW 150 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + I+K YL E G Sbjct: 151 T-PTANIRK----------NYLA------------------------EGITLPSVVPAGP 175 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + Y +H T F +R +SGC+R+ D+ L P Sbjct: 176 DNPMGQFALRLSAGRGEYLIHGTNAD--FGIGLR-VSSGCIRL-RPDDI-EALFNSVPKG 230 Query: 364 SRYHI-----EEVVKTRKTTPVKLATEV 386 +R I + V+ V++ + Sbjct: 231 TRVQIINEPVKYAVEPDGKRYVEVHQPL 258 >gi|312135357|ref|YP_004002695.1| spore cortex-lytic enzyme [Caldicellulosiruptor owensensis OL] gi|311775408|gb|ADQ04895.1| spore cortex-lytic enzyme [Caldicellulosiruptor owensensis OL] Length = 226 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G++ V ++ RL G D + Y+ AV+ FQ ++GL G+ S TL Sbjct: 40 YGSTGPEVIEIQRRLKQWGYYDGPIDGIYGYKTYM--AVRYFQAKNGLKVDGIAGSETLR 97 Query: 164 AMNV 167 A+ + Sbjct: 98 ALGI 101 >gi|294625068|ref|ZP_06703716.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600653|gb|EFF44742.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 630 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L V+ L++ L G D A+ AVK FQ HGL G+V Sbjct: 433 LRDNARGAEVRTLQQTLQQLGYKDAGGNELKADGAYGQRTSDAVKAFQRAHGLQDDGVVG 492 Query: 159 SSTLEAM 165 T A+ Sbjct: 493 RDTQAAL 499 >gi|308069833|ref|YP_003871438.1| spore cortex-lytic enzyme precursor (Germination-specific amidase) (SCLE) [Paenibacillus polymyxa E681] gi|305859112|gb|ADM70900.1| Spore cortex-lytic enzyme precursor (Germination-specific amidase) (SCLE) [Paenibacillus polymyxa E681] Length = 217 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 50/152 (32%), Gaps = 22/152 (14%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 G + L G S V L+++L G G + + + AV FQ +G Sbjct: 22 APGQAQAQTSALKKGVQSERVLELQQQLHSLGYFK--AGFTAYYGSLTSKAVARFQRDNG 79 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 L P G+ ++T + +R+ L + + + G + + Sbjct: 80 LIPDGVAGAATQAKLESFGKVRVTALD---QLARIIYSEARGESF------EGQVAV--- 127 Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 G V L V G S I ++ P Sbjct: 128 GAVVLN-RVQSG-------EFPSSIPDVILQP 151 >gi|291458271|ref|ZP_06597661.1| putative peptidoglycan binding domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291418804|gb|EFE92523.1| putative peptidoglycan binding domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 570 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + LG S V L++ L G L P + S F + AV FQ R+GL+ GM + T Sbjct: 338 MRLGEQSDEVANLQKLLAKYGYL-PQEKASGYFGELTKQAVADFQSRNGLNADGMAGAQT 396 Query: 162 LEAM 165 L + Sbjct: 397 LAKL 400 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 LG + ++ RL G L + ++ +FDA E+AVK Q +GL G V ST Sbjct: 195 KLGFQGNDITNVQYRLYNLGYLTEASQINGSFDAVTETAVKKMQEVNGLKVDGTVGQST- 253 Query: 163 EAMNVPVDLRIRQLQV 178 + + +++ + + Sbjct: 254 DELLYSDNVKANIIAL 269 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G + V+ L++RL+ G +D + + + AV+ FQ + G+ G+ ST Sbjct: 122 LTVGVINSVVRDLQQRLMDLGYMDVDEP-TTYYGDATSKAVQYFQRQVGMPMDGITGVST 180 Query: 162 LEAM 165 +A+ Sbjct: 181 WDAL 184 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + + LG S V++ + RLI G + S + F ++A++ FQ R+ G Sbjct: 262 VKANIIALGEQSDIVKKYQARLIALGYMSGSADGN--FGQSTQNAIRAFQSRNDQIVDGY 319 Query: 157 VDSSTLEAM 165 + T ++ Sbjct: 320 LGPDTRASL 328 >gi|312127392|ref|YP_003992266.1| spore cortex-lytic enzyme [Caldicellulosiruptor hydrothermalis 108] gi|311777411|gb|ADQ06897.1| spore cortex-lytic enzyme [Caldicellulosiruptor hydrothermalis 108] Length = 226 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%) Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 IA YQ + + + + + G++ V +++RL G D + Y+ A Sbjct: 20 IADYQHLKFKYALSPIVLS--YYGSTGPEVIEIQKRLKQWGYYDGPIDGIYGYKTYM--A 75 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ FQ ++GL G+ S TL A+ + Sbjct: 76 VRYFQAKNGLKVDGIAGSETLRALGI 101 >gi|271969998|ref|YP_003344194.1| hypothetical protein Sros_8817 [Streptosporangium roseum DSM 43021] gi|270513173|gb|ACZ91451.1| hypothetical protein Sros_8817 [Streptosporangium roseum DSM 43021] Length = 276 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 18/138 (13%) Query: 91 RGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 GG P P P LH G+ V++++ RL G + + + AV FQ + Sbjct: 67 SGGVPARPQFPTLHPGDEGALVEKVQSRLDRLGF--KAGPPGSEYGPALRMAVWAFQKAN 124 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 GL VD T +A++ P R++ L+ G V +++ L A + Sbjct: 125 GLPAVDRVDPPTWQALSHP------------ERVRPLVP-SGGSVRVEIDLRRQLLTAWK 171 Query: 210 NGKVGLRSTV--IVGRVD 225 +GK L S + G+ Sbjct: 172 DGKPALISHISTGTGKPY 189 >gi|167037413|ref|YP_001664991.1| SpoIID/LytB domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115826|ref|YP_004185985.1| SpoIID/LytB domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856247|gb|ABY94655.1| SpoIID/LytB domain [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928917|gb|ADV79602.1| SpoIID/LytB domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 762 Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 6/78 (7%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G V+ L+ L G + + + F + AV FQ + L P G+V Sbjct: 117 TRTLKYGMQGNDVKELQNALAKLGYFNTTP--TGYFGSITRDAVIKFQKANNLTPDGIVG 174 Query: 159 SSTLEA----MNVPVDLR 172 T +A +NV + R Sbjct: 175 PLTQKAISEKLNVSLPSR 192 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G V+ L+ L G + + + F + AV FQ + L P G+V Sbjct: 216 TRTLKYGMQGNDVKELQNALAKLGYFNTTP--TGYFGSITRDAVIKFQKANNLTPDGIVG 273 Query: 159 SSTLEAM 165 T +A+ Sbjct: 274 PLTQKAI 280 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P R + G++ V+ L+ L G +K ++ +D +AV FQ + L Sbjct: 303 PSGFSRNMKKGDTGDDVKLLQTLLKEIGYY--TKDITGTYDDNTLNAVMDFQKYYSLAVD 360 Query: 155 GMVDSSTL 162 G+ +T+ Sbjct: 361 GIAGINTI 368 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V+ L++ L +G + + F ++AV Q + L P G+ T Sbjct: 29 LKYGMRSPEVRHLQQNLNKAGYFVTANP-TDYFGPATKNAVMRLQKDYNLVPDGIYGPLT 87 Query: 162 LEAM 165 +A+ Sbjct: 88 EKAL 91 >gi|51892227|ref|YP_074918.1| spore cortex-lytic enzyme precursor [Symbiobacterium thermophilum IAM 14863] gi|51855916|dbj|BAD40074.1| spore cortex-lytic enzyme precursor [Symbiobacterium thermophilum IAM 14863] Length = 224 Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G + +V+ +++RL G + + F E AV+ FQ ++GL G+V Sbjct: 30 TLRRGATGDAVREVQQRLRDWGYYEGQ--VDGRFGPLTEKAVRFFQSKNGLTVDGVVGPE 87 Query: 161 TLEAM 165 T A+ Sbjct: 88 TWAAL 92 >gi|167040080|ref|YP_001663065.1| SpoIID/LytB domain-containing protein [Thermoanaerobacter sp. X514] gi|300914163|ref|ZP_07131479.1| SpoIID/LytB domain protein [Thermoanaerobacter sp. X561] gi|307724601|ref|YP_003904352.1| SpoIID/LytB domain-containing protein [Thermoanaerobacter sp. X513] gi|166854320|gb|ABY92729.1| SpoIID/LytB domain [Thermoanaerobacter sp. X514] gi|300889098|gb|EFK84244.1| SpoIID/LytB domain protein [Thermoanaerobacter sp. X561] gi|307581662|gb|ADN55061.1| SpoIID/LytB domain protein [Thermoanaerobacter sp. X513] Length = 762 Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 6/78 (7%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G V+ L+ L G + + + F + AV FQ + L P G+V Sbjct: 117 TRTLKYGMQGNDVKELQNALAKLGYFNTTP--TGYFGSITRDAVIKFQKANNLTPDGIVG 174 Query: 159 SSTLEA----MNVPVDLR 172 T +A +NV + R Sbjct: 175 PLTQKAISEKLNVSLPSR 192 Score = 54.8 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G V+ L+ L G + + + F + AV FQ + L P G+V Sbjct: 216 TRTLKYGMQGNDVKELQNALAKLGYFNTTP--TGYFGSITRDAVIKFQKANNLTPDGIVG 273 Query: 159 SSTLE 163 T + Sbjct: 274 PLTQK 278 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P R + G++ V+ L+ L G +K ++ +D +AV FQ + L Sbjct: 303 PSGFSRNMKKGDTGDDVKLLQTLLKEIGYY--TKDITGTYDDNTLNAVMDFQKYYSLAVD 360 Query: 155 GMVDSSTL 162 G+ +T+ Sbjct: 361 GIAGINTI 368 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V+ L++ L +G + + F ++AV Q + L P G+ T Sbjct: 29 LKYGMRSPEVRHLQQNLNKAGYFVTANP-TDYFGPATKNAVMRLQKDYNLVPDGIYGPLT 87 Query: 162 LEAM 165 +A+ Sbjct: 88 EKAL 91 >gi|307131455|ref|YP_003883471.1| hypothetical protein Dda3937_03663 [Dickeya dadantii 3937] gi|306528984|gb|ADM98914.1| hypothetical protein Dda3937_03663 [Dickeya dadantii 3937] Length = 332 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 68/211 (32%), Gaps = 48/211 (22%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFN 241 ++ LL ++VN+ L GK + + +G++ R TP++ + + N Sbjct: 88 LQMLLP-DTPREGIVVNLAELRLYYFPKGKNTVIVYPIGIGQLGRNTPVMVTHVIERRPN 146 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W + Y K+ I + V Sbjct: 147 PTW-----------IPTANTRRHY-KEQGITL---------PAMV--------------P 171 Query: 302 PGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 G N M + Y +H T F +R +SGC+R+ D+ L D Sbjct: 172 GGPDNPMGLFALRLEKSGGVYSIHGTNAD--FGIGMR-VSSGCIRL-RPEDI-EALFNDA 226 Query: 361 PTWSR-----YHIEEVVKTRKTTPVKLATEV 386 P +R I+ V+ V++ + Sbjct: 227 PVGTRVQIINEPIKIAVEPDGKRYVEVHQPL 257 >gi|253989393|ref|YP_003040749.1| hypothetical protein PAU_01913 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780843|emb|CAQ84005.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 358 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 72/208 (34%), Gaps = 47/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + +++N+ L GK + + +G++ R TP++ + +++++ +P W Sbjct: 88 MLLPDTPRQGIVINLAELRLYYFPKGKNKVIVYPIGIGQLGRNTPVMTTSVSQLIKDPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P I+K + + I + G Sbjct: 148 T-PTKNIRK-----------HYAEQGITL-----------------------PAVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + Y +H T F +R +SGC+R+ D+ L P Sbjct: 173 ENPMGLFALRLAAGRGEYLIHGTNAD--FGIGMR-VSSGCIRL-RPDDI-EALFNSVPRG 227 Query: 364 SRYHI-----EEVVKTRKTTPVKLATEV 386 +R I + V+ V++ + Sbjct: 228 TRVQIINEAVKYSVEPNGKRYVEVHQPL 255 >gi|39996637|ref|NP_952588.1| general secretion pathway protein-related protein [Geobacter sulfurreducens PCA] gi|39983518|gb|AAR34911.1| general secretion pathway protein-related protein [Geobacter sulfurreducens PCA] gi|298505651|gb|ADI84374.1| peptidoglycan-binding ATPase, putative [Geobacter sulfurreducens KN400] Length = 540 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 4/74 (5%) Query: 94 WPELPIRPLH--LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W PL G+ V+ L+E L +G D FDA E V+ FQ GL Sbjct: 449 WKNFHGIPLRTRAGSRGKGVKPLQELLKGAGFYDEKPTGD--FDAATEEGVRRFQQSEGL 506 Query: 152 DPSGMVDSSTLEAM 165 P G TL + Sbjct: 507 QPDGKAGEKTLALL 520 >gi|269962801|ref|ZP_06177142.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832491|gb|EEZ86609.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 308 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 55/202 (27%) Query: 189 QKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + +++N+ L V V +GR+ R TP + + I++ NP W P Sbjct: 97 PDVPHKGIVINLAELRLYYFPAKENVVHVFPVGIGRIGRDTPEMTTSISQKRPNPTWTPP 156 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI + + A P + G N Sbjct: 157 SSI-RAEYKAKGIDLPAVV----------------------------------PAGPDNP 181 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 + + + Y +H T + F +R ++GC+R+ P + Sbjct: 182 LGMFALRLAYGHGEYLIHGTNKD--FGIGMR-VSAGCIRM-------------DPNDIEW 225 Query: 367 HIEEVVKTRKTTPVKLATEVPV 388 ++V + K + V V Sbjct: 226 LFDKVRRGEKVKIIN--QPVKV 245 >gi|167032930|ref|YP_001668161.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida GB-1] gi|166859418|gb|ABY97825.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida GB-1] Length = 325 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 44/170 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L G+ V + +GR +PI +++I NP W P SI +K+ Sbjct: 100 IVINLAEYRLYYFPKGQNVVHTFPLGIGREGWGSPIANTKITAKTPNPTWTPPASI-RKE 158 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ + G N + K Sbjct: 159 ----------------------------------HAADGDILPAVVPAGPDNPLGPFKFT 184 Query: 315 FYSR-NNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 H + + F +R + GC R+ N+++L + TP Sbjct: 185 LGVPGYLI--HGSNKK--FGIGMRT-SHGCFRMLNNNVLELSKMVPVGTP 229 >gi|88703621|ref|ZP_01101337.1| general secretion pathway protein A [Congregibacter litoralis KT71] gi|88702335|gb|EAQ99438.1| general secretion pathway protein A [Congregibacter litoralis KT71] Length = 560 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%) Query: 100 RPLHLGNSS---VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 R L G+ V L RL D + FD +E+ VKLFQ + GL G+ Sbjct: 471 RTLQRGDRGDDVARVAALFARL----DGQIQPLTEMLFDPRLEARVKLFQQQQGLRADGV 526 Query: 157 VDSSTLEAM 165 + +TL A+ Sbjct: 527 LGENTLRAL 535 >gi|295705154|ref|YP_003598229.1| cell wall endopeptidase [Bacillus megaterium DSM 319] gi|294802813|gb|ADF39879.1| cell wall endopeptidase [Bacillus megaterium DSM 319] Length = 391 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G +V L+++L G S G++ F + SAVK FQ +GL G T Sbjct: 190 LRQGMKGSAVSSLQQKLKNKGYF--SAGVTGYFGSITTSAVKSFQRANGLLVDGEAGPDT 247 Query: 162 LEAMN 166 L +N Sbjct: 248 LNKLN 252 Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 LH G S+ V+ L+++L G + + + SAVK FQ +GL G+ S Sbjct: 29 TLHPGTSNSDVKELQQKLKNKGYFTYG-TTTNYYGSITTSAVKSFQRANGLSADGIAGPS 87 Query: 161 TLE 163 T Sbjct: 88 TFN 90 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +G++ +VQ L+++L G + + F + ++AV FQ +GL G+ +TL Sbjct: 110 RVGSTGPNVQSLQQQLKNKGYFKGT--TTQYFGSITKNAVMAFQRANGLSVDGIAGPATL 167 Query: 163 EAM 165 + Sbjct: 168 SKL 170 >gi|294499766|ref|YP_003563466.1| cell wall endopeptidase [Bacillus megaterium QM B1551] gi|294349703|gb|ADE70032.1| cell wall endopeptidase [Bacillus megaterium QM B1551] Length = 388 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G +V L+++L G S G++ F + SAVK FQ +GL G T Sbjct: 187 LRQGMKGSAVSSLQQKLKNKGYF--SAGVTGYFGSITTSAVKSFQRANGLLVDGEAGPDT 244 Query: 162 LEAMN 166 L +N Sbjct: 245 LNKLN 249 Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 LH G S+ V+ L+++L G + + + SAVK FQ +GL G+ S Sbjct: 29 TLHPGTSNSDVKELQQKLKNKGYFTYG-TTTNYYGSITTSAVKSFQRANGLSADGIAGPS 87 Query: 161 TLE 163 T Sbjct: 88 TFN 90 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +G++ +VQ L+++L G + + F + ++AV FQ +GL G+ +TL Sbjct: 107 RVGSTGPNVQSLQQQLKNKGYFKGT--TTQYFGSITKNAVMAFQRANGLSVDGIAGPATL 164 Query: 163 EAM 165 + Sbjct: 165 SKL 167 >gi|226358219|ref|YP_002787958.1| bifunctional protein, precursor : N-acetylmuramoyl-L-alanine amidase; Muramoylpentapeptide carboxypeptidase [Deinococcus deserti VCD115] gi|226319862|gb|ACO47856.1| putative bifunctional protein, precursor : N-acetylmuramoyl-L-alanine amidase; Muramoylpentapeptide carboxypeptidase [Deinococcus deserti VCD115] Length = 359 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L IR + G+S +VQ + +L G + G F A ESAV+ FQ GL Sbjct: 290 WERL-IRTVRRGDSGPAVQAAQGQLAARGYGVTADG---VFGAGTESAVRSFQSSRGLTS 345 Query: 154 SGMVDSSTLEAM 165 G+V +T A+ Sbjct: 346 DGIVGPNTWHAL 357 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 8/72 (11%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP G + V+ +RL++S S ++ SAV FQ GL P Sbjct: 230 WPTT-----RSGQTGERVRS-AQRLLVSH--GQSLTADGSYGPATASAVSAFQSGAGLTP 281 Query: 154 SGMVDSSTLEAM 165 G++ S+T E + Sbjct: 282 DGVIGSATWERL 293 >gi|323705059|ref|ZP_08116635.1| NLP/P60 protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535485|gb|EGB25260.1| NLP/P60 protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 226 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V L++ L G + G+ F + +SAV Q R+GL P G+V +T Sbjct: 28 LKYGSKGQAVVSLQQTLNRLGY--STGGIDGIFGSKTKSAVIALQRRYGLSPDGIVGPAT 85 Query: 162 LEAMNVP 168 +N Sbjct: 86 EAVLNRT 92 >gi|284048182|ref|YP_003398521.1| NLP/P60 protein [Acidaminococcus fermentans DSM 20731] gi|283952403|gb|ADB47206.1| NLP/P60 protein [Acidaminococcus fermentans DSM 20731] Length = 232 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 G S V ++E+L++ G + A +AVK +Q GL G++ + Sbjct: 24 SFKPGQSGPEVAAIQEQLLMEGY--DIGIPDGVYGARTVAAVKKYQASMGLAADGVIGNF 81 Query: 161 TLEAM 165 T + + Sbjct: 82 TYKKL 86 >gi|262273986|ref|ZP_06051798.1| hypothetical protein VHA_000962 [Grimontia hollisae CIP 101886] gi|262221796|gb|EEY73109.1| hypothetical protein VHA_000962 [Grimontia hollisae CIP 101886] Length = 320 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 64/161 (39%), Gaps = 39/161 (24%) Query: 189 QKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + +++N+ L + + + + +GR+ R TPI+ ++I++ NP W P Sbjct: 91 PDVEYEGIVINLAELRLYYFDTDNRKVHVFPIGIGRIGRDTPIMQTKISQKRENPTWTPP 150 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 S+ +K+ YL++ NI V + V G N Sbjct: 151 ASL-RKE----------YLEERNI---------VLPDVV--------------PAGPDNP 176 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR 347 + + + +Y +H T F +R ++GC+R+R Sbjct: 177 LGTHALRLAYGTGSYLIHGT-NKS-FGIGLR-VSAGCIRMR 214 >gi|90413965|ref|ZP_01221950.1| hypothetical protein P3TCK_07866 [Photobacterium profundum 3TCK] gi|90325027|gb|EAS41542.1| hypothetical protein P3TCK_07866 [Photobacterium profundum 3TCK] Length = 301 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 42/176 (23%) Query: 196 VLVNIPAASLEAV--ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L ++ + + +GRV R TP + +++++ + NP W P + I+K Sbjct: 94 IIINLAELRLYYFPEDDKSIVYIFPIGIGRVGRATPNMITKVSQKIENPTWT-PTANIRK 152 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + Y + +I + G N + + Sbjct: 153 E----------YREKKDIEL-----------------------PAVVPAGPENPLGEYAM 179 Query: 314 EFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 Y +H T + F +R +SGC+R+ N D+ WL P + I Sbjct: 180 RLAYSRGEYLIHGTNKD--FGIGMR-VSSGCIRM-NPWDI-EWLFPQVPRGTSVQI 230 >gi|54302422|ref|YP_132415.1| hypothetical protein PBPRB0743 [Photobacterium profundum SS9] gi|46915844|emb|CAG22615.1| hypothetical protein PBPRB0743 [Photobacterium profundum SS9] Length = 301 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 42/176 (23%) Query: 196 VLVNIPAASLEAV--ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L ++ + + +GRV R TP + +++++ + NP W P + I+K Sbjct: 94 IIINLAELRLYYFPEDDKSIVYIFPIGIGRVGRATPNMITKVSQKIENPTWT-PTANIRK 152 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + Y + +I + G N + + Sbjct: 153 E----------YREKKDIEL-----------------------PAVVPAGPENPLGEYAM 179 Query: 314 EFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 Y +H T + F +R +SGC+R+ N D+ WL P + I Sbjct: 180 RLAYSRGEYLIHGTNKD--FGIGMR-VSSGCIRM-NPWDI-EWLFPQVPRGTSVQI 230 >gi|325291385|ref|YP_004267566.1| spore cortex-lytic enzyme [Syntrophobotulus glycolicus DSM 8271] gi|324966786|gb|ADY57565.1| spore cortex-lytic enzyme [Syntrophobotulus glycolicus DSM 8271] Length = 234 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+S V+ L+++L G + F + E A+K FQ G+ G+ T Sbjct: 39 LKEGSSGQEVKSLQKKLSQLGY--SVGAIDGKFGSATEQALKRFQKNRGIKTDGIFGDET 96 Query: 162 LEAMNV 167 + +N Sbjct: 97 AKELNR 102 >gi|330988430|gb|EGH86533.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 321 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 45/176 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ + G+ V + VGR +PI +++ NP Sbjct: 89 RFILPPGPREG-IVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ + Sbjct: 148 TWTPPASIKAE-----------------------------------HAADGDPLPDVVPA 172 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVW 355 G N + K + Y +H + + F +R + GC R+ N+++L Sbjct: 173 GPDNPLGPFKFGL--GLSGYLIHGSNKK--FGIGMRT-SHGCFRMYNNNVLELADM 223 >gi|300863516|ref|ZP_07108468.1| putative Peptidoglycan-binding domain 1 [Oscillatoria sp. PCC 6506] gi|300338472|emb|CBN53610.1| putative Peptidoglycan-binding domain 1 [Oscillatoria sp. PCC 6506] Length = 224 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 6/82 (7%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 FYQ + P + + G V +++RL G + F + SAV Sbjct: 66 FYQGLQE----PPKKEKTVSKGAKGAEVAAIQKRLQAHGF--NVGAIDSDFGSRTVSAVS 119 Query: 144 LFQMRHGLDPSGMVDSSTLEAM 165 FQ GL G+VD +T +A+ Sbjct: 120 AFQQSKGLKADGIVDRTTWDAL 141 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 17/116 (14%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGW------------PELP--IRPLHLGNSSV 109 D +S + Q K + I+ R W ++P + L G + Sbjct: 109 DFGSRTVSAVSAFQQSKGLKA-DGIVDRTTWDALKDEPMVLAQKQIPESSKVLAKGAAGS 167 Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V+ L+ RL + G + F A +AVK FQ + L G VD +T +A+ Sbjct: 168 KVKTLQVRLEMQGY--DPGPIDGIFGARTLTAVKDFQATNNLKVDGTVDEATWKAL 221 >gi|261380022|ref|ZP_05984595.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria subflava NJ9703] gi|284797229|gb|EFC52576.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria subflava NJ9703] Length = 368 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 70/232 (30%), Gaps = 71/232 (30%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V++NI L +NGK+ V VG+ QT + +I +NP W IP+SI ++ Sbjct: 48 QHVVINITQQRLFLYDNGKLSKIYPVAVGKAMTQTNLGEHKIGAKAYNPVWHIPKSIQKE 107 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + G N + + Sbjct: 108 ---------------------RNDGVKSVP------------------AGPNNPLGPVFV 128 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 + +H T P +V + GCVR+++ L + + Sbjct: 129 RLGDPKLSLGIHGTNAP---ASVPGVRSHGCVRMKSPDAL--------------EFAKTI 171 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF----RDDIYGLDNVHVGII 420 T V +Y A +D+ D Y N+ + Sbjct: 172 ATGSPASV----------IYQMASLNEDANQNLWLAAYRDPYDKKNLDTAAL 213 >gi|312793773|ref|YP_004026696.1| spore cortex-lytic enzyme [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180913|gb|ADQ41083.1| spore cortex-lytic enzyme [Caldicellulosiruptor kristjanssonii 177R1B] Length = 225 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G++ V +++RL G D + Y+ AV+ FQ ++GL G+ S TL Sbjct: 40 YGSTGPEVIEIQKRLKQWGYYDGPIDGIYGYKTYM--AVRYFQAKNGLKVDGIAGSETLR 97 Query: 164 AMNV 167 A+ + Sbjct: 98 ALGI 101 >gi|15616210|ref|NP_244515.1| hypothetical protein BH3648 [Bacillus halodurans C-125] gi|10176272|dbj|BAB07367.1| BH3648 [Bacillus halodurans C-125] Length = 1113 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 PL LG V +L+ L G S + F + V+ FQ GL G+V Sbjct: 248 TGPLRLGMYREDVIQLKINLEKVGF-PVSSNPNTYFGPTTDRQVRAFQQSQGLTADGIVG 306 Query: 159 SSTLEAM 165 SST++A+ Sbjct: 307 SSTIKAL 313 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 10/94 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 PL +G L+E+L G + S + + E+ VK FQ HGL +G+ D Sbjct: 460 TGPLKMGMYREDAITLKEQLAALGYV-ISNNPTNYYGPSTEATVKQFQKDHGLQVNGIAD 518 Query: 159 SSTLEA----MNVPV-----DLRIRQLQVNLMRI 183 S TL+ +N + + ++ +L++ L R+ Sbjct: 519 SLTLKKIQELLNQTLYFGVRNDKVVELKLELERL 552 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L RPL LG V +L++ L +G S + F + +K FQ H L +G Sbjct: 664 ALATRPLQLGMYHPDVVQLKKDLAKAGYFV-SNNPNDYFGPTTTTKLKEFQTDHNLPATG 722 Query: 156 MVDSSTLE 163 + D TL Sbjct: 723 IADRQTLN 730 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 25/146 (17%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTE 79 L + L V P+ ++ N + + + F + D I+ TI E Sbjct: 263 LKINLEKVGFPVSSNP-----NTYFGPTTDRQVRAFQQSQGLTADG---IVGSSTIKALE 314 Query: 80 KAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 +A+ L LG V L++ L G S + F E Sbjct: 315 EAL----------------SGVLFLGVRDSKVIDLKKMLADLGY-GVSDNPTTYFGPVTE 357 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAM 165 VK FQ G +G+VD +T E + Sbjct: 358 EQVKRFQNDFGRPVTGVVDRATFEFI 383 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G + V +L+E L I G S + F + E+ V+ +Q +GL +G+V Sbjct: 393 LRSGMNHPEVLKLKEYLAILGY-RVSNTPNDFFGSVTEAKVREYQYDNGLQQTGIVTKQL 451 Query: 162 LEAM 165 L + Sbjct: 452 LTEL 455 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + + L+E L I G S + + A V+ FQ ++GL +G+ D T++ Sbjct: 603 GMRASGIITLKEHLAILGF-RVSDNPTTLYGAVTTEQVRQFQQKYGLSSTGIADQKTVDQ 661 Query: 165 M 165 + Sbjct: 662 L 662 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 10/89 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +G+ + ++ L I G S + + E V+ FQ ++ L +G VD T Sbjct: 181 FQVGDRDPEIITIKLHLEILGF-KVSNNPTSYYGIQTEEMVRAFQSQYQLPVTGKVDQET 239 Query: 162 LEAMNV--PVDLRIR-------QLQVNLM 181 ++ LR+ QL++NL Sbjct: 240 RNLLSQRATGPLRLGMYREDVIQLKINLE 268 Score = 39.0 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L+ G + V L+ L G L S + F + E V+ F+ R L +G+V+ Sbjct: 531 QTLYFGVRNDKVVELKLELERLG-LSVSSSPTTYFGSVTEEMVREFKRRANLPVTGVVND 589 Query: 160 STLEAM 165 L+ M Sbjct: 590 EQLKFM 595 Score = 38.3 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLS--VAFDAYVESAVKLFQMRHGLDPSGMV 157 L LG +V L++ L L+ S FD +E + Q +PSG V Sbjct: 42 TLKLGVDHQNVLVLKQVLYSLEYLESDDPESFTTYFDPDLEQVIVDLQEMFQFEPSGEV 100 >gi|149181183|ref|ZP_01859682.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus sp. SG-1] gi|148851082|gb|EDL65233.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus sp. SG-1] Length = 347 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 10/143 (6%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIIS-KETIAQTEKAIAFY---- 85 HA ++D+ IV + R D + IS +E + A Y Sbjct: 119 YHAYLIDKYGVNPREDIVAHSTLDPSRRTDPQNALNRYGISWEEFLEDVNNAYRTYFTNE 178 Query: 86 --QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 +RGG L + PL G+ V+ ++ +L+ +G P G F E AV Sbjct: 179 ETSQPAARGG--SLSL-PLGEGDQGALVREIQTKLVKAGFSLPRYGADGIFGQETEMAVM 235 Query: 144 LFQMRHGLDPSGMVDSSTLEAMN 166 FQ ++GL G+V TL +N Sbjct: 236 RFQRKYGLRVDGLVGMQTLGKLN 258 Score = 44.1 bits (103), Expect = 0.040, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPS 154 LP L G+ V++L+ L + DP + + F A++ FQ + L Sbjct: 271 PLPGGILQEGDEGNGVRQLQRALKQI-NFDPGE-IDGIFGPKTMDAIRRFQETYAELKND 328 Query: 155 GMVDSSTLEAM 165 G+ +T + + Sbjct: 329 GIYGPNTRKYI 339 >gi|289663317|ref|ZP_06484898.1| hypothetical protein XcampvN_09602 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 255 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGM 156 L G SV++L+ +L G F + AV+ FQ HGL G+ Sbjct: 32 GKLEQGERGESVKQLQGQLAQLGYHGRDGKPLHPDGDFGGNTKHAVEQFQREHGLQVDGV 91 Query: 157 VDSSTLEAM 165 V T A+ Sbjct: 92 VGRQTQAAL 100 >gi|325924927|ref|ZP_08186357.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas perforans 91-118] gi|325544664|gb|EGD16017.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas perforans 91-118] Length = 301 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 18/152 (11%) Query: 21 PMGLSLVEKP--IHASVLDEIINESYHSIVNDRFDNFLAR--VDMGIDSDIPIISKETIA 76 G S +KP + + + E+ + + + + I + +A Sbjct: 146 DTGKSYYDKPGGSNHASITSAETENALNAMRQSYRQAIESGVAPEQAWKQINSQPPQQLA 205 Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVA 133 QT++ +D G L G V++L+ +L G + Sbjct: 206 QTQQ---HKRDAAKDG--------KLEQGERGEQVKQLQGQLAQLGAVGRDGKPLHADGD 254 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F + AV+ FQ HGL G+ T A+ Sbjct: 255 FGGNTKHAVEQFQREHGLQIDGIAGQQTQAAL 286 >gi|22125832|ref|NP_669255.1| hypothetical protein y1940 [Yersinia pestis KIM 10] gi|51596632|ref|YP_070823.1| hypothetical protein YPTB2308 [Yersinia pseudotuberculosis IP 32953] gi|108812015|ref|YP_647782.1| hypothetical protein YPN_1853 [Yersinia pestis Nepal516] gi|153948284|ref|YP_001400722.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pseudotuberculosis IP 31758] gi|167424834|ref|ZP_02316587.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024092|ref|YP_001720597.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pseudotuberculosis YPIII] gi|186895688|ref|YP_001872800.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pseudotuberculosis PB1/+] gi|229902327|ref|ZP_04517447.1| hypothetical protein YP516_2061 [Yersinia pestis Nepal516] gi|270490494|ref|ZP_06207568.1| ErfK/YbiS/YcfS/YnhG [Yersinia pestis KIM D27] gi|21958762|gb|AAM85506.1|AE013797_1 hypothetical protein y1940 [Yersinia pestis KIM 10] gi|51589914|emb|CAH21546.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP 32953] gi|108775663|gb|ABG18182.1| hypothetical protein YPN_1853 [Yersinia pestis Nepal516] gi|152959779|gb|ABS47240.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pseudotuberculosis IP 31758] gi|167056021|gb|EDR65799.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750626|gb|ACA68144.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pseudotuberculosis YPIII] gi|186698714|gb|ACC89343.1| ErfK/YbiS/YcfS/YnhG family protein [Yersinia pseudotuberculosis PB1/+] gi|229680662|gb|EEO76758.1| hypothetical protein YP516_2061 [Yersinia pestis Nepal516] gi|270338998|gb|EFA49775.1| ErfK/YbiS/YcfS/YnhG [Yersinia pestis KIM D27] gi|320015053|gb|ADV98624.1| hypothetical protein YPC_2032 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 354 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 47/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L +++N+ L G+ + + +G++ R TP + + I++ + NP W Sbjct: 91 MLLPDTPREGIVINLAELRLYYYPKGQNKVIVYPIGIGQLGRDTPTMVTSISQKIPNPTW 150 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + I+K YL E G Sbjct: 151 T-PTANIRK----------NYLA------------------------EGITLPSVVPAGP 175 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + Y +H T F +R +SGC+R+ D+ L P Sbjct: 176 DNPMGQFALRLSAGRGEYLIHGTNAD--FGIGLR-VSSGCIRL-RPDDI-EALFNSVPKG 230 Query: 364 SRYHI-----EEVVKTRKTTPVKLATEV 386 +R I + V+ V++ + Sbjct: 231 TRVQIINEPVKYAVEPDGKRYVEVHQPL 258 >gi|251796689|ref|YP_003011420.1| cell wall hydrolase SleB [Paenibacillus sp. JDR-2] gi|247544315|gb|ACT01334.1| cell wall hydrolase SleB [Paenibacillus sp. JDR-2] Length = 221 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 9/97 (9%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V L+ RL G D + ++ + E AV+ FQ +GL G+ + Sbjct: 36 TLSYGSYGPDVPDLQFRLKTLGYFDNTA-ITTFYGKMTEEAVRKFQADYGLKSDGVAEEK 94 Query: 161 TLEAM-NVPVDLR-IRQLQVNLMRIKKLLEQKMGLRY 195 T + V + + + L + + + G Y Sbjct: 95 TWTQLKKVSANQKELDLLA------RIIYAEARGESY 125 >gi|304397642|ref|ZP_07379519.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. aB] gi|304354814|gb|EFM19184.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. aB] Length = 341 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 65/205 (31%), Gaps = 47/205 (22%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKV-GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 ++VN+ L G+ + + +G++ TP++ ++I++ + NP W Sbjct: 93 PDTPREGIVVNLAELRLYYYPKGEDKVIVYPIGIGQLGAATPVMVTQISQKIPNPTWTPT 152 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 +I ++ I + G N Sbjct: 153 PNIRKR------------YAKEGITL-----------------------PGVVPAGPDNP 177 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 M + Y +H T F +R +SGC+R+R + L P +R Sbjct: 178 MGQFAMRLARGTGQYLIHGTNAK--FGIGMR-VSSGCIRLR--SEDIEALFNAAPKGTRV 232 Query: 367 HI-----EEVVKTRKTTPVKLATEV 386 I + V+ V++ + Sbjct: 233 QIINQPVKYAVEPDGKRYVEVHQPL 257 >gi|149377350|ref|ZP_01895095.1| putative ErfK/YbiS/YcfS/YnhG family protein [Marinobacter algicola DG893] gi|149358362|gb|EDM46839.1| putative ErfK/YbiS/YcfS/YnhG family protein [Marinobacter algicola DG893] Length = 355 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 52/197 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI----- 250 +++N+ L GKV + V VG D +P+ ++++ + +P W P SI Sbjct: 122 IIINLAEYRLYYFTEGKVQV-YPVGVGTDDNPSPLTNAKVTMPLESPAWYPPASIRAEYE 180 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 + + + PG N + S Sbjct: 181 AAGEYLPRMI----------------------------------------PPGPGNPLGS 200 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYHI 368 + S +H T LF + + GC R+ +I + K TP Sbjct: 201 HALML-SEKGYLIHGTN--KLFGVGM-QVSHGCFRMYNEDISRFVYEVSKGTPVQVIREP 256 Query: 369 EEVVKTRKTTPVKLATE 385 ++ +++ Sbjct: 257 VKIGLKGNEVWLEVHRP 273 >gi|284993429|ref|YP_003411984.1| cell wall hydrolase/autolysin [Geodermatophilus obscurus DSM 43160] gi|284066675|gb|ADB77613.1| cell wall hydrolase/autolysin [Geodermatophilus obscurus DSM 43160] Length = 383 Score = 61.4 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 6/74 (8%) Query: 98 PIRPLHLGNSSVSVQ----RLRER--LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 ++PL G+ +V LR L +G + + A+D E AV+ FQ GL Sbjct: 6 SMQPLGPGDRGHAVADVHAALRALTLLPAAGSAEEASLDEAAYDPATELAVRHFQQVRGL 65 Query: 152 DPSGMVDSSTLEAM 165 G V T A+ Sbjct: 66 TVDGRVGEETYRAL 79 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 3/65 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 P+ V L++RL G + + F E+ ++ FQ +GL G + Sbjct: 95 PVRP-MRGDDVTNLQDRLHELGY--DAGPVDGVFGPETEAGLRAFQRDYGLTSDGTCGPA 151 Query: 161 TLEAM 165 TL A+ Sbjct: 152 TLRAL 156 >gi|113475624|ref|YP_721685.1| peptidoglycan binding domain-containing protein [Trichodesmium erythraeum IMS101] gi|110166672|gb|ABG51212.1| Peptidoglycan-binding domain 1 [Trichodesmium erythraeum IMS101] Length = 487 Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Query: 96 ELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +P+ R L LGN+ + V+RL++RL G + ++ FD E+AV FQ R+ + P+ Sbjct: 259 TIPVERVLRLGNTGLDVRRLQQRLRSLGYY--QRQITNYFDLSTETAVIDFQKRNRITPT 316 Query: 155 GMVDSSTLEAM 165 G+V +T + Sbjct: 317 GIVGQTTKAFL 327 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 22/104 (21%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + L G + V ++ +L G ++ +D +AV FQ +G+ P+G V Sbjct: 189 STKVLSFGEVNPQVAIIQRQLAELGFYKGQ--INSIYDQKTRTAVIQFQNVYGITPTGQV 246 Query: 158 DSSTLEAM---------------NVPVDLRIRQLQVNLMRIKKL 186 +T E + N +D+R Q R++ L Sbjct: 247 GYTTREFLFETRTIPVERVLRLGNTGLDVRRLQ-----QRLRSL 285 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ S V ++ L G + L+ + E AVK FQ GL P+G ++ +T Sbjct: 111 LRCGDFSEIVAEVQRELRELGYF--TANLTGYYGQETEIAVKQFQQEKGLKPTGEIEPTT 168 Query: 162 LEAM 165 + Sbjct: 169 --WL 170 Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L GN +V++L+ L G + F E AV+ FQ GL +G+ T Sbjct: 357 LKPGNEGWAVEQLQILLTRLGYYSGV--IDGFFGLRTEFAVRSFQQDLGLVDTGVATIDT 414 Query: 162 LEAM 165 L+A+ Sbjct: 415 LQAL 418 >gi|291447641|ref|ZP_06587031.1| Muramoyl-pentapeptide carboxypeptidase [Streptomyces roseosporus NRRL 15998] gi|291350588|gb|EFE77492.1| Muramoyl-pentapeptide carboxypeptidase [Streptomyces roseosporus NRRL 15998] Length = 245 Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G + V +L+ R+ + + ++ +AVK FQ +GL G+ Sbjct: 39 TRTLKAGATGNDVTQLQVRVAGYPGYNAVLAIDGSYGPATTAAVKRFQAAYGLAADGVAG 98 Query: 159 SSTLEAM 165 +T + Sbjct: 99 PATQAKL 105 >gi|257876689|ref|ZP_05656342.1| carboxyl-terminal protease [Enterococcus casseliflavus EC20] gi|257810855|gb|EEV39675.1| carboxyl-terminal protease [Enterococcus casseliflavus EC20] Length = 476 Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 94 WPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 +P LP L G SS +V L + L G F+ +AVK FQ H L Sbjct: 383 FPPLPRDNALKAGQSSTAVNNLNQFLEALGY----TTSGDTFNDETTAAVKAFQEDHDLK 438 Query: 153 PSGMVDSSTLEAMNVPVDLRIR 174 +G VD+ T +A+ V +++ Sbjct: 439 ATGEVDADTAQAIEKEVAEKLK 460 >gi|239944169|ref|ZP_04696106.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces roseosporus NRRL 15998] gi|239990625|ref|ZP_04711289.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces roseosporus NRRL 11379] Length = 223 Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G + V +L+ R+ + + ++ +AVK FQ +GL G+ Sbjct: 17 TRTLKAGATGNDVTQLQVRVAGYPGYNAVLAIDGSYGPATTAAVKRFQAAYGLAADGVAG 76 Query: 159 SSTLEAM 165 +T + Sbjct: 77 PATQAKL 83 >gi|146307579|ref|YP_001188044.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas mendocina ymp] gi|145575780|gb|ABP85312.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas mendocina ymp] Length = 318 Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 46/171 (26%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ + G+ V + +GR +P+ R+ NP W P+SI +++ Sbjct: 100 IVINLAEYRMYYFPKGQNVVHTYPLGIGREGWGSPLGTGRVTVKTPNPAWYPPKSI-REE 158 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ E PG N + K+ Sbjct: 159 ----------------------------------HAAEGDILPTVVPPGPDNPLGPYKMT 184 Query: 315 --FYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 F H + + F +R + GC R+ N+++L + TP Sbjct: 185 LSFP-GYLI--HGSNKK--FGIGMR-VSHGCFRMLNHNVLELAAMVPVGTP 229 >gi|261420639|ref|YP_003254321.1| NLP/P60 protein [Geobacillus sp. Y412MC61] gi|319768309|ref|YP_004133810.1| NLP/P60 protein [Geobacillus sp. Y412MC52] gi|261377096|gb|ACX79839.1| NLP/P60 protein [Geobacillus sp. Y412MC61] gi|317113175|gb|ADU95667.1| NLP/P60 protein [Geobacillus sp. Y412MC52] Length = 450 Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ +V L+ RL G ++ + A AVK FQ +GL +G D + Sbjct: 98 TLAIGSRGAAVSDLQRRLKQLGYF-RYPQITGYYGAVTADAVKQFQQANGLPATGRADRA 156 Query: 161 TLEAM 165 TLE + Sbjct: 157 TLERL 161 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G SS + ++++RL G K F A E AVK FQ L +G+VD +T Sbjct: 29 KKGMSSPEITQIQQRLKEQGFFTYPKATG-YFGAITEEAVKAFQRAMNLPATGIVDDATY 87 Query: 163 EAMNVPVD 170 + P Sbjct: 88 AKLKKPAS 95 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ V++L+++L G S ++ + AV+ FQ +GL +G VD+ Sbjct: 175 TLTIGSRGDDVRKLQQQLKQLGYFTYSD-ITGYYGVLTADAVRRFQRDNGLPVTGAVDNQ 233 Query: 161 TLEAM 165 T + Sbjct: 234 TAARL 238 Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 8/97 (8%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G V+R++ +L G ++ + A AV+ FQ L +G+VD T Sbjct: 261 LSIGALGDDVKRIQTKLKELGYF--WTAITGYYGAATADAVRRFQQAAQLPATGIVDGET 318 Query: 162 LEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 E + ++ +++ + +G YV Sbjct: 319 YERLIGQAPAAKLDVIELVAD-----AAELLGTPYVW 350 >gi|308186671|ref|YP_003930802.1| Protein erfK/srfK precursor [Pantoea vagans C9-1] gi|308057181|gb|ADO09353.1| Protein erfK/srfK precursor [Pantoea vagans C9-1] Length = 341 Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 65/205 (31%), Gaps = 47/205 (22%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKV-GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 ++VN+ L G+ + + +G++ TP++ ++I++ + NP W Sbjct: 93 PDTPREGIVVNLAELRLYYYPKGEDKVIVYPIGIGQLGAATPVMVTQISQKIPNPTWTPT 152 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 +I ++ I + G N Sbjct: 153 PNIRKR------------YAKEGITL-----------------------PGVVPAGPDNP 177 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 M + Y +H T F +R +SGC+R+R + L P +R Sbjct: 178 MGQFAMRLARGTGQYLIHGTNAK--FGIGMR-VSSGCIRLR--SEDIEALFNAAPKGTRV 232 Query: 367 HI-----EEVVKTRKTTPVKLATEV 386 I + V+ V++ + Sbjct: 233 QIINQPVKYAVEPDGKRYVEVHQPL 257 >gi|119484927|ref|ZP_01619409.1| hypothetical protein L8106_15680 [Lyngbya sp. PCC 8106] gi|119457745|gb|EAW38869.1| hypothetical protein L8106_15680 [Lyngbya sp. PCC 8106] Length = 159 Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V RL+ RL D + + ++ F + E AVK FQ R GL G+V T Sbjct: 94 LSFGSVGNDVIRLQNRLN---DFEINLLVNGIFASKTEGAVKQFQRRFGLTADGIVGPFT 150 Query: 162 LEAM 165 A+ Sbjct: 151 WNAL 154 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ +++ L+ERL I G + F E+ VK FQ + L G+V S T Sbjct: 18 RRGSQGKTIKNLQERLSILGY---KLLIDEVFGMATEAMVKQFQRENRLLVDGIVGSETW 74 Query: 163 EAM 165 + Sbjct: 75 NTL 77 >gi|54307653|ref|YP_128673.1| putative general secretion pathway protein A [Photobacterium profundum SS9] gi|46912076|emb|CAG18871.1| putative general secretion pathway protein A [Photobacterium profundum SS9] Length = 556 Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 6/78 (7%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + G V L ++L L ++ S FD V ++ FQ L Sbjct: 472 PHGSKTTIRYGQQGPRVAWLNQQLNA--FLGVTQTRSDYFDQSVLEKLRRFQRSQDLAAD 529 Query: 155 GMVDSSTL----EAMNVP 168 G+ TL A+N+P Sbjct: 530 GIAGPLTLMVLDSALNLP 547 >gi|325918977|ref|ZP_08181044.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas vesicatoria ATCC 35937] gi|325534822|gb|EGD06751.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas vesicatoria ATCC 35937] Length = 644 Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 3/71 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPS 154 L V++L++ L G D A+ AVK FQ HGL Sbjct: 441 TSGVLREKAHGAEVEKLQQTLQQLGYKDANGNELKADSAYGQRTGEAVKAFQRAHGLQDD 500 Query: 155 GMVDSSTLEAM 165 G+V TL+A+ Sbjct: 501 GIVGVDTLKAL 511 >gi|257867798|ref|ZP_05647451.1| carboxyl-terminal protease [Enterococcus casseliflavus EC30] gi|257874125|ref|ZP_05653778.1| carboxyl-terminal protease [Enterococcus casseliflavus EC10] gi|257801881|gb|EEV30784.1| carboxyl-terminal protease [Enterococcus casseliflavus EC30] gi|257808289|gb|EEV37111.1| carboxyl-terminal protease [Enterococcus casseliflavus EC10] Length = 476 Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 94 WPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 +P LP L G SS +V L + L G F+ +AVK FQ H L Sbjct: 383 FPPLPRDNALKAGQSSTAVNNLNQFLKALGY----ATSGDTFNDETTAAVKAFQEAHNLK 438 Query: 153 PSGMVDSSTLEAMNVPVDLRIR 174 +G VD+ T +A+ V +++ Sbjct: 439 ATGEVDADTAQAIEKEVAEKLK 460 >gi|126665585|ref|ZP_01736567.1| hypothetical protein MELB17_23370 [Marinobacter sp. ELB17] gi|126630213|gb|EBA00829.1| hypothetical protein MELB17_23370 [Marinobacter sp. ELB17] Length = 336 Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 56/185 (30%), Gaps = 52/185 (28%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + + +++N+ L + V + V VG + +P+ ++++ + +P Sbjct: 97 RHYVMPDAKREGIVINLAEYRLYYFTDSGVQV-YPVGVGTEENPSPLTNAQVTMALTSPA 155 Query: 244 WVIPRSI-----IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF 298 W P SI D + + Sbjct: 156 WYPPESIRAEHAAVGDFLPRMI-------------------------------------- 177 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 PG N + S + S +H T + F + + GC R+ +I + Sbjct: 178 --PPGPDNPLGSHALIL-SEKGYLIHGTNKK--FGVGM-AVSHGCFRMYNEDISRFAYQI 231 Query: 357 LKDTP 361 + TP Sbjct: 232 AQGTP 236 >gi|187779972|ref|ZP_02996445.1| hypothetical protein CLOSPO_03568 [Clostridium sporogenes ATCC 15579] gi|187773597|gb|EDU37399.1| hypothetical protein CLOSPO_03568 [Clostridium sporogenes ATCC 15579] Length = 423 Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +R L G+ V++++ L G + F + E AVK FQ+ + L G++ Sbjct: 1 MRVLKKGDRGSDVKKIQAVLQKIGY--DVGPIDGIFGSKTEEAVKRFQLNNRLAVDGIIG 58 Query: 159 SSTLEAMN 166 T E +N Sbjct: 59 PKTYEVLN 66 >gi|168184305|ref|ZP_02618969.1| zinc carboxypeptidase family protein [Clostridium botulinum Bf] gi|237794727|ref|YP_002862279.1| zinc carboxypeptidase family protein [Clostridium botulinum Ba4 str. 657] gi|182672655|gb|EDT84616.1| zinc carboxypeptidase family protein [Clostridium botulinum Bf] gi|229260492|gb|ACQ51525.1| zinc carboxypeptidase family protein [Clostridium botulinum Ba4 str. 657] Length = 423 Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V++++ L G + F + E AVK FQ+ +GL G++ T Sbjct: 4 LKKGDRGSDVRKIQAVLQKIGY--DVGLIDGIFGSKTEEAVKRFQLNNGLVVDGIIGPKT 61 Query: 162 LEAMN 166 E +N Sbjct: 62 YEILN 66 >gi|325915197|ref|ZP_08177520.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas vesicatoria ATCC 35937] gi|325538557|gb|EGD10230.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas vesicatoria ATCC 35937] Length = 341 Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 3/70 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G VQ L++ L G D F AV FQ +HGL G+V Sbjct: 149 LKRGIRGDEVQSLQQDLNRLGVRDTQGNRLAEDGRFGDNTREAVMAFQKQHGLQQDGVVG 208 Query: 159 SSTLEAMNVP 168 T A++ P Sbjct: 209 RDTRAALSAP 218 >gi|241759332|ref|ZP_04757438.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria flavescens SK114] gi|241320468|gb|EER56765.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria flavescens SK114] Length = 353 Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 70/232 (30%), Gaps = 71/232 (30%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V++NI L +NGK+ V VG+ QT + +I +NP W IP+SI ++ Sbjct: 33 QHVVINITQQRLFLYDNGKLSKIYPVAVGKAMTQTNLGEHKIGAKAYNPVWHIPKSIQKE 92 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + G N + + Sbjct: 93 ---------------------RNDGVKSVP------------------AGPNNPLGPVFV 113 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 + +H T P +V + GCVR+++ L + + Sbjct: 114 RLGDPKLSLGIHGTNAP---ASVPGVRSHGCVRMKSPDAL--------------EFAKTI 156 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF----RDDIYGLDNVHVGII 420 T V +Y A +D+ D Y N+ + Sbjct: 157 ATGSPASV----------IYQMASLNEDANQNLWLAAYRDPYDKKNLDTAAL 198 >gi|288941087|ref|YP_003443327.1| peptidoglycan-binding domain-containing protein [Allochromatium vinosum DSM 180] gi|288896459|gb|ADC62295.1| Peptidoglycan-binding domain 1 protein [Allochromatium vinosum DSM 180] Length = 604 Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 2/74 (2%) Query: 94 WPELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + G V+ LR+ + L G + +D +ESA++ FQ GL Sbjct: 505 WQLPPGGSTLIRPGAVGEEVRWLRDLVSRVPGLASLPGPADRYDVTLESALRAFQASKGL 564 Query: 152 DPSGMVDSSTLEAM 165 G+ T A+ Sbjct: 565 TADGVAGPRTFIAL 578 >gi|300722818|ref|YP_003712110.1| hypothetical protein XNC1_1866 [Xenorhabdus nematophila ATCC 19061] gi|297629327|emb|CBJ89926.1| putative enzyme with LysM domain [Xenorhabdus nematophila ATCC 19061] Length = 318 Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 73/206 (35%), Gaps = 43/206 (20%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + +++N+ L G + + +G++ R TP + + +++++ +P W Sbjct: 93 MLLPDTPRQGIIINLAELRLYYYPKGANHVIVYPIGIGQLGRNTPTMTTSVSQLIGSPTW 152 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + I+KD + P + PG Sbjct: 153 T-PTANIRKDYASRGIILPAVI----------------------------------PPGP 177 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL-LKDT 360 N M + + Y +H T F +R +SGC+R+ +I DL + LK Sbjct: 178 DNPMGDFALRLAAGRGEYLIHGTNAN--FGIGMR-VSSGCIRLRPDDIRDLFSTVPLKTR 234 Query: 361 PTWSRYHIEEVVKTRKTTPVKLATEV 386 I+ V+ V++ + Sbjct: 235 VQVINEPIKYSVEPDGKRYVEVHQPL 260 >gi|325920553|ref|ZP_08182475.1| putative peptidoglycan binding protein [Xanthomonas gardneri ATCC 19865] gi|325548946|gb|EGD19878.1| putative peptidoglycan binding protein [Xanthomonas gardneri ATCC 19865] Length = 663 Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 64/165 (38%), Gaps = 8/165 (4%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIA 76 + +G + + P+ L + + + D+F + + ++ + S + Sbjct: 279 AVTAVVGTAAIHNPMTVQGLINL--ARTGMLADHVADSFSEATERHLMTETVVPSMDDHI 336 Query: 77 QTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVSVQRLRERLIISG---DLDPSKGLS 131 Q+ + A Q + + + L G+ V L+ LI G + ++ Sbjct: 337 QSIEHKAREQAAPEQTSPAQAQAKDVALRPGDRGTEVLALQASLIQLGINARVKTPIEIT 396 Query: 132 VAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEAMNVPVDLRIRQ 175 +D E V+ FQ+ HG+ + +G+ D +T A+ D I Q Sbjct: 397 GLYDQQTERGVQAFQLMHGMDEVNGIADRATRAAVQQHADDAIAQ 441 >gi|119383021|ref|YP_914077.1| peptidoglycan binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119372788|gb|ABL68381.1| Peptidoglycan-binding domain 1 protein [Paracoccus denitrificans PD1222] Length = 317 Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 8/64 (12%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V+V+RL+ L I + +F + AV+ FQ RHGL G+V T Sbjct: 188 LRSGDKGVAVRRLQYALGI--------DVDGSFGPDTDKAVRDFQKRHGLTVDGVVGQRT 239 Query: 162 LEAM 165 +A+ Sbjct: 240 WKAL 243 >gi|256370856|ref|YP_003108680.1| Peptidoglycan-binding domain 1 protein [Acidimicrobium ferrooxidans DSM 10331] gi|256007440|gb|ACU53007.1| Peptidoglycan-binding domain 1 protein [Acidimicrobium ferrooxidans DSM 10331] Length = 323 Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 10/103 (9%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 +P L G S V+ L RL G + FD V A+ FQ R GL +G+ Sbjct: 1 MPFVSLRGGERSERVEDLCRRLRRLGF---ELEVRDEFDDEVAEAIVAFQRRRGLPETGV 57 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMR--IK----KLLEQKMGL 193 VD T A+ V RI + L R ++ L+ K+G Sbjct: 58 VDLVTWRAV-VEAGFRIGDRLLYLKRPALRGDDVAWLQGKLGS 99 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 12/82 (14%) Query: 94 WPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W + +G+ V L+ +L G DP + + F SA+ Sbjct: 63 WRAVVEAGFRIGDRLLYLKRPALRGDDVAWLQGKLGSLGF-DPGR-VDGIFGPRTRSALM 120 Query: 144 LFQMRHGLDPSGMVDSSTLEAM 165 FQ GL GM ++T+E + Sbjct: 121 EFQANMGLPADGMCGAATIEEL 142 >gi|330808350|ref|YP_004352812.1| hypothetical protein PSEBR_a1605 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376458|gb|AEA67808.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 323 Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 45/177 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ L G+ V + +GR +PI H+ I NP Sbjct: 89 RFILPPGPREG-IVINLAEYRLYYFPKGRNVVYTFPLGIGREGWGSPIAHTSIIAKTPNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ + Sbjct: 148 TWTPPASIKAE-----------------------------------HAADGDPLPNVVPA 172 Query: 303 GKINAMASTKIEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 G N + K + H + + F +R + GC R+ N++++ + Sbjct: 173 GPDNPLGPFKFTLGTPGYLI--HGSNKK--FGIGMRT-SHGCFRMFNNNVLEMAGMV 224 >gi|329935475|ref|ZP_08285335.1| hypothetical protein SGM_0827 [Streptomyces griseoaurantiacus M045] gi|329304999|gb|EGG48866.1| hypothetical protein SGM_0827 [Streptomyces griseoaurantiacus M045] Length = 268 Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GM 156 L G+S +V L++RL+ D+ +DA + +AV FQ+ +G+ G+ Sbjct: 194 AGTLREGDSGPAVSELQQRLLRVPDVYRDGATDGHYDAVLRAAVARFQLWYGIRGDESGV 253 Query: 157 VDSSTLEAM 165 T + Sbjct: 254 YGDDTRRDL 262 >gi|271500201|ref|YP_003333226.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech586] gi|270343756|gb|ACZ76521.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech586] Length = 334 Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 69/211 (32%), Gaps = 48/211 (22%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFN 241 ++ LL ++VN+ L GK + + +G++ R TP++ + + N Sbjct: 88 LQMLLP-DTPREGIVVNLAELRLYYFPKGKNTVIVYPIGIGQLGRNTPVMVTHVIERRPN 146 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W+ P + + +D + P Sbjct: 147 PTWI-----------------PTANTRRHYKE----------QGIDLPAMVPG------- 172 Query: 302 PGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 G N M + Y +H T F +R +SGC+R+ D+ L D Sbjct: 173 -GPDNPMGLFALRLEKSGGVYSIHGTNAD--FGIGMR-VSSGCIRL-RPEDI-EALFNDV 226 Query: 361 PTWSRYHI-----EEVVKTRKTTPVKLATEV 386 P +R I + V+ V++ + Sbjct: 227 PVGTRVQIINEPVKIAVEPDGKRYVEVHQPL 257 >gi|319639270|ref|ZP_07994021.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria mucosa C102] gi|317399454|gb|EFV80124.1| ErfK/YbiS/YcfS/YnhG family protein [Neisseria mucosa C102] Length = 368 Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 46/193 (23%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V++NI L +NGK+ V VG+ QT + +I +NP W IP+SI ++ Sbjct: 48 QHVVINITQQRLFLYDNGKLSKIYPVAVGKAMTQTTLGEHKIGAKAYNPVWHIPKSIQKE 107 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + G N + + Sbjct: 108 ---------------------RNDGVKSVP------------------AGPNNPLGPVFV 128 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNII--DLDVWLLKDTPTWSRYHIEE 370 + +H T P +V + GCVR+++ + + P Y + Sbjct: 129 RLGDPKLSLGIHGTNAP---ASVPGVRSHGCVRMKSPDALEFAKTIATGAPASVIYQMAS 185 Query: 371 VVKTRKTTPVKLA 383 + + LA Sbjct: 186 -LNEDANQNLWLA 197 >gi|302532519|ref|ZP_07284861.1| peptidoglycan-binding domain 1 protein [Streptomyces sp. C] gi|302441414|gb|EFL13230.1| peptidoglycan-binding domain 1 protein [Streptomyces sp. C] Length = 306 Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GN V L+ L+ G S F A +AVK FQ H L G+V ++T A Sbjct: 22 GNRGTDVLALQRLLVSKG---QSAPADGVFGASTTAAVKRFQASHKLAADGIVGAATWAA 78 Query: 165 M 165 + Sbjct: 79 L 79 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 19/102 (18%) Query: 76 AQTEKAIAFYQD--------ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS 127 A T A+ +Q I+ W L L G S +V L+ G+L+ Sbjct: 50 ASTTAAVKRFQASHKLAADGIVGAATWAAL-APTLKEGASGPAVSALQ------GELNAK 102 Query: 128 KGLSVAFDAY----VESAVKLFQMRHGLDPSGMVDSSTLEAM 165 G + D ++AV+ FQ GL G+V +T + + Sbjct: 103 AGAGLGVDGKFGDGTKAAVRRFQTAAGLTADGVVGPATWKNL 144 >gi|326776721|ref|ZP_08235986.1| Zinc D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus XylebKG-1] gi|326657054|gb|EGE41900.1| Zinc D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus XylebKG-1] Length = 232 Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G + V +L+ R+ + + ++ +AVK FQ +GL G+ Sbjct: 26 TRTLKAGATGNDVTQLQIRVAGYPGYNSVLAIDGSYGPATTAAVKRFQAAYGLAADGVAG 85 Query: 159 SSTLEAM 165 +T + Sbjct: 86 PATQAKL 92 >gi|182436095|ref|YP_001823814.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464611|dbj|BAG19131.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 245 Score = 61.0 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G + V +L+ R+ + + ++ +AVK FQ +GL G+ Sbjct: 39 TRTLKAGATGNDVTQLQIRVAGYPGYNSVLAIDGSYGPATTAAVKRFQAAYGLAADGVAG 98 Query: 159 SSTLEAM 165 +T + Sbjct: 99 PATQAKL 105 >gi|294636112|ref|ZP_06714538.1| ErfK/YbiS/YcfS/YnhG family protein [Edwardsiella tarda ATCC 23685] gi|291090579|gb|EFE23140.1| ErfK/YbiS/YcfS/YnhG family protein [Edwardsiella tarda ATCC 23685] Length = 337 Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 67/208 (32%), Gaps = 47/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L +++N+ L G+ + +G++ R TP + +R+++ + +P W Sbjct: 91 MLLPDAPREGIVINLAELRLFYYPPGGERVEVYPIGIGQLGRNTPEMVTRVSQHIKDPTW 150 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +I + + G Sbjct: 151 TPTANI-----------------RRHYR------------------EQGITLPAVMPAGP 175 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + ++ Y +H T F +R +SGC+R+ D+ L + P Sbjct: 176 DNPMGRYALRLAAQGGVYLIHGTNAD--FGIGMR-VSSGCIRL-RPDDI-EALFRSVPGN 230 Query: 364 SRYHI-----EEVVKTRKTTPVKLATEV 386 +R I + V+ V++ + Sbjct: 231 TRVQIVNQPVKVAVEPDGKRYVEVHQPL 258 >gi|289668377|ref|ZP_06489452.1| hypothetical protein XcampmN_07730 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 616 Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 3/70 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L V+ L++ L G D + AVK FQ HGL G Sbjct: 416 SGVLRENVCGADVRTLQQTLQQLGYKDAHGHELKPDGVYGQRTSEAVKAFQRAHGLQDDG 475 Query: 156 MVDSSTLEAM 165 +V T A+ Sbjct: 476 VVGRDTQAAL 485 >gi|153831567|ref|ZP_01984234.1| ErfK/YbiS/YcfS/YnhG [Vibrio harveyi HY01] gi|148872077|gb|EDL70894.1| ErfK/YbiS/YcfS/YnhG [Vibrio harveyi HY01] Length = 308 Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 55/202 (27%) Query: 189 QKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + +++N+ L V V +GR+ R TP + + I++ NP W P Sbjct: 97 PDVPHKGIVINLAELRLYYFPAKENVVHIFPVGIGRIGRDTPEMTTSISQKRPNPTWTPP 156 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI + + A P + G N Sbjct: 157 SSI-RAEYKAKGIDLPAVV----------------------------------PAGPDNP 181 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 + + + Y +H T + F +R ++GC+R+ P + Sbjct: 182 LGMFALRLAYGHGEYLIHGTNKD--FGIGMR-VSAGCIRM-------------DPNDIEW 225 Query: 367 HIEEVVKTRKTTPVKLATEVPV 388 ++V + K + V V Sbjct: 226 LFDKVRRGEKVKIIN--QPVKV 245 >gi|261251523|ref|ZP_05944097.1| hypothetical protein VIA_001544 [Vibrio orientalis CIP 102891] gi|260938396|gb|EEX94384.1| hypothetical protein VIA_001544 [Vibrio orientalis CIP 102891] Length = 301 Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L E V +GRV R TP + + I++ NP W P SI +K+ Sbjct: 93 IVINLAELRLYYFEPEINKVHIFPVGIGRVGRDTPEMKTTISQKRPNPTWTPPTSI-RKE 151 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 A + P + G N + + Sbjct: 152 YAAKGIELPAVV----------------------------------PAGPENPLGEYALR 177 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 Y +H T + F +R +SGC+R+ + D+ WL + + Sbjct: 178 LSYGAGDYLIHGTNKD--FGIGLR-VSSGCIRM-DPKDI-EWLFPQVKLGEKVRV----- 227 Query: 374 TRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 228 INEPIKVALEPDRSVFL 244 >gi|320007102|gb|ADW01952.1| Peptidoglycan-binding domain 1 protein [Streptomyces flavogriseus ATCC 33331] Length = 126 Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 31/64 (48%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S VQ L+ L+ G S G+ F A ESAV+ FQ G+ G+V +T Sbjct: 61 GDSGAKVQELQALLVFKGFSVGSSGVDGQFGAGTESAVRRFQTSRGISSDGVVGPTTWHY 120 Query: 165 MNVP 168 + P Sbjct: 121 LRTP 124 >gi|225076549|ref|ZP_03719748.1| hypothetical protein NEIFLAOT_01597 [Neisseria flavescens NRL30031/H210] gi|224952120|gb|EEG33329.1| hypothetical protein NEIFLAOT_01597 [Neisseria flavescens NRL30031/H210] Length = 353 Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 70/232 (30%), Gaps = 71/232 (30%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++V++NI L +NGK+ V VG+ QT + +I +NP W IP+SI ++ Sbjct: 33 QHVVINITQQRLFLYDNGKLSKIYPVAVGKAMTQTNLGEHKIGAKAYNPVWHIPKSIQKE 92 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 G + G N + + Sbjct: 93 ---------------------RNDGVKSVP------------------AGPNNPLGPVFV 113 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 + +H T P +V + GCVR+++ L + + Sbjct: 114 RLGDPKLSLGIHGTNAP---ASVPGVRSHGCVRMKSPDAL--------------EFAKTI 156 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDSIIQF----RDDIYGLDNVHVGII 420 T V +Y A +D+ D Y N+ + Sbjct: 157 ATGSPASV----------IYQMASLNEDANQNLWLAAYRDPYDKKNLDTAAL 198 >gi|15615884|ref|NP_244188.1| cell wall-binding protein [Bacillus halodurans C-125] gi|10175945|dbj|BAB07041.1| cell wall-binding protein [Bacillus halodurans C-125] Length = 311 Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LH G S SV L++ L G LD + F E AVK FQ H L G+ T Sbjct: 41 LHEGVESESVTELQKLLETEGYLDDFEKG--VFHTETEEAVKQFQKDHELVVDGIAGPQT 98 Query: 162 LEAM 165 L A+ Sbjct: 99 LGAL 102 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V L+ +L + + L +D AV+ FQ + L G+ T Sbjct: 105 LREGDEHEVVVDLKAKLEELKLFEGT--LDQQYDEDTTEAVREFQEKLDLQVDGVAGPET 162 Query: 162 LEAM 165 + Sbjct: 163 FGEL 166 >gi|332708202|ref|ZP_08428192.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332353028|gb|EGJ32578.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 435 Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 23/177 (12%) Query: 19 ILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGI-----DSDIPIISKE 73 I + ++L A+ +++ + LA + D+ S Sbjct: 47 ISAIAIALTILSTAANASAKVLQKGSRGSQVTSLQKELAAAGFYKGRITGNYDMLTQSYV 106 Query: 74 TIAQTEKAI------------AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLII 120 I Q +K + A Y+ + G LP L G+ V L+++L Sbjct: 107 AIFQQKKGLPIDGVAGPKTLAALYK---TAGTDIRLPTNTQLKRGSRGTVVSDLQKKLTT 163 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 G + ++ + ++AV FQ GL G+ +TL +N QL+ Sbjct: 164 LGFFNG--PITGYYGRITQAAVIKFQQAKGLPVDGVAGPNTLFVINGGSIKNATQLR 218 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 I PL G+ V L+ RLI G K F E+A+K +Q GL P+G+ D Sbjct: 368 ITPLKRGSRGTRVNSLQNRLIYLGYYKGLKDG--VFGPATEAALKRYQQDKGLFPNGIAD 425 Query: 159 SSTLEAM 165 + T ++ Sbjct: 426 ARTFSSL 432 Score = 56.4 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ SV +L+ RL G ++ + E+AVK +Q+ L +G+ DS T Sbjct: 294 LRPGSNGESVTKLQNRLAQLGFYKG--PVTGYYGKLTETAVKDYQLSRELPANGIADSRT 351 Query: 162 LEAM 165 L A+ Sbjct: 352 LSAL 355 Score = 45.2 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L GN +V +L++R+ + ++ + E+ V FQ GL +G+ DS T Sbjct: 217 LRRGNRGTAVTKLQQRMRELKVYNG--PVTGFYGRLTEAGVVKFQRLRGLPVTGIADSRT 274 Query: 162 LEAMNVPVDLR 172 L + + + Sbjct: 275 LSDLAKNPNDK 285 >gi|256752566|ref|ZP_05493421.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus CCSD1] gi|256748563|gb|EEU61612.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus CCSD1] Length = 327 Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L +G+ V L+ RL G + F E AVK +Q GL + Sbjct: 173 PPIEYPTLKIGDKGPFVVNLQARLKSLGF--DPGPIDGIFGRKTEEAVKAYQQSRGLPVT 230 Query: 155 GMVDSSTLEAM 165 G+VD+ T A+ Sbjct: 231 GIVDNVTWNAL 241 >gi|167036871|ref|YP_001664449.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039577|ref|YP_001662562.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter sp. X514] gi|300915173|ref|ZP_07132488.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X561] gi|307725097|ref|YP_003904848.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X513] gi|320115293|ref|YP_004185452.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853817|gb|ABY92226.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X514] gi|166855705|gb|ABY94113.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300888897|gb|EFK84044.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X561] gi|307582158|gb|ADN55557.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X513] gi|319928384|gb|ADV79069.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 327 Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L +G+ V L+ RL G + F E AVK +Q GL + Sbjct: 173 PPIEYPTLKIGDKGPFVVNLQARLKSLGF--DPGPIDGIFGRKTEEAVKAYQQSRGLPVT 230 Query: 155 GMVDSSTLEAM 165 G+VD+ T A+ Sbjct: 231 GIVDNVTWNAL 241 >gi|258516740|ref|YP_003192962.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum acetoxidans DSM 771] gi|257780445|gb|ACV64339.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfotomaculum acetoxidans DSM 771] Length = 309 Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 26/159 (16%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 VQ L+E+L+ G + + F AV+ Q +HG+ G+V + T+ Sbjct: 44 PNMKGKDVQELQEQLMDLGLYE--DKIDGVFGPSTAQAVQALQEKHGVKTDGIV-NVTIW 100 Query: 164 AMNVPV-DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 AM + + Q + G ++V+ +L + + + V VG Sbjct: 101 AMLLSEHGATVTQKE---------SPPPQGKPSIVVDTVNRTLTVFIDNEPYRQYYVAVG 151 Query: 223 RVDRQTPILHSRINRIMFNPYW-----------VIPRSI 250 + + TPI + R N W +P I Sbjct: 152 KPETPTPIGSWTVVRKAMN--WGTGFGTRWIGLNVPWGI 188 >gi|171316535|ref|ZP_02905752.1| Peptidoglycan-binding domain 1 protein [Burkholderia ambifaria MEX-5] gi|171098369|gb|EDT43174.1| Peptidoglycan-binding domain 1 protein [Burkholderia ambifaria MEX-5] Length = 266 Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L LG+ V L+ +LI +G + + +AV FQ HGL G+ Sbjct: 3 KTLRLGDRGADVSYLQRQLIAAG---ARLDTDAIYGSATRNAVVAFQATHGLVADGIAGP 59 Query: 160 STLEAM 165 T + Sbjct: 60 KTWSTL 65 >gi|303230788|ref|ZP_07317535.1| putative protein P60 [Veillonella atypica ACS-049-V-Sch6] gi|302514548|gb|EFL56543.1| putative protein P60 [Veillonella atypica ACS-049-V-Sch6] Length = 264 Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 2/79 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V ++++LI G + + + + AV+LFQ GL G++ +T Sbjct: 30 LQYGDKGRNVIAVQQQLIKHGY--NATDKNGVYGKETKWAVRLFQQDRGLPVDGIIGPAT 87 Query: 162 LEAMNVPVDLRIRQLQVNL 180 A+ L N Sbjct: 88 YNALMGAPRTTKTVLSNNA 106 >gi|323140555|ref|ZP_08075482.1| NlpC/P60 family protein [Phascolarctobacterium sp. YIT 12067] gi|322415007|gb|EFY05799.1| NlpC/P60 family protein [Phascolarctobacterium sp. YIT 12067] Length = 210 Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 4/84 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 G++ V +++RL+ + F E AVK FQ GL+ G+V S+ Sbjct: 16 SFQRGDNGQEVVAIQKRLLELSY--SINNIDGDFGPETERAVKNFQADKGLEVDGVVGSA 73 Query: 161 TLEAM-NVP-VDLRIRQLQVNLMR 182 T A+ N R + N++R Sbjct: 74 TYRALMNREMPPNRSNSVVRNVLR 97 >gi|319442206|ref|ZP_07991362.1| putative hydrolase [Corynebacterium variabile DSM 44702] Length = 396 Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 12/76 (15%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGL------------SVAFDAYVESAVKLFQMRH 149 LG+ V +R L G +D G FD ++SA++ FQ Sbjct: 6 YKLGDRGPRVAEVRGTLARLGFIDGFAGDATGEANQRWRPEDETFDEGLDSALRGFQQHR 65 Query: 150 GLDPSGMVDSSTLEAM 165 G+ G + TL A+ Sbjct: 66 GIIADGHITEGTLRAL 81 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 7/94 (7%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V L+ L G + + F AV +Q+ GL+P G+V +TL A++ Sbjct: 104 GDDVAELQGHLHDLGFF--TSRIDGHFGPMTHDAVAAYQLNAGLNPDGIVGPATLRALSY 161 Query: 168 PVDLRIR----QLQVNLMRIKKLLEQKMGLRYVL 197 + RI Q +I+ Q G R VL Sbjct: 162 -LGRRITGGSPQAIREREQIRAAGPQLTGKRVVL 194 >gi|303229441|ref|ZP_07316231.1| putative protein P60 [Veillonella atypica ACS-134-V-Col7a] gi|302515977|gb|EFL57929.1| putative protein P60 [Veillonella atypica ACS-134-V-Col7a] Length = 264 Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V ++++LI G + + + + AV+LFQ GL G++ +T Sbjct: 30 LQYGDKGRNVIAVQQQLIKHGY--NATDKNGVYGKETKWAVRLFQQDRGLPVDGIIGPAT 87 Query: 162 LEAMNVPVDLRIRQLQVN 179 A+ L N Sbjct: 88 YNALMGAPRTTKAVLSNN 105 >gi|302389944|ref|YP_003825765.1| spore cortex-lytic enzyme [Thermosediminibacter oceani DSM 16646] gi|302200572|gb|ADL08142.1| spore cortex-lytic enzyme [Thermosediminibacter oceani DSM 16646] Length = 228 Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 2/77 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L R L G+ V +L+ RL G + F +SAV FQ G+ G Sbjct: 27 TLGDRILKQGSRGDDVAQLQYRLNTLGFWCG--KVDGIFGPKTKSAVMKFQSAKGIKVDG 84 Query: 156 MVDSSTLEAMNVPVDLR 172 +V TL AM V R Sbjct: 85 IVGPQTLSAMGVYKASR 101 >gi|238919740|ref|YP_002933255.1| hypothetical protein NT01EI_1844 [Edwardsiella ictaluri 93-146] gi|238869309|gb|ACR69020.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 340 Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 66/185 (35%), Gaps = 42/185 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYW 244 +L +++N+ L G+ + + +G++ R TP + +RI++ + +P W Sbjct: 90 MLLPDAPREGIVINLAELRLFYYPPGENRVEVYPIGIGQLGRDTPEMVTRISQHIKDPTW 149 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + I++D A P + G Sbjct: 150 T-PTANIRRDYQAQGISLPAVM----------------------------------PAGP 174 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + ++ Y +H T F +R +SGC+R+ D+ L + P Sbjct: 175 DNPMGRFALRLAAQGGVYLIHGTNAD--FGIGMR-VSSGCIRL-RPDDI-EALFRSVPGG 229 Query: 364 SRYHI 368 +R I Sbjct: 230 TRVQI 234 >gi|320008650|gb|ADW03500.1| Zinc D-Ala-D-Ala carboxypeptidase [Streptomyces flavogriseus ATCC 33331] Length = 245 Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 4/69 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGD--LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 R L G + V +L+ R +SG + + ++ +AVK FQ +GL G+ Sbjct: 39 SRTLSSGATGADVTQLQIR--VSGYPGYNSVLAVDGSYGPATTAAVKRFQAAYGLTADGV 96 Query: 157 VDSSTLEAM 165 +T + Sbjct: 97 AGPATFTKL 105 >gi|325920413|ref|ZP_08182342.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas gardneri ATCC 19865] gi|325549103|gb|EGD20028.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas gardneri ATCC 19865] Length = 466 Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 5/70 (7%) Query: 100 RPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L G SV++L+ +L G D P + F + AV+ FQ HGL G Sbjct: 250 GRLEQGERGQSVKQLQSQLAQLGATGRDGKPLQADGD-FGGNTKHAVEHFQREHGLQVDG 308 Query: 156 MVDSSTLEAM 165 +V T A+ Sbjct: 309 VVGQRTQAAL 318 >gi|319409155|emb|CBI82799.1| putative Peptidoglycan-binding domain 1 protein [Bartonella schoenbuchensis R1] Length = 395 Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L LG V+ L++RL G + + SA+ FQ H L+ G Sbjct: 214 SVRANGLRLGCKGYRVEALQKRLNDLGY---PVAIDSDYGPDTRSAIFSFQADHNLEVDG 270 Query: 156 MVDSSTLEAMNV 167 +V + T EA++V Sbjct: 271 VVGTKTQEALDV 282 >gi|301064267|ref|ZP_07204710.1| putative secretion ATPase, PEP-CTERM locus family protein [delta proteobacterium NaphS2] gi|300441712|gb|EFK06034.1| putative secretion ATPase, PEP-CTERM locus family protein [delta proteobacterium NaphS2] Length = 521 Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S +V L+E L G L G FD VK FQ GL+ G+V T Sbjct: 450 LKQGMRSPAVFTLQEILKDLGYLVTLNGN---FDQQTLEEVKRFQDEFGLEADGVVGFRT 506 Query: 162 LEAM 165 L + Sbjct: 507 LTLL 510 >gi|149187438|ref|ZP_01865736.1| hypothetical protein VSAK1_17982 [Vibrio shilonii AK1] gi|148838974|gb|EDL55913.1| hypothetical protein VSAK1_17982 [Vibrio shilonii AK1] Length = 303 Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 71/197 (36%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L E + + V +GR+ + TP + ++I+++ P W P SI +K+ Sbjct: 94 IVINLAELRLYYFEPDKNLVHIFPVGIGRIGQDTPEMTTKISQLREAPTWTPPTSI-RKE 152 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 +A + P+ + G N + + Sbjct: 153 YLAKGVELPKVV----------------------------------PAGPENPLGDYAMR 178 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 +Y +H T + F +R ++GC+R+ + D+ WL + I + Sbjct: 179 LAYGTGSYLIHGTNKD--FGIGLR-VSAGCIRM-DPKDI-DWLFHQAKVGMQVRIID--- 230 Query: 374 TRKTTPVKLATEVPVHF 390 + + L + V Sbjct: 231 --EPIKIALEPDRSVFI 245 >gi|159901703|ref|YP_001547949.1| peptidoglycan binding domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894742|gb|ABX07821.1| Peptidoglycan-binding domain 1 protein [Herpetosiphon aurantiacus ATCC 23779] Length = 306 Score = 60.6 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 8/69 (11%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L GN V+ L+ L I D F +AVK FQ R GL G+V + Sbjct: 35 TLSKGNRGTDVKALQYLLAIDAD--------GVFGDATVTAVKRFQGRKGLTADGIVGPA 86 Query: 161 TLEAMNVPV 169 T +A+ V Sbjct: 87 TWDALTETV 95 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 54/152 (35%), Gaps = 5/152 (3%) Query: 14 FFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE 73 F+ L+ + S A +++ LA G+ D + + + Sbjct: 10 IFLLLVGFLVSSQSSAHAIAGAFFHTLSKGNRGTDVKALQYLLAIDADGVFGDATVTAVK 69 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 Q K + I+ W L + G+S +V+ ++ L + Sbjct: 70 RF-QGRKGLTA-DGIVGPATWDAL-TETVRPGDSGNAVKAIQTELNAKH--KAGLTVDGK 124 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F A E AVK FQ G+ G+V S+T + + Sbjct: 125 FGAGTEQAVKQFQRHVGITADGIVGSTTWKQL 156 >gi|238782569|ref|ZP_04626600.1| hypothetical protein yberc0001_22190 [Yersinia bercovieri ATCC 43970] gi|238716496|gb|EEQ08477.1| hypothetical protein yberc0001_22190 [Yersinia bercovieri ATCC 43970] Length = 355 Score = 60.2 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 47/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L +++N+ L G+ + + +G++ R TP + + +++ + NP W Sbjct: 91 MLLPDTPREGIVINLAELRLYYYPKGQNKVIVYPIGIGQLGRNTPTMTTSVSQKIPNPTW 150 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + I+K YL E G Sbjct: 151 T-PTANIRK----------HYLA------------------------EGVTLPAVVPAGP 175 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + Y +H T F +R +SGC+R+ D+ L K P Sbjct: 176 ENPMGLFAMRLAAGGGEYLIHGTNAN--FGIGMR-VSSGCIRL-RPDDI-EALFKSVPKG 230 Query: 364 SRYHI-----EEVVKTRKTTPVKLATEV 386 +R I + V+ V++ + Sbjct: 231 TRVQIINEPVKYSVEPDGKRYVEVHQPL 258 >gi|313499594|gb|ADR60960.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida BIRD-1] Length = 325 Score = 60.2 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 44/170 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ + G+ V + +GR +PI +++I NP W P SI +K+ Sbjct: 100 IVINLAEYRMYYFPKGESVVYTFPLGIGREGWGSPIANTKITAKTPNPTWTPPASI-RKE 158 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ + G N + K Sbjct: 159 ----------------------------------HAEDGDILPTVVPAGPDNPLGPFKFT 184 Query: 315 FYSR-NNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 H + + F +R + GC R+ N+++L + TP Sbjct: 185 LGVPGYLI--HGSNKK--FGIGMRT-SHGCFRMFNNNVLELSKMVPVGTP 229 >gi|302562363|ref|ZP_07314705.1| peptidoglycan binding domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302479981|gb|EFL43074.1| peptidoglycan binding domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 112 Score = 60.2 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVDS 159 L G+S V L+ERL+ D+ S +DA + +AV FQ+ +G+ G+ Sbjct: 38 LREGDSGPEVAELQERLLRIPDVYRSGAPDGRYDATLSAAVARFQLWYGVRGDETGVYGD 97 Query: 160 STLEAM 165 T A+ Sbjct: 98 DTRFAL 103 >gi|104781033|ref|YP_607531.1| hypothetical protein PSEEN1888 [Pseudomonas entomophila L48] gi|95110020|emb|CAK14725.1| conserved hypothetical protein; ErfK/YbiS/YcfS/YnhG family [Pseudomonas entomophila L48] Length = 325 Score = 60.2 bits (145), Expect = 5e-07, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 53/175 (30%), Gaps = 54/175 (30%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI---- 250 V++N+ L G+ V + +GR +PI +++I NP W P SI Sbjct: 100 VVINLAEYRLYYYPKGQGVVYTFPLGIGREGWGSPIANTKITAKTPNPTWTPPASIRAEH 159 Query: 251 -IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 D++ + G N + Sbjct: 160 AADGDILPAVV----------------------------------------PAGPDNPLG 179 Query: 310 STKIEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 K H + + F +R + GC R+ N+++L + TP Sbjct: 180 PFKFTLGVPGYLI--HGSNKK--FGIGMRT-SHGCFRMLNNNVLELSKMVPVGTP 229 >gi|168185528|ref|ZP_02620163.1| spore cortex-lytic enzyme [Clostridium botulinum C str. Eklund] gi|169296468|gb|EDS78601.1| spore cortex-lytic enzyme [Clostridium botulinum C str. Eklund] Length = 241 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 4/89 (4%) Query: 81 AIAFYQDILSR--GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + Y I + + G+ + V ++ RL + ++ Y+ Sbjct: 17 MLFSYASIPQHVIPYFNSIKTSVYKYGSKNNIVTEIQRRLKAWDYYEGELDGKYGYETYL 76 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 AVK FQ ++GL G+V STL ++ + Sbjct: 77 --AVKDFQRKNGLIVDGIVGDSTLASLGI 103 >gi|118470609|ref|YP_889561.1| gp35 protein [Mycobacterium smegmatis str. MC2 155] gi|118171896|gb|ABK72792.1| gp35 protein [Mycobacterium smegmatis str. MC2 155] Length = 275 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 9/78 (11%) Query: 95 PELPIRP-----LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 P +P+ L+ V L+ RL G + F E+AV+ FQ R Sbjct: 200 PRVPVGEYIDVLLYRPMEGAEVAELQRRLNALG---ADLVVDGIFGPLTEAAVRDFQRRT 256 Query: 150 -GLDPSGMVDSSTLEAMN 166 GL G+V +T A+N Sbjct: 257 PGLKVDGIVGPATAAALN 274 >gi|148548657|ref|YP_001268759.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida F1] gi|148512715|gb|ABQ79575.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida F1] Length = 325 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 44/170 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ + G+ V + +GR +PI +++I NP W P SI +K+ Sbjct: 100 IVINLAEYRMYYFPKGESVVYTFPLGIGREGWGSPIANTKITAKTPNPTWTPPASI-RKE 158 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ + G N + K Sbjct: 159 ----------------------------------HAEDGDILPTVVPAGPDNPLGPFKFT 184 Query: 315 FYSR-NNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 H + + F +R + GC R+ N+++L + TP Sbjct: 185 LGVPGYLI--HGSNKK--FGIGMRT-SHGCFRMLNNNVLELSKMVPVGTP 229 >gi|284046013|ref|YP_003396353.1| transglycosylase [Conexibacter woesei DSM 14684] gi|283950234|gb|ADB52978.1| Transglycosylase domain protein [Conexibacter woesei DSM 14684] Length = 224 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 8/76 (10%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L G+S V +L+++L + D AF E AV+ +Q + GL G+V Sbjct: 72 GVLKKGSSGPVVVQLQQKLGVPAD--------GAFGPQTERAVRRYQKQKGLGVDGVVGP 123 Query: 160 STLEAMNVPVDLRIRQ 175 T A+ + + Q Sbjct: 124 QTASALGISLATAQAQ 139 >gi|251789311|ref|YP_003004032.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya zeae Ech1591] gi|247537932|gb|ACT06553.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya zeae Ech1591] Length = 333 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 67/211 (31%), Gaps = 48/211 (22%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFN 241 ++ LL ++VN+ L GK + + +G++ R TP++ + + N Sbjct: 88 LQMLLP-DTPREGIVVNLAELRLYYFPKGKNTVIVYPIGIGQLGRNTPVMVTHVIERRPN 146 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W + Y K+ I + Sbjct: 147 PTW-----------IPTANTRRHY-KEQGITL-----------------------PAVVP 171 Query: 302 PGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 G N M + Y +H T F +R +SGC+R+ D+ L D Sbjct: 172 GGPDNPMGLFALRLEKSGGVYSIHGTNAD--FGIGMR-VSSGCIRL-RPEDI-EALFNDV 226 Query: 361 PTWSR-----YHIEEVVKTRKTTPVKLATEV 386 P +R I+ V+ V++ + Sbjct: 227 PVGTRVQIINEPIKIAVEPDGKRYVEVHQPL 257 >gi|238753642|ref|ZP_04615004.1| hypothetical protein yruck0001_13730 [Yersinia ruckeri ATCC 29473] gi|238708194|gb|EEQ00550.1| hypothetical protein yruck0001_13730 [Yersinia ruckeri ATCC 29473] Length = 346 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 47/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKV-GLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L +++N+ L G+ + + +G++ R TP + + +++ + NP W Sbjct: 91 MLLPDTPREGIVINLAELRLYYYPKGQDKVIVYPIGIGQLGRNTPTMTTSVSQKIPNPTW 150 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + I+K YL G Sbjct: 151 T-PTANIRK----------HYLAQ------------------------GVTLPAVVPAGP 175 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + Y +H T F +R +SGC+R+ D+ L P Sbjct: 176 ENPMGLFAMRLAAGGGEYLIHGTNAN--FGIGMR-VSSGCIRL-RPDDI-QALFSSVPKG 230 Query: 364 SR-----YHIEEVVKTRKTTPVKLATEV 386 +R I+ V+ V++ + Sbjct: 231 TRVQVINEPIKYSVEPDGKRYVEVHQPL 258 >gi|325274314|ref|ZP_08140422.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas sp. TJI-51] gi|324100552|gb|EGB98290.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas sp. TJI-51] Length = 325 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 58/182 (31%), Gaps = 45/182 (24%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L V++N+ L G+ V + +GR +PI +++I NP Sbjct: 89 RYILPPGPREG-VVINLAEYRLYYYPKGQNVVYTFPLGIGREGWGSPIANTKIIAKTPNP 147 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI +K+ ++ + Sbjct: 148 TWTPPASI-RKE----------------------------------HAADGDILPAVVPA 172 Query: 303 GKINAMASTKIEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKD 359 G N + K H + + F +R + GC R+ N+++L + Sbjct: 173 GPDNPLGPFKFTLGVPGYLI--HGSNKK--FGIGMRT-SHGCFRMLNNNVLELSKLVPVG 227 Query: 360 TP 361 TP Sbjct: 228 TP 229 >gi|114564147|ref|YP_751661.1| peptidoglycan binding domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114335440|gb|ABI72822.1| Peptidoglycan-binding domain 1 protein [Shewanella frigidimarina NCIMB 400] Length = 557 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Query: 94 WPELPIRPLHLGNSS--VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W I P +G SS VQ L L + L FD+ +E + FQ +HGL Sbjct: 468 WQPDSILPREIGQSSSLAQVQWLENSLALVN--KRRARLLTQFDSELEQQLMTFQRQHGL 525 Query: 152 DPSGMVDSSTLEAMN 166 P G+ + TL +N Sbjct: 526 KPDGIAGNQTLVQLN 540 >gi|295445961|gb|ADG21908.1| amidase [Providencia sp. WRB4] Length = 268 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 33/151 (21%), Positives = 52/151 (34%), Gaps = 33/151 (21%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 98 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQQALDKGQL 144 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + E +A + WP+L + L G S V Sbjct: 145 PTFVAGLAPQH--------PQYAVMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 193 Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 LRE L +G LD +++ D AV Sbjct: 194 PALREILQRTGMLDGGPKITLPGDDTPTDAV 224 >gi|302390285|ref|YP_003826106.1| Peptidoglycan-binding domain 1 protein [Thermosediminibacter oceani DSM 16646] gi|302200913|gb|ADL08483.1| Peptidoglycan-binding domain 1 protein [Thermosediminibacter oceani DSM 16646] Length = 486 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L LG+ V+ L+ L G + F +AVK FQ ++GL G+V Sbjct: 84 RLLALGSYGQDVKLLQTMLNQRGY---KLKVDGIFGPKTLAAVKDFQKKNGLKVDGIVGP 140 Query: 160 STLEAM 165 TL + Sbjct: 141 KTLAKL 146 >gi|328954552|ref|YP_004371886.1| Peptidoglycan-binding domain 1 protein [Desulfobacca acetoxidans DSM 11109] gi|328454876|gb|AEB10705.1| Peptidoglycan-binding domain 1 protein [Desulfobacca acetoxidans DSM 11109] Length = 524 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKG-LSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + L LG V L++RL DL G L FD+ E+AV FQ L G+V Sbjct: 180 AQALQLGAKGSEVLELQKRLK---DLRFDPGRLDGVFDSGTEAAVVAFQKSEDLLADGIV 236 Query: 158 DSSTLEAM 165 TL A+ Sbjct: 237 GPKTLAAL 244 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G S V+ L+++L G L F E AV FQ LD G+ T Sbjct: 259 LQVGASGPHVEALQKQLAALGF--DPGPLDGVFGEKTERAVLAFQESRELDADGIAGPQT 316 Query: 162 LEAM 165 + A+ Sbjct: 317 MAAL 320 >gi|291441499|ref|ZP_06580889.1| Muramoyl-pentapeptide carboxypeptidase [Streptomyces ghanaensis ATCC 14672] gi|291344394|gb|EFE71350.1| Muramoyl-pentapeptide carboxypeptidase [Streptomyces ghanaensis ATCC 14672] Length = 245 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G S V +L+ RL + +F +A+K FQ +GL G+ Sbjct: 39 TRTLSQGASGADVTQLQIRLGGYPGYGSVLAVDGSFGPATAAALKRFQSAYGLTADGVAG 98 Query: 159 SSTLEAM 165 +T + Sbjct: 99 PNTYSKL 105 >gi|253682164|ref|ZP_04862961.1| spore cortex-lytic enzyme [Clostridium botulinum D str. 1873] gi|253561876|gb|EES91328.1| spore cortex-lytic enzyme [Clostridium botulinum D str. 1873] Length = 238 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + G V ++ RL + ++ Y+ AVK FQ ++ L G Sbjct: 34 AVKTSVYKYGTKDSIVTEIQRRLKAWDYYNGELDGKYGYETYL--AVKEFQRKNDLTVDG 91 Query: 156 MVDSSTLEAMNV 167 +V TL A+ + Sbjct: 92 IVGDYTLAALGI 103 >gi|239933149|ref|ZP_04690102.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces ghanaensis ATCC 14672] Length = 225 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G S V +L+ RL + +F +A+K FQ +GL G+ Sbjct: 19 TRTLSQGASGADVTQLQIRLGGYPGYGSVLAVDGSFGPATAAALKRFQSAYGLTADGVAG 78 Query: 159 SSTLEAM 165 +T + Sbjct: 79 PNTYSKL 85 >gi|238787126|ref|ZP_04630926.1| hypothetical protein yfred0001_6120 [Yersinia frederiksenii ATCC 33641] gi|238724914|gb|EEQ16554.1| hypothetical protein yfred0001_6120 [Yersinia frederiksenii ATCC 33641] Length = 355 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 47/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L +++N+ L G+ + + +G++ R TP + + +++ + NP W Sbjct: 91 MLLPDTPREGIVINLAELRLYYYPKGQNKVIVYPIGIGQLGRNTPTMTTSVSQKIPNPTW 150 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + I+K YL E G Sbjct: 151 T-PTANIRK----------HYLA------------------------EGVTLPAVVPAGP 175 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + Y +H T F +R +SGC+R+ D+ L K P Sbjct: 176 ENPMGLFAMRLAAGGGEYLIHGTNAN--FGIGMR-VSSGCIRL-RPDDI-EALFKSVPKG 230 Query: 364 SRYHI-----EEVVKTRKTTPVKLATEV 386 +R I + V+ V++ + Sbjct: 231 TRVQIINEPVKYSVEPDGKRYVEVHQPL 258 >gi|123442427|ref|YP_001006406.1| hypothetical protein YE2166 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332161649|ref|YP_004298226.1| hypothetical protein YE105_C2027 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122089388|emb|CAL12236.1| putative exported protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318605859|emb|CBY27357.1| L,D-transpeptidase YcfS [Yersinia enterocolitica subsp. palearctica Y11] gi|325665879|gb|ADZ42523.1| hypothetical protein YE105_C2027 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861432|emb|CBX71658.1| uncharacterized protein ycfS [Yersinia enterocolitica W22703] Length = 355 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 67/208 (32%), Gaps = 47/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L +++N+ L G+ + + +G++ R TP + + +++ + NP W Sbjct: 91 MLLPDTPREGIVINLAELRLYYYPKGQNKVIVYPIGIGQLGRNTPTMTTSVSQKIPNPTW 150 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +I + + E G Sbjct: 151 TPTANI-----------------RKHY------------------AAEGVTLPAVVPAGP 175 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + Y +H T F +R +SGC+R+ D+ L K P Sbjct: 176 ENPMGLFAMRLAAGGGEYLIHGTNAN--FGIGMR-VSSGCIRL-RPDDI-EALFKAVPKG 230 Query: 364 SRYHI-----EEVVKTRKTTPVKLATEV 386 +R I + V+ V++ + Sbjct: 231 TRVQIINEPVKYSVEPDGKRYVEVHQPL 258 >gi|238791662|ref|ZP_04635299.1| hypothetical protein yinte0001_13750 [Yersinia intermedia ATCC 29909] gi|238728766|gb|EEQ20283.1| hypothetical protein yinte0001_13750 [Yersinia intermedia ATCC 29909] Length = 355 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 71/212 (33%), Gaps = 55/212 (25%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV-----GRVDRQTPILHSRINRIMF 240 +L +++N+ L G+ S VIV G++ R TP + + +++ + Sbjct: 91 MLLPDTPREGIVINLAELRLYYYPKGQ----SKVIVYPIGIGQLGRNTPTMTTSVSQKIP 146 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP W P + I+K +A P + Sbjct: 147 NPTWT-PTANIRKHYLAQGVTLPSVV---------------------------------- 171 Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKD 359 G N M + + Y +H T F +R +SGC+R+ D+ L Sbjct: 172 PAGPENPMGLFAMRLSAGGGEYLIHGTNAN--FGIGMR-VSSGCIRL-RPDDI-KALFSS 226 Query: 360 TPTWSRYHI-----EEVVKTRKTTPVKLATEV 386 P +R I + V+ V++ + Sbjct: 227 VPKGTRVQIVNEPVKYSVEPDGKRYVEVHQPL 258 >gi|302873222|ref|YP_003841855.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|307688611|ref|ZP_07631057.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|302576079|gb|ADL50091.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] Length = 508 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 17/100 (17%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L LG+S +V+ L+ L G +KG F +AV FQ GL G+V Sbjct: 121 ASALKLGSSGEAVKELQVNLTKLGF--DTKGTDGVFGQNTYNAVVAFQNSRGLTADGIVG 178 Query: 159 SST-------LEAMN--------VPVDLRIRQLQVNLMRI 183 +T + A+N + QLQVNL R+ Sbjct: 179 LNTKNAIDTAISALNNPSLALKIGSSGDEVIQLQVNLTRL 218 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L +G+S V +L+ L G + G F AV FQ GL G+V Sbjct: 195 PSLALKIGSSGDEVIQLQVNLTRLGY--DTNGADGVFGQNTYDAVVAFQTAKGLTADGIV 252 Query: 158 DSSTLEAM 165 ++T A+ Sbjct: 253 GAATKNAI 260 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 14/139 (10%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQ 112 N + + + + +T +T+ A A + + L I L G++ V Sbjct: 4 NLINSISALLSGTSNTSATKTANETKTATATANLVAAASTSDSLSISGTLQKGSTGQEVM 63 Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN------ 166 L+ L G + F +SAV FQ GL G+V + T A++ Sbjct: 64 DLQNALKKLGYFTSTVDGD--FGDLTKSAVIKFQAAKGLTQDGIVGTETKAAISDALTAA 121 Query: 167 -----VPVDLRIRQLQVNL 180 +++LQVNL Sbjct: 122 SALKLGSSGEAVKELQVNL 140 >gi|254410280|ref|ZP_05024060.1| Bacterial SH3 domain family [Microcoleus chthonoplastes PCC 7420] gi|196183316|gb|EDX78300.1| Bacterial SH3 domain family [Microcoleus chthonoplastes PCC 7420] Length = 337 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 62/153 (40%), Gaps = 10/153 (6%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNF----LARVDMGIDSDIPIISKETI 75 L + ++L + +S +++ + + ++ + G ++ + + Sbjct: 46 LALAIALSSLSVTSSAWAAVVDTNGSPLNVRSGPGLGYGVVSTLANGTTINLSGLDADGW 105 Query: 76 AQTEKA--IAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 +Q +A + + G +P L G++ +V L+ RL G + ++ Sbjct: 106 SQLSNGNWVAS-RWVQGENGGSTVPSSAVLRPGSTGTAVTNLQNRLQEVGVYNG--PVTG 162 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + E+AV+ Q GL P G+ S+TL A+ Sbjct: 163 YYGRLTEAAVRTVQASEGLTPDGIAGSTTLTAL 195 >gi|167622957|ref|YP_001673251.1| peptidoglycan-binding domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167352979|gb|ABZ75592.1| Peptidoglycan-binding domain 1 protein [Shewanella halifaxensis HAW-EB4] Length = 537 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 4/75 (5%) Query: 94 WPELPIRPLHLGNSS--VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W +P +G S+ +Q L L D P L FD +E +K FQ +HGL Sbjct: 448 WQAPQHQPKEIGQSANQAQIQWLENSLARITDTPP--RLVSHFDPQLEQKLKAFQRQHGL 505 Query: 152 DPSGMVDSSTLEAMN 166 G+ + TL +N Sbjct: 506 IADGIAGTQTLVQLN 520 >gi|290955225|ref|YP_003486407.1| muramoyl-pentapeptide carboxypeptidase [Streptomyces scabiei 87.22] gi|260644751|emb|CBG67836.1| muramoyl-pentapeptide carboxypeptidase [Streptomyces scabiei 87.22] Length = 249 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 7/81 (8%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLF 145 W R ++ G+S V L+ R+ PS G+ F +AV+ F Sbjct: 35 AQAYAW----SRTMNQGDSGADVTELQVRVAGWAADSPSHSRVGVDGDFGPGTAAAVRRF 90 Query: 146 QMRHGLDPSGMVDSSTLEAMN 166 Q +GL G+ +T +N Sbjct: 91 QAAYGLTADGVAGPNTQAKLN 111 >gi|258513404|ref|YP_003189626.1| spore cortex-lytic enzyme [Desulfotomaculum acetoxidans DSM 771] gi|257777109|gb|ACV61003.1| spore cortex-lytic enzyme [Desulfotomaculum acetoxidans DSM 771] Length = 242 Score = 60.2 bits (145), Expect = 6e-07, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LH G+S V ++++RL G + + F AV+ FQ +GL G+V T Sbjct: 41 LHWGSSGYRVTKIQQRLNWWGYYEG--PVDGLFGTKTSKAVRKFQGYNGLSKDGVVGRQT 98 Query: 162 LEAM 165 L A+ Sbjct: 99 LTAL 102 >gi|26989044|ref|NP_744469.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida KT2440] gi|24983869|gb|AAN67933.1|AE016425_10 conserved hypothetical protein [Pseudomonas putida KT2440] Length = 325 Score = 60.2 bits (145), Expect = 7e-07, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 55/170 (32%), Gaps = 44/170 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ + G+ V + +GR +PI ++RI NP W P SI +K+ Sbjct: 100 IVINLAEYRMYYFPKGESVVYTFPLGIGREGWGSPIANTRITAKTPNPTWTPPASI-RKE 158 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ + G N + K Sbjct: 159 ----------------------------------HAEDGDILPTVVPAGPDNPLGPFKFT 184 Query: 315 FYSR-NNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 H + + F +R + GC R+ N+++L + TP Sbjct: 185 LGVPGYLI--HGSNKK--FGIGMRT-SHGCFRMFNNNVLELSKMVPVGTP 229 >gi|298492482|ref|YP_003722659.1| peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] gi|298234400|gb|ADI65536.1| Peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] Length = 249 Score = 60.2 bits (145), Expect = 7e-07, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 7/72 (9%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 GWP L LGN V +L++ L G L S F E+AVK Q+R+GL Sbjct: 176 GWPI-----LRLGNRGSEVVKLQKLLQNLGFLKGSIDGD--FGITTEAAVKAAQIRYGLQ 228 Query: 153 PSGMVDSSTLEA 164 P G+ +T EA Sbjct: 229 PDGIAGGATWEA 240 Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ V L+ L + G + + + AV F+ GL+P G+VD+ Sbjct: 41 TLKVGSQGERVSELQAALKLLGFYTGA--VDGVYQEATARAVSQFKQAAGLNPDGVVDAI 98 Query: 161 TLEAM--NVP 168 T + + NV Sbjct: 99 TWQKLFPNVS 108 >gi|147679188|ref|YP_001213403.1| hypothetical protein PTH_2853 [Pelotomaculum thermopropionicum SI] gi|146275285|dbj|BAF61034.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 269 Score = 60.2 bits (145), Expect = 7e-07, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S V R+++RL G L + AV+ FQ+ +GL P G+V +T +A Sbjct: 77 GTSGDDVYRVQQRLSQWGYYTG--PLDGFYGYETFRAVQDFQINNGLPPDGVVGQATWDA 134 Query: 165 MNVPVDL 171 + + V Sbjct: 135 LGLSVPE 141 >gi|146296750|ref|YP_001180521.1| cell wall hydrolase, SleB [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410326|gb|ABP67330.1| cell wall hydrolase, SleB [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 226 Score = 60.2 bits (145), Expect = 7e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G++ V ++ RL G D + Y+ AV+ FQ ++GL G+ S TL Sbjct: 40 YGSTGSEVIEIQRRLKQWGYYDGPIDGIYGYKTYM--AVRYFQAKNGLKVDGIAGSETLR 97 Query: 164 AMNV 167 A+ + Sbjct: 98 ALGI 101 >gi|292670826|ref|ZP_06604252.1| endopeptidase [Selenomonas noxia ATCC 43541] gi|292647447|gb|EFF65419.1| endopeptidase [Selenomonas noxia ATCC 43541] Length = 246 Score = 59.8 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + +G+ V ++ +L G + G F AVK FQ +GL GM Sbjct: 47 VSAESFQIGDQGTDVAEIQGQLSSFGYDVVADGD---FGPATAEAVKEFQAANGLAVDGM 103 Query: 157 VDSSTLEAM 165 V T +A+ Sbjct: 104 VGPVTYQAL 112 >gi|121533822|ref|ZP_01665649.1| NLP/P60 protein [Thermosinus carboxydivorans Nor1] gi|121307813|gb|EAX48728.1| NLP/P60 protein [Thermosinus carboxydivorans Nor1] Length = 233 Score = 59.8 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%) Query: 95 PELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P P+ P L G + V L+ +L+ G ++ + F AV FQ GL+P Sbjct: 25 PVEPLPPILKPGMAGEEVAYLQAKLLELGYY--TEAVDGKFGIQTRLAVMRFQQATGLEP 82 Query: 154 SGMVDSSTLEAM 165 G+V + T +A+ Sbjct: 83 DGVVGALTWQAI 94 >gi|205373687|ref|ZP_03226490.1| hypothetical protein Bcoam_10670 [Bacillus coahuilensis m4-4] Length = 355 Score = 59.8 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 35/77 (45%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V++L+E LI G G + + + AV FQ +GL G+ T Sbjct: 202 LLFGDKGADVKKLQESLIRLGYPLTKFGADGDYGSETKQAVMNFQKANGLPVDGIAGIQT 261 Query: 162 LEAMNVPVDLRIRQLQV 178 ++ +N +D + ++ Sbjct: 262 MKKVNELLDAKKVTIEA 278 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 30/67 (44%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L +G+ +V L++ L G P G F E AVK Q +GL Sbjct: 116 PSTSNQNLSIGSVGSNVMMLQQNLQKLGYSLPKYGSDGTFGQETEDAVKQLQRDNGLIID 175 Query: 155 GMVDSST 161 G+V S+T Sbjct: 176 GIVGSNT 182 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL+ G+ V+ ++ LI G P G + A V+ FQ + L G+V + Sbjct: 40 PLNNGDRGDLVREVQNDLIKLGYSLPLYGADGFYGAETIQQVRKFQKDYYLTVDGIVGEN 99 Query: 161 TLEAM 165 T +A+ Sbjct: 100 TFKAL 104 Score = 42.5 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL-SVAFDAYVESAVKLFQMRH-GLDP 153 LP L G+ +V+++++ L DL + G + E AV+ FQ + L Sbjct: 281 PLPNVILKQGSEGNNVKQVQQALK---DLKLNVGTVDGIYGPKTEKAVRDFQSNYPTLKN 337 Query: 154 SGMVDSSTLEAM 165 G+ +T + M Sbjct: 338 DGIYGPNTRKYM 349 >gi|17228662|ref|NP_485210.1| lysin [Nostoc sp. PCC 7120] gi|17130513|dbj|BAB73124.1| lysin [Nostoc sp. PCC 7120] Length = 242 Score = 59.8 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+ V L+E LI DP + F E+AVK FQ R + P G+V+ Sbjct: 4 TETLRKGSKGSDVSELQEILIKLKF-DPGRIDGD-FGNKTEAAVKQFQQRQSITPDGVVE 61 Query: 159 SSTLEAMNVPVDLRIRQLQV 178 +T A+N + +I ++ Sbjct: 62 INTRNALNKAIQRQIEIAKL 81 >gi|296141898|ref|YP_003649141.1| cell wall hydrolase/autolysin [Tsukamurella paurometabola DSM 20162] gi|296030032|gb|ADG80802.1| cell wall hydrolase/autolysin [Tsukamurella paurometabola DSM 20162] Length = 395 Score = 59.8 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 11/75 (14%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGL-----------SVAFDAYVESAVKLFQMRHG 150 + LG+ +V +R L G L FD ++ A + FQ + G Sbjct: 4 ISLGDHGGAVAEIRGILADQGFLPDYVAPRELVSNGWTLPEAVFDRRLDHATRAFQQQRG 63 Query: 151 LDPSGMVDSSTLEAM 165 L G+V +T A+ Sbjct: 64 LLVDGVVGPATYRAL 78 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 8/87 (9%) Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSV----SVQRLRERLIISGDLDPSKGLSVAFDAYV 138 A Y+ + +L R L S+ V L+ RL G + + F Sbjct: 73 ATYRALREST--YQLGARTLSYIASAPPSGDDVAALQARLQNLGFY--AGMIDGLFGPQT 128 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + +Q GL G+ +TL ++ Sbjct: 129 HLGLSAYQREFGLVADGICGPATLRSL 155 >gi|120404350|ref|YP_954179.1| peptidoglycan binding domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119957168|gb|ABM14173.1| Peptidoglycan-binding domain 1 protein [Mycobacterium vanbaalenii PYR-1] Length = 283 Score = 59.8 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 7/78 (8%) Query: 95 PELPIRP-----LHLGNSSVSVQRLRERL-IISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 P +P+ L+ G V L+ RL + F ESAV+ FQ R Sbjct: 199 PPVPVGEYADVLLYRGVRGPQVAELQRRLRYAYASYAGGLEIDGVFGPETESAVREFQRR 258 Query: 149 H-GLDPSGMVDSSTLEAM 165 GL G+V +T A+ Sbjct: 259 TPGLKVDGVVGPATAAAL 276 >gi|239828434|ref|YP_002951058.1| NLP/P60 protein [Geobacillus sp. WCH70] gi|239808727|gb|ACS25792.1| NLP/P60 protein [Geobacillus sp. WCH70] Length = 454 Score = 59.8 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 L L +G+ V +L+++L G ++ + + AV+ FQ ++ L + Sbjct: 176 KTLQANALKIGSRGTEVSKLQQKLKQLGYFT-YPEITDYYGTFTAEAVRKFQEKNKLPVT 234 Query: 155 GMVDSSTLEAMN 166 G+ DS+TL +N Sbjct: 235 GVADSATLAKIN 246 Score = 54.5 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + +G+ +V+ L++ L + G ++ + + AVK FQ +GL +G+ Sbjct: 100 STAEMKIGSRGNNVKVLQQNLKLLGYF-RYPEITGYYGVITQEAVKKFQRNNGLSATGVA 158 Query: 158 DSSTLEAM-NVPVDLRIRQLQVNL 180 D+ T++ + N + LQ N Sbjct: 159 DARTVQLIQNAVNKQSNKTLQANA 182 Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +G SS ++ L++ L G + F E AVK FQ L +G+VD +T Sbjct: 33 KVGMSSPQIKELQQLLKEKGFFT-YPTATGYFGTITEQAVKAFQASVRLPVTGIVDDATY 91 Query: 163 EAMNVPVDLRIR 174 + Sbjct: 92 AKLKGAAASTAE 103 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ V+ ++ +L G S+ ++ + +AVK FQ L +G+VD+ T Sbjct: 265 LTTGSTGSEVKEVQTKLKQLGYFTYSQ-ITGYYGTITANAVKSFQRDVNLKATGVVDTET 323 Query: 162 LEAMNVPVDLR 172 E + R Sbjct: 324 YERLMGKAPQR 334 >gi|34497388|ref|NP_901603.1| hypothetical protein CV_1933 [Chromobacterium violaceum ATCC 12472] gi|34103244|gb|AAQ59607.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 301 Score = 59.8 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 39/165 (23%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 R++++N+P A L ++GK+ V VG++ QTP I I P W +P+SI Q+ Sbjct: 35 RHLVLNLPQARLFLYQDGKLARIFPVAVGKMLTQTPTGSFDITGIYRAPSWHVPKSI-QE 93 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 +M GKEV + R G+ +++ Sbjct: 94 EM-------------------RRSGKEVQTVVPPGPNNPLGPVFVR--FGE-SSLGLG-- 129 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 H T P +V F + GCVR+ + ++L + Sbjct: 130 ---------FHGTNAPG---SVPGFRSHGCVRLRNDDALELARTV 162 >gi|294787984|ref|ZP_06753228.1| ErfK/YbiS/YcfS/YnhG family protein [Simonsiella muelleri ATCC 29453] gi|294484277|gb|EFG31960.1| ErfK/YbiS/YcfS/YnhG family protein [Simonsiella muelleri ATCC 29453] Length = 378 Score = 59.8 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 58/186 (31%), Gaps = 43/186 (23%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 YVL+NIP L NG + V VG+ QT + +I ++P W IP+SI + Sbjct: 19 YVLINIPQQRLFLFNNGALEKVYPVAVGKAMTQTNLGEHKIGGKAYDPTWHIPKSIQAEM 78 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 V P +F + ++ Sbjct: 79 KTPQ-------------------------TSVPPGPNNPLGPVFVRLGNPKLSLG----- 108 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTPTWSRYHIEEVV 372 +H T P N+V + GCVR+ +D + + Y + + Sbjct: 109 --------IHGTNAP---NSVPGVRSHGCVRMKSEQALDFARTITTGSDALVGYEMAALN 157 Query: 373 KTRKTT 378 K Sbjct: 158 VDGKNQ 163 >gi|119488463|ref|ZP_01621636.1| hypothetical protein L8106_23835 [Lyngbya sp. PCC 8106] gi|119455274|gb|EAW36414.1| hypothetical protein L8106_23835 [Lyngbya sp. PCC 8106] Length = 238 Score = 59.8 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 17/101 (16%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 + S+ + + I Y L G V L++RL I G DP + Sbjct: 65 LFSEPFYEGSSQPIRRY---------------TLEPGTRGTQVTGLQQRLQIHGF-DPGR 108 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 S F + E AV+ FQ GL+ +G+VD T + + Sbjct: 109 VDS-VFGSRTEQAVRAFQQARGLEVNGIVDRGTWKLLETTP 148 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 33/120 (27%) Query: 77 QTEKAIAFYQD--------ILSRGGWPELPIRP-----------------------LHLG 105 +TE+A+ +Q I+ RG W L P L G Sbjct: 116 RTEQAVRAFQQARGLEVNGIVDRGTWKLLETTPRPVATAPRPVETAPRPVAVAQEVLTKG 175 Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V+ L+ RL I G + F + ++AV +Q GL+ +G+VD T A+ Sbjct: 176 TKGSKVRTLQTRLEIKGF--DPGPVDGVFGSRTQAAVIAYQQTKGLEVNGVVDEQTWVAL 233 >gi|302865629|ref|YP_003834266.1| peptidase M15A [Micromonospora aurantiaca ATCC 27029] gi|302568488|gb|ADL44690.1| Peptidase M15A [Micromonospora aurantiaca ATCC 27029] Length = 259 Score = 59.8 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G S V++L+ R+ + + +AVK FQ +GL G+ Sbjct: 41 RMLSQGQSGSDVRQLQIRVAGWAAYGGIVRVDGVYGPETAAAVKRFQAAYGLRADGVAGP 100 Query: 160 STLE 163 T Sbjct: 101 KTFA 104 >gi|295704404|ref|YP_003597479.1| autolytic lysozyme [Bacillus megaterium DSM 319] gi|294802063|gb|ADF39129.1| autolytic lysozyme [Bacillus megaterium DSM 319] Length = 298 Score = 59.8 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ + V+++++ L+ G P G + + +AVK FQ R+GL G+ + TL Sbjct: 227 GDRGLGVKQIQQNLLALGFSLPKFGADGFYGDELIAAVKKFQNRYGLFSDGIAGADTL 284 >gi|269104415|ref|ZP_06157111.1| hypothetical protein VDA_000572 [Photobacterium damselae subsp. damselae CIP 102761] gi|268161055|gb|EEZ39552.1| hypothetical protein VDA_000572 [Photobacterium damselae subsp. damselae CIP 102761] Length = 300 Score = 59.8 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 61/183 (33%), Gaps = 43/183 (23%) Query: 189 QKMGLRYVLVNIPAASLEAV--ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + V +N+ L ++ + +GRV R+TP + + I++ + +P W Sbjct: 87 PNVPHNGVTINLAELRLYYFPKDDPSKVYVFPIGIGRVGRETPSMTTSISQKIRHPTWT- 145 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P + I+K+ A G N Sbjct: 146 PTANIRKEYAAK----------------------------------GVTLPPVVAAGPNN 171 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 + + + Y +H T + F +R +SGC+R+ N D+ WL P + Sbjct: 172 PLGDYAMRLAYGHGEYLIHSTNKD--FGIGMR-VSSGCIRM-NPWDI-EWLFPQIPKGTP 226 Query: 366 YHI 368 I Sbjct: 227 VRI 229 >gi|153868406|ref|ZP_01998357.1| hypothetical protein BGS_0497 [Beggiatoa sp. SS] gi|152144274|gb|EDN71643.1| hypothetical protein BGS_0497 [Beggiatoa sp. SS] Length = 147 Score = 59.8 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 5/119 (4%) Query: 50 DRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW--PELPIRPLHLGNS 107 ++ + R+ + +S +T +AI Y W P LP+ L +G S Sbjct: 18 KQYLVVVTRLQNNVA--TLALSGQTFEFPIEAINEYWLGQFLVLWQPPTLPVPVLQVGIS 75 Query: 108 SVSVQRLRERL-IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + SV +R+ L I G LS FD + V FQ + LDP G+V TL A+ Sbjct: 76 NESVIWIRKLLDEIEGLRGEPHTLSPLFDYALRRRVIAFQRQQKLDPDGIVGEQTLLAL 134 >gi|138896743|ref|YP_001127196.1| cell wall lytic activity [Geobacillus thermodenitrificans NG80-2] gi|134268256|gb|ABO68451.1| Cell wall lytic activity [Geobacillus thermodenitrificans NG80-2] Length = 627 Score = 59.8 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R L +G V+ L++RL G ++ F E+AVK FQ +GL +G Sbjct: 98 TARTLSVGMRGDDVKVLQQRLKQLGYFK-YPEITGYFGTVTEAAVKQFQQANGLKVTGKA 156 Query: 158 DSSTLEAMNVPVDLRI 173 D+ T+E + + Sbjct: 157 DAVTIERLRQAASKQA 172 Score = 56.8 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ V L++ L + G + + AV+ FQ +GL +G VDS+T Sbjct: 182 LKIGSRGSEVSELQKNLKLLGYFT-YPTATGYYGTITADAVRRFQKDNGLPATGSVDSTT 240 Query: 162 L 162 L Sbjct: 241 L 241 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G V++++ L G ++ + AV+ FQ +GL +G VDS+T Sbjct: 265 LKIGTRGEKVKQVQTNLKQLGYFT-YPEITGYYGTITADAVRRFQKDNGLPVTGSVDSTT 323 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 4/99 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G V+R++ +L G ++ + AV+ FQ L +G+VDS T Sbjct: 431 LTIGTRGEEVKRVQTKLKQLGYFT-YPEITGYYGTITADAVRRFQKDAKLQANGIVDSQT 489 Query: 162 LEAM--NVPVDL-RIRQLQVNLMRIKKLLEQKMGLRYVL 197 E + P + ++++M + + +G YV Sbjct: 490 YERLIGQAPASKGQASASKLDVMELIADAAELLGKPYVW 528 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +G SS V+ L++ L G + F E AV+ FQ L +G+VD +T Sbjct: 31 KVGMSSSKVKELQQLLKEKGFFSYPQATG-YFGPITEEAVRAFQKAANLPVTGVVDDATY 89 Query: 163 EAM 165 + Sbjct: 90 AKL 92 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G V++++ L G ++ + AV+ FQ +GL +G VDS+T Sbjct: 348 LKTGTRGEKVKQVQTNLKQLGYFT-YPEITGYYGTITADAVRRFQKDNGLPVTGSVDSTT 406 >gi|322384552|ref|ZP_08058232.1| spore cortex-lytic enzyme-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150607|gb|EFX44084.1| spore cortex-lytic enzyme-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 216 Score = 59.8 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 57/148 (38%), Gaps = 34/148 (22%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L++G S V L+ERL G KG++ + + AV+ FQ +GL +G DS+ Sbjct: 31 TLNIGTQSEHVLNLQERLSSLGYFK--KGITGYYGKITKEAVRDFQKAYGLSVTGSADSA 88 Query: 161 TLEAMN---VPVDLRIRQLQVNLMRIKKLLEQKMGLRY---VLVNIPAASLEAVENGKVG 214 TL +N + + QL + + + G + V V G V Sbjct: 89 TLAKLNQMAGSKQITLDQLA------RIIYAEARGESFKGQVAV------------GAVV 130 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNP 242 L V Q+ I ++F P Sbjct: 131 LN-RV-------QSNAFPDSITEVIFQP 150 >gi|315502176|ref|YP_004081063.1| peptidase m15a [Micromonospora sp. L5] gi|315408795|gb|ADU06912.1| Peptidase M15A [Micromonospora sp. L5] Length = 259 Score = 59.8 bits (144), Expect = 8e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G S V++L+ R+ + + +AVK FQ +GL G+ Sbjct: 41 RMLSQGQSGSDVRQLQIRVAGWAAYGGIVRVDGVYGPETAAAVKRFQAAYGLRADGVAGP 100 Query: 160 STLE 163 T Sbjct: 101 KTFA 104 >gi|308068719|ref|YP_003870324.1| spore cortex-lytic enzyme precursor (Germination-specific amidase) [Paenibacillus polymyxa E681] gi|305857998|gb|ADM69786.1| Spore cortex-lytic enzyme precursor (Germination-specific amidase) [Paenibacillus polymyxa E681] Length = 283 Score = 59.8 bits (144), Expect = 9e-07, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 3/83 (3%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 ++ P + G+ V L+ RL + G + F + AVK FQ Sbjct: 44 AAQPSQPTFSSGAVDFGSYGQDVYELQSRLKLLGFF--GGKVDSHFGSSTLKAVKGFQKE 101 Query: 149 HGLDPSGMVDSST-LEAMNVPVD 170 G+ P G+V T L+ +N + Sbjct: 102 FGIRPDGVVGPKTKLKLVNATPN 124 >gi|196249438|ref|ZP_03148136.1| NLP/P60 protein [Geobacillus sp. G11MC16] gi|196211195|gb|EDY05956.1| NLP/P60 protein [Geobacillus sp. G11MC16] Length = 544 Score = 59.8 bits (144), Expect = 9e-07, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R L +G V+ L++RL G ++ F E+AVK FQ +GL +G Sbjct: 98 TARTLSVGMRGDDVKVLQQRLKQLGYFK-YPEITGYFGTVTEAAVKQFQQANGLKVTGKA 156 Query: 158 DSSTLEAM 165 D+ T+E + Sbjct: 157 DAVTIERL 164 Score = 57.2 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ V L++ L + G + + AV+ FQ +GL +G VDS+ Sbjct: 181 TLKIGSRGSEVSELQKNLKLLGYFT-YPTATGYYGTITADAVRRFQKDNGLPATGSVDST 239 Query: 161 TL 162 TL Sbjct: 240 TL 241 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G V++++ L G ++ + AV+ FQ +GL +G VDS+T Sbjct: 265 LKIGTRGEKVKQVQTNLKQLGYFT-YPEITGYYGTITADAVRRFQKDNGLPVTGSVDSTT 323 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +G SS V+ L++ L G + F E AV+ FQ L +G+VD +T Sbjct: 31 KVGMSSSKVKELQQLLKEKGFFSYPQATG-YFGPITEEAVRAFQKAANLPVTGVVDDATY 89 Query: 163 EAM 165 + Sbjct: 90 AKL 92 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 4/99 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G V++++ L G ++ + AV+ FQ L +G+VDS T Sbjct: 348 LKTGTRGEKVKQVQTNLKQLGYFT-YPEITGYYGTITADAVRRFQKDAKLQANGIVDSQT 406 Query: 162 LEAM--NVPVDL-RIRQLQVNLMRIKKLLEQKMGLRYVL 197 E + P + ++++M + + +G YV Sbjct: 407 YERLIGQAPASKGQASASKLDVMELIADAAELLGKPYVW 445 >gi|158319047|ref|YP_001511555.1| cell wall hydrolase/autolysin [Frankia sp. EAN1pec] gi|158114452|gb|ABW16649.1| cell wall hydrolase/autolysin [Frankia sp. EAN1pec] Length = 409 Score = 59.8 bits (144), Expect = 9e-07, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 36/103 (34%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK------------------------------ 128 ++ L LG+ SV R I G L + Sbjct: 1 MKLLRLGDRDPSVAEARAAFIHLGFLPVAPRQTDAADGPGPGALETSTATGTGPSPAGDA 60 Query: 129 ------GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + FD +++AV+ FQ GL G++ T A+ Sbjct: 61 GNGGPVDATDQFDNELDNAVRAFQQSRGLSVDGIIGPDTFRAI 103 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 48/128 (37%), Gaps = 25/128 (19%) Query: 48 VNDRFDNFLARVDMGID-----SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL 102 D+FDN L S II +T E+A L R L Sbjct: 68 ATDQFDNELDNAVRAFQQSRGLSVDGIIGPDTFRAIEEARRR------------LGDRLL 115 Query: 103 HLGNSSV----SVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 H + V L+ERL G D+ + G F A +SAV+ FQ GLDP G+ Sbjct: 116 HYSVTHPFVGDDVAALQERLSNMGFDVGRADG---IFGARTDSAVRDFQRNRGLDPDGLC 172 Query: 158 DSSTLEAM 165 TL + Sbjct: 173 GPRTLREL 180 >gi|322421011|ref|YP_004200234.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. M18] gi|320127398|gb|ADW14958.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. M18] Length = 303 Score = 59.8 bits (144), Expect = 9e-07, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 58/195 (29%), Gaps = 48/195 (24%) Query: 185 KLLEQ--KMGLRYVLVNIPAASLEAV--ENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 + + V+VN+ L ++ L + +G TP+ I Sbjct: 92 WIPPAVSESERPSVVVNLAELRLFLFPKDSRSDILSFPIGIGDEGTDTPVGTYHIIEKTV 151 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 +PYW +P+SI ++ P Sbjct: 152 SPYWRVPKSIRRQ---------------------------------------RPELPGVV 172 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 PG N + S + SR++ +H T P + GC+R+ D+ + + Sbjct: 173 PPGPENPLGSHALRL-SRDSILIHGTNRPWGVGRRS---SHGCLRL-YPEDIAELFQRVS 227 Query: 361 PTWSRYHIEEVVKTR 375 I + VK Sbjct: 228 KGMRVTIINQPVKIG 242 >gi|78222403|ref|YP_384150.1| peptidoglycan binding domain-containing protein [Geobacter metallireducens GS-15] gi|78193658|gb|ABB31425.1| Peptidoglycan-binding domain 1 [Geobacter metallireducens GS-15] Length = 321 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 G++ V+ ++ RL G F ESAVK FQ ++GLD G+V Sbjct: 2 TNAYRRGSTGAEVKTIQTRLAGLGLYSG--DTDGIFGGGTESAVKNFQRKNGLDVDGIVG 59 Query: 159 SSTLEAM 165 T + + Sbjct: 60 EDTWKKL 66 >gi|295705989|ref|YP_003599064.1| putative cell wall endopeptidase [Bacillus megaterium DSM 319] gi|294803648|gb|ADF40714.1| putative cell wall endopeptidase [Bacillus megaterium DSM 319] Length = 231 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G ++ V++++ L G L +S F+ + AV FQ +H L+ G+V +T Sbjct: 37 LKQGMTNDDVEQVKTVLKDKGFLKGE--VSRYFNYETKKAVMAFQEKHNLEADGVVGENT 94 Query: 162 LEAM 165 A+ Sbjct: 95 YNAL 98 >gi|294500636|ref|YP_003564336.1| putative cell wall endopeptidase [Bacillus megaterium QM B1551] gi|294350573|gb|ADE70902.1| putative cell wall endopeptidase [Bacillus megaterium QM B1551] Length = 224 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G ++ V++++ L G L +S F+ + AV FQ +H L+ G+V +T Sbjct: 30 LKQGMTNDDVEQVKTVLKDKGFLKGE--VSRYFNYETKKAVMAFQEKHNLEADGVVGENT 87 Query: 162 LEAM 165 A+ Sbjct: 88 YNAL 91 >gi|238757747|ref|ZP_04618930.1| hypothetical protein yaldo0001_35040 [Yersinia aldovae ATCC 35236] gi|238703990|gb|EEP96524.1| hypothetical protein yaldo0001_35040 [Yersinia aldovae ATCC 35236] Length = 351 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 70/208 (33%), Gaps = 47/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L +++N+ L G+ + + +G++ R TP + + +++ + NP W Sbjct: 91 MLLPDTPREGIVINLAELRLYYYPKGQNKVIVYPIGIGQLGRNTPTMTTSVSQKIPNPTW 150 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + I+K +A P + G Sbjct: 151 T-PTANIRKHYLAQGVTLPSVV----------------------------------PAGP 175 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + Y +H T F +R +SGC+R+ D+ L P Sbjct: 176 ENPMGLFAMRLAAGRGEYLIHGTNAN--FGIGMR-VSSGCIRL-RPDDI-QALFSTVPKG 230 Query: 364 SRYHI-----EEVVKTRKTTPVKLATEV 386 +R I + V+ V++ + Sbjct: 231 TRVQIVNEPVKYSVEPDGKRYVEVHQPL 258 >gi|330503579|ref|YP_004380448.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas mendocina NK-01] gi|328917865|gb|AEB58696.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas mendocina NK-01] Length = 318 Score = 59.5 bits (143), Expect = 9e-07, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 57/171 (33%), Gaps = 46/171 (26%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L G+ V + +GR +P+ R+ NP W P+SI +++ Sbjct: 100 IVINLAEYRLYYFPKGQNVVHTFPLGIGREGWGSPLGVGRVTVKTPNPAWYPPKSI-REE 158 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ + PG N + K+ Sbjct: 159 ----------------------------------HAADGDILPTVVPPGPDNPLGPYKMT 184 Query: 315 --FYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 F H + + F +R + GC R+ N+++L + TP Sbjct: 185 LSFP-GYLI--HGSNKK--FGIGMR-VSHGCFRMLNHNVLELADMVPVGTP 229 >gi|290967759|ref|ZP_06559312.1| NlpC/P60 family protein [Megasphaera genomosp. type_1 str. 28L] gi|290782118|gb|EFD94693.1| NlpC/P60 family protein [Megasphaera genomosp. type_1 str. 28L] Length = 323 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 21/106 (19%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA----- 164 V+ +++ L+ G + + F E A++ FQ R GL G++ T A Sbjct: 120 EVRTIQQALVRQGY---AVDVDGVFGPGTEQALRRFQARRGLTVDGVIGPETFYALTGQV 176 Query: 165 -------------MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 +NV R + R+ + ++ MG YV Sbjct: 177 LASGSVHVGNTAELNVAPTGSARSASATVRRLLGVAQRYMGTPYVF 222 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 6/76 (7%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 H G+ + +++ L+ G G + A + A++ FQ +HG+ G++ + T Sbjct: 25 FHPGDRGTQITEIQQALVKQGMHLAVDGD---YGADTQEAIRTFQKKHGIYADGVMGAKT 81 Query: 162 LEAM---NVPVDLRIR 174 + N+P + IR Sbjct: 82 YAVLMKKNMPENKTIR 97 >gi|311032631|ref|ZP_07710721.1| putative muramoyl-pentapeptide carboxypeptidase [Bacillus sp. m3-13] Length = 240 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 7/81 (8%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLF 145 S W R L G+S V+ L+ R+ P + + F ++AV F Sbjct: 29 ASAYNW----TRTLSEGSSGTDVRELQIRVAGWAADSPQQTVVSVDGQFGPGTKAAVIRF 84 Query: 146 QMRHGLDPSGMVDSSTLEAMN 166 Q +GL G+V T +N Sbjct: 85 QRAYGLTADGVVGPQTQAKLN 105 >gi|238749439|ref|ZP_04610944.1| hypothetical protein yrohd0001_27560 [Yersinia rohdei ATCC 43380] gi|238712094|gb|EEQ04307.1| hypothetical protein yrohd0001_27560 [Yersinia rohdei ATCC 43380] Length = 351 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 70/208 (33%), Gaps = 47/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L +++N+ L ++ + + +G++ R TP + + +++ + NP W Sbjct: 91 MLLPDTPREGIVINLAELRLYYYPKDQNKVVVYPIGIGQLGRNTPTMTTSVSQKIPNPTW 150 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + I+K YL E G Sbjct: 151 T-PTANIRK----------HYLA------------------------EGVTLPAVVPAGP 175 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + Y +H T F +R +SGC+R+ D+ L K P Sbjct: 176 ENPMGLFAMRLAAGGGEYLIHGTNAN--FGIGMR-VSSGCIRL-RPDDI-EALFKSVPKG 230 Query: 364 SRYHI-----EEVVKTRKTTPVKLATEV 386 +R I + V+ V++ + Sbjct: 231 TRVQIINEPVKYSVEPDGKRYVEVHQPL 258 >gi|51894094|ref|YP_076785.1| spore cortex-lytic enzyme precursor [Symbiobacterium thermophilum IAM 14863] gi|51857783|dbj|BAD41941.1| spore cortex-lytic enzyme precursor [Symbiobacterium thermophilum IAM 14863] Length = 237 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V + RL G + + AV LFQ R+GL G+V Sbjct: 42 TLRWGSRGSDVCLAQRRLKAWGYYRGE--VDCIYGRLTYEAVTLFQRRNGLTVDGIVGPD 99 Query: 161 TLEAM 165 T A+ Sbjct: 100 TWAAL 104 >gi|17229661|ref|NP_486209.1| hypothetical protein alr2169 [Nostoc sp. PCC 7120] gi|17131260|dbj|BAB73868.1| alr2169 [Nostoc sp. PCC 7120] Length = 160 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 E I Y+ + + + L G+ V+ L++RL +G F Sbjct: 68 EDGIVGYKTWQALYEGRVIDLPILKYGSQGELVKALQQRLQNAGYYTGLVDGD--FSLVT 125 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAM-NVP 168 E+ VK FQ+R+ L G+V T + N P Sbjct: 126 EAGVKSFQLRNNLKVDGIVGDRTWAVLSNTP 156 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G++ V+ L +RL+ S S + D+ V LFQ R + G+V Sbjct: 18 TLKQGDTGEVVKEL-QRLLRS-YYCYSGPIDGVLDSETVGGVILFQHRVFIPEDGIVGYK 75 Query: 161 TLEAM 165 T +A+ Sbjct: 76 TWQAL 80 >gi|331268737|ref|YP_004395229.1| spore-cortex-lytic enzyme [Clostridium botulinum BKT015925] gi|329125287|gb|AEB75232.1| spore-cortex-lytic enzyme [Clostridium botulinum BKT015925] Length = 221 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + G V ++ RL D ++ Y+ AVK FQ ++ L G Sbjct: 17 AIKTSVYKYGTKDSIVTEIQRRLKAWDYYDGELDGKYGYETYL--AVKEFQRKNDLTVDG 74 Query: 156 MVDSSTLEAMNV 167 +V TL ++ + Sbjct: 75 IVGDDTLASLGI 86 >gi|282866653|ref|ZP_06275695.1| Peptidase M15A [Streptomyces sp. ACTE] gi|282558555|gb|EFB64115.1| Peptidase M15A [Streptomyces sp. ACTE] Length = 245 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G + V +L+ R+ + + ++ +AVK FQ +GL G+ Sbjct: 39 TRTLSSGATGNDVTQLQIRVAGYPGYNSVLAVDGSYGPATTAAVKRFQAAYGLAADGVAG 98 Query: 159 SSTLEAM 165 +T + Sbjct: 99 PATQAKL 105 >gi|282600699|ref|ZP_06257697.1| putative cell wall lytic activity [Subdoligranulum variabile DSM 15176] gi|282571458|gb|EFB76993.1| putative cell wall lytic activity [Subdoligranulum variabile DSM 15176] Length = 508 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLR---ERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 S G WP + L G++ V++++ L P+ + F A E AVK+FQ Sbjct: 49 SSGSWPGV---VLKRGSTGSEVEQVQFWLSELAQFNSALPALTVDGNFGAATERAVKIFQ 105 Query: 147 MRHGLDPSGMVDSSTLEAM 165 GL G+V +T EA+ Sbjct: 106 QEQGLTADGVVGQATWEAL 124 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 9/127 (7%) Query: 48 VNDRFDNFLARVDMGIDSDIPIISKETIAQTEK------AIAFYQDILSRGGWPELPIRP 101 V+ F R G S + + + + A+A +I+ P Sbjct: 176 VDGNFGASTQRAVTGFQSLFGLTADGLVGRATWNKLNEVALAVANEIVEPNVAPGQFTTT 235 Query: 102 LHLGNSSVSVQRLR---ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + GN +V+ ++ RL PS + F + AVK +Q R GL G+V Sbjct: 236 VREGNRGTTVRAVQYYLRRLSAYYSDIPSVTVDGVFGSATTKAVKAWQARAGLTVDGVVG 295 Query: 159 SSTLEAM 165 T ++ Sbjct: 296 RLTWNSL 302 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 13/144 (9%) Query: 32 HASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 S L + + V+ F R + + + + Q A Y L Sbjct: 73 WLSELAQFNSALPALTVDGNFGAATERAVKIFQQEQGLTADGVVGQATWE-ALYSAWLDM 131 Query: 92 ----GG--WPELPIRPLHLGNSSVSVQRLR--ERLIISGDLD-PSKGLSVAFDAYVESAV 142 GG WP + L G++ + V+ ++ RL + + F A + AV Sbjct: 132 QSDLGGTAWPGI---VLRRGDTGMEVRLVQFWLRLAAENYSALAAVSVDGNFGASTQRAV 188 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMN 166 FQ GL G+V +T +N Sbjct: 189 TGFQSLFGLTADGLVGRATWNKLN 212 Score = 43.7 bits (102), Expect = 0.056, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 6/83 (7%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS---KGLSVAFDAYVESAVKLFQMR 148 G WP L LG+S +V +++ L + +D + FD ++A++ +Q+ Sbjct: 418 GIWP---ASALTLGSSGPAVLQVQRWLNLIASVDQGYSFVPETGDFDDATQNALENYQLT 474 Query: 149 HGLDPSGMVDSSTLEAMNVPVDL 171 GL G+VD++T E++ + Sbjct: 475 AGLPTLGVVDAATWESLRTAAEA 497 >gi|183179739|ref|ZP_02957950.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|183013150|gb|EDT88450.1| conserved hypothetical protein [Vibrio cholerae MZO-3] Length = 305 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 66/197 (33%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L N V +GR+ R TP++ + I+ P W P SI +K+ Sbjct: 95 IVINLAELRLYYFRPNEGKVHIFPVGIGRIGRDTPVMQTSISSKRKYPTWTPPASI-RKE 153 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 K K + + V G N + + Sbjct: 154 Y---------------------KAKGIDLPPVV-------------PAGPENPLGDYAMR 179 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y +H T + F +R ++GC+R+ + D+ WL + + I Sbjct: 180 LAYGSGEYLIHGTNKD--FGVGMR-VSAGCIRM-DPKDI-EWLYQQVERGEKVRI----- 229 Query: 374 TRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 230 INEPIKVALEPDRSVFI 246 >gi|294499079|ref|YP_003562779.1| autolytic lysozyme [Bacillus megaterium QM B1551] gi|294349016|gb|ADE69345.1| autolytic lysozyme [Bacillus megaterium QM B1551] Length = 298 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ + V+++++ L+ G P G + + +AVK FQ R+GL G+ + TL Sbjct: 227 GDRGLGVKQIQQNLLALGFSLPKFGADGFYGDELIAAVKKFQNRYGLFSDGIAGADTL 284 >gi|153212801|ref|ZP_01948437.1| conserved hypothetical protein [Vibrio cholerae 1587] gi|124116314|gb|EAY35134.1| conserved hypothetical protein [Vibrio cholerae 1587] Length = 306 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 66/197 (33%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L N V +GR+ R TP++ + I+ P W P SI +K+ Sbjct: 95 IVINLAELRLYYFRPNEGKVHIFPVGIGRIGRDTPVMQTSISSKRKYPTWTPPASI-RKE 153 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 K K + + V G N + + Sbjct: 154 Y---------------------KAKGIDLPPVV-------------PAGPENPLGDYAMR 179 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y +H T + F +R ++GC+R+ + D+ WL + + I Sbjct: 180 LAYGSGEYLIHGTNKD--FGVGMR-VSAGCIRM-DPKDI-EWLYQQVERGEKVRI----- 229 Query: 374 TRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 230 INEPIKVALEPDRSVFI 246 >gi|15600829|ref|NP_232459.1| hypothetical protein VCA0058 [Vibrio cholerae O1 biovar eltor str. N16961] gi|121585891|ref|ZP_01675684.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121730222|ref|ZP_01682608.1| conserved hypothetical protein [Vibrio cholerae V52] gi|147671464|ref|YP_001214920.1| hypothetical protein VC0395_0079 [Vibrio cholerae O395] gi|153820063|ref|ZP_01972730.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|153827505|ref|ZP_01980172.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|227811686|ref|YP_002811696.1| hypothetical protein VCM66_A0055 [Vibrio cholerae M66-2] gi|229506766|ref|ZP_04396275.1| hypothetical protein VCF_001990 [Vibrio cholerae BX 330286] gi|229510439|ref|ZP_04399919.1| hypothetical protein VCE_001845 [Vibrio cholerae B33] gi|229514568|ref|ZP_04404029.1| hypothetical protein VCB_002218 [Vibrio cholerae TMA 21] gi|229517430|ref|ZP_04406875.1| hypothetical protein VCC_001453 [Vibrio cholerae RC9] gi|229522730|ref|ZP_04412146.1| hypothetical protein VIF_003296 [Vibrio cholerae TM 11079-80] gi|229526305|ref|ZP_04415709.1| hypothetical protein VCA_000424 [Vibrio cholerae bv. albensis VL426] gi|229527953|ref|ZP_04417344.1| hypothetical protein VCG_001031 [Vibrio cholerae 12129(1)] gi|229605240|ref|YP_002875944.1| hypothetical protein VCD_000180 [Vibrio cholerae MJ-1236] gi|254284784|ref|ZP_04959751.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|254850325|ref|ZP_05239675.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255746115|ref|ZP_05420062.1| hypothetical protein VCH_002489 [Vibrio cholera CIRS 101] gi|262158602|ref|ZP_06029716.1| hypothetical protein VIG_001835 [Vibrio cholerae INDRE 91/1] gi|262168986|ref|ZP_06036680.1| hypothetical protein VIJ_002194 [Vibrio cholerae RC27] gi|297579802|ref|ZP_06941729.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|298499923|ref|ZP_07009729.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9657441|gb|AAF95972.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549827|gb|EAX59847.1| conserved hypothetical protein [Vibrio cholerae 2740-80] gi|121628026|gb|EAX60576.1| conserved hypothetical protein [Vibrio cholerae V52] gi|126509398|gb|EAZ71992.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457] gi|146313847|gb|ABQ18387.1| conserved hypothetical protein [Vibrio cholerae O395] gi|149738568|gb|EDM52923.1| conserved hypothetical protein [Vibrio cholerae MZO-2] gi|150425569|gb|EDN17345.1| conserved hypothetical protein [Vibrio cholerae AM-19226] gi|227010828|gb|ACP07039.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|227014690|gb|ACP10899.1| conserved hypothetical protein [Vibrio cholerae O395] gi|229334315|gb|EEN99800.1| hypothetical protein VCG_001031 [Vibrio cholerae 12129(1)] gi|229336463|gb|EEO01481.1| hypothetical protein VCA_000424 [Vibrio cholerae bv. albensis VL426] gi|229340715|gb|EEO05721.1| hypothetical protein VIF_003296 [Vibrio cholerae TM 11079-80] gi|229345466|gb|EEO10439.1| hypothetical protein VCC_001453 [Vibrio cholerae RC9] gi|229348548|gb|EEO13506.1| hypothetical protein VCB_002218 [Vibrio cholerae TMA 21] gi|229352884|gb|EEO17824.1| hypothetical protein VCE_001845 [Vibrio cholerae B33] gi|229357117|gb|EEO22035.1| hypothetical protein VCF_001990 [Vibrio cholerae BX 330286] gi|229371726|gb|ACQ62148.1| hypothetical protein VCD_000180 [Vibrio cholerae MJ-1236] gi|254846030|gb|EET24444.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255735869|gb|EET91267.1| hypothetical protein VCH_002489 [Vibrio cholera CIRS 101] gi|262022685|gb|EEY41392.1| hypothetical protein VIJ_002194 [Vibrio cholerae RC27] gi|262029482|gb|EEY48132.1| hypothetical protein VIG_001835 [Vibrio cholerae INDRE 91/1] gi|297535448|gb|EFH74282.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297541904|gb|EFH77955.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|327485292|gb|AEA79698.1| hypothetical protein VCLMA_B0050 [Vibrio cholerae LMA3894-4] Length = 306 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 66/197 (33%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L N V +GR+ R TP++ + I+ P W P SI +K+ Sbjct: 95 IVINLAELRLYYFRPNEGKVHIFPVGIGRIGRDTPVMQTSISSKRKYPTWTPPASI-RKE 153 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 K K + + V G N + + Sbjct: 154 Y---------------------KAKGIDLPPVV-------------PAGPENPLGDYAMR 179 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y +H T + F +R ++GC+R+ + D+ WL + + I Sbjct: 180 LAYGSGEYLIHGTNKD--FGVGMR-VSAGCIRM-DPKDI-EWLYQQVERGEKVRI----- 229 Query: 374 TRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 230 INEPIKVALEPDRSVFI 246 >gi|167037751|ref|YP_001665329.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040445|ref|YP_001663430.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter sp. X514] gi|256752473|ref|ZP_05493331.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus CCSD1] gi|289578529|ref|YP_003477156.1| peptidoglycan-binding protein [Thermoanaerobacter italicus Ab9] gi|297544804|ref|YP_003677106.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|300914496|ref|ZP_07131812.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X561] gi|307724268|ref|YP_003904019.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X513] gi|320116165|ref|YP_004186324.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|326389918|ref|ZP_08211481.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus JW 200] gi|166854685|gb|ABY93094.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X514] gi|166856585|gb|ABY94993.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748675|gb|EEU61721.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus CCSD1] gi|289528242|gb|ADD02594.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter italicus Ab9] gi|296842579|gb|ADH61095.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|300889431|gb|EFK84577.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X561] gi|307581329|gb|ADN54728.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X513] gi|319929256|gb|ADV79941.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|325993978|gb|EGD52407.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus JW 200] Length = 77 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +L R L+ G V +L+ L G + F ++AV FQ +GL Sbjct: 4 QQLGSRLLYEGTVGYDVLQLQMILQSLGY--DPGPIDGIFGPRTKNAVMRFQRDNGLKVD 61 Query: 155 GMVDSSTLEAMNV 167 G+V T+ +N+ Sbjct: 62 GIVGPETMRVINM 74 >gi|327198078|ref|YP_004306445.1| gp33 [Burkholderia phage KL3] gi|310657212|gb|ADP02326.1| gp33 [Burkholderia phage KL3] Length = 269 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 3/81 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G + +S +D E AVK Q G+ G+ +T Sbjct: 4 LRFNDRGAEVGLLQQRLLRAGY---ALDVSHLYDEATEQAVKALQAAAGIVVDGLAGPNT 60 Query: 162 LEAMNVPVDLRIRQLQVNLMR 182 ++ R + ++ R Sbjct: 61 YAVLSAGQRDRKHLTEADIAR 81 >gi|302548169|ref|ZP_07300511.1| putative peptidoglycan binding domain-containing protein [Streptomyces hygroscopicus ATCC 53653] gi|302465787|gb|EFL28880.1| putative peptidoglycan binding domain-containing protein [Streptomyces himastatinicus ATCC 53653] Length = 121 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL--D 152 P L G+S V L+ RL+ D+ ++ +D + AV FQ+ +G+ D Sbjct: 41 PGSQAGVLSQGDSGPQVSELQTRLLKIPDVYRDGQVNGRYDQTLTEAVARFQLWYGIRGD 100 Query: 153 PSGMVDSSTLEAM 165 G+ +T + Sbjct: 101 EDGVYGDATRRDL 113 >gi|238796357|ref|ZP_04639866.1| hypothetical protein ymoll0001_21850 [Yersinia mollaretii ATCC 43969] gi|238719802|gb|EEQ11609.1| hypothetical protein ymoll0001_21850 [Yersinia mollaretii ATCC 43969] Length = 289 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 36/208 (17%), Positives = 70/208 (33%), Gaps = 47/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L +++N+ L ++ + + +G++ R TP + + +++ + NP W Sbjct: 25 MLLPDTPREGIVINLAELRLYYYPKDQNKVIVYPIGIGQLGRNTPTMTTSVSQKIPNPTW 84 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + I+K YL E G Sbjct: 85 T-PTANIRK----------HYLA------------------------EGVTLPAVVPAGP 109 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + Y +H T F +R +SGC+R+ D+ L K P Sbjct: 110 ENPMGLFAMRLSAGRGEYLIHGTNAN--FGIGMR-VSSGCIRL-RPDDI-EALFKSVPKG 164 Query: 364 SRYHI-----EEVVKTRKTTPVKLATEV 386 +R I + V+ V++ + Sbjct: 165 TRVQIINEPVKYSVEPDGKRYVEVHQPL 192 >gi|226944399|ref|YP_002799472.1| ErfK/YbiS/YcfS/YnhG family protein [Azotobacter vinelandii DJ] gi|226719326|gb|ACO78497.1| ErfK/YbiS/YcfS/YnhG family protein [Azotobacter vinelandii DJ] Length = 317 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 59/177 (33%), Gaps = 45/177 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ + ++ V + +GR +P+ +RI + +P Sbjct: 85 RYILPPGPREG-IIINLAEYRMYYFPKDQNVVHTYPLGIGREGWGSPVAETRITGKIKDP 143 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P+SI +++ ++ + Sbjct: 144 AWYPPKSI-REE----------------------------------HAADGDPLPTVVPA 168 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 G N + K + Y +H + + F +R + GC R+ N++ L + Sbjct: 169 GPDNPLGPFKFTL--GLSGYLIHGSNKK--FGIGMR-VSHGCFRMLNHNVLQLADMV 220 >gi|82543952|ref|YP_407899.1| hypothetical protein SBO_1452 [Shigella boydii Sb227] gi|81245363|gb|ABB66071.1| conserved hypothetical protein [Shigella boydii Sb227] Length = 334 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I ++ G Sbjct: 148 TPTAGIRQRSL------------ERGIKLL----------------------PVV-PAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + F N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRFAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|220929601|ref|YP_002506510.1| peptidoglycan-binding protein [Clostridium cellulolyticum H10] gi|219999929|gb|ACL76530.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulolyticum H10] Length = 549 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 VQ+L+ERL G ++ G F + ++AVK FQ R+GL G V T E M Sbjct: 185 GTDVQQLQERLYELGYINKVTG---YFGSDTDTAVKEFQKRNGLYDDGNVGKQTREIM 239 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 LG+ + + + ++RL G L + S ++ AVK FQ +GL G + T + Sbjct: 251 LGDENGEILQYKQRLYELGYL--TAKPSGKYNNDTVLAVKRFQENNGLISDGYIGPVTKD 308 Query: 164 AM 165 + Sbjct: 309 LL 310 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G++ V +++ L+ G L KG++ F + +AV FQ R+GL G V S T Sbjct: 320 LDIGDNGEDVTKVQTYLMKLGYL---KGVTGYFGSDTHNAVLKFQSRNGLGQDGKVGSQT 376 Query: 162 LEAMNVPVDLR 172 + + + D R Sbjct: 377 IAKL-LSSDAR 386 >gi|160879581|ref|YP_001558549.1| peptidoglycan binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160428247|gb|ABX41810.1| Peptidoglycan-binding domain 1 protein [Clostridium phytofermentans ISDg] Length = 363 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 21/99 (21%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 P + ++ Q + +Y H G++ V +R L G Sbjct: 95 TPTATP-SLDQVRNGLDYY-----------------HSGDTGTPVTTIRTLLNNKGYTCA 136 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S G ++DA + + VK FQ GL G TL A+ Sbjct: 137 STG---SYDADLVNVVKSFQTAMGLSSDGSAGQGTLAAL 172 >gi|73669348|ref|YP_305363.1| hypothetical protein Mbar_A1842 [Methanosarcina barkeri str. Fusaro] gi|72396510|gb|AAZ70783.1| conserved protein [Methanosarcina barkeri str. Fusaro] Length = 306 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V+++++ LI P G + F E AV+ +Q GL G++ T Sbjct: 30 LQRGDRGSAVRKVQQALIFLDFPVPEVGANGIFGGETELAVRSYQESRGLKVDGIIGQET 89 Query: 162 LEAM 165 + ++ Sbjct: 90 IGSL 93 >gi|28210107|ref|NP_781051.1| spore-cortex-lytic enzyme precursor [Clostridium tetani E88] gi|28202543|gb|AAO34988.1| spore-cortex-lytic enzyme precursor [Clostridium tetani E88] Length = 255 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ V ++++L G D S + ++ AVK FQ ++GL+ G+ + TL Sbjct: 66 YGSKGGDVSEIQKKLKNWGYYDGSVDGIYGYKTFL--AVKKFQGKNGLNVDGVAGNKTLA 123 Query: 164 AMNVPVDL 171 A+ + V Sbjct: 124 ALGINVAQ 131 >gi|239631525|ref|ZP_04674556.1| periplasmic protease [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525990|gb|EEQ64991.1| periplasmic protease [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 480 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD +G Sbjct: 390 INATQLKPGDKGSDVKSLQQMLTALK--VGSVTVNSQYDDATQAAVKTFQQANKLDATGT 447 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL A+ + ++ + Sbjct: 448 ADQDTLAALAQKLSAQLTK 466 >gi|119504858|ref|ZP_01626936.1| general secretion pathway protein A [marine gamma proteobacterium HTCC2080] gi|119459463|gb|EAW40560.1| general secretion pathway protein A [marine gamma proteobacterium HTCC2080] Length = 555 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 16/169 (9%) Query: 32 HASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP---IISKETIAQTE------KAI 82 A V D +I + +++ + + + + + P ++S + I Sbjct: 393 TAQVWDSVIALNRPVMLDMQTPARFSAATLVVAFEGPLAWVLSNDGIKSIRLVDMATAWR 452 Query: 83 AFYQDILSRG-GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y+ GW RPL G+ +V + + L + D + F + Sbjct: 453 GRYRMFWQPPQGW----NRPLVEGDIDPAVAVVAQ-LFATLDQQVTPLTKQRFTPALAER 507 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 V+LFQ ++ L G+V TL +N + + L R + L+E Sbjct: 508 VRLFQAQNNLTADGVVGVQTLLKLNDALGKGLVS-GAALRRAQWLMEGP 555 >gi|153831250|ref|ZP_01983917.1| conserved hypothetical protein [Vibrio cholerae 623-39] gi|254224595|ref|ZP_04918211.1| conserved hypothetical protein [Vibrio cholerae V51] gi|125622658|gb|EAZ50976.1| conserved hypothetical protein [Vibrio cholerae V51] gi|148873270|gb|EDL71405.1| conserved hypothetical protein [Vibrio cholerae 623-39] Length = 306 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 66/197 (33%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L N V +GR+ R TP++ + I+ P W P SI +K+ Sbjct: 95 IVINLAELRLYYFRPNEGKVHIFPVGIGRIGRDTPVMQTSISSKRKYPTWTPPASI-RKE 153 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 K K + + V G N + + Sbjct: 154 Y---------------------KAKGIDLPPVV-------------PAGPENPLGDYAMR 179 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y +H T + F +R ++GC+R+ + D+ WL + + I Sbjct: 180 LAYGSGEYLIHGTNKD--FGVGMR-VSAGCIRM-DPKDI-EWLYQQVERGEKVRI----- 229 Query: 374 TRKTTPVKLATEVPVHF 390 + V L + V Sbjct: 230 INEPIKVALEPDRSVFI 246 >gi|320184429|gb|EFW59237.1| L,D-transpeptidase YnhG [Shigella flexneri CDC 796-83] gi|332096091|gb|EGJ01096.1| lysM domain protein [Shigella boydii 3594-74] Length = 334 Score = 59.5 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 59/172 (34%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I ++ G Sbjct: 148 TPTAGIRQRSL------------ERGIKLL----------------------PVV-PAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + F N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRFAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|262404758|ref|ZP_06081313.1| general secretion pathway protein A [Vibrio sp. RC586] gi|262349790|gb|EEY98928.1| general secretion pathway protein A [Vibrio sp. RC586] Length = 529 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 12/107 (11%) Query: 64 DSDIPIISKETIAQTEKAIA-----FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERL 118 D ++ E + + Y +L +GG+ R L G V L +L Sbjct: 415 DQAELLVGNERYRIARQWLEPLWRGQY-SLLWQGGF----SRTLKQGMRGADVALLESKL 469 Query: 119 IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L + FD + V+LFQ + G+ TL + Sbjct: 470 AQV--LGEPERPRELFDKDLARKVELFQRWQNMHVDGIAGRQTLRRL 514 >gi|154816022|emb|CAO85704.1| putative spore-cortex-lytic enzyme precursor [Clostridium sp.] Length = 198 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ V ++++L G D S + ++ AVK FQ ++GL+ G+ + TL Sbjct: 91 YGSKGGGVSEIQKKLKNWGYYDGSVDGIYGYKTFL--AVKKFQGKNGLNVDGVAGNKTLA 148 Query: 164 AMNVPVDL 171 A+ + V Sbjct: 149 ALGINVAQ 156 >gi|226939342|ref|YP_002794415.1| hypothetical protein LHK_00411 [Laribacter hongkongensis HLHK9] gi|226941506|ref|YP_002796580.1| hypothetical protein LHK_02590 [Laribacter hongkongensis HLHK9] gi|226714268|gb|ACO73406.1| Peptidoglycan-binding domain 1 protein precursor [Laribacter hongkongensis HLHK9] gi|226716433|gb|ACO75571.1| Peptidoglycan-binding domain 1 protein precursor [Laribacter hongkongensis HLHK9] Length = 267 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ +V L+++L G G F +AV+ FQ + GL G V T Sbjct: 4 LKQGSTGSAVTVLQQQLNRLGFALEPDG---WFGEATRAAVRAFQRQAGLLDDGKVGPVT 60 Query: 162 LEAMNV--PVDLRI 173 EA+ PV R+ Sbjct: 61 REALQGILPVPRRL 74 >gi|27367891|ref|NP_763418.1| hypothetical protein VV2_1544 [Vibrio vulnificus CMCP6] gi|320158161|ref|YP_004190539.1| hypothetical protein VVM_00694 [Vibrio vulnificus MO6-24/O] gi|27359464|gb|AAO08408.1| hypothetical protein VV2_1544 [Vibrio vulnificus CMCP6] gi|319933473|gb|ADV88336.1| hypothetical protein VVMO6_03314 [Vibrio vulnificus MO6-24/O] Length = 305 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 67/201 (33%), Gaps = 52/201 (25%) Query: 196 VLVNIPAASLEAVEN--GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L E GKV V +GRV R TP + + I NP W P SI +K Sbjct: 98 IVINLAELRLYYFEPELGKV-HVFPVGIGRVGRDTPEMVTSIREKRPNPTWTPPASI-RK 155 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + ++ I + G N + + Sbjct: 156 EY-----------REKGIEL-----------------------PKIVPAGPDNPLGEYAL 181 Query: 314 EFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 + Y +H T + F +R ++GC+R+ D+ WL R I Sbjct: 182 RLAYGSGDYLIHGTNKD--FGIGLR-VSAGCIRME-PKDI-EWLFSQVDKGQRVKI---- 232 Query: 373 KTRKTTPVKLATEVPVHFVYI 393 + V L P VY+ Sbjct: 233 -INQPVKVSLE---PGRIVYL 249 >gi|227487672|ref|ZP_03917988.1| hydrolase [Corynebacterium glucuronolyticum ATCC 51867] gi|227541382|ref|ZP_03971431.1| hydrolase [Corynebacterium glucuronolyticum ATCC 51866] gi|227092366|gb|EEI27678.1| hydrolase [Corynebacterium glucuronolyticum ATCC 51867] gi|227182933|gb|EEI63905.1| hydrolase [Corynebacterium glucuronolyticum ATCC 51866] Length = 392 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 11/84 (13%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V +L+ +L G + + +D AVK +Q+ GL G+ T+ A+ Sbjct: 98 MVGDDVVQLQTQLQELGFY--TDKVDGHYDDVTYEAVKTYQLNSGLTEDGICGPETVRAL 155 Query: 166 NV---------PVDLRIRQLQVNL 180 ++ P+ +R R+L N Sbjct: 156 SLLGHHITGGNPLAIRERELVRNA 179 Score = 56.4 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 8/77 (10%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISG--------DLDPSKGLSVAFDAYVESAVKLFQMR 148 + ++ L +G+ S V +R L G D + FD + + FQ Sbjct: 2 VVLKKLSVGDRSPRVAEVRATLARLGRNDAFSAPLADDFRVEETLFDEELSELLCAFQQS 61 Query: 149 HGLDPSGMVDSSTLEAM 165 G+ +GM+D TL A+ Sbjct: 62 RGILATGMIDEPTLRAL 78 >gi|37676018|ref|NP_936414.1| hypothetical protein VVA0358 [Vibrio vulnificus YJ016] gi|37200558|dbj|BAC96384.1| uncharacterized protein conserved in bacteria [Vibrio vulnificus YJ016] Length = 305 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 67/201 (33%), Gaps = 52/201 (25%) Query: 196 VLVNIPAASLEAVEN--GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L E GKV V +GRV R TP + + I NP W P SI +K Sbjct: 98 IVINLAELRLYYFEPELGKV-HVFPVGIGRVGRDTPEMVTSIREKRPNPTWTPPASI-RK 155 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + ++ I + G N + + Sbjct: 156 EY-----------REKGIEL-----------------------PKIIPAGPDNPLGEYAL 181 Query: 314 EFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 + Y +H T + F +R ++GC+R+ D+ WL R I Sbjct: 182 RLAYGSGDYLIHGTNKD--FGIGLR-VSAGCIRME-PKDI-EWLFSQVDKGQRVKI---- 232 Query: 373 KTRKTTPVKLATEVPVHFVYI 393 + V L P VY+ Sbjct: 233 -INQPVKVSLE---PGRIVYL 249 >gi|254412152|ref|ZP_05025927.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181118|gb|EDX76107.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] Length = 734 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 5/84 (5%) Query: 95 PELPIRP---LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 P + RP L G+ + V L+ L ++G + ++ + + + AV Q GL Sbjct: 154 PAVSARPNFILQRGDRNSQVTSLQRNLQVAGYFNG--PITGYYGSTTQDAVIQLQQAKGL 211 Query: 152 DPSGMVDSSTLEAMNVPVDLRIRQ 175 GM T A+ Q Sbjct: 212 TVDGMAGPKTRAALESTPVSSASQ 235 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P+ L GNS V L++ L G + ++ + E+AV FQ +GL P G+V Sbjct: 61 PVLALRKGNSGAEVTNLQKTLQAEGYFNG--PITGYYGPLTEAAVIQFQQANGLSPDGIV 118 Query: 158 DSSTLEAM 165 ++T + Sbjct: 119 GTNTTATL 126 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G+ + V L+ L G D ++ + E+AV +Q GL GMV Sbjct: 252 PGLVLKRGSRNSDVTALQRTLQAQGYYDG--PITGYYGNLTENAVIQYQKAKGLTVDGMV 309 Query: 158 DSSTLEAMNVP 168 ++T A+ +P Sbjct: 310 GANTKAALELP 320 >gi|262164646|ref|ZP_06032384.1| hypothetical protein VMA_001090 [Vibrio mimicus VM223] gi|262027026|gb|EEY45693.1| hypothetical protein VMA_001090 [Vibrio mimicus VM223] Length = 306 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L + V +GR+ R TP++ + I+ NP W P SI + + Sbjct: 95 IVINLAELRLYYFRPDEGKVHIFPVGIGRIGRDTPVMQTSISGKRKNPTWTPPASI-RSE 153 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 A + P + G N + + Sbjct: 154 YKAKGIELPAVV----------------------------------PSGPENPLGDYAMR 179 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y +H T + F +R ++GC+R+ + D+ WL + + I + Sbjct: 180 LAYGSGEYLIHGTNKD--FGIGMR-VSAGCIRM-DPKDI-EWLYQQVERGEKVRIID--- 231 Query: 374 TRKTTPVKLATEVPVHF 390 + + L + V Sbjct: 232 --EPIKIALEPDRSVFI 246 >gi|297162440|gb|ADI12152.1| hypothetical protein SBI_09034 [Streptomyces bingchenggensis BCW-1] Length = 71 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL--DPSGMVDS 159 L LG+S V L+ RL+ D+ ++ +D + SAV FQ+ +G+ D G+ Sbjct: 2 LSLGDSGPEVSELQSRLLRIPDVYTGGSVNGQYDQSLASAVARFQLWYGIRGDEDGVYGD 61 Query: 160 STLEAM 165 T + Sbjct: 62 DTRRDL 67 >gi|258622172|ref|ZP_05717198.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|262173168|ref|ZP_06040845.1| hypothetical protein VII_000255 [Vibrio mimicus MB-451] gi|258585496|gb|EEW10219.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|261890526|gb|EEY36513.1| hypothetical protein VII_000255 [Vibrio mimicus MB-451] Length = 306 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L + V +GR+ R TP++ + I+ NP W P SI + + Sbjct: 95 IVINLAELRLYYFRPDEGKVHIFPVGIGRIGRDTPVMQTSISGKRKNPTWTPPASI-RSE 153 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 A + P + G N + + Sbjct: 154 YKAKGIELPAVV----------------------------------PSGPENPLGDYAMR 179 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y +H T + F +R ++GC+R+ + D+ WL + + I + Sbjct: 180 LAYGSGEYLIHGTNKD--FGIGMR-VSAGCIRM-DPKDI-EWLYQQVERGEKVRIID--- 231 Query: 374 TRKTTPVKLATEVPVHF 390 + + L + V Sbjct: 232 --EPIKIALEPDRSVFI 246 >gi|295314770|gb|ADF97535.1| PlyM10 [uncultured phage] Length = 282 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ +V+ L+ L +G L G FD E+AVK FQ +GL G+ + + Sbjct: 220 GDTGAAVKTLQSELKQAGFLLSVDG---IFDKGTETAVKAFQRANGLAVDGVFGTGSQAK 276 Query: 165 MN 166 +N Sbjct: 277 LN 278 >gi|258624238|ref|ZP_05719187.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258583389|gb|EEW08189.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 306 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L + V +GR+ R TP++ + I+ NP W P SI + + Sbjct: 95 IVINLAELRLYYFRPDEGKVHIFPVGIGRIGRDTPVMQTSISGKRKNPTWTPPASI-RSE 153 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 A + P + G N + + Sbjct: 154 YKAKGIELPAVV----------------------------------PSGPENPLGDYAMR 179 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 + Y +H T + F +R ++GC+R+ + D+ WL + + I + Sbjct: 180 LAYGSGEYLIHGTNKD--FGIGMR-VSAGCIRM-DPKDI-EWLYQQVERGEKVRIID--- 231 Query: 374 TRKTTPVKLATEVPVHF 390 + + L + V Sbjct: 232 --EPIKIALEPDRSVFI 246 >gi|254284375|ref|ZP_04959343.1| general secretion pathway protein A [gamma proteobacterium NOR51-B] gi|219680578|gb|EED36927.1| general secretion pathway protein A [gamma proteobacterium NOR51-B] Length = 559 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 6/87 (6%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 P+ LG+ S V L R D + F+ +E+ V+LFQ GL G+V Sbjct: 470 SGPVGLGDESP-VVTLVARDFAELDDQATPLAETRFNQRLEARVRLFQRSEGLAADGVVG 528 Query: 159 SSTLEAMNVPVDLRIRQLQV-NLMRIK 184 ++T+ +N R+ ++ +L R + Sbjct: 529 AATMMRLN----QRLGRMATGDLARAR 551 >gi|297531427|ref|YP_003672702.1| NLP/P60 protein [Geobacillus sp. C56-T3] gi|297254679|gb|ADI28125.1| NLP/P60 protein [Geobacillus sp. C56-T3] Length = 450 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 2/90 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+ V++L+++L G S ++ + AV+ FQ +GL + Sbjct: 169 PATSSDALTIGSRGDDVRKLQQQLKQLGYFTYSD-ITGYYGVLTADAVRRFQRDNGLPVT 227 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 G VD+ T + V + + + R + Sbjct: 228 GAVDNQTAARLASAVKAKTTSPAL-IERER 256 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G SS + ++++RL G K F A E AVK FQ L +G+VD +T Sbjct: 29 KKGMSSPEITQIQQRLKEQGFFTYPKATG-YFGAITEEAVKAFQRAMNLPATGIVDDATY 87 Query: 163 EAMNVPVD 170 + P Sbjct: 88 AKLKKPAS 95 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ +V L+ L G ++ + A AVK FQ +GL +G D + Sbjct: 98 TLAIGSRGAAVSDLQRWLKQLGYF-RYPQITGYYGAVTADAVKQFQQANGLPATGRADRA 156 Query: 161 TLEAM 165 TLE + Sbjct: 157 TLERL 161 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 8/97 (8%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G V+R++ +L G ++ + AV+ FQ L +G+VD T Sbjct: 261 LSIGALGEDVKRIQTKLKELGYF--WTAITGYYGTATADAVRRFQQAAQLPATGVVDGET 318 Query: 162 LEAM-NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 E + ++ +++ + +G YV Sbjct: 319 YERLIGQAPAAKLDVIELVAD-----AAELLGTPYVW 350 >gi|188991092|ref|YP_001903102.1| putative carboxpeptidase [Xanthomonas campestris pv. campestris str. B100] gi|167732852|emb|CAP51046.1| putative carboxpeptidase [Xanthomonas campestris pv. campestris] Length = 431 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 43/129 (33%), Gaps = 22/129 (17%) Query: 42 ESYHSIVNDRFDNFLARVDM-GIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR 100 E Y R + + V G+D + S T Q K+ Sbjct: 169 EEYAGNWERRVPDLIESVKRDGVDLKHSVTSGSTSHQVSKS----------------TDG 212 Query: 101 PLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L G V++L+ +L G D P K F + AV+ FQ HGL G+ Sbjct: 213 KLEQGERGEQVKQLQGQLAQLGAVGRDGKPLKPDGD-FGGNTKYAVEQFQREHGLQIDGV 271 Query: 157 VDSSTLEAM 165 T A+ Sbjct: 272 AGQQTQAAL 280 >gi|305681688|ref|ZP_07404494.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium matruchotii ATCC 14266] gi|305658848|gb|EFM48349.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium matruchotii ATCC 14266] Length = 392 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 10/74 (13%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK----------GLSVAFDAYVESAVKLFQMRHGL 151 L +G++S V +R+ L G L FD +E+A++ FQ G+ Sbjct: 5 LKVGDNSPRVAEVRKSLARLGLLPNYNESGNPDHAIYNADTLFDDELEAALRGFQQARGI 64 Query: 152 DPSGMVDSSTLEAM 165 SG ++ TL + Sbjct: 65 IASGEINEMTLRVL 78 Score = 44.1 bits (103), Expect = 0.042, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 7/81 (8%) Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR----QL 176 G S + F + A+ +QM +GL+ G+ +T+ ++N + RI Q Sbjct: 113 LGFY--SDRIDGHFGEHTYRALLKYQMNYGLNMDGICGPNTIRSLNR-LGRRITGGSPQK 169 Query: 177 QVNLMRIKKLLEQKMGLRYVL 197 R++ + G R V+ Sbjct: 170 LRERERMRAAGPRLTGKRVVI 190 >gi|21243340|ref|NP_642922.1| carboxypeptidase [Xanthomonas axonopodis pv. citri str. 306] gi|21108884|gb|AAM37458.1| carboxypeptidase [Xanthomonas axonopodis pv. citri str. 306] Length = 431 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 100 RPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L G V++L+ +L G D P + F + AV+ FQ HGL G Sbjct: 212 GKLEQGERGEQVKQLQGQLAQLGAVGRDGKPLRADGD-FGGNTKYAVEQFQREHGLQIDG 270 Query: 156 MVDSSTLEAM 165 + T A+ Sbjct: 271 VAGQQTQAAL 280 >gi|325926234|ref|ZP_08187591.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas perforans 91-118] gi|325543353|gb|EGD14779.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas perforans 91-118] Length = 343 Score = 59.1 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 100 RPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L G V++L+ +L G D P + F + AV+ FQ HGL G Sbjct: 212 GKLEQGERGEQVKQLQGQLAQLGAVGRDGKPLRADGD-FGGNTKYAVEQFQREHGLQIDG 270 Query: 156 MVDSSTLEAM 165 + T A+ Sbjct: 271 VAGQQTQAAL 280 >gi|302390198|ref|YP_003826019.1| ErfK/YbiS/YcfS/YnhG family protein [Thermosediminibacter oceani DSM 16646] gi|302200826|gb|ADL08396.1| ErfK/YbiS/YcfS/YnhG family protein [Thermosediminibacter oceani DSM 16646] Length = 229 Score = 59.1 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V +++RL G + S + + AVK FQ GL +G+VD Sbjct: 160 RTLVEGSRGSDVMEVQKRLANHGFYNGS--FDGIYGSGTREAVKAFQKAKGLKATGIVDE 217 Query: 160 STLEAMNV 167 +T +A+ + Sbjct: 218 ATYKALGI 225 >gi|282896383|ref|ZP_06304404.1| Peptidoglycan-binding domain protein 1 [Raphidiopsis brookii D9] gi|281198671|gb|EFA73551.1| Peptidoglycan-binding domain protein 1 [Raphidiopsis brookii D9] Length = 252 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 7/73 (9%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 + GWP L LGN+ V +L+ L G S L F +E AVK Q+R+G Sbjct: 177 QSGWPI-----LRLGNTGAEVTKLQRLLRSLGFF--SSPLDGKFSLTLERAVKAAQLRYG 229 Query: 151 LDPSGMVDSSTLE 163 L G+ + T E Sbjct: 230 LTADGVAGAQTWE 242 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 2/79 (2%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 +I G + L +G+ SV L+ L + G + + AV F+ Sbjct: 19 EIAQVTGVGSINRPILKIGSQGESVSELQATLALLGFYSG--PVDGVYRDSTAKAVSQFK 76 Query: 147 MRHGLDPSGMVDSSTLEAM 165 GL P G+VD+ T + + Sbjct: 77 QVVGLAPDGIVDTITWQKL 95 >gi|260776994|ref|ZP_05885888.1| hypothetical protein VIC_002384 [Vibrio coralliilyticus ATCC BAA-450] gi|260606660|gb|EEX32934.1| hypothetical protein VIC_002384 [Vibrio coralliilyticus ATCC BAA-450] Length = 274 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 46/165 (27%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L + K + V +GR+ R TP + + I++ NP W P SI +K+ Sbjct: 64 IVINLAELRLYYFQPEKNLVHIFPVGIGRIGRDTPEMVTSISQKRPNPTWTPPASI-RKE 122 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + P+ + G N + + Sbjct: 123 YLEKGIELPRVV----------------------------------PAGPENPLGEYAMR 148 Query: 315 FYSRNNT--Y-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 Y +H T + F +R +SGC+R+ N D+ WL Sbjct: 149 L--AYGVGDYLIHGTNKD--FGIGLR-VSSGCIRM-NPKDI-DWL 186 >gi|258539612|ref|YP_003174111.1| carboxyl-terminal protease [Lactobacillus rhamnosus Lc 705] gi|257151288|emb|CAR90260.1| Carboxyl-terminal protease [Lactobacillus rhamnosus Lc 705] Length = 480 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD SG Sbjct: 390 INATQLKPGDKGSDVKSLQQMLKALK--IGSATVNGQYDDATQAAVKSFQEANKLDASGT 447 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL A+ + ++ + Sbjct: 448 ADQDTLAALAQKLSDQLTK 466 >gi|229552197|ref|ZP_04440922.1| S41 family carboxy-terminal processing peptidase [Lactobacillus rhamnosus LMS2-1] gi|229314499|gb|EEN80472.1| S41 family carboxy-terminal processing peptidase [Lactobacillus rhamnosus LMS2-1] Length = 485 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD SG Sbjct: 395 INATQLKPGDKGSDVKSLQQMLKALK--IGSATVNGQYDDATQAAVKSFQEANKLDASGT 452 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL A+ + ++ + Sbjct: 453 ADQDTLAALAQKLSDQLTK 471 >gi|199598686|ref|ZP_03212100.1| Periplasmic protease [Lactobacillus rhamnosus HN001] gi|199590374|gb|EDY98466.1| Periplasmic protease [Lactobacillus rhamnosus HN001] Length = 480 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD SG Sbjct: 390 INATQLKPGDKGSDVKSLQQMLKALK--IGSATVNGQYDDATQAAVKSFQEANKLDASGT 447 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL A+ + ++ + Sbjct: 448 ADQDTLAALAQKLSDQLTK 466 >gi|212712077|ref|ZP_03320205.1| hypothetical protein PROVALCAL_03156 [Providencia alcalifaciens DSM 30120] gi|212685599|gb|EEB45127.1| hypothetical protein PROVALCAL_03156 [Providencia alcalifaciens DSM 30120] Length = 359 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 64/185 (34%), Gaps = 42/185 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L +++N+ L EN + + + +G++ R TP + + I++++ +P W Sbjct: 97 MLLPSTPRTGIVINLAELRLYYYPENSRKVVVYPIGIGQLGRDTPEMVTSISQLIKDPTW 156 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + I+K + I + G Sbjct: 157 T-PTTNIRK-----------HYAQQGITL-----------------------PAVVPAGP 181 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + Y +H T F +R +SGC+R+ D+ L + P Sbjct: 182 ENPMGLYALRLSYGRGEYLIHGTNAN--FGIGMR-VSSGCIRL-RPDDI-KALFTNVPKG 236 Query: 364 SRYHI 368 +R + Sbjct: 237 TRVQV 241 >gi|307544802|ref|YP_003897281.1| ErfK/YbiS/YcfS/YnhG family protein [Halomonas elongata DSM 2581] gi|307216826|emb|CBV42096.1| ErfK/YbiS/YcfS/YnhG family protein [Halomonas elongata DSM 2581] Length = 396 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 62/188 (32%), Gaps = 52/188 (27%) Query: 189 QKMGLRYVLVNIPAASLEAV---ENGKV--GLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + + +++N+ L ++G+ + VGR D +TP+ ++ I +++ NP Sbjct: 146 PDVPRKGIVINVAEMRLYYYPPAKDGEPRTVQTYPLGVGRQDWETPLGNTTITQMVKNPA 205 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P SI Q+ ++ G Sbjct: 206 WYPPESIRQE-----------------------------------HAAAGDPLPSVVPAG 230 Query: 304 KINAMASTKIEFYSRNNT--Y-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 N + + K+ Y +H T +P +R + GCVR+ D L Sbjct: 231 PNNPLGTRKMRL----GIPGYLIHGTNKPE--GVGMR-VSHGCVRM-LPDD-AEALFDQI 281 Query: 361 PTWSRYHI 368 ++ I Sbjct: 282 SVGTQVRI 289 >gi|146329591|ref|YP_001209829.1| hypothetical protein DNO_0937 [Dichelobacter nodosus VCS1703A] gi|146233061|gb|ABQ14039.1| conserved hypothetical protein [Dichelobacter nodosus VCS1703A] Length = 296 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 53/170 (31%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L ++ +++N+P L GK + + +GR D TP+ I NP Sbjct: 75 RYILP-EVPREGIVINLPEMRLYYFPEGKSLVYVYAIGIGREDWGTPLGVHTITEKRPNP 133 Query: 243 YWVIPRSI-----IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 W P S+ + D++ + + Sbjct: 134 TWTPPASLRAEHAAKGDILPAVVE------------------------------------ 157 Query: 298 FRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 G N + + + + Y +H T +P +R + GC+R+ Sbjct: 158 ----AGPNNPLGLFAMRLSNPS--YLIHGTNKPW--GVGMR-VSHGCIRM 198 >gi|189490384|ref|YP_001956952.1| virion structural protein [Pseudomonas phage 201phi2-1] gi|164609449|gb|ABY63058.1| virion structural protein [Pseudomonas phage 201phi2-1] Length = 262 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V RL+ +LI G S F E AVK Q+R L G+V ++T Sbjct: 3 LKNGSKGDDVIRLQRKLIGLGY---SVKDDGVFGDNTEKAVKAVQLRFNLKDDGIVGNNT 59 Query: 162 LEAMNVPVDLR 172 ++ P R Sbjct: 60 WAVLDTPTTTR 70 >gi|75906281|ref|YP_320577.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75700006|gb|ABA19682.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 160 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%) Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 E I Y+ + + + L G+ V+ L++RL +G +F Sbjct: 68 EDGIVGYKTWQALYEGRAIDLPILKYGSQGELVKALQQRLQNAGYYTGLIDGDFSF--VT 125 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAM-NVP 168 E+ +K FQ+R+ L G+V T + N P Sbjct: 126 EAGIKSFQLRNNLKVDGIVGDRTWTVLSNTP 156 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G++ V+ L +RL+ + S + D+ + LFQ R + G+V Sbjct: 18 TLKQGDTGEVVKEL-QRLLRN-YYCYSGPIDGVLDSETVGGIILFQHRVFIPEDGIVGYK 75 Query: 161 TLEAM 165 T +A+ Sbjct: 76 TWQAL 80 >gi|257440593|ref|ZP_05616348.1| penicillin-resistant DD-carboxypeptidase [Faecalibacterium prausnitzii A2-165] gi|257196916|gb|EEU95200.1| penicillin-resistant DD-carboxypeptidase [Faecalibacterium prausnitzii A2-165] Length = 159 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + G S +++ ++++L G+ G F + +AV+ FQ R+GL+ G V Sbjct: 91 PGIVMRTGMSGGTIRLIQQKLNTLGE---KIGTDGKFGSRTAAAVQRFQRRNGLNADGAV 147 Query: 158 DSSTLEAM 165 +T E + Sbjct: 148 GKATWEKL 155 Score = 37.9 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 21/42 (50%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 P+ F E+AVK FQ+R+ ++ G V ++T + Sbjct: 35 YYPALTTDGRFGTKSENAVKEFQLRNNMNMDGKVGANTWNVL 76 >gi|325570956|ref|ZP_08146575.1| C-terminal processing peptidase [Enterococcus casseliflavus ATCC 12755] gi|325156282|gb|EGC68466.1| C-terminal processing peptidase [Enterococcus casseliflavus ATCC 12755] Length = 476 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%) Query: 94 WPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 +P LP L G SS +V L + L G F+ +AVK FQ H L Sbjct: 383 FPPLPRDNALKAGQSSTAVNNLNQFLKALGY----ATSGDTFNDETTAAVKTFQEAHDLK 438 Query: 153 PSGMVDSSTLEAMNVPVDLRIR 174 +G VD+ T +A+ V +++ Sbjct: 439 VTGEVDADTAQAIEKEVTEKLK 460 >gi|254424899|ref|ZP_05038617.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] gi|196192388|gb|EDX87352.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] Length = 252 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 10/108 (9%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRER 117 D D D P ++ T +Q + + I + L G+ SV RL+ Sbjct: 29 SADALEDRDTPQLTTRTYSQISQ-----RQIAQA---STVIYPTLRNGSVGESVSRLQAT 80 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L + G ++ ++ + AV FQ L G+ +T + Sbjct: 81 LKLLGFYQGE--VNGTYNELTQQAVASFQSAVNLSADGITGPATWRKL 126 Score = 56.4 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +V +L+ L G D + + + A E+AV+ FQ L +V ST Sbjct: 185 LRPSAEGPAVSQLQRELQTLGYYDGT--IDGKYGALTEAAVRAFQADQQLIVDAIVGPST 242 Query: 162 LEAM 165 A+ Sbjct: 243 WTAL 246 >gi|322833496|ref|YP_004213523.1| ErfK/YbiS/YcfS/YnhG family protein [Rahnella sp. Y9602] gi|321168697|gb|ADW74396.1| ErfK/YbiS/YcfS/YnhG family protein [Rahnella sp. Y9602] Length = 337 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 64/175 (36%), Gaps = 42/175 (24%) Query: 196 VLVNIPAASLEAVENGKV-GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++VN+ L G+ + + +G++ R TP + + +++ + NP W P + I+K Sbjct: 101 IVVNLAEMRLYYYPKGEDKVIVYPIGIGQLGRNTPEMVTSVSQKIPNPTWT-PTANIRK- 158 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 YLK+ I + V G N M + Sbjct: 159 ---------AYLKE-GITL---------PGMV--------------PAGPDNPMGLFAMR 185 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 + Y +H T F +R +SGC+R+ D+ L P +R I Sbjct: 186 LSAGTGQYLIHGTNAN--FGIGMR-VSSGCIRL-RPDDI-EALFNSVPKGTRVQI 235 >gi|313115026|ref|ZP_07800517.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622645|gb|EFQ06109.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 165 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G+S +V+ ++++L G+ + G F A +AV+ FQ R+GL G V Sbjct: 100 PGIALRSGSSGGTVRLVQQKLNSLGERLNADG---RFGAATAAAVQRFQRRNGLTADGAV 156 Query: 158 DSSTLEAM 165 T E M Sbjct: 157 GEGTWEKM 164 Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+S V ++ L D F E+AVK FQ+++ ++ G V Sbjct: 19 LQRGSSGPDVALVQTWLNGVRDACTWYSELKADGKFGISTENAVKEFQLKNKMNVDGKVG 78 Query: 159 SSTLEAM 165 ++T + Sbjct: 79 ANTWNVL 85 >gi|297545285|ref|YP_003677587.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843060|gb|ADH61576.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 333 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L +G+ S V L+ RL DP + F E AVK +Q GL + Sbjct: 173 PPIEYPTLKIGDRSPFVVSLQARLKSL-YFDPGP-IDGIFGRKTEEAVKAYQQSRGLSVT 230 Query: 155 GMVDSSTLEAM 165 G+VD+ T A+ Sbjct: 231 GIVDNVTWNAL 241 >gi|171321312|ref|ZP_02910273.1| Peptidoglycan-binding domain 1 protein [Burkholderia ambifaria MEX-5] gi|171093419|gb|EDT38603.1| Peptidoglycan-binding domain 1 protein [Burkholderia ambifaria MEX-5] Length = 266 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 3/115 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L LG+ V L+ +L+ + +AV FQ HGL G+ Sbjct: 3 KTLRLGDRGTDVGYLQRQLVA---ASARIDTDAIYGNATRTAVMAFQASHGLVADGIAGP 59 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 T + +L R L+ + + + + + +G+ Sbjct: 60 KTWSTLASGRRDPRHLTDADLQRSADRLQVDLAAVRAVNEVESHGAGFLPDGRPV 114 >gi|170720947|ref|YP_001748635.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida W619] gi|169758950|gb|ACA72266.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas putida W619] Length = 325 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 53/175 (30%), Gaps = 54/175 (30%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI---- 250 V++N+ + G+ V + +GR +PI +++I NP W P SI Sbjct: 100 VVINLAEYRMYYFPKGQSVVYTFPLGIGREGWGSPIANTKIIAKTPNPTWTPPASIRAEH 159 Query: 251 -IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 D++ + G N + Sbjct: 160 AADGDILPTVV----------------------------------------PAGPDNPLG 179 Query: 310 STKIEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 K H + + F +R + GC R+ N+++L + TP Sbjct: 180 PYKFTLGVPGYLI--HGSNKK--FGIGMRT-SHGCFRMFNNNVLELSKMVPVGTP 229 >gi|297192181|ref|ZP_06909579.1| muramoyl-pentapeptide carboxypeptidase [Streptomyces pristinaespiralis ATCC 25486] gi|197720174|gb|EDY64082.1| muramoyl-pentapeptide carboxypeptidase [Streptomyces pristinaespiralis ATCC 25486] Length = 245 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G S V +L+ R+ + ++ +AVK FQ +GL G+ Sbjct: 39 SRTLSQGASGSDVTQLQIRMSGYPGYGAVLAVDGSYGPATTAAVKRFQSAYGLAADGVAG 98 Query: 159 SST---LEAM 165 +T + A+ Sbjct: 99 PATFSKIYAL 108 >gi|149183036|ref|ZP_01861490.1| putative muramoyl-pentapeptide carboxypeptidase [Bacillus sp. SG-1] gi|148849266|gb|EDL63462.1| putative muramoyl-pentapeptide carboxypeptidase [Bacillus sp. SG-1] Length = 210 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPSG 155 R + G+S V+ L+ R+ S+ + F + E+AVK FQ +GL G Sbjct: 4 TRTMRNGDSGSDVKELQIRVAGWASDTASQTYVLVDGVFGSGTEAAVKRFQKAYGLTVDG 63 Query: 156 MVDSSTLEAMN 166 + T +N Sbjct: 64 IAGPQTHSQLN 74 >gi|90020795|ref|YP_526622.1| general secretion pathway protein A [Saccharophagus degradans 2-40] gi|89950395|gb|ABD80410.1| Peptidoglycan-binding domain 1 [Saccharophagus degradans 2-40] Length = 563 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+ L G S ++ L ++ D + F A + VK+FQ +GL P Sbjct: 478 PKGFTEALIQGQRSPAITWLAQKFAEL-DGREKPLTNDHFSAALAKRVKIFQRNNGLTPD 536 Query: 155 GMVDSSTLEAMN 166 G+V TL +N Sbjct: 537 GIVGEQTLLKLN 548 >gi|291532676|emb|CBL05789.1| Uncharacterized protein conserved in bacteria [Megamonas hypermegale ART12/1] Length = 395 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 9/87 (10%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQ 252 R++L+NIPA SL +N K V VG+++ +TP+ + + +I+ NP W P + Sbjct: 52 RWILINIPARSLRLYDNDKCIEMYPVGVGKIETKTPVGFYKVVEKIV-NPTWTDPADVSV 110 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGK 279 ++ +P I G Sbjct: 111 --VIPSGEDNP-----LGYRWIGIGGN 130 >gi|289665442|ref|ZP_06487023.1| hypothetical protein XcampvN_20822 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 625 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 3/70 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + V+ L++ L G D + VK FQ HGL G Sbjct: 425 SGVLRENVRAADVRTLQQTLQQLGYKDAHGHELKPDGVYGQRTSETVKAFQRAHGLQDDG 484 Query: 156 MVDSSTLEAM 165 +V T A+ Sbjct: 485 VVGRDTQAAL 494 >gi|257438481|ref|ZP_05614236.1| spore cortex-lytic enzyme, pre-pro-form [Faecalibacterium prausnitzii A2-165] gi|257199060|gb|EEU97344.1| spore cortex-lytic enzyme, pre-pro-form [Faecalibacterium prausnitzii A2-165] Length = 866 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L +G+S +V++L+ L + PS + + + AV+ FQ R+GL G+V Sbjct: 424 LRVGSSGSAVEQLQFWLNTLAQYESSIPSVAVDGVYGSGTAGAVRAFQRRYGLSVDGVVG 483 Query: 159 SSTLEAM 165 +T + Sbjct: 484 RATWTEL 490 Score = 54.5 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P PL G+ +V L+ +L I+ D + F + + VK FQ + L Sbjct: 320 PGSPLRRGDRGTAVFTLQRQLNRITKDYPFLGLLTVDGVFGSRMTETVKRFQKQFNLTAD 379 Query: 155 GMVDSSTLE 163 G+V T Sbjct: 380 GVVGRQTWY 388 Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 17/131 (12%) Query: 48 VNDRFDNFLARVDMGIDSDIPIISKETIAQT--EKAIAFYQDILSR--------GGWPEL 97 V+ +F A S + S + +T K Y DI +R G +P + Sbjct: 543 VDGKFGAGTAAAVRRFQSYFGLTSDGVVGRTTWNKLYEVYNDIANRLLTASLRPGEYPGV 602 Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 L G++ +V+ L+ L + + P+ + +F A E+AV+ +Q L Sbjct: 603 ----LRRGSTGTAVRELQFYLYLMSAYESSIPAVSIDGSFGAATENAVRAYQRFAKLTVD 658 Query: 155 GMVDSSTLEAM 165 G+V +T ++ Sbjct: 659 GVVGRTTWNSL 669 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 4/103 (3%) Query: 84 FYQDILSRGGWP-ELPIRPLHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVE 139 ++ I S G P P L G+S +V+ ++ L I+ + P + + F A Sbjct: 493 QFRSIQSDNGRPNAYPGTALRQGSSGQNVRLVQFWLKIARTVYPNLNTLTVDGKFGAGTA 552 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 +AV+ FQ GL G+V +T + + +L +R Sbjct: 553 AAVRRFQSYFGLTSDGVVGRTTWNKLYEVYNDIANRLLTASLR 595 >gi|269103521|ref|ZP_06156218.1| general secretion pathway protein A [Photobacterium damselae subsp. damselae CIP 102761] gi|268163419|gb|EEZ41915.1| general secretion pathway protein A [Photobacterium damselae subsp. damselae CIP 102761] Length = 547 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + G V L ++L L + FD + ++ FQ L+ G+ Sbjct: 469 SIRYGQQGPRVAWLNQQLNT--FLGEPQTNQNYFDQGLVDKLRRFQRSQSLNADGIAGKQ 526 Query: 161 TLEAM 165 TL + Sbjct: 527 TLMVL 531 >gi|197334919|ref|YP_002157038.1| general secretion pathway protein A [Vibrio fischeri MJ11] gi|197316409|gb|ACH65856.1| general secretion pathway protein A [Vibrio fischeri MJ11] Length = 518 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + R + G+ ++ L L+ + L+ S FD E VK FQ GL Sbjct: 435 PIITERAMRKGDEGAAIFAL-NHLLST-ALEQPMVESDRFDEKTEQQVKQFQEIFGLKED 492 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQ 177 G+ SSTL ++ + LQ Sbjct: 493 GIAGSSTLMWLDSVTNANAPLLQ 515 >gi|329667436|gb|AEB93384.1| DNA protecting protein [Lactobacillus johnsonii DPC 6026] Length = 483 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V V L++ L G + K ++ FD ++AV FQ HGL G+V+ Sbjct: 394 LKKSMTGVDVATLQQYLTALGYMP--KHVTGVFDDETKNAVIEFQKAHGLTADGIVNGQV 451 Query: 162 LEAMNVPVDLRIR 174 + + V +++ Sbjct: 452 QAQLYLAVAQKLQ 464 >gi|298113087|gb|ADI58676.1| hypothetical protein [Streptomyces nodosus subsp. asukaensis] Length = 555 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 15/125 (12%) Query: 50 DRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG-----GWPEL----PIR 100 + N +D +K +A + A + + + G W L Sbjct: 433 QQLLNDQGYPAGAVDGSFGPATKTAVAAFQAA----RGLSADGVVGPRTWTALLSAGTTP 488 Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G S V+RL+ L + L + G+ F +AV+ +Q GL G+V Sbjct: 489 SLQQGASGDGVKRLQRSLTAA--LGTTVGIDGGFGPATVTAVRNYQTSRGLTADGIVGPD 546 Query: 161 TLEAM 165 T A+ Sbjct: 547 TWAAL 551 Score = 57.2 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V+ +++ L G P+ + +F ++AV FQ GL G+V T A Sbjct: 423 GSTGAQVKAVQQLLNDQGY--PAGAVDGSFGPATKTAVAAFQAARGLSADGVVGPRTWTA 480 Query: 165 M 165 + Sbjct: 481 L 481 >gi|170754496|ref|YP_001781027.1| zinc carboxypeptidase family protein [Clostridium botulinum B1 str. Okra] gi|169119708|gb|ACA43544.1| zinc carboxypeptidase family protein [Clostridium botulinum B1 str. Okra] Length = 423 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V++++ L G + F + E VK FQ+ +GL G++ T Sbjct: 4 LKKGDRGSDVRKIQAVLQKIGY--NVGPIDGIFGSNTEETVKRFQLNNGLVVDGIIGPKT 61 Query: 162 LEAMN 166 E +N Sbjct: 62 YEVLN 66 >gi|323702591|ref|ZP_08114253.1| spore cortex-lytic enzyme [Desulfotomaculum nigrificans DSM 574] gi|323532410|gb|EGB22287.1| spore cortex-lytic enzyme [Desulfotomaculum nigrificans DSM 574] Length = 239 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S V ++++RL G L F + + +AV+ FQ +GL G+V T +A Sbjct: 44 GTSGDKVYQVQKRLKDWGYYTG--PLDGYFGSQMSAAVQKFQRYNGLTADGVVGEQTWQA 101 Query: 165 M 165 + Sbjct: 102 L 102 >gi|169631880|ref|YP_001705529.1| bacteriophage protein [Mycobacterium abscessus ATCC 19977] gi|169243847|emb|CAM64875.1| Bacteriophage protein [Mycobacterium abscessus] Length = 282 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 9/77 (11%) Query: 95 PELPIRP-----LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR- 148 P +P+ L G+ V +L+ RL G + F E++V+ FQ R Sbjct: 200 PSVPVGEYADVLLFRGSKGPQVSQLQRRLNEHG---ADLVVDGIFGPNTEASVREFQRRA 256 Query: 149 HGLDPSGMVDSSTLEAM 165 GL G+V +T A+ Sbjct: 257 RGLKVDGIVGPATAAAL 273 >gi|260174282|ref|ZP_05760694.1| SpoIID/LytB domain-containing protein [Bacteroides sp. D2] gi|315922552|ref|ZP_07918792.1| predicted protein [Bacteroides sp. D2] gi|313696427|gb|EFS33262.1| predicted protein [Bacteroides sp. D2] Length = 285 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 9/77 (11%) Query: 105 GNSSVSVQRLRERL-----IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G S V L +L II D++ + V + +E+A+K FQ H G+V Sbjct: 128 GVSGKDVAELANKLVKIRYIIKSDIEKNYSGDVKYSIRLENAIKKFQKDHNQVVDGIVGK 187 Query: 160 STLEAMNVPVDLRIRQL 176 T+EA+N +I Q+ Sbjct: 188 KTIEAIN----KQIEQI 200 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L V +L+ LI G L + FD E AV FQ G+D G+V++ Sbjct: 219 LKKQMQGYDVTQLKNILIDKGYLSGKLLKGTSLFDEETEKAVIKFQKSIGIDADGIVETQ 278 Query: 161 TLEAM 165 T+ + Sbjct: 279 TVYFL 283 >gi|301058095|ref|ZP_07199147.1| peptidoglycan binding domain protein [delta proteobacterium NaphS2] gi|300447727|gb|EFK11440.1| peptidoglycan binding domain protein [delta proteobacterium NaphS2] Length = 544 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%) Query: 94 WPELPIRP--LHLGNSSVSVQRLRERL-IISGDLDPS---KGLSVAFDAYVESAVKLFQM 147 W PI+ L G+S V+ L+ +L + G DPS S FD +ES V FQ Sbjct: 453 WKPPPIKSAILKKGDSGPDVRWLKAQLNRVEGGNDPSVSDTAESNVFDDILESRVMNFQR 512 Query: 148 RHGLDPSGMVDSSTLEAMNVP 168 + P G+V TL + P Sbjct: 513 SCAVLPDGIVGEQTLIQLTKP 533 >gi|167900261|ref|ZP_02487662.1| bacteriophage-acquired protein [Burkholderia pseudomallei 7894] Length = 270 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AVK Q GL G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDETTERAVKALQAAAGLVDDGIAGPKT 60 Query: 162 LEAM 165 + Sbjct: 61 YAVL 64 >gi|121535627|ref|ZP_01667433.1| 3D domain protein [Thermosinus carboxydivorans Nor1] gi|121305797|gb|EAX46733.1| 3D domain protein [Thermosinus carboxydivorans Nor1] Length = 193 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V+ L++ L G + + F AV FQ +GL G+V T Sbjct: 30 LRQGDRGEDVRYLQKMLADKGYY--AGAIDGIFGGATMRAVLEFQRDNGLVADGIVGKDT 87 Query: 162 LEAM 165 L + Sbjct: 88 LRYL 91 >gi|117619077|ref|YP_855859.1| LysM domain-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560484|gb|ABK37432.1| LysM domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 305 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 74/210 (35%), Gaps = 50/210 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + +++N+P L GK + + +G + R+TP + + + NP W Sbjct: 88 MLLPNVPREGIVINLPELRLYYFPKGKNEVMVLPIGIGDIGRETPEMTTTVIAKNPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +P ++R+ +L+ I + PG Sbjct: 148 -VP--------GPMVRK--SWLEQKGITL-----------------------PAVVPPGP 173 Query: 305 INAMASTKIEFYSRNNT--Y-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 N + K Y +H T + F +R ++GC+R+ D+ L K P Sbjct: 174 DNPLG--KFAMRLGYGKQDYLIHGTNKD--FGVGLR-VSAGCIRL-RPDDI-EALFKIVP 226 Query: 362 TWSRYH-----IEEVVKTRKTTPVKLATEV 386 ++ ++ ++ +++ + + Sbjct: 227 IGTQVRVINQPVKTAIEPDGRHWLEVHSPL 256 >gi|320175139|gb|EFW50250.1| L,D-transpeptidase YnhG [Shigella dysenteriae CDC 74-1112] Length = 334 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I ++ G Sbjct: 148 TPTAGIRQRSL------------ERGIKLL----------------------PVV-PAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + F N Y +H T P V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRFAHGNGEYLIHGTSAPDCVGLRV---SSGCIRMNAPDIKALF 221 >gi|298244218|ref|ZP_06968024.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] gi|297551699|gb|EFH85564.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] Length = 372 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 I+++ W L I + G+SS +V ++ L G S ++ + + SAVK +Q Sbjct: 293 IVAQQTWEAL-ITTVTPGSSSAAVSAVQNLLSARGY---SVSVTGYYGSATASAVKSYQS 348 Query: 148 RHGLDPSGMVDSSTLEAM 165 GL G V+ T A+ Sbjct: 349 SRGLTADGTVEKGTWCAL 366 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 15/99 (15%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 +P + ++ K + Y WP L R S +V+ ++ L + G Sbjct: 219 LPALRHAVASRLNKPLPAY-------TWPTLKSRT-----SGNNVRTIQRLLQVRGY--- 263 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S + F S+++ FQ GL +G+V T EA+ Sbjct: 264 SVAVDGTFGPSTVSSIQSFQSTKGLSVNGIVAQQTWEAL 302 >gi|295706084|ref|YP_003599159.1| endopeptidase [Bacillus megaterium DSM 319] gi|294803743|gb|ADF40809.1| Endopeptidase [Bacillus megaterium DSM 319] Length = 225 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 2/77 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + L G + V++L++ L G + SAVK FQ ++G+ G Sbjct: 25 ALGDQTLRQGMNHQDVKQLQQTLKNKGYFKGNTTTYFG--TVTTSAVKSFQRKNGIAADG 82 Query: 156 MVDSSTLEAMNVPVDLR 172 +V T + V + Sbjct: 83 IVGKGTYAKLGVSAKGK 99 >gi|291541685|emb|CBL14795.1| Putative peptidoglycan-binding domain-containing protein [Ruminococcus bromii L2-63] Length = 530 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD--S 159 G+S V+++++RL G D + + F E A K FQ GL G+ Sbjct: 231 YKNGSSGAEVKKIQQRLADLGYYDGA--VDGYFGDATEEAYKAFQKAAGLTVDGIAGDSR 288 Query: 160 STLEAMNVPVDLRIR 174 +TL + N P + Sbjct: 289 NTLYSENAPEAPKAD 303 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + V ++++LI G + + + Y AV FQ ++ LD +G+VD T A Sbjct: 336 GDENDEVTAIQQQLIKLGYF--AMDATGYYGEYTAQAVANFQNQNSLDSTGIVDEKTYNA 393 Query: 165 M 165 + Sbjct: 394 L 394 >gi|323527783|ref|YP_004229936.1| peptidoglycan-binding domain 1 protein [Burkholderia sp. CCGE1001] gi|323384785|gb|ADX56876.1| Peptidoglycan-binding domain 1 protein [Burkholderia sp. CCGE1001] Length = 268 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ LG+ V L+ RL +G ++ +D E+AV+ Q + GL G+ Sbjct: 1 MKTHRLGDYGDDVGLLQRRLARAGF---QLDVTHVYDDATEAAVEEIQTKVGLVVDGIAG 57 Query: 159 SSTLEAM 165 TL A+ Sbjct: 58 PKTLAAI 64 >gi|258620833|ref|ZP_05715867.1| General secretion pathway protein A [Vibrio mimicus VM573] gi|258586221|gb|EEW10936.1| General secretion pathway protein A [Vibrio mimicus VM573] Length = 455 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 12/111 (10%) Query: 60 DMGIDSDIPIISKETIAQTEKAIA-----FYQDILSRGGWPELPIRPLHLGNSSVSVQRL 114 + D ++ + + + Y +L +GG+ R L G V L Sbjct: 337 RLNADEAELLVGDQRYRIARQWLEPLWRGQY-SLLWQGGF----SRTLKQGMQGDDVALL 391 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +L L + FD + V+LFQ + G+V TL + Sbjct: 392 ESKLSQV--LGEPERPRDQFDKDLSRKVELFQRWQNMQVDGIVGRQTLRRL 440 >gi|255637048|gb|ACU18856.1| unknown [Glycine max] Length = 232 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +R +H G ++ V LR L G L + FD VESA+K +Q H L +G+VD Sbjct: 43 LRGVHRGQNAKGVGELRGYLQKYGYLTKGSSSNDNFDENVESALKHYQAFHHLRDTGVVD 102 Query: 159 SSTLEAMNVP 168 T++ M++P Sbjct: 103 DDTIKKMSLP 112 >gi|167465177|ref|ZP_02330266.1| cell wall hydrolase, SleB [Paenibacillus larvae subsp. larvae BRL-230010] Length = 216 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 34/148 (22%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L++G S V L+ERL G KG++ + + AV+ FQ +GL +G DS+ Sbjct: 31 TLNIGTQSEHVLNLQERLSSLGYFK--KGITGYYGKITKEAVRDFQKAYGLSVTGSADSA 88 Query: 161 TLEAMN---VPVDLRIRQLQVNLMRIKKLLEQKMGLRY---VLVNIPAASLEAVENGKVG 214 TL +N + + +L + + + G + V V G V Sbjct: 89 TLAKLNQMAGSKQITLDKLA------RIIYAEARGESFKGQVAV------------GAVV 130 Query: 215 LRSTVIVGRVDRQTPILHSRINRIMFNP 242 L V Q+ I ++F P Sbjct: 131 LN-RV-------QSNAFPDSITEVIFQP 150 >gi|268319577|ref|YP_003293233.1| carboxy-terminal processing protease [Lactobacillus johnsonii FI9785] gi|262397952|emb|CAX66966.1| carboxy-terminal processing protease [Lactobacillus johnsonii FI9785] Length = 483 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V V L++ L G + K ++ FD ++AV FQ HGL G+V+ Sbjct: 394 LKKSMTGVDVATLQQYLTALGYMP--KYVTGVFDDETKNAVIEFQKAHGLTADGIVNGQV 451 Query: 162 LEAMNVPVDLRIR 174 + + V +++ Sbjct: 452 QAQLYLAVAQKLQ 464 >gi|258508400|ref|YP_003171151.1| carboxyl-terminal protease [Lactobacillus rhamnosus GG] gi|257148327|emb|CAR87300.1| Carboxyl-terminal protease [Lactobacillus rhamnosus GG] gi|259649714|dbj|BAI41876.1| protease [Lactobacillus rhamnosus GG] Length = 480 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD SG Sbjct: 390 INATQLKPGDKGSDVKSLQQMLKALK--IGSATVNGQYDDATQAAVKSFQEANELDASGT 447 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL A+ + ++ + Sbjct: 448 ADQDTLAALAQKLSAQLTK 466 >gi|307267035|ref|ZP_07548550.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306917960|gb|EFN48219.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 77 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +L R L+ G V +L+ L G + F ++AV FQ +GL Sbjct: 4 QQLGSRLLYEGTVGYDVLQLQMILQSLGY--DPGPIDGIFGPRTKNAVMKFQRDNGLKVD 61 Query: 155 GMVDSSTLEAMNV 167 G+V T+ +N+ Sbjct: 62 GIVGPETMRVINM 74 >gi|238025815|ref|YP_002910046.1| Gp43, bacteriophage-acquired protein [Burkholderia glumae BGR1] gi|237875009|gb|ACR27342.1| Gp43, bacteriophage-acquired protein [Burkholderia glumae BGR1] Length = 270 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LH + V L+ RL +G P+ +D E AVK Q GL G+ T Sbjct: 4 LHFNDRGAEVGLLQSRLARAGYTVPTTH---IYDEATERAVKAVQAAAGLVVDGIAGPKT 60 Query: 162 LEAM 165 + Sbjct: 61 YATL 64 >gi|218288979|ref|ZP_03493216.1| Peptidoglycan-binding domain 1 protein [Alicyclobacillus acidocaldarius LAA1] gi|218240804|gb|EED07982.1| Peptidoglycan-binding domain 1 protein [Alicyclobacillus acidocaldarius LAA1] Length = 719 Score = 58.3 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG++ +V++L+E L L + F ++AVK FQ++HG+ G+ T Sbjct: 619 LQLGSTGPAVKQLQEDLNKV--LGLHLAVDGVFGPATQAAVKSFQLQHGITVDGIYGPQT 676 Query: 162 LEAM 165 +AM Sbjct: 677 AQAM 680 >gi|289579097|ref|YP_003477724.1| peptidoglycan-binding protein [Thermoanaerobacter italicus Ab9] gi|289528810|gb|ADD03162.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter italicus Ab9] Length = 336 Score = 58.3 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L +G+ S V L+ RL DP + F E AVK +Q GL + Sbjct: 173 PPIEYPTLKIGDRSPFVVNLQARLKSL-YFDPGP-IDGIFGRKTEEAVKAYQQSRGLSVT 230 Query: 155 GMVDSSTLEAM 165 G+VD+ T A+ Sbjct: 231 GIVDNVTWNAL 241 >gi|269139201|ref|YP_003295902.1| hypothetical protein ETAE_1854 [Edwardsiella tarda EIB202] gi|267984862|gb|ACY84691.1| hypothetical protein ETAE_1854 [Edwardsiella tarda EIB202] Length = 374 Score = 58.3 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 69/208 (33%), Gaps = 47/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYW 244 +L +++N+ L G+ + + +G++ R TP + +R+++ + +P W Sbjct: 90 MLLPDTPREGIVINLAELRLFYYPPGENRVEVYPIGIGQLGRNTPEMVTRVSQHIKDPTW 149 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +I + + + G Sbjct: 150 TPTANI-----------------RRHYQ------------------AQGISLPAVMPAGP 174 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + ++ Y +H T F +R +SGC+R+ D+ L + P Sbjct: 175 DNPMGRFALRLAAQGGVYLIHGTNAD--FGIGMR-VSSGCIRL-RPGDI-EALFRSVPGG 229 Query: 364 SRYHI-----EEVVKTRKTTPVKLATEV 386 +R I + V+ V++ + Sbjct: 230 TRVQIVNQPVKTSVEPDGKRYVEVHQPL 257 >gi|282900449|ref|ZP_06308398.1| Peptidoglycan-binding domain protein 1 [Cylindrospermopsis raciborskii CS-505] gi|281194642|gb|EFA69590.1| Peptidoglycan-binding domain protein 1 [Cylindrospermopsis raciborskii CS-505] Length = 232 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LGN+ V +L+ L G + F +E AVK Q+R+GL G+V T Sbjct: 163 LRLGNTGAEVTKLQRLLRALGFFPS--PIDGKFSVTLERAVKAAQLRYGLTADGVVGGQT 220 Query: 162 L 162 Sbjct: 221 W 221 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 2/81 (2%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 Y I G + L +G+ SV L+ L + G + + AV Sbjct: 6 YTPIAQVTGVGSINRPMLKIGSQGESVSELQATLALLGFYSG--PVDGVYRDSTAKAVSQ 63 Query: 145 FQMRHGLDPSGMVDSSTLEAM 165 F+ GL P G+VD+ T + + Sbjct: 64 FKQVVGLAPDGIVDTITWQKL 84 >gi|226945800|ref|YP_002800873.1| PG-binding-1 domain-containing protein [Azotobacter vinelandii DJ] gi|226720727|gb|ACO79898.1| PG-binding-1 domain-containing protein [Azotobacter vinelandii DJ] Length = 276 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 6/86 (6%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L L + +++V L+++L G + E AV+ +Q R GL G+ Sbjct: 3 TLRLDDRNLAVLTLQKQLNALG---AGLYPDGHYGEQTEQAVRDYQRRTGLVVDGIAGPK 59 Query: 161 TLEAM---NVPVDLRIRQLQVNLMRI 183 T+ A+ ++ L+ R L+ R+ Sbjct: 60 TMAALAGQDIGHLLKQRDLERAAERL 85 >gi|237786645|ref|YP_002907350.1| cell wall hydrolase [Corynebacterium kroppenstedtii DSM 44385] gi|237759557|gb|ACR18807.1| cell wall hydrolase [Corynebacterium kroppenstedtii DSM 44385] Length = 392 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 10/74 (13%) Query: 102 LHLGNSSVSVQRLRERLIISGDL----------DPSKGLSVAFDAYVESAVKLFQMRHGL 151 L +G+ S V +R L G L D FD ++SA++ FQ + G+ Sbjct: 5 LQVGDKSPRVAEVRTILTKVGLLKHPVSEHTSTDQWADGDDDFDYELQSALRAFQQQRGV 64 Query: 152 DPSGMVDSSTLEAM 165 G+++ TL + Sbjct: 65 LADGVINDHTLRLL 78 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V +L+ L G + F SA+K +Q +GL G+ T++A+ Sbjct: 98 MQGDDVAQLQSHLQELGFYSSQ--IDGQFSRDTYSALKNYQRDYGLTVDGVCGPDTMKAL 155 >gi|254414875|ref|ZP_05028639.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178364|gb|EDX73364.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] Length = 406 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P P PL G+ V++++E L G DP + A ++AV FQ G+ Sbjct: 335 PLEPFLPLQEGSVGSQVKQVQEVLQQEGF-DPGPADG-IYGAKTKAAVIAFQRSKGMTAD 392 Query: 155 GMVDSSTLEAMN 166 G+V + T +N Sbjct: 393 GIVGAVTWSVLN 404 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 7/74 (9%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ + V+ L++ L G + F A E AV LFQ +GL+P G+V +T Sbjct: 193 LREGDTGLRVKELQQILSAQGF--NPGPIDGIFGAGTEDAVVLFQKFYGLEPDGLVGPNT 250 Query: 162 LEAMNVPVDLRIRQ 175 + + R+ Q Sbjct: 251 WKVL-----ERVSQ 259 >gi|332709903|ref|ZP_08429859.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332351274|gb|EGJ30858.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 140 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 101 PLHLGNSSVSVQRLRERLIIS-GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L G V+ L++ L+ G L ++ +A+K FQ+++ L G+V Sbjct: 68 TLRPGQQGDKVRILQKLLLKKYGYRQKQVPLDGTYNDGTVAAIKKFQLKNSLSADGIVGP 127 Query: 160 STLEAM 165 T + + Sbjct: 128 QTWKLL 133 >gi|262166485|ref|ZP_06034222.1| general secretion pathway protein A [Vibrio mimicus VM223] gi|262026201|gb|EEY44869.1| general secretion pathway protein A [Vibrio mimicus VM223] Length = 529 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 60 DMGIDSDIPIISKETIAQTEKAIA-----FYQDILSRGGWPELPIRPLHLGNSSVSVQRL 114 + D ++ + + + Y +L +GG+ R L G V L Sbjct: 411 RLNADEAELLVGDQRYRIARQWLEPLWHGQY-SLLWQGGF----SRTLKQGMQGADVALL 465 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +L L + FD + V+LFQ + G+ TL + Sbjct: 466 ESKLSQV--LGEPERPRDQFDKDLSRKVELFQRWQNMQVDGIAGRQTLRRL 514 >gi|258645663|ref|ZP_05733132.1| putative cell wall lytic activity [Dialister invisus DSM 15470] gi|260403030|gb|EEW96577.1| putative cell wall lytic activity [Dialister invisus DSM 15470] Length = 429 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GN + L++RL +G L + + +AVK FQ H L SG VD TL Sbjct: 106 GNRGDMIAELQDRLAAAGYLTGASDG--IYGGDTAAAVKQFQKDHRLPVSGAVDEQTLSL 163 Query: 165 M 165 + Sbjct: 164 L 164 Score = 54.5 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + LH+G +V+ L+ L+ +G L ++ + + + AV FQ HGL +G Sbjct: 20 SVSAEILHMGMRGAAVESLQNDLVEAGYL--ARTVDGDYGSTTVKAVSEFQKDHGLPVTG 77 Query: 156 MVDSSTLEAM 165 D ST + Sbjct: 78 KADDSTQAKL 87 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ ++ L+ +L +G LD + ESAV+ Q HGL +G VD +T + Sbjct: 195 GDRGSEIKTLQNKLRRAGYLDGEADG--IYGNDTESAVRALQEEHGLSVTGNVDDATWKL 252 Query: 165 M 165 + Sbjct: 253 L 253 Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L G+ V +L+ RL++ G G + A AV+ Q L+ +GM D+ Sbjct: 263 GTLKAGDRGKRVVKLQNRLLLHGY--NPGGSDGIYGAATAEAVRKLQAEEKLERTGMADT 320 Query: 160 STLEAM-NVP 168 + E + N P Sbjct: 321 NVWERLENAP 330 >gi|115379890|ref|ZP_01466951.1| hypothetical protein STIAU_1822 [Stigmatella aurantiaca DW4/3-1] gi|310817668|ref|YP_003950026.1| hypothetical protein STAUR_0390 [Stigmatella aurantiaca DW4/3-1] gi|115363106|gb|EAU62280.1| hypothetical protein STIAU_1822 [Stigmatella aurantiaca DW4/3-1] gi|309390740|gb|ADO68199.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 586 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPS--KGLSVAFDAYVESAVKLFQMRHGLDP 153 LP + L G+ V++L++ L+ G + + F E+A+K FQ HG+D Sbjct: 326 TLPNQQLKRGSKGEGVEKLQDALVKLGYMTKAQVATGPGTFGPKTEAALKKFQKDHGVDA 385 Query: 154 SGMVDSSTLEA 164 G T A Sbjct: 386 IGEYGPKTRAA 396 >gi|304316200|ref|YP_003851345.1| NLP/P60 protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777702|gb|ADL68261.1| NLP/P60 protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 226 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V L++ L G + G+ F + +AV Q + GL P G+V +T Sbjct: 28 LKYGSRGQAVVSLQQTLNRLGY--NTGGIDGIFGSATRNAVIALQKKFGLSPDGIVGPAT 85 Query: 162 LEAMNVPV 169 +N V Sbjct: 86 EAVLNRTV 93 >gi|90411905|ref|ZP_01219913.1| putative general secretion pathway protein A [Photobacterium profundum 3TCK] gi|90327163|gb|EAS43535.1| putative general secretion pathway protein A [Photobacterium profundum 3TCK] Length = 521 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 6/78 (7%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + G V L ++L L ++ S F V ++ FQ L Sbjct: 437 PHGSKTTIRYGQQGPRVAWLSQQLNS--FLGETQTHSDYFGQSVLDKLRRFQRSQDLAAD 494 Query: 155 GMVDSSTL----EAMNVP 168 G+ TL A+N+P Sbjct: 495 GIAGPLTLMVLDSALNLP 512 >gi|197285269|ref|YP_002151141.1| peptidoglycan-binding protein [Proteus mirabilis HI4320] gi|194682756|emb|CAR42976.1| putative peptidoglycan-binding protein [Proteus mirabilis HI4320] Length = 305 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 42/175 (24%) Query: 196 VLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L + G + +G++ R+TP + + +++++ +P W P + I+K+ Sbjct: 98 IVINLAELRLYYYPKEGGTVDVYPIGIGQLGRETPEMVTSVSQLIKDPTWT-PTANIRKN 156 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 A P + G N M + + Sbjct: 157 YAAKGITLPAVV----------------------------------PAGPDNPMGAYALR 182 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 Y +H T F +R +SGC+R+ D+ L P SR + Sbjct: 183 LAHSRGEYLIHGTNAD--FGIGLR-VSSGCIRL-RPDDI-ETLFNVVPKGSRVQV 232 >gi|197117361|ref|YP_002137788.1| peptidoglycan L,D-transpeptidase [Geobacter bemidjiensis Bem] gi|197086721|gb|ACH37992.1| peptidoglycan L,D-transpeptidase, YkuD family, LysM domain-containing protein [Geobacter bemidjiensis Bem] Length = 307 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 52/173 (30%), Gaps = 46/173 (26%) Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKV--GLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ + ++VN+ L GK + +G +TP+ + + + +P Sbjct: 100 WIVPRVQSDPDIVVNLAEYRLYLFPQGKFGAVFTFPLGIGDEGAETPLGTYTVIQKITSP 159 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P SI + E P P Sbjct: 160 SWHVPDSI-----------------RH----------------------EVPGLPSIVPP 180 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 G N + + + SR N +H T P + GC+R+ D+ Sbjct: 181 GPSNPLGTHALRL-SRANILIHGTNRPWGIGRRS---SHGCLRL-YPEDIATL 228 >gi|303238375|ref|ZP_07324910.1| spore cortex-lytic enzyme [Acetivibrio cellulolyticus CD2] gi|302594079|gb|EFL63792.1| spore cortex-lytic enzyme [Acetivibrio cellulolyticus CD2] Length = 234 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 16/117 (13%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRL 114 LA + + I S I + KA+ Y+ LS G++ V+ + Sbjct: 7 LLAAISLAIVSL--ITTTYIYRSDIKALFQYKAALSY------------YGSTGQEVKNI 52 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + +L G D + + Y +AV+ FQ ++GL G+ TL A+ + Sbjct: 53 QYKLSNWGYYDGAIDGEYGYKTY--TAVRSFQYKNGLTVDGVAGPETLSALGLSTGA 107 >gi|227355699|ref|ZP_03840092.1| ErfK/YbiS/YcfS/YnhG family protein [Proteus mirabilis ATCC 29906] gi|227164018|gb|EEI48915.1| ErfK/YbiS/YcfS/YnhG family protein [Proteus mirabilis ATCC 29906] Length = 305 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 42/175 (24%) Query: 196 VLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L + G + +G++ R+TP + + +++++ +P W P + I+K+ Sbjct: 98 IVINLAELRLYYYPKEGGTVDVYPIGIGQLGRETPEMVTSVSQLIKDPTWT-PTANIRKN 156 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 A P + G N M + + Sbjct: 157 YAAKGITLPAVV----------------------------------PAGPDNPMGAYALR 182 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 Y +H T F +R +SGC+R+ D+ L P SR + Sbjct: 183 LAHSRGEYLIHGTNAD--FGIGLR-VSSGCIRL-RPDDI-ETLFNVVPKGSRVQV 232 >gi|295703756|ref|YP_003596831.1| endopeptidase LytF [Bacillus megaterium DSM 319] gi|294801415|gb|ADF38481.1| endopeptidase LytF (cell wall hydrolase) [Bacillus megaterium DSM 319] Length = 303 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + L G + V+ L++ L G S + F + + +V FQ H L G Sbjct: 24 ALGDKLLKEGMTDPDVKELQDVLRQKG--IFSATSTGYFGSITKDSVLSFQRSHSLTADG 81 Query: 156 MVDSSTLEAM 165 +V S+T +A+ Sbjct: 82 IVGSNTYQAL 91 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 2/81 (2%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 YQ ++ L G +S V+++++ L G + + + F ++ V Sbjct: 88 YQALIGNSTSTVTNGTLLKYGMTSNEVEKVQQLLKEKGYFNATP--TGYFGTVTQTVVMN 145 Query: 145 FQMRHGLDPSGMVDSSTLEAM 165 FQ HGL G+V +T A+ Sbjct: 146 FQRDHGLAVDGIVGPATSNAL 166 >gi|282848940|ref|ZP_06258329.1| 3D domain protein [Veillonella parvula ATCC 17745] gi|282581215|gb|EFB86609.1| 3D domain protein [Veillonella parvula ATCC 17745] Length = 202 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + + G V +++ L G L + + E AV+ FQ GL G V Sbjct: 24 AKTIDRGQRGHHVSKVQTMLKHQGFLH--DSIDGIYGHNTEQAVRKFQKSKGLPVDGRVG 81 Query: 159 SSTLEAM 165 +T+ A+ Sbjct: 82 PATMNAL 88 >gi|156973179|ref|YP_001444086.1| Type II secretory pathway, component ExeA [Vibrio harveyi ATCC BAA-1116] gi|156524773|gb|ABU69859.1| hypothetical protein VIBHAR_00859 [Vibrio harveyi ATCC BAA-1116] Length = 541 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 3/89 (3%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L L ++ L + L + ++ S +D ++ V+LFQ G+ Sbjct: 453 WQAPLKDTLRLDMEGPAIDVLDQLLAQA--VNEQPLGSDIYDGALKERVELFQRWQGIGV 510 Query: 154 SGMVDSSTLEAMNVPVDLRIRQL-QVNLM 181 G+ TLE + V + QL Q+N Sbjct: 511 DGIAGKHTLERLQQSVQIDAPQLKQINEE 539 >gi|38638635|ref|NP_944336.1| gp28 [Burkholderia phage Bcep1] gi|34486017|gb|AAQ73374.1| gp28 [Burkholderia phage Bcep1] Length = 255 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 24/107 (22%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 PL +G S +V L+ RL + S FDA V +A++ +Q HG+ P G+ Sbjct: 2 AAPLIVGASGRAVVFLQARLGL--------AQSGQFDASVATALRQWQEAHGMTPDGVYG 53 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 S T M + + R++ V++PA Sbjct: 54 SQTNAVM---TARALSDIADAAARLR-------------VDVPAFQA 84 >gi|304559115|gb|ADM41779.1| hypothetical protein ETAF_1671 [Edwardsiella tarda FL6-60] Length = 346 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 69/208 (33%), Gaps = 47/208 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYW 244 +L +++N+ L G+ + + +G++ R TP + +R+++ + +P W Sbjct: 62 MLLPDTPREGIVINLAELRLFYYPPGENRVEVYPIGIGQLGRNTPEMVTRVSQHIKDPTW 121 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +I + + + G Sbjct: 122 TPTANI-----------------RRHYQ------------------AQGISLPAVMPAGP 146 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + ++ Y +H T F +R +SGC+R+ D+ L + P Sbjct: 147 DNPMGRFALRLAAQGGVYLIHGTNAD--FGIGMR-VSSGCIRL-RPGDI-EALFRSVPGG 201 Query: 364 SRYHI-----EEVVKTRKTTPVKLATEV 386 +R I + V+ V++ + Sbjct: 202 TRVQIVNQPVKTSVEPDGKRYVEVHQPL 229 >gi|291533118|emb|CBL06231.1| Cell wall-associated hydrolases (invasion-associated proteins) [Megamonas hypermegale ART12/1] Length = 204 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 LG+ + ++ L G + G F ++AV FQ +GLD G+V Sbjct: 6 SASSFRLGDQGAEIAEIQAALASQGYDVTADGD---FGPATQAAVAAFQSANGLDNDGLV 62 Query: 158 DSSTLEAM---NVPVDLR 172 + T + + N+PV R Sbjct: 63 GAMTYQTLMGRNMPVVSR 80 >gi|188993381|ref|YP_001905391.1| putative peptidoglycan binding protein [Xanthomonas campestris pv. campestris str. B100] gi|167735141|emb|CAP53353.1| putative peptidoglycan binding protein [Xanthomonas campestris pv. campestris] Length = 453 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 4/81 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVD 158 L V+ L+E+L G LD + + E+AV+ FQ + L G Sbjct: 254 GVLKRNEQGAPVKELQEKLSKLGYLDAKDAIGT-YGPKTEAAVEKFQQENRLKGVDGKAG 312 Query: 159 SSTLEAM--NVPVDLRIRQLQ 177 TL ++ NV + QL+ Sbjct: 313 PETLASIDKNVQRQEGVEQLR 333 >gi|21233230|ref|NP_639147.1| hypothetical protein XCC3802 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770172|ref|YP_244934.1| hypothetical protein XC_3874 [Xanthomonas campestris pv. campestris str. 8004] gi|21115073|gb|AAM43048.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575504|gb|AAY50914.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 453 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 4/81 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVD 158 L V+ L+E+L G LD + + E+AV+ FQ + L G Sbjct: 254 GVLKRNEQGAPVKELQEKLSKLGYLDAKDAIGT-YGPKTEAAVEKFQQENRLKGVDGKAG 312 Query: 159 SSTLEAM--NVPVDLRIRQLQ 177 TL ++ NV + QL+ Sbjct: 313 PETLASIDKNVQRQEGVEQLR 333 >gi|297201860|ref|ZP_06919257.1| serine/threonine protein kinase [Streptomyces sviceus ATCC 29083] gi|297147990|gb|EDY56806.2| serine/threonine protein kinase [Streptomyces sviceus ATCC 29083] Length = 559 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ V +++ L G G+ F +SAVK FQ GL+ G V +T Sbjct: 494 YGDKGQRVVQVQCMLTKRGYSVGGSGVDGEFGRDTQSAVKQFQSAKGLEVDGQVGPNTWA 553 Query: 164 AM 165 A+ Sbjct: 554 AL 555 >gi|331268987|ref|YP_004395479.1| ErfK/YbiS/YcfS/YnhG family [Clostridium botulinum BKT015925] gi|329125537|gb|AEB75482.1| ErfK/YbiS/YcfS/YnhG family [Clostridium botulinum BKT015925] Length = 307 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 22/139 (15%) Query: 34 SVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGG 93 S++ + IN HSI N+ ++ L++ ++ + + I + + Sbjct: 35 SLIKKSINTESHSIENNTYEKKLSQNKNTLEKNKNNPAVSEIKEKK-------------- 80 Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 PL LG+ V+ L+++L G S G F E+A+ FQ R+ L Sbjct: 81 -----FTPLKLGSRGNEVKTLQQKLNKFGYKINSDG---IFGDSTETAIYDFQKRNDLAR 132 Query: 154 SGMVDSSTLEAMNVPVDLR 172 G+ STL+ +++ + Sbjct: 133 DGIPGKSTLKKLDLEPTEK 151 >gi|261343983|ref|ZP_05971628.1| ErfK/YbiS/YcfS/YnhG family protein [Providencia rustigianii DSM 4541] gi|282568374|gb|EFB73909.1| ErfK/YbiS/YcfS/YnhG family protein [Providencia rustigianii DSM 4541] Length = 349 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 63/185 (34%), Gaps = 42/185 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L V++N+ L N K + + +G++ R TP + + I++++ +P W Sbjct: 88 MLLPSTPRTGVVINLAELRLYYFPANSKKVIVYPIGIGQLGRDTPEMVTSISQLIKDPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + I+K + I + G Sbjct: 148 T-PTTNIRK-----------HYAKQGITL-----------------------PAVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + Y +H T F +R +SGC+R+ D+ L K P Sbjct: 173 ENPMGLYALRLSYGKGEYLIHGTNAD--FGIGMR-VSSGCIRL-RPHDI-EALFKSVPKG 227 Query: 364 SRYHI 368 +R + Sbjct: 228 TRVQV 232 >gi|212633984|ref|YP_002310509.1| ATPase [Shewanella piezotolerans WP3] gi|212555468|gb|ACJ27922.1| ATPase [Shewanella piezotolerans WP3] Length = 531 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%) Query: 94 WPELPIRPLHLGNSS--VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W + +G S+ +Q L L I + S L FD+++E VK FQ +HGL Sbjct: 442 WQAPKSQVNEIGKSANQAQLQWLENSLAIINE--SSPRLVSEFDSHLEQKVKEFQRQHGL 499 Query: 152 DPSGMVDSSTLEAMN 166 G+ + TL +N Sbjct: 500 RADGIAGAQTLVQLN 514 >gi|75907469|ref|YP_321765.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75701194|gb|ABA20870.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 508 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 18/101 (17%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G++ +V RL++RL G P+ + F + AV FQ GL +G+ Sbjct: 213 VKSPVLSEGSTGQAVTRLQQRLRQLGYFSPNPTGN--FRSITRDAVMAFQRNAGLPITGV 270 Query: 157 VDSSTLEAM-------NVP----VDLRIRQLQVNLMRIKKL 186 V+ T A+ N P +R Q R++ L Sbjct: 271 VNQQTWNALGGVAQVPNRPGLSTPQVRDLQ-----QRLRDL 306 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ +V+ +++RL G S L FD Y ++V FQ + L+P+G VDS T Sbjct: 365 LTVGDRGNNVRAVQQRLTQLGFFTGS--LDGYFDEYTRASVASFQQYYQLNPTGNVDSQT 422 Query: 162 LEAMNV 167 +A+N+ Sbjct: 423 WQALNI 428 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 20/110 (18%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +G++ V ++ L G + ++ F + S V FQ + L G+V T Sbjct: 65 KVGSTGSEVAEIQRCLKKLGFFNG--PVNGRFASITRSGVIGFQRANRLAADGVVGGGTQ 122 Query: 163 EAMNV-----------PVDLRI-------RQLQVNLMRIKKLLEQKMGLR 194 A+ DLR+ QLQ NL R++ G Sbjct: 123 RALQRACRSATPGAINSSDLRLGSRGVAVSQLQQNLRRLRYFNGPNTGYF 172 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 6/123 (4%) Query: 44 YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ-TEKAIAFYQDILSRGGWPELPIRPL 102 ++ VN RF + +G + + + T++A+ + G + L Sbjct: 86 FNGPVNGRFASITRSGVIGFQRANRLAADGVVGGGTQRALQRACRSATPG---AINSSDL 142 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 LG+ V+V +L++ L + + F + + AV FQ + + G+V S T Sbjct: 143 RLGSRGVAVSQLQQNLRRLRYFNGPN--TGYFGSETQQAVIRFQRANRIGADGIVGSQTA 200 Query: 163 EAM 165 +A+ Sbjct: 201 QAI 203 Score = 46.4 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 + GG ++P RP G S+ V+ L++RL G + + S+ A+ FQ + Sbjct: 278 ALGGVAQVPNRP---GLSTPQVRDLQQRLRDLGYFNGNPTGSIG--VMTRDAIVRFQRDY 332 Query: 150 GLDPSGMVDSSTLEAMNVPVDLR 172 L G+ D L+A++ + R Sbjct: 333 RLTADGIADVQILQAVSRVWEDR 355 >gi|119512681|ref|ZP_01631754.1| hypothetical protein N9414_14468 [Nodularia spumigena CCY9414] gi|119462648|gb|EAW43612.1| hypothetical protein N9414_14468 [Nodularia spumigena CCY9414] Length = 188 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 5/126 (3%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP 101 S + + D+ + + + + S + T A+++ I R P LP Sbjct: 68 SSAYQLAKDKLLDKIRKKHLSPGSLTLAKNHYTQAKSQNGIKVAARSSPRFSGPALP--T 125 Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+S SV+ L+ L+ +G G AF E+AVK FQ + L G+V T Sbjct: 126 LRFGSSGTSVRVLQRLLVSNGYAIRVDG---AFGPLTETAVKAFQNQRSLGVDGIVGPVT 182 Query: 162 LEAMNV 167 + + + Sbjct: 183 WQQLTI 188 >gi|296330534|ref|ZP_06873012.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674583|ref|YP_003866255.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage-related protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296152216|gb|EFG93087.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412827|gb|ADM37946.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage-related protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 325 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 7/71 (9%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+ G+ V+++++ L + G+ + +AVK FQ HGL Sbjct: 253 TSPMRKGD---DVRQIQKALAALYFYPDKGAKNNGIDGVYGPKTANAVKRFQSMHGLTAD 309 Query: 155 GMVDSSTLEAM 165 G+ T + Sbjct: 310 GIYGPKTKAKL 320 >gi|294791578|ref|ZP_06756726.1| LysM domain protein [Veillonella sp. 6_1_27] gi|294456808|gb|EFG25170.1| LysM domain protein [Veillonella sp. 6_1_27] Length = 189 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + + G V +++ L G L + + E AV+ FQ GL G V Sbjct: 11 AKTIDRGQRGHHVSKVQTMLKHQGFLH--DSIDGIYGHNTEQAVRKFQKSKGLPVDGRVG 68 Query: 159 SSTLEAM 165 +T+ A+ Sbjct: 69 PATMNAL 75 >gi|294793432|ref|ZP_06758569.1| LysM domain protein [Veillonella sp. 3_1_44] gi|294455002|gb|EFG23374.1| LysM domain protein [Veillonella sp. 3_1_44] Length = 189 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + + G V +++ L G L + + E AV+ FQ GL G V Sbjct: 11 AKTIDRGQRGHHVSKVQTMLKHQGFLH--DSIDGIYGHNTEQAVRKFQKSKGLPVDGRVG 68 Query: 159 SSTLEAM 165 +T+ A+ Sbjct: 69 PATMNAL 75 >gi|301059524|ref|ZP_07200437.1| putative Protein ErfK/srfK [delta proteobacterium NaphS2] gi|300446419|gb|EFK10271.1| putative Protein ErfK/srfK [delta proteobacterium NaphS2] Length = 259 Score = 57.5 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 48/165 (29%), Gaps = 49/165 (29%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAV-ENGKV-GLRSTVIVGRVDRQTPILHSRINRIMFN 241 + +L ++ R +++N+ L +G + V +G D TP + N Sbjct: 53 QWILPER-NFRGIVINVAELRLYYYFNDGCPRVMTFPVGIGDRDWPTPAGRFTVREKRVN 111 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W IP S+ + Sbjct: 112 PTWFIPPSL-----------------REKYQVRSI------------------------P 130 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 PG N + I + H T P +V R T GC+R+ Sbjct: 131 PGPDNPLGRYWIGIGNDYGI--HGTDLPW---SVGRLVTRGCIRL 170 >gi|159898674|ref|YP_001544921.1| peptidoglycan binding domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159891713|gb|ABX04793.1| Peptidoglycan-binding domain 1 protein [Herpetosiphon aurantiacus ATCC 23779] Length = 319 Score = 57.5 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 9/95 (9%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 ++ W + G+S +V ++ L G S + F A SAVK FQ Sbjct: 29 VAARTWATVSN-----GDSGDNVYTVQAMLKQRGY---SLTVDGDFGAGTLSAVKSFQSS 80 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN-LMR 182 GL G+V +T E + + V + VN L R Sbjct: 81 KGLSADGVVGPNTWEQLVITVRQGDNNIVVNALQR 115 Score = 54.8 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W +L I + G++++ V L+ +L G S + F A SAVK FQ GL Sbjct: 94 WEQLVI-TVRQGDNNIVVNALQRQLKKHGH---SLTVDGDFGAGTLSAVKSFQSSKGLGA 149 Query: 154 SGMVDSSTLEAMNVPV 169 G+V + T A+ Sbjct: 150 DGIVGADTWAALTGNP 165 >gi|309811412|ref|ZP_07705199.1| peptidoglycan binding domain protein [Dermacoccus sp. Ellin185] gi|308434719|gb|EFP58564.1| peptidoglycan binding domain protein [Dermacoccus sp. Ellin185] Length = 370 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 16/80 (20%) Query: 94 WPELPIRPLHL--------GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 W L G+S V+ ++ +L + + F ESAV F Sbjct: 124 WAALDASSAQPSAGDVVRRGDSGPLVRAIQSKLGV--------NVDGVFGPLTESAVMTF 175 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q HGL G+V + T A+ Sbjct: 176 QRSHGLGVDGVVGAKTTYAL 195 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 8/70 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + +V+ L+ RL + + + +AVK FQ + LD G+V T Sbjct: 72 LTFDSRGEAVKTLQARLALV--------VDGWYGPVTTAAVKDFQRANRLDVDGVVGPRT 123 Query: 162 LEAMNVPVDL 171 A++ Sbjct: 124 WAALDASSAQ 133 >gi|326790802|ref|YP_004308623.1| peptidoglycan-binding protein [Clostridium lentocellum DSM 5427] gi|326541566|gb|ADZ83425.1| Peptidoglycan-binding domain 1 protein [Clostridium lentocellum DSM 5427] Length = 437 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Query: 98 PIRPLHLGNSSVSVQRLR---ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P PL LG+S +V+ ++ R+ + L P + F+ + AVK FQ L Sbjct: 353 PGSPLRLGDSGPAVRTIQMQLNRISQNFPLIPKVAVDGNFNEATQEAVKTFQKIFHLPQD 412 Query: 155 GMVDSSTLEAM 165 G+V ST + Sbjct: 413 GIVGKSTWYEI 423 >gi|190572347|ref|YP_001970192.1| putative peptidoglycan-binding motif protein [Stenotrophomonas maltophilia K279a] gi|190010269|emb|CAQ43877.1| putative peptidoglycan-binding motif protein [Stenotrophomonas maltophilia K279a] Length = 593 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 9/87 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV----AFDAYVESAVKLFQMRHGLDP- 153 + L G+S V +L L+ G ++ FDA AV+ FQ H LDP Sbjct: 301 SQTLKEGSSGRDVLKLESNLVTLGYASAGGQQTLNPDRRFDATTRKAVEDFQRAHNLDPV 360 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNL 180 G +TL A+ D R+LQ NL Sbjct: 361 DGKAGPATLAAI----DRDARELQGNL 383 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 7/73 (9%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV----ESAVKLFQMRHGLDPSGMVDSST 161 + L+ L G L +KG ++ D Y+ A+ FQ +HGL +G+ D+ T Sbjct: 373 DRDAR--ELQGNLAALG-LTDAKGQAIGSDGYLGGGSRHAINAFQQQHGLPATGIADAET 429 Query: 162 LEAMNVPVDLRIR 174 +A+ V R + Sbjct: 430 RQALANEVQQRAQ 442 >gi|294500739|ref|YP_003564439.1| Endopeptidase [Bacillus megaterium QM B1551] gi|294350676|gb|ADE71005.1| Endopeptidase [Bacillus megaterium QM B1551] Length = 225 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + L G + V++L++ L G + SAVK FQ ++GL G Sbjct: 25 ALGDQTLRQGMNHQDVKQLQQTLKNKGYFKGNTTTYFG--TVTTSAVKSFQRKNGLAADG 82 Query: 156 MVDSSTLEAMNV 167 +V T + V Sbjct: 83 IVGKGTYAKLGV 94 >gi|51892856|ref|YP_075547.1| polysaccharide deacetylase [Symbiobacterium thermophilum IAM 14863] gi|51856545|dbj|BAD40703.1| polysaccharide deacetylase [Symbiobacterium thermophilum IAM 14863] Length = 328 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + +R L G++ +V L+ L +G + F E+AV Q +GL G Sbjct: 33 AVSVRALRFGDAGPAVAELQRLLAANGF--DPGPVDGIFGPLTEAAVLAAQRHYGLTVDG 90 Query: 156 MVDSSTLEAMNVPVDL 171 + T+ A+ Sbjct: 91 LAGRMTVGALQSRPQA 106 >gi|125974900|ref|YP_001038810.1| cell wall hydrolase, SleB [Clostridium thermocellum ATCC 27405] gi|256003843|ref|ZP_05428830.1| spore cortex-lytic enzyme [Clostridium thermocellum DSM 2360] gi|281418634|ref|ZP_06249653.1| spore cortex-lytic enzyme [Clostridium thermocellum JW20] gi|125715125|gb|ABN53617.1| cell wall hydrolase, SleB [Clostridium thermocellum ATCC 27405] gi|255992181|gb|EEU02276.1| spore cortex-lytic enzyme [Clostridium thermocellum DSM 2360] gi|281407718|gb|EFB37977.1| spore cortex-lytic enzyme [Clostridium thermocellum JW20] gi|316939111|gb|ADU73145.1| spore cortex-lytic enzyme [Clostridium thermocellum DSM 1313] Length = 233 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 3/94 (3%) Query: 91 RGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 G + +PI L + V RL++RL D ++ +D AV+ FQ + Sbjct: 25 NGRFFIVPITERLAPNMQNEDVVRLQQRLKNWEYYDG--KITGVYDFKTYLAVRDFQKTY 82 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI 183 L +G+ TL AM + R +++ RI Sbjct: 83 NLPVTGIAGEETLAAMGLTTLSRWSEVRAQSSRI 116 >gi|326497859|dbj|BAJ94792.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326518943|dbj|BAJ92632.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326528353|dbj|BAJ93358.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 369 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLS---VAFDAYVESAVKLFQMRHGLDPSGMVDS 159 H+G+ + RL++ L G L + S AFDA +E+AV +Q GL+ +G++D Sbjct: 55 HMGDERDGLARLKDYLSHFGYLSEAPTSSPFSDAFDAELEAAVATYQRNFGLNATGVLDP 114 Query: 160 STLEAMNVP 168 T+ M P Sbjct: 115 PTVSQMVAP 123 >gi|296133608|ref|YP_003640855.1| ErfK/YbiS/YcfS/YnhG family protein [Thermincola sp. JR] gi|296032186|gb|ADG82954.1| ErfK/YbiS/YcfS/YnhG family protein [Thermincola potens JR] Length = 318 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 18/128 (14%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM- 165 S V ++ L G L + +AVK FQ + L +G ++ +TL + Sbjct: 55 SGSEVMDFQQALQYLGFYRG--KLDGVYGLQTYNAVKKFQRSNKLPVNGSINVATLRVLK 112 Query: 166 ---NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 ++P+ + R + G + V+I +L ++ KV V VG Sbjct: 113 KYFDLPLATKTRT------------KGPKGEVRLEVHIKTRTLIVYDDDKVFKTYRVAVG 160 Query: 223 RVDRQTPI 230 + TP+ Sbjct: 161 KNKTPTPV 168 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G V +++++L G L + + +AVK FQ H +G VD Sbjct: 255 LRRGYKGSDVYQVQQKLRELGYLKSTPDG--IYGPATIAAVKKFQKDHDFPVTGEVD 309 >gi|302876319|ref|YP_003844952.1| Peptidase M15A [Clostridium cellulovorans 743B] gi|307687054|ref|ZP_07629500.1| Peptidase M15A [Clostridium cellulovorans 743B] gi|302579176|gb|ADL53188.1| Peptidase M15A [Clostridium cellulovorans 743B] Length = 220 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ V L+++LI G G F Y AVK Q G+ G+V S+T Sbjct: 32 LQSGSTGAEVTALQQKLIRLGFYLGPSGADGDFGQYTVDAVKGIQSASGITTDGIVGSAT 91 Query: 162 ----LEAMNVPV 169 E ++ P Sbjct: 92 NTKITEWLSKPA 103 >gi|269960198|ref|ZP_06174573.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835005|gb|EEZ89089.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 541 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 2/84 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L L ++ L + L + ++ S +D ++ V+LFQ G+ Sbjct: 453 WQAPLKDTLRLDMEGPAIDVLDQLLAQA--VNEQPLGSDIYDGALKERVELFQRWQGIGV 510 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQ 177 G+ TL+ + V + QL+ Sbjct: 511 DGIAGQRTLDRLQQSVQMDAPQLK 534 >gi|307266815|ref|ZP_07548338.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306918156|gb|EFN48407.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 327 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L +G+ V L+ RL + F E AVK +Q GL + Sbjct: 173 PPIEYPTLKIGDKGPFVVNLQARLKSLSF--DPGPIDGIFGRKTEEAVKAYQQSRGLPVT 230 Query: 155 GMVDSSTLEAM 165 G+VD+ T A+ Sbjct: 231 GIVDNVTWNAL 241 >gi|291299342|ref|YP_003510620.1| peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] gi|290568562|gb|ADD41527.1| Peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] Length = 323 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 11/88 (12%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 LGN ++ L +G + AFDA ESAVK FQ GLD G+V T E Sbjct: 41 LGNRGADTLSVQHLLAQAGH---QVEATGAFDAATESAVKKFQESKGLDADGIVGPKTWE 97 Query: 164 AM--NVPV-----DLRIRQLQVNL-MRI 183 A+ N+ ++ Q+Q+N R+ Sbjct: 98 ALAPNLETGASGEAVKALQVQLNAKQRL 125 Score = 41.0 bits (95), Expect = 0.36, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 11/98 (11%) Query: 76 AQTEKAIAFYQD--------ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS 127 A TE A+ +Q+ I+ W L L G S +V+ L+ +L L S Sbjct: 70 AATESAVKKFQESKGLDADGIVGPKTWEALAPN-LETGASGEAVKALQVQLNAKQRL--S 126 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ FD + V+ FQ + +G V+ T + Sbjct: 127 LEVNGTFDDALAGEVRKFQEHAKISATGAVNVETWRNL 164 >gi|119943964|ref|YP_941644.1| general secretion pathway ATPase protein [Psychromonas ingrahamii 37] gi|119862568|gb|ABM02045.1| General secretion pathway ATPase protein [Psychromonas ingrahamii 37] Length = 584 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 4/141 (2%) Query: 24 LSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIA 83 LS + L ++ S + D ++ A + DS +I + I +E Sbjct: 427 LSCYSENTSLKKLKQLNYPSVVRLERDNLESLHAVLYAINDSYQLLIDGQVIEVSETWFN 486 Query: 84 FYQDILSRGGW--PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y W P L G S + L +L + FD + Sbjct: 487 TYWSGELTVLWQAPFELQGNLKFGQQSEQIAWLARQLNKLQGMPIESK--NRFDLPLLQQ 544 Query: 142 VKLFQMRHGLDPSGMVDSSTL 162 V FQ+ +GL G+V TL Sbjct: 545 VMRFQIENGLKDDGIVGERTL 565 >gi|226330340|ref|ZP_03805858.1| hypothetical protein PROPEN_04257 [Proteus penneri ATCC 35198] gi|225201135|gb|EEG83489.1| hypothetical protein PROPEN_04257 [Proteus penneri ATCC 35198] Length = 305 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 42/175 (24%) Query: 196 VLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L + G + +G++ R+TP + + I++++ +P W P + I+K+ Sbjct: 98 IVINLAELRLYYYPKEGGTVDVYPIGIGQLGRETPEMVTSISQLIKDPTWT-PTANIRKN 156 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 A P + G N M + + Sbjct: 157 YAAKGITLPAVV----------------------------------PAGPENPMGAYALR 182 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 Y +H T F +R +SGC+R+ D+ L P SR + Sbjct: 183 LAHSRGEYLIHGTNAD--FGIGLR-VSSGCIRL-RPNDI-ETLFNVVPKGSRVQV 232 >gi|312971054|ref|ZP_07785233.1| peptidoglycan-binding domain 1 domain protein [Escherichia coli 1827-70] gi|310336815|gb|EFQ01982.1| peptidoglycan-binding domain 1 domain protein [Escherichia coli 1827-70] Length = 282 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 33/139 (23%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLDPSKGL 130 LRE L +G LD + L Sbjct: 253 PALREILQRTGMLDGGRKL 271 >gi|312200969|ref|YP_004021030.1| cell wall hydrolase/autolysin [Frankia sp. EuI1c] gi|311232305|gb|ADP85160.1| cell wall hydrolase/autolysin [Frankia sp. EuI1c] Length = 371 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 23/139 (16%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD 87 + A V DE ++ + + F + +D II +T E+A + Sbjct: 26 DGATRAEVFDEDLDRAVRA--------FQQSRGLSVDG---IIGPDTARSLEEA----RH 70 Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQ 146 L P +PL +G+ V L+ERL G D+ S G F ESAV+ FQ Sbjct: 71 GLGDRLLYHAPSQPL-IGD---DVAALQERLSNMGFDVGRSDG---IFGPRTESAVRDFQ 123 Query: 147 MRHGLDPSGMVDSSTLEAM 165 GL+P G TL + Sbjct: 124 RNRGLEPDGRCGPHTLREL 142 >gi|167039388|ref|YP_001662373.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter sp. X514] gi|300914030|ref|ZP_07131347.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X561] gi|307725285|ref|YP_003905036.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X513] gi|166853628|gb|ABY92037.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X514] gi|300890715|gb|EFK85860.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X561] gi|307582346|gb|ADN55745.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X513] Length = 1089 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG++ V+ L+E L I G S F ++AVK FQ ++GL G+V T Sbjct: 319 LKLGSTGNGVKILQETLNIIGY---SLVEDGQFGTRTQAAVKDFQSKNGLTVDGIVGPQT 375 Query: 162 LEAM 165 + + Sbjct: 376 WQKL 379 >gi|308270996|emb|CBX27606.1| hypothetical protein N47_H24280 [uncultured Desulfobacterium sp.] Length = 322 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 48/165 (29%) Query: 186 LLEQKMGLRY-VLVNIPAASLEAV--ENGKVGLRSTVIVGRVDRQTPI-LHSRINRIMFN 241 + +G+R+ +++N+ L ++ K + V +G + TP+ + S I +I N Sbjct: 110 WILPDIGIRHGIVINVAEMRLYYFPDDDTKSVITYPVGIGDEGKDTPLGIFSVIEKIK-N 168 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W +P+SI E P Sbjct: 169 PAWYVPKSI---------------------------------------QLEKPELPAVVP 189 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 PG N M S + S +H T P + GC+R+ Sbjct: 190 PGPDNPMGSRALRL-SIWTVLIHGTNRPWGIGTRN---SHGCIRM 230 >gi|315648072|ref|ZP_07901173.1| spore cortex-lytic enzyme [Paenibacillus vortex V453] gi|315276718|gb|EFU40061.1| spore cortex-lytic enzyme [Paenibacillus vortex V453] Length = 271 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 3/79 (3%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + + G++ V L+ RL G + F + + AVK FQ G+ Sbjct: 39 PTFSQQTIKFGSTGEDVYELQGRLKYLGFYHG--KIDSVFGSKTQGAVKWFQSEFGMKVD 96 Query: 155 GMVDSSTLEAM-NVPVDLR 172 G+V + N D R Sbjct: 97 GVVGPKVKLKLYNATKDFR 115 >gi|227889892|ref|ZP_04007697.1| S41A family carboxy-terminal peptidase [Lactobacillus johnsonii ATCC 33200] gi|227849336|gb|EEJ59422.1| S41A family carboxy-terminal peptidase [Lactobacillus johnsonii ATCC 33200] Length = 483 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V V L++ L G + K ++ FD ++AV FQ HGL G+V+ Sbjct: 394 LKKSMTGVDVATLQQYLTALGYMP--KYVTGVFDDKTKNAVIEFQKAHGLTADGIVNGQV 451 Query: 162 LEAMNVPVDLRIR 174 + + V +++ Sbjct: 452 QAQLYLAVAQKLQ 464 >gi|312876696|ref|ZP_07736676.1| carboxyl-terminal protease [Caldicellulosiruptor lactoaceticus 6A] gi|311796536|gb|EFR12885.1| carboxyl-terminal protease [Caldicellulosiruptor lactoaceticus 6A] Length = 472 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + G+ + V ++RL G L + D +AVK FQ + L PSG++D Sbjct: 381 TKKFKKGDMDLEVLAAQQRLFYLGYLS---SWTAKMDDSTVAAVKKFQKDNRLYPSGVLD 437 Query: 159 SSTLEAMN 166 +T + +N Sbjct: 438 ITTQKKLN 445 >gi|307826384|ref|ZP_07656586.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] gi|307732561|gb|EFO03436.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] Length = 354 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 38/282 (13%), Positives = 86/282 (30%), Gaps = 79/282 (28%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRI--KKLLEQKMG 192 D + + F ++ + + +N VD + + + ++R+ +++L Sbjct: 51 DETLLDVARRF----------LLGQTEIVRLNPDVDRWLVK-KDEIVRLSNRRILPDSPH 99 Query: 193 LRYVLVNIPAASLEAV---ENGK---VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + +NI + + G+ + VGR D +TP+ +++ R + NP W Sbjct: 100 -NGITLNISEYRMYYYPPTKKGQAPQQVMSYAHGVGRQDWKTPLGKTKVARKIMNPEWHP 158 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SI ++ ++ G N Sbjct: 159 PESIRRE-----------------------------------HAANGDPLPVVVPAGPHN 183 Query: 307 AMAS--TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 + + ++ H T + N + T GCVR+ Sbjct: 184 PLGTRALYLDLPGEYRI--HGTDIDKI-NGIGMQITHGCVRMY--------------PKD 226 Query: 365 RYHIEEVVKTRKTTPVKLATEVPV----HFVYISAWSPKDSI 402 I ++V + + + V + +Y+ A + Sbjct: 227 VEEIYDLVSVGTPVYI-VKQPIKVGWLDNVLYVEAHPDLEGE 267 >gi|323165397|gb|EFZ51184.1| peptidoglycan-binding domain 1 domain protein [Shigella sonnei 53G] Length = 282 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 33/139 (23%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQLALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + A E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAAMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QRLRERLIISGDLDPSKGL 130 LRE L +G LD + L Sbjct: 253 PALREILQRTGMLDGGRKL 271 >gi|300853500|ref|YP_003778484.1| spore cortex-lytic enzyme [Clostridium ljungdahlii DSM 13528] gi|300433615|gb|ADK13382.1| spore cortex-lytic enzyme precursor [Clostridium ljungdahlii DSM 13528] Length = 229 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G+ V +++++L G + S + + +AVK FQ ++GL G Sbjct: 35 AVKAVAYYYGSRGNMVIQIQQKLRSWGYYNGS--VDGVYGYQTYTAVKYFQSKNGLKSDG 92 Query: 156 MVDSSTLEAM 165 +V +TL A+ Sbjct: 93 IVGDATLAAL 102 >gi|300785514|ref|YP_003765805.1| muramoyl-pentapeptide carboxypeptidase [Amycolatopsis mediterranei U32] gi|299795028|gb|ADJ45403.1| putative muramoyl-pentapeptide carboxypeptidase [Amycolatopsis mediterranei U32] Length = 242 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 11/83 (13%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA-----FDAYVESAVK 143 W R L G++ V L+ R ++G S F + +AV+ Sbjct: 28 AQAYPW----SRTLKEGSTGADVTELQIR--VAGWAADHAAQSRVSIDGEFGSGTAAAVR 81 Query: 144 LFQMRHGLDPSGMVDSSTLEAMN 166 FQ +GL V +T A+N Sbjct: 82 RFQAAYGLGADAQVGPATQAALN 104 >gi|254481176|ref|ZP_05094421.1| Putative peptidoglycan binding domain protein [marine gamma proteobacterium HTCC2148] gi|214038339|gb|EEB79001.1| Putative peptidoglycan binding domain protein [marine gamma proteobacterium HTCC2148] Length = 560 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+ R L G+SS +V + + L D + F+ ++ V LFQ GL+ Sbjct: 467 PKGFERLLAEGDSSPAVGEVAQ-LFARLDGQAQALTANRFNEALKQRVMLFQGAQGLEAD 525 Query: 155 GMVDSSTLEAMN 166 G++ TL +N Sbjct: 526 GVIGVQTLLKLN 537 >gi|226944381|ref|YP_002799454.1| general secretion pathway protein A [Azotobacter vinelandii DJ] gi|226719308|gb|ACO78479.1| General secretion pathway protein A [Azotobacter vinelandii DJ] Length = 570 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 7/113 (6%) Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQ 112 D AR+ + + ++ T+ + Y + P + R L G+ V Sbjct: 452 DERHARLAVSGEIRTVGLAALTL----RWSGRYVRLQQA---PLIHGRHLSHGSRGADVA 504 Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + +L + F +E V+ FQ +GL G+V + TLE + Sbjct: 505 WVDLQLERWEGRSRPRAGDPLFGDDLERRVRRFQQANGLRADGVVGAQTLERL 557 >gi|167036506|ref|YP_001664084.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038593|ref|YP_001666171.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114935|ref|YP_004185094.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|320116981|ref|YP_004187140.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855340|gb|ABY93748.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166857427|gb|ABY95835.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928026|gb|ADV78711.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|319930072|gb|ADV80757.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1089 Score = 57.5 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG++ V+ L+E L I G S F + E+AV+ FQ ++GL G+V T Sbjct: 319 LKLGSTGNGVKILQETLNIIGY---SLVEDGQFGSGTEAAVRDFQSKNGLTVDGIVGPQT 375 Query: 162 LEAM 165 + + Sbjct: 376 WQKL 379 >gi|330829008|ref|YP_004391960.1| LysM domain-containing protein [Aeromonas veronii B565] gi|328804144|gb|AEB49343.1| LysM domain protein [Aeromonas veronii B565] Length = 318 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 73/210 (34%), Gaps = 50/210 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + +++N+P L GK + + +G + R+TP + + + NP W Sbjct: 96 MLLPDVPREGIVINLPELRLYYFPKGKSEVIVLPIGIGDIGRETPEMTTTVIEKNPNPTW 155 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +P ++R+ +L+ I + PG Sbjct: 156 -VP--------GPMVRK--SWLEQKGITL-----------------------PAVVPPGP 181 Query: 305 INAMASTKIEFYSRNNT--Y-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 N + K Y +H T + F +R ++GC+R+ D+ L K P Sbjct: 182 ENPLG--KFAMRLGYGKRDYLIHGTNKE--FGVGLR-VSAGCIRL-RPDDI-EALFKIVP 234 Query: 362 TWSRYH-----IEEVVKTRKTTPVKLATEV 386 + ++ ++ +++ + + Sbjct: 235 IGTPVRVINQPVKVAIEPDGRRWLEVHSPL 264 >gi|310641615|ref|YP_003946373.1| sporulation specific n-acetylmuramoyl-l-alanineamidase, spore cortex-lytic enzyme [Paenibacillus polymyxa SC2] gi|309246565|gb|ADO56132.1| Sporulation specific N-acetylmuramoyl-L-alanineamidase, spore cortex-lytic enzyme [Paenibacillus polymyxa SC2] Length = 283 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 4/113 (3%) Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQDI-LSRGGWPELPIRPLHLGNSSVSVQRLRER 117 + + + ++ + ++++ Q + ++ P + G+ V L+ R Sbjct: 13 LAASAITYTGLFKNDSAQERAESLSTQQKVTAAQPVQPTFSSEAVDFGSYGQDVYELQSR 72 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST-LEAMNVPV 169 L + G + F + AVK FQ G+ P G+V + T L+ +N Sbjct: 73 LKLLGFF--GGKVDSHFGSSTLKAVKGFQKEFGIRPDGVVGAKTKLKLVNATP 123 >gi|307323213|ref|ZP_07602423.1| Peptidoglycan-binding domain 1 protein [Streptomyces violaceusniger Tu 4113] gi|306890702|gb|EFN21678.1| Peptidoglycan-binding domain 1 protein [Streptomyces violaceusniger Tu 4113] Length = 244 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVDS 159 L LG++ V L++RL+ ++ ++ +D + AV FQ+ +G+ G+ S Sbjct: 175 LTLGDTGPEVTELQKRLLRIPNVYQDGPVNGQYDQSLAQAVSRFQVWYGIRGDANGVYGS 234 Query: 160 STLEAM 165 +T + + Sbjct: 235 ATRQQL 240 >gi|159897497|ref|YP_001543744.1| stage II sporulation D domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159890536|gb|ABX03616.1| Stage II sporulation D domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 462 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 9/90 (10%) Query: 95 PELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P LP P L G+S V+ + L G S AF A E AV+ FQ +GL Sbjct: 332 PSLPAWPSLRNGSSGNDVKAAQYLLRSHGY---SLTADGAFGAGTEQAVRSFQSANGLTA 388 Query: 154 SGMVDSSTLEAM-----NVPVDLRIRQLQV 178 G++ T + N +R +Q Sbjct: 389 DGIIGPQTYAKLIKTVQNGSSGDAVRAIQT 418 Score = 38.3 bits (88), Expect = 2.8, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 8/66 (12%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 I+ + G+S +V+ ++ L ++ + AF A E AV Q + L G+V Sbjct: 401 IKTVQNGSSGDAVRAIQTLLGVT--------VDGAFGAGTEQAVLNLQATYDLTRDGIVG 452 Query: 159 SSTLEA 164 T +A Sbjct: 453 PVTWQA 458 >gi|119485108|ref|ZP_01619493.1| hypothetical protein L8106_06659 [Lyngbya sp. PCC 8106] gi|119457336|gb|EAW38461.1| hypothetical protein L8106_06659 [Lyngbya sp. PCC 8106] Length = 204 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 54/173 (31%), Gaps = 52/173 (30%) Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + L +++ + + N + V VG+ +TP ++ +++ NP W Sbjct: 69 RFLPLGKPKMQLVLRLAQRRVFVYRNDQQVASYPVAVGKPGWETPTGQFQVIQMVENPTW 128 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 Q+P EV PG Sbjct: 129 ----------------QNP-------------WTGEVS------------------SPGP 141 Query: 305 INAMAS--TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 +A+ ++ H TP N++ R + GCVR+RN + ++ Sbjct: 142 NSALGLRWIGFWTDGKDTIGFHGTPTV---NSIGRAASHGCVRMRNEDVVALF 191 >gi|110632447|ref|YP_672655.1| peptidoglycan binding domain-containing protein [Mesorhizobium sp. BNC1] gi|110283431|gb|ABG61490.1| Peptidoglycan-binding domain 1 [Chelativorans sp. BNC1] Length = 143 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 6/74 (8%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G++ V+ L+ L+ +G G + +SAV FQ GL G+ T Sbjct: 2 LRMGSTGARVRELQALLVRAGHALKVDGD---YGPSTKSAVLAFQRFAGLIADGVAGPET 58 Query: 162 LEAMN---VPVDLR 172 + A+ V D R Sbjct: 59 MRALASFKVAPDER 72 >gi|121534304|ref|ZP_01666128.1| ErfK/YbiS/YcfS/YnhG family protein [Thermosinus carboxydivorans Nor1] gi|121307074|gb|EAX47992.1| ErfK/YbiS/YcfS/YnhG family protein [Thermosinus carboxydivorans Nor1] Length = 408 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 61/237 (25%), Gaps = 76/237 (32%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + +++N+P+ +LE + V +G+ TP + I NP+W P Sbjct: 26 DPDIASPNIVINLPSRTLEFYSGSTLVKVYPVAIGKPSTPTPTGNFSIISKEVNPWWFPP 85 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 R G V PG N Sbjct: 86 R----------------------------GGAAV-------------------PPGPDNP 98 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 + + F H T P ++GCVR+ Sbjct: 99 LGYRWMGFLPMYGI--HGTNTPWAIGT---AVSNGCVRMHEA--------------DVEE 139 Query: 368 IEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI--IQFRDDIYGLDNVHVGIIPL 422 + EVV V V V + DIYG +V + I Sbjct: 140 LYEVVPYGTPVKVTYD-RVKVR-------VDAHGNASVGIYPDIYGYSDVTLSEIKR 188 >gi|206577142|ref|YP_002237024.1| peptidoglycan binding domain/papain family cysteine protease [Klebsiella pneumoniae 342] gi|206566200|gb|ACI07976.1| peptidoglycan binding domain/papain family cysteine protease [Klebsiella pneumoniae 342] Length = 962 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPS----KGLSVAFDAYVESAVKLFQMRHGLDPS 154 ++ L G+S V LR+RL + D S FDA + SAV+ +Q G+ Sbjct: 2 VKLLLQGSSGPEVVELRKRLAKTLGADAKMFALPSNSDTFDATLASAVRHWQSNIGIIAD 61 Query: 155 GMVDS 159 G+V Sbjct: 62 GVVGP 66 >gi|291541737|emb|CBL14847.1| ABC-type Fe3+-hydroxamate transport system, periplasmic component [Ruminococcus bromii L2-63] Length = 420 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 34/74 (45%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L L + + +V+ ++ RL G + ++ + AVK FQ +GL +G D++ Sbjct: 347 SLKLEDENDTVKAMQLRLYNIGYIADKDNVTGYYGEVTAEAVKKFQKNNGLKETGTADNA 406 Query: 161 TLEAMNVPVDLRIR 174 TL + + + Sbjct: 407 TLVLLFDSSAKKAK 420 >gi|253681528|ref|ZP_04862325.1| ErfK/YbiS/YcfS/YnhG family [Clostridium botulinum D str. 1873] gi|253561240|gb|EES90692.1| ErfK/YbiS/YcfS/YnhG family [Clostridium botulinum D str. 1873] Length = 307 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL LG++ V+ L+++L G L F E A+ FQ R+ L G+V S Sbjct: 83 PLKLGSNGNEVKALQQKLNKFGY---KINLDGIFGHSTEIAIYDFQKRNDLARDGIVGKS 139 Query: 161 TLEAMNVPVDLR 172 TL+ +++ + Sbjct: 140 TLKKLDLEPTEK 151 >gi|282860963|ref|ZP_06270029.1| Peptidoglycan-binding domain 1 protein [Streptomyces sp. ACTE] gi|282564699|gb|EFB70235.1| Peptidoglycan-binding domain 1 protein [Streptomyces sp. ACTE] Length = 311 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 4/129 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G+SS V+ L+ RL G D S + + E++V+ FQ + GL +G D+ T Sbjct: 106 MKTGDSSDRVRELQARLRQIGHFDRSP--TGYYGTTTEASVRSFQGKRGLPRTGRTDTVT 163 Query: 162 L-EAMNVPVDLRIRQLQVNLMRIKKLL-EQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 +++ + +L+ R + M R + ++ + +L + +GKV V Sbjct: 164 WQRLLDMTREPTADELRPPTERAVAKPDPRCMTGRVLCISKNSRTLAWMIDGKVVSSMDV 223 Query: 220 IVGRVDRQT 228 G T Sbjct: 224 RFGSEYTPT 232 >gi|301066442|ref|YP_003788465.1| periplasmic protease [Lactobacillus casei str. Zhang] gi|300438849|gb|ADK18615.1| Periplasmic protease [Lactobacillus casei str. Zhang] Length = 461 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD +G Sbjct: 371 INATQLKPGDKDSDVKSLQQMLTALK--VGSVTVNSQYDDATQAAVKTFQQANKLDATGT 428 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL + + ++ + Sbjct: 429 ADQDTLATLAQKLSAQLTK 447 >gi|284042364|ref|YP_003392704.1| peptidase M23 [Conexibacter woesei DSM 14684] gi|283946585|gb|ADB49329.1| Peptidase M23 [Conexibacter woesei DSM 14684] Length = 352 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 A + + RG P L RPL G + V L+ L G G +F + AV Sbjct: 88 ATRRALGRRGR-PSLGSRPLRTGLTGWDVAALQFLLHGRGF--GPGGFDGSFGPNTDDAV 144 Query: 143 KLFQMRHGLDPSGMVDSSTLEAM 165 + FQ L G+ +TL A+ Sbjct: 145 RRFQSAASLGVDGVAGPATLAAL 167 Score = 41.4 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 8/30 (26%), Positives = 13/30 (43%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +AV+ Q R L G+ +T A+ Sbjct: 64 PRTLAAVRRIQARRNLAVDGIAGPATRRAL 93 >gi|291298964|ref|YP_003510242.1| zinc D-Ala-D-Ala carboxypeptidase [Stackebrandtia nassauensis DSM 44728] gi|290568184|gb|ADD41149.1| Zinc D-Ala-D-Ala carboxypeptidase [Stackebrandtia nassauensis DSM 44728] Length = 242 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 27/64 (42%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G V++L+ R+ L F A ESAVK FQ +GL G+ S Sbjct: 38 RKLKKGMKGNDVKQLQIRVAGYPGYGNILSLDGEFGARTESAVKRFQKAYGLAADGVAGS 97 Query: 160 STLE 163 T Sbjct: 98 RTFR 101 >gi|222530301|ref|YP_002574183.1| carboxyl-terminal protease [Caldicellulosiruptor bescii DSM 6725] gi|222457148|gb|ACM61410.1| carboxyl-terminal protease [Caldicellulosiruptor bescii DSM 6725] Length = 472 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + G+ + V ++RL G L + D +AVK FQ + L PSG++D Sbjct: 381 TKKFKKGDMDLEVLAAQQRLFYLGYLS---NWTAKMDDSTVAAVKKFQKDNKLYPSGVLD 437 Query: 159 SSTLEAMN 166 +T + +N Sbjct: 438 ITTQKKLN 445 >gi|119488069|ref|ZP_01621513.1| Peptidoglycan-binding domain 1 [Lyngbya sp. PCC 8106] gi|119455358|gb|EAW36497.1| Peptidoglycan-binding domain 1 [Lyngbya sp. PCC 8106] Length = 206 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG +V L+ERL G L F + ++AV Q ++ L P G+V S T Sbjct: 143 LKLGMRGEAVVGLQERLRAKGFLKGQADG--VFGSQTQAAVIAAQEQYKLKPDGVVGSQT 200 Query: 162 LEAM 165 M Sbjct: 201 --WM 202 Score = 44.8 bits (105), Expect = 0.025, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V L+ L + G + + AV FQ L +G+ +S+ Sbjct: 41 TLQTGSQGTEVFELQAALKLLGYYTGE--VDGVYAESTAEAVSQFQKAANLPVTGVTNSA 98 Query: 161 TLEAMNVPVDL 171 T + + P + Sbjct: 99 TWDRL-FPPEE 108 >gi|330815101|ref|YP_004358806.1| Gp43, bacteriophage-acquired protein [Burkholderia gladioli BSR3] gi|327367494|gb|AEA58850.1| Gp43, bacteriophage-acquired protein [Burkholderia gladioli BSR3] Length = 270 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LH + V L++RL+ +G ++ +D E AVK Q GL G+ T Sbjct: 4 LHFNDCGAEVGLLQQRLVRAGY---PLAVTHIYDEATERAVKAVQAAAGLVVDGIAGPKT 60 Query: 162 LEAM 165 A+ Sbjct: 61 YNAL 64 >gi|288556870|ref|YP_003428805.1| peptidoglycan binding domain-containing YocH-like protein [Bacillus pseudofirmus OF4] gi|288548030|gb|ADC51913.1| peptidoglycan binding domain-containing putative YocH-like protein [Bacillus pseudofirmus OF4] Length = 356 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 8/166 (4%) Query: 6 KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDS 65 + N L F + G+ L P + D N + + + + Sbjct: 4 QTNSKLLRNFGLPLATAGVLLFASPAISEASDLGSNLLHKGVDGESVQVVQELLHEKGLL 63 Query: 66 DIPIISKETIAQTEKAIAFYQD---ILSRG--GWPEL-PIRPLHLGNSSVSVQRLRERLI 119 D I+ +T A++ YQ+ ++ G G + ++ L G+ V V+ L+ +L+ Sbjct: 64 DEAAITGTFSKETFDAVSTYQEKHNLVVDGIAGPQTVGAMKVLEKGDEGVLVEDLQHQLV 123 Query: 120 ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 G + +K + ++AVK FQ G+ G+ T + Sbjct: 124 DLGFYEGNKDG--LYGPLTQAAVKGFQKAQGISVDGIAGPETYSNL 167 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LH G SVQ ++E L G LD + ++ F AV +Q +H L G+ T Sbjct: 41 LHKGVDGESVQVVQELLHEKGLLDEAA-ITGTFSKETFDAVSTYQEKHNLVVDGIAGPQT 99 Query: 162 LEAMNV 167 + AM V Sbjct: 100 VGAMKV 105 >gi|325291306|ref|YP_004267487.1| Peptidoglycan-binding domain 1 protein [Syntrophobotulus glycolicus DSM 8271] gi|324966707|gb|ADY57486.1| Peptidoglycan-binding domain 1 protein [Syntrophobotulus glycolicus DSM 8271] Length = 258 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 10/81 (12%) Query: 95 PELPIRP--------LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 P P RP L G+ SV+ L+ L G + F +AV FQ Sbjct: 102 PSAPARPARTQSCPTLREGSRGASVRELQTLLSNHGF--NPGPIDGIFGPRTRAAVVSFQ 159 Query: 147 MRHGLDPSGMVDSSTLEAMNV 167 GL P G+V T A+ V Sbjct: 160 TSKGLSPDGIVGPRTWAALGV 180 Score = 54.8 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G+ SV+ L+ RL G + F + ++AV FQ L P Sbjct: 186 PSTKCPTLRRGSRGSSVRTLQTRLNNQGF--NPGPIDGIFGSRTQAAVIAFQNSRCLSPD 243 Query: 155 GMVDSSTLEAM 165 G+V T A+ Sbjct: 244 GIVGRKTWAAL 254 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G++ +V L+E L++ G + F ++AV FQ L P Sbjct: 4 PPTNYPTLQIGSTGPAVVHLQESLVVQGF--DPGMIDGIFGPKTQAAVIAFQSCCCLVPD 61 Query: 155 GMVDSSTLEAM 165 G+V T A+ Sbjct: 62 GIVGPITWAAL 72 >gi|289665229|ref|ZP_06486810.1| carboxypeptidase [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 446 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 14/123 (11%) Query: 50 DRFDNFLARVDMGIDSDIPIISKE---TIAQTEKAIAFYQDILSRGGWPELPIRPLHLGN 106 D++ + V + P + E + Q + A + + +LSR L G Sbjct: 175 DQYAVYANSVSNSLPDRKPTEAAEKGTSNQQIKGASSNHHAVLSRHD------GKLEQGE 228 Query: 107 SSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 S V++L+ +L G D P F + AV+ FQ H L G+V T Sbjct: 229 RSEQVKQLQGQLAQLGATGRDGKPLHADGD-FGTNTKYAVEQFQRAHALQVDGVVGQQTQ 287 Query: 163 EAM 165 A+ Sbjct: 288 AAL 290 >gi|262170608|ref|ZP_06038286.1| general secretion pathway protein A [Vibrio mimicus MB-451] gi|261891684|gb|EEY37670.1| general secretion pathway protein A [Vibrio mimicus MB-451] Length = 529 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 60 DMGIDSDIPIISKETIAQTEKAIA-----FYQDILSRGGWPELPIRPLHLGNSSVSVQRL 114 + D ++ + + + Y +L +GG+ R L G V L Sbjct: 411 RLNADEAELLVGDQRYRIARQWLEPLWRGQY-SLLWQGGF----SRTLKQGMQGDDVALL 465 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +L L + FD + V+LFQ + G+ TL + Sbjct: 466 ESKLSQV--LGEPERPRDQFDKDLSRKVELFQRWQNMQVDGIAGRQTLRRL 514 >gi|160932600|ref|ZP_02079990.1| hypothetical protein CLOLEP_01439 [Clostridium leptum DSM 753] gi|156868559|gb|EDO61931.1| hypothetical protein CLOLEP_01439 [Clostridium leptum DSM 753] Length = 241 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ V++++ +L G S + + + ++AV FQ + GLDP G+ + TL Sbjct: 52 KYGSQGEEVRQIQTKLKELGLYTGS--IDGIYGSGTKNAVIQFQKQQGLDPDGIAGTKTL 109 Query: 163 EAM 165 A+ Sbjct: 110 TAL 112 >gi|119487720|ref|ZP_01621229.1| endopeptidase, cell wall lytic activity [Lyngbya sp. PCC 8106] gi|119455553|gb|EAW36690.1| endopeptidase, cell wall lytic activity [Lyngbya sp. PCC 8106] Length = 227 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L+ G+ V+ ++ +L G + + + + AVK FQ +GL G+V S Sbjct: 63 SLYYGDYGSDVKDVQHKLAYYGYFSYNA--TGYYGKVTKHAVKAFQRDYGLHVDGVVGPS 120 Query: 161 TLEAM 165 T AM Sbjct: 121 TASAM 125 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V +L+++L G + + + AVK FQ +GL G+ TL AM Sbjct: 172 VTKLQDQLANYGYFH--ANSTGYYGKITKHAVKAFQYDYGLHADGIAGPKTLRAM 224 >gi|220931154|ref|YP_002508062.1| Spore cortex-lytic enzyme SleB [Halothermothrix orenii H 168] gi|219992464|gb|ACL69067.1| Spore cortex-lytic enzyme SleB [Halothermothrix orenii H 168] Length = 239 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 4/84 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L+ G S +V+ ++ +L G + + F AV+ FQ ++GL G+V Sbjct: 42 TLYWGTSGSNVRLVQWKLQQWGYYEG--RIDGYFGPETSEAVREFQRKNGLRVDGLVGPQ 99 Query: 161 TLEAMNVP--VDLRIRQLQVNLMR 182 T A+ RQ + R Sbjct: 100 TWAALGYEARPTTYARQTAAAVSR 123 >gi|258626901|ref|ZP_05721705.1| General secretion pathway protein A [Vibrio mimicus VM603] gi|258580824|gb|EEW05769.1| General secretion pathway protein A [Vibrio mimicus VM603] Length = 529 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 60 DMGIDSDIPIISKETIAQTEKAIA-----FYQDILSRGGWPELPIRPLHLGNSSVSVQRL 114 + D ++ + + + Y +L +GG+ R L G V L Sbjct: 411 RLNADEAELLVGDQRYRIARQWLEPLWRGQY-SLLWQGGF----SRTLKQGMQGDDVALL 465 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +L L + FD + V+LFQ + G+ TL + Sbjct: 466 ESKLSQV--LGEPERPRDQFDKDLSRKVELFQRWQNMQVDGIAGRQTLRRL 514 >gi|269955412|ref|YP_003325201.1| ErfK/YbiS/YcfS/YnhG family protein [Xylanimonas cellulosilytica DSM 15894] gi|269304093|gb|ACZ29643.1| ErfK/YbiS/YcfS/YnhG family protein [Xylanimonas cellulosilytica DSM 15894] Length = 326 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 18/120 (15%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P P P G++ V L++RL+ G + + AV FQ GL Sbjct: 124 PPAPQYPQR-GSTGPEVLALQQRLMDLGYFILKADGD--YGWATQQAVWAFQKAAGLYRD 180 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G+V T A++ + + + V +++ L AVE+G+V Sbjct: 181 GVVGPQTQAALDAGY---------------RPTPRSSSGKVVEIDLDKQILLAVEDGRVV 225 >gi|119773972|ref|YP_926712.1| peptidoglycan binding domain-containing protein [Shewanella amazonensis SB2B] gi|119766472|gb|ABL99042.1| peptidoglycan-binding domain 1 [Shewanella amazonensis SB2B] Length = 613 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 4/75 (5%) Query: 94 WPELPIRPLHLGNSSVS--VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P +G +S VQ L L + P L FD +E+ +KLFQ +HGL Sbjct: 525 WQAPVYSPREIGIASPQPEVQWLENGLAKVDKITP--RLVNEFDTELENRLKLFQRQHGL 582 Query: 152 DPSGMVDSSTLEAMN 166 G+ S TL+ +N Sbjct: 583 KADGIAGSQTLQQLN 597 >gi|308049519|ref|YP_003913085.1| ErfK/YbiS/YcfS/YnhG family protein [Ferrimonas balearica DSM 9799] gi|307631709|gb|ADN76011.1| ErfK/YbiS/YcfS/YnhG family protein [Ferrimonas balearica DSM 9799] Length = 308 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 64/164 (39%), Gaps = 39/164 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + R V++N+ L +N + + +GRV R+TP++ ++I++ + +P W Sbjct: 93 MLLPDVERRGVVINLAELRLYYFDNARGRVYVYPIGIGRVGRETPLVKTKISQRIKDPTW 152 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + +K+ +L++ I + G Sbjct: 153 T-PTANTRKE----------WLEERGIEL-----------------------PRVVPAGP 178 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR 347 N M + N Y +H T F +R ++GC+R+R Sbjct: 179 DNPMGHRALRLSYGNGEYLIHGTNHE--FGIGMR-VSAGCIRMR 219 >gi|59712850|ref|YP_205626.1| general secretion pathway protein A [Vibrio fischeri ES114] gi|59480951|gb|AAW86738.1| general secretion pathway protein A [Vibrio fischeri ES114] Length = 518 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + R + G+ ++ L L+ + L+ S FD E VK FQ GL Sbjct: 435 PIITERAMRKGDEGEAIFAL-NHLLST-ALEQPMIESDFFDEKTEQQVKQFQEIFGLKED 492 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQ 177 G+ SSTL ++ + LQ Sbjct: 493 GIAGSSTLMWLDSVTNANAPLLQ 515 >gi|66768719|ref|YP_243481.1| hypothetical protein XC_2411 [Xanthomonas campestris pv. campestris str. 8004] gi|66574051|gb|AAY49461.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 1264 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 3/79 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L LG+ V+ L+ RL P + + E AV+ FQ GL +G+ Sbjct: 948 LRLGDRGQEVEFLQYRLQQIDARGPNGQAVPQDGHYGPETEHAVRQFQQDQGLPATGVAG 1007 Query: 159 SSTLEAMNVPVDLRIRQLQ 177 A++ R L+ Sbjct: 1008 PDLDAALSQTQHARREALK 1026 >gi|186682191|ref|YP_001865387.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186464643|gb|ACC80444.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 135 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G++ +V+ + L G + ++ FD SAV FQ GL G++ T Sbjct: 73 LTVGSTGEAVKTAQNALKQQGFY--TANVNGVFDNKTRSAVIKFQKSKGLRADGIIGRRT 130 Query: 162 LEAM 165 L ++ Sbjct: 131 LASL 134 >gi|120553059|ref|YP_957410.1| ErfK/YbiS/YcfS/YnhG family protein [Marinobacter aquaeolei VT8] gi|120322908|gb|ABM17223.1| ErfK/YbiS/YcfS/YnhG family protein [Marinobacter aquaeolei VT8] Length = 349 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 26/209 (12%), Positives = 60/209 (28%), Gaps = 51/209 (24%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + + + +++N+ L V VG + +P+ ++++ + +P Sbjct: 104 RMYVLPDVEREGIVINLAEYRLYYFTPDGGVQVYPVGVGTEENPSPLTNAKVTMPLESPA 163 Query: 244 WVIPRSI-----IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF 298 W P SI D + + Sbjct: 164 WYPPASIRAEYEASGDYLPKMI-------------------------------------- 185 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 PG N + + + S +H T + F + + GC R+ +I + Sbjct: 186 --PPGPGNPLGTHALML-SEKGYLIHGTNKQ--FGVGM-PVSHGCFRMYNEDISRFVYQV 239 Query: 357 LKDTPTWSRYHIEEVVKTRKTTPVKLATE 385 K TP ++ + +++ Sbjct: 240 EKGTPVQVIREPVKIGMSGGEVWLEVHRP 268 >gi|168177537|ref|ZP_02612201.1| spore-cortex-lytic enzyme [Clostridium botulinum NCTC 2916] gi|226947425|ref|YP_002802516.1| spore-cortex-lytic enzyme [Clostridium botulinum A2 str. Kyoto] gi|182671104|gb|EDT83078.1| spore-cortex-lytic enzyme [Clostridium botulinum NCTC 2916] gi|226841988|gb|ACO84654.1| spore-cortex-lytic enzyme [Clostridium botulinum A2 str. Kyoto] Length = 231 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 11/100 (11%) Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLH---------LGNSSVSVQRLRERLIISGDLDPS 127 ++AI + I+ G L I P G+ + +++ +L G + Sbjct: 6 YLKRAIIYVLAIMLAYGSTTLYILPYTNATKAVAYYYGHRGDIISQVQRKLKAWGYYNG- 64 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 G+ F +AV+ FQ ++GL G++ TL A+ + Sbjct: 65 -GVDGIFGHQTYTAVRYFQSKNGLTVDGIIGDKTLAALGI 103 >gi|160931660|ref|ZP_02079054.1| hypothetical protein CLOLEP_00491 [Clostridium leptum DSM 753] gi|156869305|gb|EDO62677.1| hypothetical protein CLOLEP_00491 [Clostridium leptum DSM 753] Length = 574 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Query: 98 PIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P P L LG+S V +L++RL G + G + F Y +K FQ + G + +G Sbjct: 201 PAEPVYLQLGSSGAEVAKLQQRLAELGYFN--DGATEYFGEYTAECLKAFQAKAGYEATG 258 Query: 156 MVDSSTLEAM 165 ++D T + Sbjct: 259 ILDPDTEALL 268 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + G++ V L+ RLI+ + S FD E+AVK +Q + L+ +G+VD + Sbjct: 356 IKKGDAGEEVTELQNRLILLRYMIGDA--SGTFDDATEAAVKEYQTTNSLEATGIVDKA 412 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG V+ L+ +L G S FD E AVK F+ +GL +G+ D + Sbjct: 431 LKLGYVGDDVKALQMKLAKLDLY--QGGASGTFDKATEQAVKSFEEENGLRVTGVADLTV 488 Query: 162 LEAM 165 A+ Sbjct: 489 RIAI 492 Score = 37.5 bits (86), Expect = 4.3, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + + ++++LI + + + ++AV FQ GL+ +G+ D++T Sbjct: 284 GEFAEEIHTIQQKLIQLQYMTGE--TTGFYGDQTKAAVAKFQTVVGLESTGVYDNTTRSK 341 Query: 165 M 165 + Sbjct: 342 L 342 >gi|229521273|ref|ZP_04410693.1| general secretion pathway protein A [Vibrio cholerae TM 11079-80] gi|229341805|gb|EEO06807.1| general secretion pathway protein A [Vibrio cholerae TM 11079-80] Length = 529 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 2/72 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W R L G V L +L L + FD + V+LFQ + Sbjct: 445 WQAGFSRTLKQGMQGADVALLESKLAQV--LGEPERPREQFDKDLSRKVELFQRWQNMHV 502 Query: 154 SGMVDSSTLEAM 165 G+ TL + Sbjct: 503 DGIAGRQTLRRL 514 >gi|88859637|ref|ZP_01134277.1| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Pseudoalteromonas tunicata D2] gi|88818654|gb|EAR28469.1| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Pseudoalteromonas tunicata D2] Length = 306 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 41/153 (26%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++VN+P L E + +G+ +TP+ S I++ +P W++P Sbjct: 97 IVVNLPELRLYYFEPEKSQVHVYPIGIGQKGHRTPVTRSFISQKRKSPDWIVPE------ 150 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 L ++ YL + NI V V G N + S + Sbjct: 151 --PLRKR---YLTEKNI---------VLPPIV--------------PAGPDNPLGSYAMR 182 Query: 315 F-YSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 S H T + F + +SGC+R+ Sbjct: 183 LGKSEYLI--HGTNQR--FG-IGLSVSSGCIRM 210 >gi|121730096|ref|ZP_01682499.1| general secretion pathway protein A [Vibrio cholerae V52] gi|147674552|ref|YP_001217947.1| general secretion pathway protein A [Vibrio cholerae O395] gi|262167277|ref|ZP_06034987.1| general secretion pathway protein A [Vibrio cholerae RC27] gi|121628153|gb|EAX60683.1| general secretion pathway protein A [Vibrio cholerae V52] gi|146316435|gb|ABQ20974.1| general secretion pathway protein A [Vibrio cholerae O395] gi|227014337|gb|ACP10547.1| general secretion pathway protein A [Vibrio cholerae O395] gi|262024252|gb|EEY42943.1| general secretion pathway protein A [Vibrio cholerae RC27] Length = 529 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 2/72 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W R L G V L +L L + FD + V+LFQ + Sbjct: 445 WQASFSRTLKQGMQGADVALLESKLAQV--LGEPERPREQFDKDLSRKVELFQRWQNMHV 502 Query: 154 SGMVDSSTLEAM 165 G+ TL + Sbjct: 503 DGIAGRQTLRRL 514 >gi|229524431|ref|ZP_04413836.1| general secretion pathway protein A [Vibrio cholerae bv. albensis VL426] gi|229338012|gb|EEO03029.1| general secretion pathway protein A [Vibrio cholerae bv. albensis VL426] Length = 529 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 2/72 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W R L G V L +L L + FD + V+LFQ + Sbjct: 445 WQAGFSRTLKQGMQGADVALLESKLAQV--LGEPERPREQFDKDLSRKVELFQRWQNMHV 502 Query: 154 SGMVDSSTLEAM 165 G+ TL + Sbjct: 503 DGIAGRQTLRRL 514 >gi|168182186|ref|ZP_02616850.1| spore-cortex-lytic enzyme [Clostridium botulinum Bf] gi|237793523|ref|YP_002861075.1| spore-cortex-lytic enzyme [Clostridium botulinum Ba4 str. 657] gi|182674550|gb|EDT86511.1| spore-cortex-lytic enzyme [Clostridium botulinum Bf] gi|229262004|gb|ACQ53037.1| spore-cortex-lytic enzyme [Clostridium botulinum Ba4 str. 657] Length = 231 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 11/100 (11%) Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLH---------LGNSSVSVQRLRERLIISGDLDPS 127 ++AI + I+ G L I P G+ + +++ +L G + Sbjct: 6 YLKRAIIYVLAIMLAYGSTTLYILPYTNATKAVAYYYGHRGDIISQVQRKLKAWGYYNG- 64 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 G+ F +AV+ FQ ++GL G++ TL A+ + Sbjct: 65 -GVDGIFGHQTYTAVRYFQSKNGLTVDGIIGDKTLAALGI 103 >gi|153831064|ref|ZP_01983731.1| general secretion pathway protein A [Vibrio cholerae 623-39] gi|148873460|gb|EDL71595.1| general secretion pathway protein A [Vibrio cholerae 623-39] Length = 529 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 2/72 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W R L G V L +L L + FD + V+LFQ + Sbjct: 445 WQAGFSRTLKQGMQGADVALLESKLAQV--LGEPERPREQFDKDLSRKVELFQRWQNMHV 502 Query: 154 SGMVDSSTLEAM 165 G+ TL + Sbjct: 503 DGIAGRQTLRRL 514 >gi|153214514|ref|ZP_01949423.1| general secretion pathway protein A [Vibrio cholerae 1587] gi|124115316|gb|EAY34136.1| general secretion pathway protein A [Vibrio cholerae 1587] Length = 529 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 2/84 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W R L G V L +L L + FD + V+LFQ + Sbjct: 445 WQAGFSRTLKQGMQGADVALLESKLAQV--LGEPERPREQFDKDLSRKVELFQRWQNMHV 502 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQ 177 G+ TL + + + L+ Sbjct: 503 DGIAGRQTLRRLELLTQQKAPSLK 526 >gi|119510785|ref|ZP_01629911.1| hypothetical protein N9414_03905 [Nodularia spumigena CCY9414] gi|119464548|gb|EAW45459.1| hypothetical protein N9414_03905 [Nodularia spumigena CCY9414] Length = 84 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 V+++++ L+ +G L + ++ +D ESAV+ FQ GL G+V T + Sbjct: 24 QGEDVRKVQQALVNAGFLS-ANQINGIYDNDTESAVEKFQEEKGLSQDGVVGPQTRRLLG 82 Query: 167 VP 168 + Sbjct: 83 IS 84 >gi|229514071|ref|ZP_04403533.1| general secretion pathway protein A [Vibrio cholerae TMA 21] gi|229349252|gb|EEO14209.1| general secretion pathway protein A [Vibrio cholerae TMA 21] Length = 529 Score = 57.2 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 2/72 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W R L G V L +L L + FD + V+LFQ + Sbjct: 445 WQAGFSRTLKQGMQGADVALLESKLAQV--LGEPERPREQFDKDLSRKVELFQRWQNMHV 502 Query: 154 SGMVDSSTLEAM 165 G+ TL + Sbjct: 503 DGIAGRQTLRRL 514 >gi|254291645|ref|ZP_04962433.1| general secretion pathway protein A [Vibrio cholerae AM-19226] gi|150422417|gb|EDN14376.1| general secretion pathway protein A [Vibrio cholerae AM-19226] Length = 529 Score = 57.2 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 2/72 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W R L G V L +L L + FD + V+LFQ + Sbjct: 445 WQAGFSRTLKQGMQGADVALLESKLAQV--LGEPERPREQFDKDLSRKVELFQRWQNMHV 502 Query: 154 SGMVDSSTLEAM 165 G+ TL + Sbjct: 503 DGIAGRQTLRRL 514 >gi|294499183|ref|YP_003562883.1| autolytic lysozyme [Bacillus megaterium QM B1551] gi|294349120|gb|ADE69449.1| autolytic lysozyme [Bacillus megaterium QM B1551] Length = 433 Score = 57.2 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 32/68 (47%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G+S ++V+ L++ L G G + +AVK FQ ++GL +G Sbjct: 220 PSAQLQQGDSGLAVKELQQNLTKLGFDLSQHGTDGQYGNETTAAVKAFQEKYGLTSTGKA 279 Query: 158 DSSTLEAM 165 D TL M Sbjct: 280 DERTLAKM 287 >gi|300113040|ref|YP_003759615.1| peptidoglycan-binding domain 1 protein [Nitrosococcus watsonii C-113] gi|299538977|gb|ADJ27294.1| Peptidoglycan-binding domain 1 protein [Nitrosococcus watsonii C-113] Length = 683 Score = 57.2 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ SV L++RL G + F + ESAV+ FQ + G+V T Sbjct: 216 LGRGSRGASVIELQKRLSALGFNPGAADG--IFGSRTESAVRAFQHSQRITVDGIVGPQT 273 Query: 162 LEAM 165 + Sbjct: 274 WSRL 277 Score = 45.2 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 10/49 (20%) Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 RL + G L P SAV+ FQ RH L G+V T A+ Sbjct: 499 RLAVDGILGPMTR----------SAVRSFQSRHRLAVDGIVGPHTERAL 537 Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 17/42 (40%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L +S + A++ FQ + GL G+ T A+ Sbjct: 128 LGSRLPVSGVMNRGTRDALRQFQKQQGLPVDGIAGPPTERAL 169 >gi|297581069|ref|ZP_06942994.1| general secretion pathway protein A [Vibrio cholerae RC385] gi|297534895|gb|EFH73731.1| general secretion pathway protein A [Vibrio cholerae RC385] Length = 529 Score = 57.2 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 2/72 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W R L G V L +L L + FD + V+LFQ + Sbjct: 445 WQAGFSRTLKQGMQGADVALLESKLAQV--LGEPERPREQFDKDLSRKVELFQRWQNMHV 502 Query: 154 SGMVDSSTLEAM 165 G+ TL + Sbjct: 503 DGIAGRQTLRRL 514 >gi|300855725|ref|YP_003780709.1| SpoIID-like domain-containing protein [Clostridium ljungdahlii DSM 13528] gi|300435840|gb|ADK15607.1| SpoIID-like domain containing protein [Clostridium ljungdahlii DSM 13528] Length = 852 Score = 57.2 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + PL LG +S V L+ LI G G + F +SAV FQ G+ SG Sbjct: 771 ISTLPLSLGMTSSDVAALQNALIKLGY--NVSGATGYFGTQTKSAVIAFQTDAGIPASGT 828 Query: 157 VDSSTLEAMN 166 V + T A+N Sbjct: 829 VGTWTYSALN 838 >gi|302532090|ref|ZP_07284432.1| predicted protein [Streptomyces sp. C] gi|302440985|gb|EFL12801.1| predicted protein [Streptomyces sp. C] Length = 91 Score = 57.2 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 105 GNSSVSVQRLRERLIIS-GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G++ V+ ++ LI G KG+ F A ESAVK Q HGL G+V + T + Sbjct: 23 GDAGAKVKEIQALLIQHHGYAVGPKGVDGYFGAGTESAVKRLQRGHGLKADGIVSAKTWD 82 Query: 164 AMNVPVDLR 172 + R Sbjct: 83 RLRGEPLDR 91 >gi|153803634|ref|ZP_01958220.1| general secretion pathway protein A [Vibrio cholerae MZO-3] gi|124120834|gb|EAY39577.1| general secretion pathway protein A [Vibrio cholerae MZO-3] Length = 529 Score = 57.2 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 2/72 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W R L G V L +L L + FD + V+LFQ + Sbjct: 445 WQAGFSRTLKQGMQGADVALLESKLAQV--LGEPERPREQFDKDLSRKVELFQRWQNMHV 502 Query: 154 SGMVDSSTLEAM 165 G+ TL + Sbjct: 503 DGIAGRQTLRRL 514 >gi|229527051|ref|ZP_04416446.1| general secretion pathway protein A [Vibrio cholerae 12129(1)] gi|229335448|gb|EEO00930.1| general secretion pathway protein A [Vibrio cholerae 12129(1)] gi|327484937|gb|AEA79344.1| General secretion pathway protein A [Vibrio cholerae LMA3894-4] Length = 529 Score = 57.2 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 2/84 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W R L G V L +L L + FD + V+LFQ + Sbjct: 445 WQAGFSRTLKQGMQGADVALLESKLAQV--LGEPERPREQFDKDLSRKVELFQRWQNMHV 502 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQ 177 G+ TL + + + L+ Sbjct: 503 DGIAGRQTLRRLELLTQQKAPSLK 526 >gi|15642441|ref|NP_232074.1| general secretion pathway protein A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227082566|ref|YP_002811117.1| general secretion pathway protein A [Vibrio cholerae M66-2] gi|229507495|ref|ZP_04397000.1| general secretion pathway protein A [Vibrio cholerae BX 330286] gi|229512310|ref|ZP_04401789.1| general secretion pathway protein A [Vibrio cholerae B33] gi|229519446|ref|ZP_04408889.1| general secretion pathway protein A [Vibrio cholerae RC9] gi|229607000|ref|YP_002877648.1| general secretion pathway protein A [Vibrio cholerae MJ-1236] gi|254849569|ref|ZP_05238919.1| general secretion pathway protein A [Vibrio cholerae MO10] gi|255746883|ref|ZP_05420828.1| general secretion pathway protein A [Vibrio cholera CIRS 101] gi|262162048|ref|ZP_06031064.1| general secretion pathway protein A [Vibrio cholerae INDRE 91/1] gi|298500197|ref|ZP_07010002.1| general secretion pathway protein A [Vibrio cholerae MAK 757] gi|9657021|gb|AAF95587.1| general secretion pathway protein A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227010454|gb|ACP06666.1| general secretion pathway protein A [Vibrio cholerae M66-2] gi|229344135|gb|EEO09110.1| general secretion pathway protein A [Vibrio cholerae RC9] gi|229352275|gb|EEO17216.1| general secretion pathway protein A [Vibrio cholerae B33] gi|229355000|gb|EEO19921.1| general secretion pathway protein A [Vibrio cholerae BX 330286] gi|229369655|gb|ACQ60078.1| general secretion pathway protein A [Vibrio cholerae MJ-1236] gi|254845274|gb|EET23688.1| general secretion pathway protein A [Vibrio cholerae MO10] gi|255735285|gb|EET90685.1| general secretion pathway protein A [Vibrio cholera CIRS 101] gi|262028297|gb|EEY46954.1| general secretion pathway protein A [Vibrio cholerae INDRE 91/1] gi|297540890|gb|EFH76944.1| general secretion pathway protein A [Vibrio cholerae MAK 757] Length = 529 Score = 57.2 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 2/72 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W R L G V L +L L + FD + V+LFQ + Sbjct: 445 WQASFSRTLKQGMQGADVALLESKLAQV--LGEPERPREQFDKDLSRKVELFQRWQNMHV 502 Query: 154 SGMVDSSTLEAM 165 G+ TL + Sbjct: 503 DGIAGRQTLRRL 514 >gi|284041692|ref|YP_003392032.1| peptidoglycan-binding protein [Conexibacter woesei DSM 14684] gi|283945913|gb|ADB48657.1| Peptidoglycan-binding domain 1 protein [Conexibacter woesei DSM 14684] Length = 447 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 8/68 (11%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G+ V++L+ L + D F + A++ FQ RHGLD G+ Sbjct: 105 PRVALEKGDRGRQVKQLQRALGVHAD--------GIFGPGTKKALRKFQARHGLDVDGVA 156 Query: 158 DSSTLEAM 165 S+T A+ Sbjct: 157 GSATWSAL 164 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 8/60 (13%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 N V L+ L I+ D F E+AVK +Q GL+ G+ +T +A+ Sbjct: 255 NEGSGVAALQRALGIAAD--------GEFGPGTEAAVKRYQASRGLEADGVAGPATRDAL 306 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 18/37 (48%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F A++ FQ RHGLD G+V +T A+ Sbjct: 200 PADGVFGPQSIKALRKFQDRHGLDVDGVVGPATWSAL 236 >gi|213966259|ref|ZP_03394443.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium amycolatum SK46] gi|213951111|gb|EEB62509.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium amycolatum SK46] Length = 394 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 12/76 (15%) Query: 102 LHLGNSSVSVQRLRERLIISGDL------------DPSKGLSVAFDAYVESAVKLFQMRH 149 L +G+ S V +R L G L G FD + +A+ FQ Sbjct: 5 LKVGDRSPRVAEVRSTLARLGLLPNWEGSAAEENSPQWSGDDDLFDEDMRNALLAFQQSR 64 Query: 150 GLDPSGMVDSSTLEAM 165 G+ G++ STL + Sbjct: 65 GVYADGIIRDSTLRLL 80 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 10/161 (6%) Query: 41 NESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR 100 N S +D FD + + + + I + + ++ G L Sbjct: 38 NSPQWSGDDDLFDEDMRNALLAFQQSRGVYADGIIRDS--TLRLLREASYTLGTRVLSYD 95 Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL + V L+ L G + F +++V+ +Q+ +GL+P G+ Sbjct: 96 PLSQ-MTGEDVGVLQATLQELGF--HDARVDGHFGPKTDASVREYQLNYGLEPDGICGPV 152 Query: 161 TLEAMNVPVDLRIRQLQVNL----MRIKKLLEQKMGLRYVL 197 TL A++ + R+ VN ++ + + G R V+ Sbjct: 153 TLRALSY-LGRRVTGGSVNAFHEKEILRTMGPKLSGKRIVI 192 >gi|119488672|ref|ZP_01621681.1| endopeptidase, cell wall lytic activity [Lyngbya sp. PCC 8106] gi|119455095|gb|EAW36236.1| endopeptidase, cell wall lytic activity [Lyngbya sp. PCC 8106] Length = 364 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V++L+++L G + + F +AV FQ GL P G+V T Sbjct: 123 LKYRSQGEEVKKLQQQLNNWGF--SAGTVDGIFGRKTRAAVIRFQKYQGLKPDGIVGPKT 180 Query: 162 LEAM 165 +A+ Sbjct: 181 TQAL 184 Score = 54.1 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 27/71 (38%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L GN S +V L++ L + + + E AVK Q H L Sbjct: 45 PVITAEVLRRGNYSQNVVTLQKDLKQAYCFPGDLRSTGYYGQTTEKAVKQLQRIHALQVD 104 Query: 155 GMVDSSTLEAM 165 G+ T A+ Sbjct: 105 GIAGKQTRSAL 115 >gi|325919153|ref|ZP_08181210.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas gardneri ATCC 19865] gi|325550360|gb|EGD21157.1| putative peptidoglycan-binding domain-containing protein [Xanthomonas gardneri ATCC 19865] Length = 606 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G VQ +++ L G D F AV FQ +HGL P G+V Sbjct: 410 LKHGARGGEVQSMQQDLNRLGVRDAQGNRLAEDGRFGDNTREAVIAFQKQHGLQPDGVVG 469 Query: 159 SSTLEAM 165 +T A+ Sbjct: 470 RNTQAAL 476 >gi|111226207|ref|YP_717001.1| N-acetymuramyl-L-alanine amidase [Frankia alni ACN14a] gi|111153739|emb|CAJ65497.1| N-acetymuramyl-L-alanine amidase [Frankia alni ACN14a] Length = 423 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Query: 108 SVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V L+ERL G D+ + G F ESAV+ FQ GLDP G TL + Sbjct: 139 GDDVAALQERLFNMGFDIGRTDG---IFGPRTESAVRDFQRNRGLDPDGRCGPRTLREL 194 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 32/117 (27%), Gaps = 53/117 (45%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLS------------------------------ 131 + LG+ +V +R L G L + S Sbjct: 1 MRLGDQDSAVAEVRAALTYLGFLPVTPRQSGERGEAAPAVARPGESKGVGLPAAAADPAA 60 Query: 132 -----------------------VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 FD +++A++ FQ GL G++ +T A+ Sbjct: 61 AVGVHSPAEEPAGGAGGAAPAPPDRFDRDLDNALRAFQQSRGLSVDGILGPNTARAL 117 >gi|194015382|ref|ZP_03053998.1| M15C subfamily peptidase [Bacillus pumilus ATCC 7061] gi|194012786|gb|EDW22352.1| M15C subfamily peptidase [Bacillus pumilus ATCC 7061] Length = 272 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 7/71 (9%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +PL G V+ ++E L + G+ + +AVK FQ+ HGL Sbjct: 200 TKPLTKG---AGVKAVQEALAAVYYYPDKGAKNNGIDGYYGPKTANAVKRFQLMHGLVAD 256 Query: 155 GMVDSSTLEAM 165 G+ T A+ Sbjct: 257 GIYGPKTKAAL 267 >gi|37526507|ref|NP_929851.1| hypothetical protein plu2616 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785938|emb|CAE14990.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 360 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 65/185 (35%), Gaps = 42/185 (22%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKV-GLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + +++N+ L GK + + +G++ R TP++ + +++++ +P W Sbjct: 88 MLLPDTPRQGIVINLAELRLYYFPKGKNNVIVYPIGIGQLGRNTPVMTTSVSQLIKDPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P I+K Y + I G Sbjct: 148 T-PTKNIRK----------HYAEQGVI------------------------LPAVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + + Y +H T F +R +SGC+R+ D+ L P Sbjct: 173 ENPMGAFALRLAAGRGEYLIHGTNAD--FGIGMR-VSSGCIRL-RPDDI-ETLFNAVPRG 227 Query: 364 SRYHI 368 +R I Sbjct: 228 TRVQI 232 >gi|149189054|ref|ZP_01867342.1| putative general secretion pathway protein A [Vibrio shilonii AK1] gi|148837017|gb|EDL53966.1| putative general secretion pathway protein A [Vibrio shilonii AK1] Length = 554 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 7/87 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L L V+ L E+L L + S FD ++ V++FQ +D Sbjct: 464 WQRELQTTLRLNQQGAQVRLLDEKLSKV--LGGTPSGSDIFDEALKRKVEIFQRWQNIDV 521 Query: 154 SGMVDSSTLEAM-----NVPVDLRIRQ 175 G+ +TL + N P + +Q Sbjct: 522 DGIAGRNTLRKLELLTQNNPPSIEAKQ 548 >gi|261407913|ref|YP_003244154.1| spore cortex-lytic enzyme [Paenibacillus sp. Y412MC10] gi|329922217|ref|ZP_08277934.1| spore cortex-lytic enzyme [Paenibacillus sp. HGF5] gi|261284376|gb|ACX66347.1| spore cortex-lytic enzyme [Paenibacillus sp. Y412MC10] gi|328942330|gb|EGG38599.1| spore cortex-lytic enzyme [Paenibacillus sp. HGF5] Length = 270 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 3/79 (3%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + + G++ V L+ RL G + F + + AVK FQ G+ Sbjct: 39 PTFSQQTIKFGSTGEDVYELQGRLKYLGFYHG--KIDSVFGSKTQGAVKWFQSEFGMKVD 96 Query: 155 GMVDSSTLEAM-NVPVDLR 172 G+V + N D R Sbjct: 97 GIVGPKVKLKLYNATKDFR 115 >gi|156934258|ref|YP_001438174.1| hypothetical protein ESA_02088 [Cronobacter sakazakii ATCC BAA-894] gi|156532512|gb|ABU77338.1| hypothetical protein ESA_02088 [Cronobacter sakazakii ATCC BAA-894] Length = 344 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 50/167 (29%), Gaps = 40/167 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYW 244 +L ++VN+ L G+ + + +G R+TP++ +RI + + NP W Sbjct: 88 MLLPDTPREGIVVNLAELRLYYYPPGENRVEVYPIGIGLTGRETPVMTTRIIQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + + G Sbjct: 148 T-----------------PTAAMRAR------------------SQAQGITLPAVIPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 N + + Y +H T + +R +SGC+R+R Sbjct: 173 NNPLGRFALRLQQGGGEYLIHGTNARS--SIGLRA-SSGCIRMRAAD 216 >gi|295704524|ref|YP_003597599.1| autolytic lysozyme [Bacillus megaterium DSM 319] gi|294802183|gb|ADF39249.1| autolytic lysozyme [Bacillus megaterium DSM 319] Length = 433 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 34/68 (50%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G+S ++V+ L++ LI G +G + + +AVK Q ++GL +G Sbjct: 220 PSAQLQQGDSGLAVKELQQNLIKLGFELSQQGTDGQYGSETVAAVKALQEKYGLTSTGKA 279 Query: 158 DSSTLEAM 165 D TL M Sbjct: 280 DEKTLAKM 287 >gi|261211540|ref|ZP_05925828.1| general secretion pathway protein A/general secretion pathway protein B [Vibrio sp. RC341] gi|260839495|gb|EEX66121.1| general secretion pathway protein A/general secretion pathway protein B [Vibrio sp. RC341] Length = 783 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 12/109 (11%) Query: 60 DMGIDSDIPIISKETIAQTEKAIA-----FYQDILSRGGWPELPIRPLHLGNSSVSVQRL 114 + D ++ + + + Y +L +GG+ R L G V L Sbjct: 411 RLSGDDAELLVGGQRYRIARQWLEPLWRGQY-ALLWQGGF----SRTLKQGMRGDDVALL 465 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +L L + + FD + V+LFQ + G+ TL Sbjct: 466 ESKLAQV--LGEPERSTDLFDKDISRKVELFQRWQSMHVDGIAGKQTLR 512 >gi|330830167|ref|YP_004393119.1| Gp28-like protein [Aeromonas veronii B565] gi|328805303|gb|AEB50502.1| Gp28-like protein [Aeromonas veronii B565] Length = 273 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 5/79 (6%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G++ +V L+ RL +G + F E A+ FQ + + G Sbjct: 2 SLKKGDTGTAVADLQRRLTAAGY---PLAVDGWFGEATEQALIAFQRDYMIAAIGQAGPR 58 Query: 161 TLEAMNVPVDLRIRQLQVN 179 TL A+ R QL +N Sbjct: 59 TLAALLGS--ERGNQLTIN 75 >gi|317047896|ref|YP_004115544.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. At-9b] gi|316949513|gb|ADU68988.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. At-9b] Length = 344 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 68/211 (32%), Gaps = 48/211 (22%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFN 241 ++ LL +++N+ L G+ + + +G++ TP++ + I++ + N Sbjct: 88 LQMLLPDTPHEG-IVINLAELRLYYYPKGEDRVIVYPIGIGQLGAATPVMVTSISQKIPN 146 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W +I ++ I + Sbjct: 147 PTWTPTPNIRKR------------YAKEGITL-----------------------PGVVP 171 Query: 302 PGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 G N M + Y +H T F +R +SGC+R+ D+ L Sbjct: 172 AGPDNPMGLFAMRLARGTGQYLIHGTNAD--FGIGMR-VSSGCIRL-RPEDI-EALFDSV 226 Query: 361 PTWSRYH-----IEEVVKTRKTTPVKLATEV 386 P +R ++ ++ +++ + Sbjct: 227 PKGTRVQVINQPVKYAIEPDGKRYIEVHQPL 257 >gi|297563684|ref|YP_003682658.1| peptidoglycan-binding protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848132|gb|ADH70152.1| Peptidoglycan-binding domain 1 protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 245 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 96 ELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + P L G+S V ++ERL G G+ F + E AV Q G+ Sbjct: 43 SVSTGPELRQGSSGAGVSAVQERLAELGYWI--DGVDGQFGFHTEQAVVALQKAAGIARD 100 Query: 155 GMVDSSTLEAM 165 G+V +T A+ Sbjct: 101 GVVGPATRAAL 111 >gi|229916617|ref|YP_002885263.1| carboxyl-terminal protease [Exiguobacterium sp. AT1b] gi|229468046|gb|ACQ69818.1| carboxyl-terminal protease [Exiguobacterium sp. AT1b] Length = 467 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ +V L + L G G + + +AVK FQ +GL+ SG VD Sbjct: 379 SLQVGDYGDAVSNLHKILTGIGYEPG--GQPGYYGDTMANAVKAFQTDNGLEASGTVDEE 436 Query: 161 TLEAM 165 T A+ Sbjct: 437 TASAL 441 >gi|295704058|ref|YP_003597133.1| L-alanyl-D-glutamate peptidase [Bacillus megaterium DSM 319] gi|294801717|gb|ADF38783.1| L-alanyl-D-glutamate peptidase [Bacillus megaterium DSM 319] Length = 231 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+ + G+ VQ ++ LI G G F + AVK FQ L Sbjct: 153 PKASSMLIKYGDRGNHVQLIQRMLIHLGY-SLFGGADGIFGSSTFKAVKAFQQALYLQVD 211 Query: 155 GMVDSSTLEAM 165 G+V TLE + Sbjct: 212 GIVGPKTLEKL 222 >gi|223985219|ref|ZP_03635303.1| hypothetical protein HOLDEFILI_02609 [Holdemania filiformis DSM 12042] gi|223962797|gb|EEF67225.1| hypothetical protein HOLDEFILI_02609 [Holdemania filiformis DSM 12042] Length = 639 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 9/113 (7%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLII----SGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 P P L LG+ +V ++ L + G+ + F A E+AV+ FQ R G Sbjct: 523 PAYPGTSLRLGSRGENVSIMQMALNVINQGWGN-SNQLVVDGIFGAATEAAVRAFQTRVG 581 Query: 151 LDPSGMVDSSTLEAM----NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 L G++ +T A+ +V + + + N + L E L Y + N Sbjct: 582 LTADGIIGRNTWGAISEQYSVATNNAVALSEQNFELYRFLYENYTSLMYAIDN 634 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 4/72 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 P L G S SV ++ +L ++ P+ + F E+AVK FQ + L Sbjct: 334 SFPGLNLQRGVRSDSVAIIQNQLNRIAVNYPNIPPTYPIDGIFGEGTENAVKAFQRQFSL 393 Query: 152 DPSGMVDSSTLE 163 G+V T Sbjct: 394 TADGIVGKGTWY 405 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P R L G+ +V VQ ++ L P+ + +F A +AV FQ GL Sbjct: 434 PGRALRQGDRNVYVQEIQFYLQKIALFTSRVPTVKIDSSFGASTRNAVVAFQKLAGLTAD 493 Query: 155 GMVDSSTLEAM 165 G+V T + + Sbjct: 494 GIVGRQTWDIL 504 >gi|313893325|ref|ZP_07826899.1| 3D domain protein [Veillonella sp. oral taxon 158 str. F0412] gi|313442094|gb|EFR60512.1| 3D domain protein [Veillonella sp. oral taxon 158 str. F0412] Length = 202 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + + G V +++ L G L + + E AV+ FQ GL G V Sbjct: 24 AKTIDKGQRGHHVSKVQTMLKHQGFLH--DSVDGIYGHNTEQAVRKFQKSKGLAVDGRVG 81 Query: 159 SSTLEAM 165 ST+ A+ Sbjct: 82 PSTMNAL 88 >gi|329122079|ref|ZP_08250687.1| cell wall lytic enzyme [Dialister micraerophilus DSM 19965] gi|327466886|gb|EGF12402.1| cell wall lytic enzyme [Dialister micraerophilus DSM 19965] Length = 422 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + + L +G + L+ L+ +G L ++ + + + E AV LFQ GL +G Sbjct: 20 ISAKTLKIGMKGQEITALQNSLVAAGYL--ARTVDSEYGSTTEKAVSLFQKDKGLTITGE 77 Query: 157 VDSSTLEAM 165 D TL+A+ Sbjct: 78 ADEKTLKAI 86 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ ++ ++ +L G LD + + E+AVK Q + GL SG +D T+ Sbjct: 185 GDVGKDIENIQTKLQEYGYLDG--DIDGIYGNDTETAVKKLQEKSGLAISGSIDEETMRE 242 Query: 165 M 165 + Sbjct: 243 L 243 Score = 44.4 bits (104), Expect = 0.030, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +G+S V L+ +LI+ G F E+AVKLFQ + L+ +G+ DS ++ Sbjct: 261 IGDSGTDVGELQNKLILHGYNPGIADG--FFGNDTETAVKLFQKDNNLEVTGIADSVVIK 318 Query: 164 AM 165 + Sbjct: 319 KL 320 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 10/111 (9%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 I+ E +T KAI ++ R G + + GN + V++ ++ L SG L+ Sbjct: 73 TITGEADEKTLKAIKKAENKGYRNGGGIVYAK----GNLGIEVEKWQKVLYESGCLNG-- 126 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 + + +AV+LFQ + + SG +D TL A+ + R ++ + Sbjct: 127 DVDGIYGTETFNAVELFQKNNDIPVSGAIDEMTLSAL----EKRKEKIDLA 173 >gi|313891696|ref|ZP_07825303.1| peptidoglycan binding domain protein [Dialister microaerophilus UPII 345-E] gi|313119974|gb|EFR43159.1| peptidoglycan binding domain protein [Dialister microaerophilus UPII 345-E] Length = 422 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + + L +G + L+ L+ +G L ++ + + + E AV LFQ GL +G Sbjct: 20 ISAKTLKIGMKGQEITALQNSLVAAGYL--ARTVDSEYGSTTEKAVSLFQKDKGLTITGE 77 Query: 157 VDSSTLEAM 165 D TL+A+ Sbjct: 78 ADEKTLKAI 86 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ ++ ++ +L G LD + + + E+AVK Q + GL SG +D T+ Sbjct: 185 GDVGKDIENIQTKLQEYGYLDG--DIDGIYGSDTENAVKKLQEKSGLAISGSIDEETMRE 242 Query: 165 M 165 + Sbjct: 243 L 243 Score = 45.6 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 10/111 (9%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 I+ E +T KAI ++ R G + + GN + V++ ++ L SG L+ Sbjct: 73 TITGEADEKTLKAIKKAENKGYRNGGGIVYAK----GNLGIEVEKCQKVLYESGYLNG-- 126 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 + + +AVKLFQ + + SG +D TL A+ + R ++ + Sbjct: 127 DVDGIYGTETFNAVKLFQKNNDIPVSGAIDEMTLSAL----EKRKEKIDLA 173 Score = 44.1 bits (103), Expect = 0.045, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +G+S V L+ +LI+ G F E+AVKLFQ + L+ +G+ DS ++ Sbjct: 261 IGDSGTDVGELQNKLILHGYNPGIADG--FFGNDTETAVKLFQKDNNLEVTGIADSVVIK 318 Query: 164 AM 165 + Sbjct: 319 NL 320 >gi|125974454|ref|YP_001038364.1| cell wall hydrolase, SleB [Clostridium thermocellum ATCC 27405] gi|281418980|ref|ZP_06249998.1| spore cortex-lytic enzyme [Clostridium thermocellum JW20] gi|125714679|gb|ABN53171.1| cell wall hydrolase, SleB [Clostridium thermocellum ATCC 27405] gi|281407437|gb|EFB37697.1| spore cortex-lytic enzyme [Clostridium thermocellum JW20] Length = 234 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 4/94 (4%) Query: 81 AIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 AI F+++I S G+ + + + G++ V+ ++ +L I + + Y+ Sbjct: 21 AIVFWEEIYSLYGYSKAALS--YYGSTGQEVKNIQYKLAIWKYYNGKIDGIYGYKTYM-- 76 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 AV+ FQ ++GL G+ TL A+ +P + Sbjct: 77 AVRKFQAKNGLKVDGIAGPETLAALGLPTGQAAK 110 >gi|269797668|ref|YP_003311568.1| 3D domain protein [Veillonella parvula DSM 2008] gi|269094297|gb|ACZ24288.1| 3D domain protein [Veillonella parvula DSM 2008] Length = 202 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + + G V +++ L G L + + E AV+ FQ GL G V Sbjct: 24 AKTIDRGQRGHHVSKVQTMLKNQGFLH--DSIDGIYGHNTEQAVRKFQKSKGLAVDGRVG 81 Query: 159 SSTLEAM 165 +T+ A+ Sbjct: 82 PATMNAL 88 >gi|17231786|ref|NP_488334.1| hypothetical protein all4294 [Nostoc sp. PCC 7120] gi|17133430|dbj|BAB75993.1| all4294 [Nostoc sp. PCC 7120] Length = 508 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 18/96 (18%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ +V RL++RL G P+ + F AV FQ + GL +G+V+ T Sbjct: 218 LSEGSTGQAVTRLQQRLRQLGYFSPNPTGN--FRGITRDAVMAFQRKAGLPITGVVNQQT 275 Query: 162 LEAM-------NVP----VDLRIRQLQVNLMRIKKL 186 A+ N P +R Q R++ L Sbjct: 276 WNALGGVAQAPNRPGLSTPQVRDLQ-----QRLRDL 306 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 6/123 (4%) Query: 44 YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ-TEKAIAFYQDILSRGGWPELPIRPL 102 ++ VN RF + +G + + + T++A+ + G + L Sbjct: 86 FNGPVNGRFASITRSGVIGFQRANRLAADGVVGGGTQRALQRACRSATPG---AISRGDL 142 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 LG+ +V +L++ L + + F + + AV FQ + + G+V + T Sbjct: 143 RLGSRGAAVSQLQQNLRRLRYFNGPN--TGYFGSETQQAVIRFQRANRIGADGIVGNQTA 200 Query: 163 EAM 165 +A+ Sbjct: 201 QAI 203 Score = 54.8 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ +V+ +++RL G S L FD Y ++V FQ + L+P+G VDS T Sbjct: 365 LTVGDRGNNVRAVQQRLTQLGFFTGS--LDGYFDEYTRASVASFQQYYQLNPTGNVDSQT 422 Query: 162 LEAMNV 167 +A+N+ Sbjct: 423 WQALNI 428 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 20/110 (18%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +G++ V ++ L G + ++ F + S V FQ + L G+V T Sbjct: 65 KVGSTGSEVAEIQRCLKRLGFFNG--PVNGRFASITRSGVIGFQRANRLAADGVVGGGTQ 122 Query: 163 EAMN------------------VPVDLRIRQLQVNLMRIKKLLEQKMGLR 194 A+ + QLQ NL R++ G Sbjct: 123 RALQRACRSATPGAISRGDLRLGSRGAAVSQLQQNLRRLRYFNGPNTGYF 172 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + P G S+ V+ L++RL G + + S+ A A+ FQ + L G+ Sbjct: 282 VAQAPNRPGLSTPQVRDLQQRLRDLGYFNGNPTGSIG--AMTRDAIVRFQRDYRLTADGI 339 Query: 157 VDSSTLEAMNVPVDLR 172 D L+A++ + R Sbjct: 340 ADVQILQAVSRVWEDR 355 >gi|260891972|ref|YP_003238069.1| spore cortex-lytic enzyme [Ammonifex degensii KC4] gi|260864113|gb|ACX51219.1| spore cortex-lytic enzyme [Ammonifex degensii KC4] Length = 228 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L+ G++ V R+++RL G D + F AV+ FQ ++GL G+V + Sbjct: 32 TLYWGSTGWHVMRVQQRLAQWGYYDG--PIDGVFGYKTWKAVRYFQWKNGLAVDGVVGPA 89 Query: 161 TLEAMNVP 168 T A+ P Sbjct: 90 TWAALGFP 97 >gi|222056278|ref|YP_002538640.1| Peptidoglycan-binding domain 1 protein [Geobacter sp. FRC-32] gi|221565567|gb|ACM21539.1| Peptidoglycan-binding domain 1 protein [Geobacter sp. FRC-32] Length = 320 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 +G+S V +++ L +G F ++AV+ FQ GL G+V + Sbjct: 3 SYRIGSSGDDVMLIQKALQDAGFYQSQPDG--VFGPNTDAAVRNFQAASGLGGDGIVGPA 60 Query: 161 TLEAM 165 T + Sbjct: 61 TWAKL 65 >gi|149882927|ref|YP_001294864.1| endolysin [Burkholderia phage BcepNY3] gi|148763578|gb|ABR10561.1| endolysin [Burkholderia phage BcepNY3] Length = 255 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 24/107 (22%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 PL +G S +V L+ RL + S FDA V +A++ +Q HG+ P G+ Sbjct: 2 AAPLIVGASGRAVVFLQSRLGL--------AQSGQFDAGVATALRQWQEAHGMTPDGVYG 53 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASL 205 S T M + + R++ V++PA Sbjct: 54 SQTNAVM---TARALSDIADAAARLR-------------VDVPAFQA 84 >gi|15893974|ref|NP_347323.1| spore cortex-lytic protein [Clostridium acetobutylicum ATCC 824] gi|15023563|gb|AAK78663.1|AE007583_10 Spore cortex-lytic enzyme prepeptide; peptodoglycan-binding domain [Clostridium acetobutylicum ATCC 824] gi|325508100|gb|ADZ19736.1| Spore cortex-lytic enzyme prepeptide [Clostridium acetobutylicum EA 2018] Length = 234 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 2/76 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + G++ V +++ +L G + + +AVK FQ ++G+ P G Sbjct: 34 AVNAITYKYGSNGSGVIQIQTKLKNWGYYTG--KIDGVYGYQTYTAVKKFQTKNGILPDG 91 Query: 156 MVDSSTLEAMNVPVDL 171 +V ++T A+ + Sbjct: 92 IVGTATSAALGMTTTQ 107 >gi|300853874|ref|YP_003778858.1| D-glutamyl-meso-diaminopimelate peptidase [Clostridium ljungdahlii DSM 13528] gi|300433989|gb|ADK13756.1| D-glutamyl-meso-diaminopimelate peptidase [Clostridium ljungdahlii DSM 13528] Length = 423 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LG+ V +++ L G + + E AVK FQ +GL P G++ S+T Sbjct: 4 FKLGSRGTQVMKIQAVLRKIGY--NLNTIDGIYGRETEQAVKNFQKNNGLAPDGIIGSNT 61 Query: 162 LEAM 165 + Sbjct: 62 YRVL 65 >gi|260597669|ref|YP_003210240.1| hypothetical protein CTU_18770 [Cronobacter turicensis z3032] gi|260216846|emb|CBA30361.1| Uncharacterized protein ynhG [Cronobacter turicensis z3032] Length = 344 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 50/172 (29%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L ++VN+ L G+ + +G R+TP++ +RI + + NP W Sbjct: 88 MLLPDTPREGIVVNLAELRLYYYPPGENRVAVYPIGIGLTGRETPVMTTRIIQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 P + G Sbjct: 148 T-----------------PTAAMRAR------------------SQAHGVTLPAVIPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + Y +H T + +R +SGC+R+R ++ Sbjct: 173 NNPLGRFALRLQQGGGEYLIHGTNARS--SIGLRA-SSGCIRMRAADIKALF 221 >gi|90580763|ref|ZP_01236566.1| putative general secretion pathway protein A [Vibrio angustum S14] gi|90438031|gb|EAS63219.1| putative general secretion pathway protein A [Vibrio angustum S14] Length = 523 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 25/169 (14%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESY---HSIVNDRFDNFLARVDMGIDS 65 +I F L L+ +P+ ++ D Y ++I +DR + L + + + Sbjct: 362 RISLACFSGKATLAKLGLINRPVIVTLKDGAQKPFYAVLYAITDDRIELLLGKERISV-- 419 Query: 66 DIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLI-ISGD 123 P + + P L + + G + V L ++L G+ Sbjct: 420 -TPKWFESRWDGQFSLLWR----------PPLGDKTSIRFGQNGPRVAWLDQQLNDFLGE 468 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL----EAMNVP 168 P KG FD + ++ FQ L G+ TL AMN+P Sbjct: 469 ESPRKG---YFDQSILDKLRRFQRSQDLAADGIAGPMTLMVLDSAMNLP 514 >gi|319760997|ref|YP_004124934.1| peptidase c1a papain [Alicycliphilus denitrificans BC] gi|317115558|gb|ADU98046.1| peptidase C1A papain [Alicycliphilus denitrificans BC] Length = 966 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%) Query: 97 LPIRPLHLGNSSVSVQRLRERLII-SGD----LDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P L G+ V RLR+ L+ GD FDA +++A++ +Q GL Sbjct: 1 MPTYLLRQGSQDPLVARLRKVLVAELGDAAESYPQLDKGGATFDAMLDAALRCWQNGRGL 60 Query: 152 DPSGMVDSSTLEAM 165 G+V L A+ Sbjct: 61 IADGIVGPCNLLAL 74 >gi|291545287|emb|CBL18396.1| Putative peptidoglycan binding domain [Ruminococcus sp. 18P13] Length = 272 Score = 56.8 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + G V+ ++ +L+ G ++ AFD AV+ FQ+ + G+V Sbjct: 206 PTDTVKPGAEGEDVKWIQWQLVRQG---AELEITGAFDEDTRQAVQAFQIDRDMKADGIV 262 Query: 158 DSSTLEAM 165 T E + Sbjct: 263 GEETREKL 270 >gi|227873353|ref|ZP_03991613.1| peptidoglycan-binding domain 1 [Oribacterium sinus F0268] gi|227840789|gb|EEJ51159.1| peptidoglycan-binding domain 1 [Oribacterium sinus F0268] Length = 455 Score = 56.8 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 LG + +++ RL G L S ++ FD E+AVK Q + L G V +T Sbjct: 162 KLGFQGDDITKIQYRLYNLGYLTESGQINGTFDQDTETAVKKLQEVNKLTIDGTVGQTTY 221 Query: 163 EAMNVPVDLRIRQLQV 178 + +++ + + Sbjct: 222 NLL-YSDEVKANIIAL 236 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G + V+ L++RL+ G ++ + + + AV+ FQ + G G+ T Sbjct: 89 LTVGVINSVVKDLQQRLMNLGYMEEDEP-TTYYGDATSKAVQYFQRQTGRKMDGITGVDT 147 Query: 162 LEAM 165 +A+ Sbjct: 148 WDAL 151 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 11/121 (9%) Query: 45 HSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHL 104 +N FD + + T+ QT + Y D E+ + L Sbjct: 186 SGQINGTFDQDTETAVKKLQEVNKLTIDGTVGQTTYNL-LYSD--------EVKANIIAL 236 Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S V++ + RLI G L + F ++A++ FQ R+ G + T Sbjct: 237 GEQSEIVKKYQNRLIALGYLSGEADGN--FGLSTQNAIRAFQSRNDQVVDGYLGPDTRSL 294 Query: 165 M 165 M Sbjct: 295 M 295 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + LG S V+ ++ L+ G L S F + AV FQ +GL G + T Sbjct: 305 MRLGEQSDDVKNMQNLLVKYGYLS-QDKASGYFGELTKDAVIAFQSVNGLGTDGTAGAKT 363 Query: 162 LEAM 165 L+ + Sbjct: 364 LQLL 367 >gi|238019607|ref|ZP_04600033.1| hypothetical protein VEIDISOL_01476 [Veillonella dispar ATCC 17748] gi|237863805|gb|EEP65095.1| hypothetical protein VEIDISOL_01476 [Veillonella dispar ATCC 17748] Length = 202 Score = 56.4 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + + G V +++ L G L + + E AV+ FQ GL G V Sbjct: 24 AKTIDRGQRGHHVSKVQTMLKHQGFLH--DSVDGIYGHNTEQAVRKFQKSKGLAVDGRVG 81 Query: 159 SSTLEAM 165 ST+ A+ Sbjct: 82 PSTMNAL 88 >gi|330822859|ref|YP_004386162.1| peptidase C1A papain [Alicycliphilus denitrificans K601] gi|329308231|gb|AEB82646.1| peptidase C1A papain [Alicycliphilus denitrificans K601] Length = 966 Score = 56.4 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%) Query: 97 LPIRPLHLGNSSVSVQRLRERLII-SGD----LDPSKGLSVAFDAYVESAVKLFQMRHGL 151 +P L G+ V RLR+ L+ GD FDA +++A++ +Q GL Sbjct: 1 MPTYLLRQGSQDPLVARLRKVLVAELGDAAESYPQLDKGGATFDAMLDAALRCWQNGRGL 60 Query: 152 DPSGMVDSSTLEAM 165 G+V L A+ Sbjct: 61 IADGIVGPCNLLAL 74 >gi|328887419|emb|CCA60658.1| putative peptidoglycan binding domain 1 [Streptomyces venezuelae ATCC 10712] Length = 415 Score = 56.4 bits (135), Expect = 8e-06, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V++L E L G + + + A +AVK +Q H L +G V Sbjct: 176 RTLKTGDKGKDVRQLEENLAALGYV--GFDVDEEYTAKTAAAVKRWQKSHDLKQTGTVGP 233 Query: 160 STLE 163 + Sbjct: 234 DQIA 237 >gi|328954135|ref|YP_004371469.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfobacca acetoxidans DSM 11109] gi|328454459|gb|AEB10288.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfobacca acetoxidans DSM 11109] Length = 346 Score = 56.4 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 57/163 (34%), Gaps = 40/163 (24%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + +L + +L+N+P +L + R + VG+ D QTP I + NP Sbjct: 89 RFILPNDLTDG-LLINLPELTLYHFDKEVFRRRYALAVGKSDWQTPTGTYIILNKVKNPT 147 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W++P SI Q++M ++ ++ R PG Sbjct: 148 WIVPASI-QEEM-----------EEMGKTVLT-----------------------RVPPG 172 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 N + + S +H T P + GC+R+ Sbjct: 173 PTNPLGAY-WMATSAPGVGIHATTRPWSIGYYA---SHGCIRM 211 >gi|327385617|gb|AEA57091.1| S41A family carboxy-terminal peptidase [Lactobacillus casei BD-II] Length = 461 Score = 56.4 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD +G Sbjct: 371 INATQLKPGDKGSDVKSLQQMLTALK--VGSVTVNSQYDDATQAAVKTFQQANKLDATGT 428 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL + + ++ + Sbjct: 429 ADQDTLATLAQKLSAQLTK 447 >gi|291453033|ref|ZP_06592423.1| peptidoglycan-binding domain 1 [Streptomyces albus J1074] gi|291355982|gb|EFE82884.1| peptidoglycan-binding domain 1 [Streptomyces albus J1074] Length = 320 Score = 56.4 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 13/96 (13%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 GGWP L G S +V ++ + G + + +AVK FQ GL Sbjct: 189 GGWPR-----LDPGASGATVVVVQRLMTQRGH---QLVADGQYGSVSVAAVKKFQAAQGL 240 Query: 152 DPSGMVDSSTLEAM-----NVPVDLRIRQLQVNLMR 182 G V +T + ++ LQ L R Sbjct: 241 VADGQVGPATWPKLVLTLRQGSSGQQVSALQTALNR 276 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 9/85 (10%) Query: 86 QDILSRGG-----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 Q +++ G WP+L + L G+S V L+ L + +F + + Sbjct: 238 QGLVADGQVGPATWPKLVL-TLRQGSSGQQVSALQTALNRR---SAGLVVDGSFGSVTTT 293 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAM 165 AV+ +Q + L G T A+ Sbjct: 294 AVRAYQSLNRLVVDGEAGPVTWRAL 318 >gi|227535121|ref|ZP_03965170.1| Carboxy-terminal processing proteinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187262|gb|EEI67329.1| Carboxy-terminal processing proteinase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 390 Score = 56.4 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD +G Sbjct: 300 INATQLKPGDKGSDVKSLQQMLTALK--VGSVTVNSQYDDATQAAVKTFQQANKLDATGT 357 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL + + ++ + Sbjct: 358 ADQDTLATLAQKLSAQLTK 376 >gi|191638388|ref|YP_001987554.1| Carboxy-terminal processing proteinase [Lactobacillus casei BL23] gi|190712690|emb|CAQ66696.1| Carboxy-terminal processing proteinase [Lactobacillus casei BL23] gi|327382417|gb|AEA53893.1| S41A family carboxy-terminal peptidase [Lactobacillus casei LC2W] Length = 483 Score = 56.4 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD +G Sbjct: 393 INATQLKPGDKGSDVKSLQQMLTALK--VGSVTVNSQYDDATQAAVKTFQQANKLDATGT 450 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL + + ++ + Sbjct: 451 ADQDTLATLAQKLSAQLTK 469 >gi|116494881|ref|YP_806615.1| periplasmic protease [Lactobacillus casei ATCC 334] gi|116105031|gb|ABJ70173.1| Periplasmic protease [Lactobacillus casei ATCC 334] Length = 461 Score = 56.4 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + L G+ V+ L++ L S ++ +D ++AVK FQ + LD +G Sbjct: 371 INATQLKPGDKGSDVKSLQQMLTALK--VGSVTVNSQYDDATQAAVKTFQQANKLDATGT 428 Query: 157 VDSSTLEAMNVPVDLRIRQ 175 D TL + + ++ + Sbjct: 429 ADQDTLATLAQKLSAQLTK 447 >gi|75910618|ref|YP_324914.1| glycoside hydrolase family protein [Anabaena variabilis ATCC 29413] gi|75704343|gb|ABA24019.1| Glycoside hydrolase, family 24 [Anabaena variabilis ATCC 29413] Length = 243 Score = 56.4 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+ V L+E L+ DP + F E+AVK FQ + + P G+V+ Sbjct: 4 TETLRKGSKGSEVSELQEILVKLKF-DPGRIDGD-FGNKTEAAVKQFQQKQNITPDGVVE 61 Query: 159 SSTLEAMNVPVDLRIRQLQV 178 +T A+N + +I ++ Sbjct: 62 INTRNALNKAIQRQIEIAKL 81 >gi|239981165|ref|ZP_04703689.1| hypothetical protein SalbJ_17134 [Streptomyces albus J1074] Length = 305 Score = 56.4 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 13/96 (13%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 GGWP L G S +V ++ + G + + +AVK FQ GL Sbjct: 174 GGWPR-----LDPGASGATVVVVQRLMTQRGH---QLVADGQYGSVSVAAVKKFQAAQGL 225 Query: 152 DPSGMVDSSTLEAM-----NVPVDLRIRQLQVNLMR 182 G V +T + ++ LQ L R Sbjct: 226 VADGQVGPATWPKLVLTLRQGSSGQQVSALQTALNR 261 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 9/85 (10%) Query: 86 QDILSRGG-----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 Q +++ G WP+L + L G+S V L+ L + +F + + Sbjct: 223 QGLVADGQVGPATWPKLVL-TLRQGSSGQQVSALQTALNRR---SAGLVVDGSFGSVTTT 278 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAM 165 AV+ +Q + L G T A+ Sbjct: 279 AVRAYQSLNRLVVDGEAGPVTWRAL 303 >gi|161503528|ref|YP_001570640.1| hypothetical protein SARI_01604 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864875|gb|ABX21498.1| hypothetical protein SARI_01604 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 333 Score = 56.4 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L V+VN+ L G+ + +G +TP++ +RI + + NP W Sbjct: 88 MLLPDAPREGVVVNLAELRLYYYPAGENRVQVYPIGIGLQGLETPVMDTRIGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + + G Sbjct: 148 TPTAGIRQRSL------------ERGITL---------PPVI--------------PAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|160945978|ref|ZP_02093204.1| hypothetical protein FAEPRAM212_03511 [Faecalibacterium prausnitzii M21/2] gi|158443709|gb|EDP20714.1| hypothetical protein FAEPRAM212_03511 [Faecalibacterium prausnitzii M21/2] Length = 156 Score = 56.4 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 6/152 (3%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINE--SYHSI-VNDRFDNFLARVDMGIDSDIPIISKE 73 Y +L G S + + + L+ + + Y ++ + +F R + Sbjct: 7 YSLLQRGSSGPDVALVQTWLNGVRDACTWYDALKADGKFGASTQRAVQEFQLKNKMNMDG 66 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + Q + + + G P LH G+S +V+ ++++L G+ G Sbjct: 67 KVGQNTWNVLYTRYTAKHGLKVPYPGIVLHTGSSGGTVRLVQQKLNSLGERLKDDGK--- 123 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + A +AV+ FQ R+GL G V +T E M Sbjct: 124 YGAATAAAVQRFQRRNGLPADGSVGCATWEKM 155 >gi|308172757|ref|YP_003919462.1| bacteriophage SPbeta N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens DSM 7] gi|307605621|emb|CBI41992.1| bacteriophage SPbeta N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens DSM 7] Length = 385 Score = 56.4 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%) Query: 107 SSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +V++++ L P+ G+ A+ +AVK FQ+ +GL G+ T Sbjct: 318 RGAAVKQIQTALAALYYYPDKGAPNNGIDGAYGPKTANAVKRFQLMNGLTADGIYGPKTK 377 Query: 163 EAM 165 + Sbjct: 378 AKL 380 >gi|237654227|ref|YP_002890541.1| peptidoglycan-binding protein [Thauera sp. MZ1T] gi|237625474|gb|ACR02164.1| Peptidoglycan-binding domain 1 protein [Thauera sp. MZ1T] Length = 274 Score = 56.4 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 8/79 (10%) Query: 95 PELPIR------PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 P +P + + G + + ++E G ++ + AF E+A++ FQ Sbjct: 193 PSIPRKDAEDRPTIRRGATGNPIFLVKEVQRKLGF--GAQQVDGAFGPLTEAAMRRFQRA 250 Query: 149 HGLDPSGMVDSSTLEAMNV 167 HGL P G+V T +A++ Sbjct: 251 HGLVPDGIVGPRTWKALDT 269 >gi|159901702|ref|YP_001547948.1| N-acetylmuramoyl-L-alanine amidase [Herpetosiphon aurantiacus ATCC 23779] gi|159894741|gb|ABX07820.1| N-acetylmuramoyl-L-alanine amidase family 2 [Herpetosiphon aurantiacus ATCC 23779] Length = 356 Score = 56.4 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 5/91 (5%) Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 QT K + I+ W L IR + LG+S +V+ ++ RL G S G F A Sbjct: 271 QTAKGLTV-NGIIGAATWESL-IRTVRLGDSGDAVRAVQTRLAAQGYTTTSDG---QFTA 325 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + + VK FQ L G+V ++ + + Sbjct: 326 TLNALVKTFQTNRQLSVDGVVGINSWNHLAM 356 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 23/119 (19%) Query: 75 IAQTEKAIAFYQDILSRGG-WPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 + Q A+ + + G WP L P L LR S Sbjct: 206 LPQLRAAVETHLAGGNVGRMWPTLKRNTPATSLAKTAQY----LLRTH-------GASIT 254 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV-------DLRIRQLQVNLM 181 AF E+AVK FQ GL +G++ ++T E++ V +R Q ++ Sbjct: 255 ADGAFGPATEAAVKAFQTAKGLTVNGIIGAATWESLIRTVRLGDSGDAVRAVQTRLAAQ 313 >gi|78223669|ref|YP_385416.1| peptidoglycan binding domain-containing protein [Geobacter metallireducens GS-15] gi|78194924|gb|ABB32691.1| Peptidoglycan-binding domain 1 [Geobacter metallireducens GS-15] Length = 562 Score = 56.4 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 +P R L G S +V +L+E L +G + +S +D + A++ FQ GLD G Sbjct: 455 IPSR-LKPGGRSKAVGQLQELLKGAGYY--AGRISGTYDTVTQEAIRSFQTAEGLDADGR 511 Query: 157 VDSSTLEAM 165 TL + Sbjct: 512 TGEKTLLLL 520 >gi|317509441|ref|ZP_07967059.1| N-acetylmuramoyl-L-alanine amidase [Segniliparus rugosus ATCC BAA-974] gi|316252270|gb|EFV11722.1| N-acetylmuramoyl-L-alanine amidase [Segniliparus rugosus ATCC BAA-974] Length = 409 Score = 56.4 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 28/88 (31%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKG----------------------------LSVA 133 L G+ V +R L G L G + Sbjct: 4 LRRGDIGPEVIAVRAVLEELGFLHSRNGSANPNLASATAARTEFGSVASANGSETKVEAL 63 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSST 161 FDA ++ AV+ FQ G+ G+V +T Sbjct: 64 FDAELDLAVRAFQQHRGMLVDGIVGPAT 91 Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V L+ RL G + F + + +Q GL P G+ +TL ++ Sbjct: 115 MVGDDVADLQARLHDLGFY--MGLVDGYFGPKTHNGLVSYQREFGLTPDGICGPATLRSL 172 Query: 166 N 166 N Sbjct: 173 N 173 >gi|186682281|ref|YP_001865477.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186464733|gb|ACC80534.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 155 Score = 56.4 bits (135), Expect = 9e-06, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P+ L+ G+S ++V+ L+ L+ +G G + A E+AVK FQ + L G+V Sbjct: 89 PMPTLYFGSSGLAVRVLQRLLVANGYAVRVDG---IYGALTETAVKAFQNQQNLGTDGIV 145 Query: 158 DSSTLEAMNV 167 T A+ Sbjct: 146 GQRTWRALTT 155 >gi|332652765|ref|ZP_08418510.1| spore cortex-lytic enzyme SleC [Ruminococcaceae bacterium D16] gi|332517911|gb|EGJ47514.1| spore cortex-lytic enzyme SleC [Ruminococcaceae bacterium D16] Length = 408 Score = 56.4 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+ V+ L+ L ++ + + S + + AV+ +Q + GL G+V Sbjct: 282 LRPGDRGSDVRILQYMLALTAEFNESLTPIRVDGIYGNATAQAVRKYQAQAGLQVDGIVG 341 Query: 159 SSTLEAM 165 +T ++ Sbjct: 342 PNTWYSL 348 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 4/72 (5%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P PL LG++ V L+ + + ++ FD E AVK FQ L P Sbjct: 180 PGTPLRLGSTGDDVLVLKTMINRVSQSYPAIPKLFPVTNVFDESTEQAVKTFQQIFNLTP 239 Query: 154 SGMVDSSTLEAM 165 G+V +T + Sbjct: 240 DGIVGKATWYKL 251 >gi|225180948|ref|ZP_03734396.1| cell wall hydrolase SleB [Dethiobacter alkaliphilus AHT 1] gi|225168429|gb|EEG77232.1| cell wall hydrolase SleB [Dethiobacter alkaliphilus AHT 1] Length = 249 Score = 56.4 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R + + V L+E L G D F +++ FQ HGL+P G+V Sbjct: 36 RTIRITMRGEDVAELQEFLNEQGYRDEDAHG--IFGPLTYGSLQQFQKDHGLNPDGIVGP 93 Query: 160 STLE 163 T Sbjct: 94 KTRR 97 >gi|330503105|ref|YP_004379974.1| PG-binding-1 domain-containing protein [Pseudomonas mendocina NK-01] gi|328917391|gb|AEB58222.1| PG-binding-1 domain-containing protein [Pseudomonas mendocina NK-01] Length = 285 Score = 56.4 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ S +VQ+L+ L +G G F E AV+ +Q++ GL G+ T Sbjct: 7 LRHGDKSQAVQQLQWALNAAGARLEPDGD---FGDETEKAVRAYQLKVGLVVDGVAGEKT 63 Query: 162 LEAMNVPVDLRI---RQLQVNLMRI 183 L A+ R+ L R+ Sbjct: 64 LSALAGADCSRLLKNATLVAAAKRL 88 >gi|328910876|gb|AEB62472.1| bacteriophage SPbeta N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens LL3] Length = 385 Score = 56.4 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%) Query: 107 SSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +V++++ L P+ G+ A+ +AVK FQ+ +GL G+ T Sbjct: 318 RGAAVKQIQTALAALYYYPDKGAPNNGIDGAYGPKTANAVKRFQLMNGLTADGIYGPKTK 377 Query: 163 EAM 165 + Sbjct: 378 AKL 380 >gi|49083720|gb|AAT51122.1| PA2854 [synthetic construct] Length = 324 Score = 56.4 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 47/157 (29%), Gaps = 42/157 (26%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 V++N+ L G+ V + +GR +PI ++RI +P W P SI + Sbjct: 98 VVINLAEYRLYYYPKGQNVVHTYPLGIGREGWGSPIANTRITAKTKDPAWYPPASIRAE- 156 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ + PG N + K+ Sbjct: 157 ----------------------------------HAADGDPLPTVVPPGPDNPLGPYKLT 182 Query: 315 FYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 H + + F R + GC R+ N Sbjct: 183 LGVPGYLI--HGSNKK--FGIGTRT-SHGCFRMYNAD 214 >gi|89075907|ref|ZP_01162282.1| putative general secretion pathway protein A [Photobacterium sp. SKA34] gi|89048348|gb|EAR53926.1| putative general secretion pathway protein A [Photobacterium sp. SKA34] Length = 523 Score = 56.4 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 60/169 (35%), Gaps = 25/169 (14%) Query: 9 KILYCFFVYLILPMGLSLVEKPIHASVLDEIINESY---HSIVNDRFDNFLARVDMGIDS 65 +I F L L+ +P+ ++ D Y ++I +DR + L + + + Sbjct: 362 RISLACFSGKATLAKLGLINRPVIVTLKDGAQKPFYAVLYAITDDRIELLLGKERISV-- 419 Query: 66 DIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSVQRLRERLI-ISGD 123 P + + P L + + G + V L ++L G+ Sbjct: 420 -TPNWFESRWDGQFSLLWR----------PPLGDKTSIRFGQNGPRVAWLDQQLNDFLGE 468 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL----EAMNVP 168 P KG FD + ++ FQ L G+ TL AMN+P Sbjct: 469 ESPRKG---YFDQSILDKLRRFQRSQDLAADGIAGPMTLMVLDSAMNLP 514 >gi|328880763|emb|CCA54002.1| hypothetical protein SVEN_0715 [Streptomyces venezuelae ATCC 10712] Length = 130 Score = 56.4 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 +P G+S + V L+E + G + F A +SAV+ FQ HGL Sbjct: 55 IPRYDYSQGDSDICVAGLQELVARFGLTSWEQSGGNFTDGVFGARTDSAVRRFQSNHGLA 114 Query: 153 PSGMVDSSTLEAM 165 P G+V T E + Sbjct: 115 PDGIVGPRTWEKL 127 >gi|302872715|ref|YP_003841351.1| carboxyl-terminal protease [Caldicellulosiruptor obsidiansis OB47] gi|302575574|gb|ADL43365.1| carboxyl-terminal protease [Caldicellulosiruptor obsidiansis OB47] Length = 472 Score = 56.4 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + G+ + V ++RL G L + D +AVK FQ + L PSG++D Sbjct: 381 TKKFKNGDMDLEVLAAQQRLFYLGYLS---SWTAKMDDSTVAAVKKFQKDNKLYPSGVLD 437 Query: 159 SSTLEAMN 166 +T + +N Sbjct: 438 ITTQKKLN 445 >gi|288554519|ref|YP_003426454.1| putative spore cortex-lytic enzyme precursor [Bacillus pseudofirmus OF4] gi|288545679|gb|ADC49562.1| putative spore cortex-lytic enzyme precursor [Bacillus pseudofirmus OF4] Length = 207 Score = 56.4 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++S V+ L+++LI LD + + + AV+ FQ GL G+ +T Sbjct: 31 LKQGDTSAEVEELQKQLIQLDYLDTDA--TGYYGPQTDQAVRNFQSDFGLVVDGLAGVAT 88 >gi|239832519|ref|ZP_04680848.1| peptidoglycan binding domain-containing protein [Ochrobactrum intermedium LMG 3301] gi|239824786|gb|EEQ96354.1| peptidoglycan binding domain-containing protein [Ochrobactrum intermedium LMG 3301] Length = 299 Score = 56.4 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G SV ++ L +G S + F A E AV+ FQ H L G+V T Sbjct: 229 LRRGMRGPSVANVQRALRAAGFYHMS--IDGVFGAGTEQAVRSFQREHRLVSDGLVGRKT 286 Query: 162 LEAM 165 A+ Sbjct: 287 FAAL 290 >gi|15598050|ref|NP_251544.1| hypothetical protein PA2854 [Pseudomonas aeruginosa PAO1] gi|107102403|ref|ZP_01366321.1| hypothetical protein PaerPA_01003465 [Pseudomonas aeruginosa PACS2] gi|116050857|ref|YP_790320.1| hypothetical protein PA14_27180 [Pseudomonas aeruginosa UCBPP-PA14] gi|218890947|ref|YP_002439813.1| putative ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas aeruginosa LESB58] gi|254235841|ref|ZP_04929164.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254241520|ref|ZP_04934842.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296388659|ref|ZP_06878134.1| putative ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas aeruginosa PAb1] gi|313108000|ref|ZP_07794167.1| putative ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas aeruginosa 39016] gi|9948942|gb|AAG06242.1|AE004712_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115586078|gb|ABJ12093.1| putative ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126167772|gb|EAZ53283.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126194898|gb|EAZ58961.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218771172|emb|CAW26937.1| putative ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas aeruginosa LESB58] gi|310880669|gb|EFQ39263.1| putative ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas aeruginosa 39016] Length = 323 Score = 56.4 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 47/157 (29%), Gaps = 42/157 (26%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 V++N+ L G+ V + +GR +PI ++RI +P W P SI + Sbjct: 98 VVINLAEYRLYYYPKGQNVVHTYPLGIGREGWGSPIANTRITAKTKDPAWYPPASIRAE- 156 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ + PG N + K+ Sbjct: 157 ----------------------------------HAADGDPLPTVVPPGPDNPLGPYKLT 182 Query: 315 FYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 H + + F R + GC R+ N Sbjct: 183 LGVPGYLI--HGSNKK--FGIGTRT-SHGCFRMYNAD 214 >gi|330448768|ref|ZP_08312415.1| putative peptidoglycan binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492959|dbj|GAA06912.1| putative peptidoglycan binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 522 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 8/81 (9%) Query: 94 W-PELPIR-PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P L + + G + V L ++L L + FD V ++ FQ L Sbjct: 435 WRPPLGDKTSIRFGQNGPRVAWLDQQLN--DFLGENSPRKGYFDQSVLDKLRRFQRSQDL 492 Query: 152 DPSGMVDSSTL----EAMNVP 168 G+ TL AMN+P Sbjct: 493 TADGIAGPMTLMVLDSAMNLP 513 >gi|295696768|ref|YP_003590006.1| carboxyl-terminal protease [Bacillus tusciae DSM 2912] gi|295412370|gb|ADG06862.1| carboxyl-terminal protease [Bacillus tusciae DSM 2912] Length = 473 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 3/82 (3%) Query: 95 PELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P L I RP+ ++ SV+ ++ L G F + A++ FQ GL P Sbjct: 376 PPLSITRPITPDSTDTSVKIMQNFLEALGYFPG--RTDGYFSSQTAEALRAFQHAKGLSP 433 Query: 154 SGMVDSSTLEAMNVPVDLRIRQ 175 +G++D T A+N V + +Q Sbjct: 434 TGILDQDTAAALNDAVLAKEKQ 455 >gi|254412420|ref|ZP_05026194.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180730|gb|EDX75720.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] Length = 178 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 8/84 (9%) Query: 88 ILSRGGWPELPIRP------LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 I+ W L L+ G+ V ++ L ++ D S + F E A Sbjct: 78 IVDSLTWQALYQGAPVNMPVLNRGSRHDMVIPVQWVLHLTQDY--SAPIDGDFGEQTERA 135 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAM 165 V+ FQ RHGL G+V T A+ Sbjct: 136 VRSFQKRHGLVEDGVVSEPTWYAL 159 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 8/77 (10%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+ V L++ L G + FD V AV FQ L G+VDS T Sbjct: 26 LQLGSVGAEVLELQKLLAHCGTYTG--PMGGYFDRSVHDAVMEFQQSMFLKADGIVDSLT 83 Query: 162 LEAM------NVPVDLR 172 +A+ N+PV R Sbjct: 84 WQALYQGAPVNMPVLNR 100 >gi|298292414|ref|YP_003694353.1| peptidoglycan-binding protein [Starkeya novella DSM 506] gi|296928925|gb|ADH89734.1| Peptidoglycan-binding domain 1 protein [Starkeya novella DSM 506] Length = 174 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 8/64 (12%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G + V+ L+E+L + D F E A+K +Q +HGL G+ T Sbjct: 4 LKKGLAGAPVKILQEKLGVPAD--------GRFGPKTEEALKAYQKQHGLSADGIAGPDT 55 Query: 162 LEAM 165 A+ Sbjct: 56 FAAL 59 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 27/131 (20%) Query: 39 IINESYHSIVNDRFDNFLARVDMGIDSDIPI--ISKETIA--QTEKAIAFYQDILSRGGW 94 I+ E + RF + + + + +S + IA T A+ Y+ IL Sbjct: 15 ILQEKLGVPADGRF---GPKTEEALKAYQKQHGLSADGIAGPDTFAALGLYELIL----- 66 Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 L +G S +V++L+ L I G F AVK +Q +GL+ Sbjct: 67 -------LKVGTSGETVKKLQSALGI--------GADGKFGPGTAKAVKEYQAANGLEAD 111 Query: 155 GMVDSSTLEAM 165 G +TL + Sbjct: 112 GYAGPATLAKL 122 >gi|283833341|ref|ZP_06353082.1| protein ErfK/srfK [Citrobacter youngae ATCC 29220] gi|291070982|gb|EFE09091.1| protein ErfK/srfK [Citrobacter youngae ATCC 29220] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 67/206 (32%), Gaps = 43/206 (20%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL ++VN+ L G+ + + +G +TP++ +RI + + NP W Sbjct: 88 LLLPDAPREGIIVNLAELRLYYYPPGENIVQVFPIGIGLQGLETPVMETRIGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I ++ + + I + G Sbjct: 148 TPTAGIRKRSL------------ERGITL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + + N Y +H T P ++V +SGC+R+ ++ T T Sbjct: 173 NNPLGRFALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALFAQVRTGTP 229 Query: 364 SR---YHIEEVVKTRKTTPVKLATEV 386 R I+ ++ V++ + Sbjct: 230 VRVINEPIKYSIEPNGMRYVEVHRPL 255 >gi|302536402|ref|ZP_07288744.1| lipoprotein [Streptomyces sp. C] gi|302445297|gb|EFL17113.1| lipoprotein [Streptomyces sp. C] Length = 288 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 9/135 (6%) Query: 99 IRPLHL-GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 +PL G+ S V+ L+ RL + + + + + +AVK FQ +HGL +G V Sbjct: 79 AKPLMANGDESEQVRELQARLRQLKLVSTAP--TAFYGSKTTAAVKTFQSQHGLPATGSV 136 Query: 158 DSSTLEAMNV----PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKV 213 D +T + + P D +R N + + M R + ++ + +L + +GKV Sbjct: 137 DEATWQKVQGLTKKPTDDELRPPTTN--EVDAPDPRCMQGRVMCISKESRTLAWMIDGKV 194 Query: 214 GLRSTVIVGRVDRQT 228 V G + T Sbjct: 195 VSTMDVRFGSENTPT 209 >gi|312200757|ref|YP_004020818.1| peptidoglycan-binding domain 1 protein [Frankia sp. EuI1c] gi|311232093|gb|ADP84948.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EuI1c] Length = 1236 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 22/108 (20%) Query: 78 TEKAIAFY---QDILSRG-----GWPELPI--------RPLHLG----NSSVSVQRLRER 117 T A+ Y + I G W L RPL + + V+R++E Sbjct: 53 TASAVRRYQGVRGIAQDGIVGPATWEALAAEPNSPLAGRPLRVTIAGAVAGDDVRRVQEG 112 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L +G + + AV+ FQ+ HGL G+V TL A+ Sbjct: 113 LSSAGF--DPGPIDAVYGPMTARAVRRFQLVHGLGADGIVGPRTLAAL 158 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 6/82 (7%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P IR LH V+ L++ L G DP + L + SAV+ +Q G+ Sbjct: 12 PARSIRLLHGAVGGPDVELLQDALAAVGY-DPGR-LDGIYGPLTASAVRRYQGVRGIAQD 69 Query: 155 GMVDSSTLEAM----NVPVDLR 172 G+V +T EA+ N P+ R Sbjct: 70 GIVGPATWEALAAEPNSPLAGR 91 >gi|295101500|emb|CBK99045.1| Putative peptidoglycan-binding domain-containing protein [Faecalibacterium prausnitzii L2-6] Length = 717 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 4/99 (4%) Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLD---P 126 +S + +A+ + LS G W L G++ V++++ L + P Sbjct: 239 VSVKDLAELTSEGETFSGTLSDGSW-NFGSSVLKQGSTGSKVEQMQFWLSTLAQYESSIP 297 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S + + + +AV+ FQ R+GL G+V +T + Sbjct: 298 SVTVDGVYGSGTAAAVRAFQRRYGLTVDGIVGRTTWTEL 336 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 9/143 (6%) Query: 32 HASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT--EKAIAFYQDIL 89 + + + + V+ F + + + S + +T K Y DI Sbjct: 373 WLKIARTVYSSLNNVTVDGIFGSSTTAAVRRFQTYFGLTSDGVVGRTTWNKLYEVYNDIA 432 Query: 90 SRGGWPELPIRP----LHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAV 142 +R P L L G++ +V+ L+ L + PS + F A E+AV Sbjct: 433 NRLLSPSLRPGEYPGVLRNGSTGTAVRELQFYLYLMSAYQSSIPSVSIDGRFGAATEAAV 492 Query: 143 KLFQMRHGLDPSGMVDSSTLEAM 165 + +Q GL G+V T +++ Sbjct: 493 RAYQRFAGLTVDGIVGRKTWDSL 515 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P PL G++ +V L+ +L I+ D + F + VK FQ + L Sbjct: 164 PGSPLRQGSTGAAVFTLQRQLNRITKDYPFLGLLTVDGIFGRKMTETVKKFQRQFNLTAD 223 Query: 155 GMVDSSTLE 163 G+V ST Sbjct: 224 GVVGRSTWY 232 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 9/80 (11%) Query: 92 GGWPELPIRPLHLGNSSVSVQRL------RERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 G P+ P R + G+ V+ + R +L D + +F +AVK Sbjct: 626 GQGPDYPDRAMKEGSVGADVRLIEGWLNDRSQLYCEEDY---VADNASFGPEDTAAVKET 682 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q R GL+P+G+VD T A+ Sbjct: 683 QQRAGLEPNGVVDRPTWAAL 702 Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 17/128 (13%) Query: 98 PIRPLHLGNSSVSV---QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P PL +G S +V L +R+ D S LS + +A Q GL + Sbjct: 537 PGTPLTVGTDSSAVLYYTLLLQRIAYYYDSVASPALSSQYTQETANATASAQELLGLPAT 596 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 G+ D+ T A + L + L ++ G P A++ G VG Sbjct: 597 GVADAETWTA--------VEALSLQLAAFTPNPDRHPGQG------PDYPDRAMKEGSVG 642 Query: 215 LRSTVIVG 222 +I G Sbjct: 643 ADVRLIEG 650 >gi|42519030|ref|NP_964960.1| hypothetical protein LJ1104 [Lactobacillus johnsonii NCC 533] gi|41583317|gb|AAS08926.1| hypothetical protein LJ_1104 [Lactobacillus johnsonii NCC 533] Length = 483 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V V L++ L G + K ++ F+ ++AV FQ HGL G+V+ Sbjct: 394 LKKSMTGVDVATLQQYLTALGYMP--KHVTGVFNDETKNAVIEFQKAHGLTADGIVNGQV 451 Query: 162 LEAMNVPVDLRIR 174 + + V +++ Sbjct: 452 QAQLYLAVAQKLQ 464 >gi|323701875|ref|ZP_08113545.1| spore cortex-lytic enzyme [Desulfotomaculum nigrificans DSM 574] gi|323533179|gb|EGB23048.1| spore cortex-lytic enzyme [Desulfotomaculum nigrificans DSM 574] Length = 225 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L LG VQ+L+ L G + F +AVK FQ R+GL G+V Sbjct: 21 RTLKLGMEGYDVQQLQRNLGYLGY--NVGQVDGYFGWQTWAAVKEFQWRNGLSVDGIVGV 78 Query: 160 STLEAM 165 +T A+ Sbjct: 79 ATANAI 84 >gi|303231888|ref|ZP_07318597.1| 3D domain protein [Veillonella atypica ACS-049-V-Sch6] gi|302513417|gb|EFL55450.1| 3D domain protein [Veillonella atypica ACS-049-V-Sch6] Length = 201 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G VQ+++ L+ G L+ S F E AV+ FQ GL G V ++T+ A Sbjct: 29 GQRGHHVQKIQTMLVHQGYLNDSADG--IFGRNTELAVRKFQKAKGLAVDGRVGAATMSA 86 Query: 165 M 165 + Sbjct: 87 L 87 >gi|229097030|ref|ZP_04227998.1| hypothetical protein bcere0020_22760 [Bacillus cereus Rock3-29] gi|228686426|gb|EEL40336.1| hypothetical protein bcere0020_22760 [Bacillus cereus Rock3-29] Length = 1027 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + LG+ V++++ RL + + FD+ + VK FQ R L G+V Sbjct: 939 PGHVVKLGDKGAEVKKIQARLNEE---NIDVNIDGIFDSNTQMKVKEFQKRFELQVDGIV 995 Query: 158 DSSTLEAM 165 T + Sbjct: 996 GPETWHTL 1003 >gi|300716485|ref|YP_003741288.1| conserved uncharacterized protein [Erwinia billingiae Eb661] gi|299062321|emb|CAX59438.1| conserved uncharacterized protein [Erwinia billingiae Eb661] Length = 344 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 56/175 (32%), Gaps = 42/175 (24%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++VN+ L G+ + + +G++ TP + + +++ + NP W +I ++ Sbjct: 99 IVVNVAELRLYYYPKGENKVVVYPIGIGQLGANTPPMVTSVSQKIPNPTWTPTPNIRKR- 157 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + E G N M + Sbjct: 158 ----------------------------------YAAEGKTLPVTVPAGPDNPMGLYAMR 183 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 Y +H T F +R +SGC+R+ D+ L P +R I Sbjct: 184 LAYGQGHYLIHGTNAD--FGIGMR-VSSGCIRL-RPDDI-EALFNSVPKGTRVQI 233 >gi|227506196|ref|ZP_03936245.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium striatum ATCC 6940] gi|227197220|gb|EEI77268.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium striatum ATCC 6940] Length = 393 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 12/78 (15%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGL------------SVAFDAYVESAVKLFQM 147 R LH+G+ SV V R L G + +G FDA + +K FQ Sbjct: 3 RVLHIGDQSVRVAEARATLARLGLMKDYQGTLSDWKQQKYSESDKIFDAELSEVIKAFQQ 62 Query: 148 RHGLDPSGMVDSSTLEAM 165 G+ PSG++D TL + Sbjct: 63 SRGIVPSGVIDDLTLREL 80 Score = 39.8 bits (92), Expect = 0.94, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 G + + F +A+ +Q+ +GL G+ +T+ A+++ N+ Sbjct: 115 LGFY--QQRVDGHFGPDTHAALAEYQLNYGLQNDGVCGPTTINALSLLGRRITGGSAHNI 172 Query: 181 ---MRIKKLLEQKMGLRYVL 197 R++ + G R V+ Sbjct: 173 QERERVRNAGPKLAGKRVVI 192 >gi|301026908|ref|ZP_07190304.1| LysM domain protein [Escherichia coli MS 69-1] gi|331663155|ref|ZP_08364065.1| putative LysM domain protein [Escherichia coli TA143] gi|300395255|gb|EFJ78793.1| LysM domain protein [Escherichia coli MS 69-1] gi|331058954|gb|EGI30931.1| putative LysM domain protein [Escherichia coli TA143] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 69/206 (33%), Gaps = 43/206 (20%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + + N Y +H T P ++V +SGC+R+ ++ T T Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALFSSVRTGTP 229 Query: 364 SR---YHIEEVVKTRKTTPVKLATEV 386 + ++ V+ T V++ + Sbjct: 230 VKVINEPVKYSVEPNGTRYVEVHRPL 255 >gi|254382818|ref|ZP_04998174.1| hypothetical protein SSAG_02477 [Streptomyces sp. Mg1] gi|194341719|gb|EDX22685.1| hypothetical protein SSAG_02477 [Streptomyces sp. Mg1] Length = 368 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + L G+S V+RL +RL+ S L K + +D E+AV FQ RH + Sbjct: 296 KPAPAQSLQYGDSGAEVERL-QRLLASARLYRGK-FNGMYDDRTENAVSEFQWRHEIFDD 353 Query: 155 --GMVDSSTLEAM 165 G+ +T +A+ Sbjct: 354 PWGVYGPATRKAL 366 >gi|256005192|ref|ZP_05430160.1| spore cortex-lytic enzyme [Clostridium thermocellum DSM 2360] gi|255990846|gb|EEU00960.1| spore cortex-lytic enzyme [Clostridium thermocellum DSM 2360] gi|316941590|gb|ADU75624.1| spore cortex-lytic enzyme [Clostridium thermocellum DSM 1313] Length = 234 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G++ V+ ++ +L I + + Y+ AV+ FQ ++GL G+ TL Sbjct: 42 YGSTGQEVKNIQYKLAIWKYYNGKIDGIYGYKTYM--AVRKFQAKNGLKVDGIAGPETLA 99 Query: 164 AMNVPVDLRIR 174 A+ +P + Sbjct: 100 ALGLPTGQAAK 110 >gi|145297086|ref|YP_001139907.1| hypothetical protein cgR_2982 [Corynebacterium glutamicum R] gi|140847006|dbj|BAF56005.1| hypothetical protein [Corynebacterium glutamicum R] Length = 396 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 9/102 (8%) Query: 102 LHLGNS--SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 GN V ++ L G + + F AV +Q+ +G+ G+ Sbjct: 95 YQPGNQLVGDDVVEIQSHLQELGFY--ADRVDGHFGELTHKAVMNYQLNYGMQVDGICGP 152 Query: 160 STLEAMNVPVDLRIR----QLQVNLMRIKKLLEQKMGLRYVL 197 T+ A++ + LRI+ Q R++ + G R V+ Sbjct: 153 DTIRALSR-LGLRIKGGSAQAIRERERMRNAGPRLAGKRVVI 193 Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 13/80 (16%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK-------------GLSVAFDAYVESAVKLF 145 + L +G+ S V +R L G ++ FD + ++K F Sbjct: 2 SKVLRVGDRSPRVAEVRTTLARLGVIEGYSREMSAKTESQKFHEEETLFDEELSLSIKSF 61 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q G+ PSG++D TL A+ Sbjct: 62 QQARGVVPSGLIDDLTLRAI 81 >gi|119477591|ref|ZP_01617741.1| hypothetical protein GP2143_09020 [marine gamma proteobacterium HTCC2143] gi|119449094|gb|EAW30334.1| hypothetical protein GP2143_09020 [marine gamma proteobacterium HTCC2143] Length = 318 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 85/268 (31%), Gaps = 64/268 (23%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM---NVPVDLRIRQLQVNLMRIKKL 186 ++ + D + +Q+ G + + + + PV L I + N R Sbjct: 43 VTTSADDTLVDLAARYQL--GYNVIRSANPAVDPWLPGEGTPVVLPINVILPNAER---- 96 Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV-----GRVDRQTPILHSRINRIMFN 241 +++N+P L A + S V V GR D TPI +R+ N Sbjct: 97 -------EGIIINVPEMRLYAYASNGPNPSSRVTVHPISVGRGDWTTPITKTRVTGRAEN 149 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P+SI D ++ + Sbjct: 150 PDWYPPKSIR-----------------------------------DEHAARGDTLPTKVS 174 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 G N + + + ++H T +P F + T GC+R+ D++ + + Sbjct: 175 AGPDNPLGRFLLMLDIP-SYFIHGTNKP--FGIGM-QVTHGCIRM-YPDDIEQLVKQTRN 229 Query: 362 TWSRYHIEEVVKTR---KTTPVKLATEV 386 + + KT + V++ + Sbjct: 230 NTPVTIVNQTFKTGWFEQQLYVEVHQPL 257 >gi|260771263|ref|ZP_05880190.1| general secretion pathway protein A [Vibrio furnissii CIP 102972] gi|260613860|gb|EEX39052.1| general secretion pathway protein A [Vibrio furnissii CIP 102972] Length = 530 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W + L G ++ L +L L + +D V+ V++FQ + Sbjct: 446 WQPSFYQTLRSGMRGEAITLLDAKLSRL--LGEPERHVTEYDQEVKRKVEIFQRWQHMQV 503 Query: 154 SGMVDSSTLEAM 165 G+ TL + Sbjct: 504 DGIAGRQTLRQL 515 >gi|254426449|ref|ZP_05040165.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] gi|196187863|gb|EDX82829.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] Length = 498 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 28/185 (15%) Query: 40 INESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAF-------YQDILSR- 91 + + I D + S + ++ + + Y+D +S+ Sbjct: 184 LQKPILPIWGSESDARAPSSAGELQSYLARFPGSSVWRIPRVGERGQAWNLSYKDKVSQP 243 Query: 92 -GGWP---ELPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 GG P ELP R L G+ V+ L+ L + + F+ E AV F Sbjct: 244 VGGNPSEFELPSLSRILRRGSVGEDVKALQRALNALAF--EAGNTNGEFNTQTERAVTRF 301 Query: 146 QMRHGLDPSGMVDSSTLEAM-------NVPVDLRIRQLQVNLMR-----IKKLLEQKMGL 193 Q + G+ G V T A+ N P +++L R ++ Sbjct: 302 QQKAGITIDGEVGPETWSALGGELGLVNRPDQGILQELGNFAEREANRDLQWTSPTSEAE 361 Query: 194 RYVLV 198 +Y+ + Sbjct: 362 KYLEI 366 >gi|52079751|ref|YP_078542.1| N-acetylmuramoyl-L-alanine amidase [Bacillus licheniformis ATCC 14580] gi|52785121|ref|YP_090950.1| hypothetical protein BLi01353 [Bacillus licheniformis ATCC 14580] gi|319646441|ref|ZP_08000671.1| N-acetylmuramoyl-L-alanine amidase [Bacillus sp. BT1B_CT2] gi|52002962|gb|AAU22904.1| N-acetylmuramoyl-L-alanine amidase [Bacillus licheniformis ATCC 14580] gi|52347623|gb|AAU40257.1| hypothetical protein BLi01353 [Bacillus licheniformis ATCC 14580] gi|317392191|gb|EFV72988.1| N-acetylmuramoyl-L-alanine amidase [Bacillus sp. BT1B_CT2] Length = 354 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V++L+ RL+ +G P G ++ AV Q + G+ G+ ST Sbjct: 195 LKKGMSGSHVKKLQTRLVAAGFSLPKYGADGSYGDETVHAVVSLQKKAGIKADGIYGPST 254 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 4/66 (6%) Query: 104 LGNSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +V +++ L + G+ + +AVK FQ+ +GL G+ Sbjct: 284 PLMKGTAVTQIQTALAALYYYPDKGAKNNGIDGYYGMKTANAVKRFQLMYGLGADGIYGP 343 Query: 160 STLEAM 165 T M Sbjct: 344 KTKAKM 349 >gi|544114|sp|Q99125|CWLX_BACLI RecName: Full=Probable N-acetylmuramoyl-L-alanine amidase; AltName: Full=Autolysin; AltName: Full=Cell wall hydrolase; AltName: Full=ORFL3; Flags: Precursor gi|551735|gb|AAA22888.1| ORFL3 [Bacillus licheniformis] Length = 354 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V++L+ RL+ +G P G ++ AV Q + G+ G+ ST Sbjct: 195 LKKGMSGSHVKKLQTRLVAAGFSLPKYGADGSYGDETVHAVVSLQKKAGIKADGIYGPST 254 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 4/66 (6%) Query: 104 LGNSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +V +++ L + G+ + +AVK FQ+ +GL G+ Sbjct: 284 PLMKGTAVTQIQTALAALYYYPDKGAKNNGIDGYYGMKTANAVKRFQLMYGLGADGIYGP 343 Query: 160 STLEAM 165 T M Sbjct: 344 KTKAKM 349 >gi|218548736|ref|YP_002382527.1| hypothetical protein EFER_1374 [Escherichia fergusonii ATCC 35469] gi|218356277|emb|CAQ88895.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469] Length = 333 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|324113443|gb|EGC07418.1| ykud domain-containing protein [Escherichia fergusonii B253] gi|325497145|gb|EGC95004.1| hypothetical protein ECD227_1242 [Escherichia fergusonii ECD227] Length = 333 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|312143852|ref|YP_003995298.1| Peptidase M23 [Halanaerobium sp. 'sapolanicus'] gi|311904503|gb|ADQ14944.1| Peptidase M23 [Halanaerobium sp. 'sapolanicus'] Length = 410 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 3/72 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L L N V +++ L G S G F E AVK FQ +GL G+V T Sbjct: 29 LRLNNRGSEVVEVQKYLTELGYDISSDG---IFGRATEEAVKDFQSSNGLSVDGIVGRET 85 Query: 162 LEAMNVPVDLRI 173 + + ++ Sbjct: 86 YQKLKNSFVEKV 97 >gi|296087729|emb|CBI34985.3| unnamed protein product [Vitis vinifera] Length = 262 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 7/109 (6%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLD------PSKGLSVAFDAYVESAVKLFQMRHG 150 + ++ H G+ + +L++ L G L + FD VESA+K +Q + Sbjct: 15 VDLQGCHKGDKVEGIHKLKKYLGQFGYLSYSHSKYHTHANDDDFDDLVESAIKTYQTNYH 74 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQ-VNLMRIKKLLEQKMGLRYVLV 198 L+ +G +DS T+ M P + N MR + K L Y + Sbjct: 75 LNATGSLDSETVSQMVKPRCGAADIINGTNWMRSPRWPPSKTYLTYAFL 123 >gi|82777157|ref|YP_403506.1| hypothetical protein SDY_1909 [Shigella dysenteriae Sd197] gi|309788340|ref|ZP_07682944.1| lysM domain protein [Shigella dysenteriae 1617] gi|81241305|gb|ABB62015.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|308923722|gb|EFP69225.1| lysM domain protein [Shigella dysenteriae 1617] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLSHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|220931432|ref|YP_002508340.1| cell wall hydrolase SleB [Halothermothrix orenii H 168] gi|219992742|gb|ACL69345.1| cell wall hydrolase SleB [Halothermothrix orenii H 168] Length = 229 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 2/79 (2%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 + + G + EL R L G+ V L+ +L + F E AVKLFQ Sbjct: 24 KVEASGYYMELGTRILKKGDEGPDVAILQRKLKELNLYRG--KIDGIFGPGTEKAVKLFQ 81 Query: 147 MRHGLDPSGMVDSSTLEAM 165 ++ L G+V T + Sbjct: 82 EKNKLKVDGIVGPGTYSKL 100 >gi|154251395|ref|YP_001412219.1| peptidoglycan-binding domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154155345|gb|ABS62562.1| Peptidoglycan-binding domain 1 protein [Parvibaculum lavamentivorans DS-1] Length = 310 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 6/75 (8%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 ++ R L + V+ L L+ G + FD +E A+K FQ +GL Sbjct: 239 DVTTRNLRLTSPRMTGNDVRALEAALVKEGY---AINCDGVFDEGLEKALKSFQQDYGLI 295 Query: 153 PSGMVDSSTLEAMNV 167 G+ +T + + Sbjct: 296 ADGVAGPATRIMLGI 310 >gi|258544154|ref|ZP_05704388.1| ErfK/YbiS/YcfS/YnhG family protein [Cardiobacterium hominis ATCC 15826] gi|258520596|gb|EEV89455.1| ErfK/YbiS/YcfS/YnhG family protein [Cardiobacterium hominis ATCC 15826] Length = 300 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 49/165 (29%), Gaps = 43/165 (26%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+P L G+ V + +GR TP I NP Sbjct: 84 RFILP-DAPREGIVINLPEMRLYYYPPGQNVVHVFAIGIGREGWATPKGILSIADKRANP 142 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI + ++ Sbjct: 143 TWTPPASIRAE-----------------------------------HAANGDPLPPVVPA 167 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 G N + + + + Y +H T +P +R + GC+R+ Sbjct: 168 GPDNPLGLFAMRLSNPS--YLLHGTNKPE--GVGMR-VSHGCIRL 207 >gi|118443295|ref|YP_878172.1| glycosy hydrolase family protein [Clostridium novyi NT] gi|118133751|gb|ABK60795.1| glycosyl hydrolase, family 25 [Clostridium novyi NT] Length = 323 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++RLI G F E AVK FQ + L G+V T Sbjct: 258 RRGARGNITKIIQQRLIDKGYYVGIYKADGVFRNDTELAVKKFQKNNNLKVDGIVGIETW 317 Query: 163 EAM 165 +A+ Sbjct: 318 KAL 320 >gi|117623857|ref|YP_852770.1| hypothetical protein APECO1_755 [Escherichia coli APEC O1] gi|218558547|ref|YP_002391460.1| hypothetical protein ECS88_1728 [Escherichia coli S88] gi|237705624|ref|ZP_04536105.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|115512981|gb|ABJ01056.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|218365316|emb|CAR03037.1| conserved hypothetical protein [Escherichia coli S88] gi|226900381|gb|EEH86640.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|294492763|gb|ADE91519.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli IHE3034] gi|315286396|gb|EFU45832.1| LysM domain protein [Escherichia coli MS 110-3] gi|323952185|gb|EGB48058.1| ykud domain-containing protein [Escherichia coli H252] gi|323956579|gb|EGB52317.1| ykud domain-containing protein [Escherichia coli H263] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|302558357|ref|ZP_07310699.1| zinc D-Ala-D-Ala carboxypeptidase [Streptomyces griseoflavus Tu4000] gi|302475975|gb|EFL39068.1| zinc D-Ala-D-Ala carboxypeptidase [Streptomyces griseoflavus Tu4000] Length = 231 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+S V +L+ R+ ++ A +AVK FQ +GL G+ Sbjct: 27 RTLSQGSSGSDVTQLQIRVAGWVTSGERLAYDGSYGARTAAAVKKFQAAYGLAADGVAGP 86 Query: 160 ST---LEAM 165 +T + A+ Sbjct: 87 ATFSKIYAL 95 >gi|260843984|ref|YP_003221762.1| hypothetical protein ECO103_1821 [Escherichia coli O103:H2 str. 12009] gi|257759131|dbj|BAI30628.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|218705176|ref|YP_002412695.1| hypothetical protein ECUMN_1967 [Escherichia coli UMN026] gi|293405176|ref|ZP_06649168.1| L,D-transpeptidase YnhG [Escherichia coli FVEC1412] gi|298380819|ref|ZP_06990418.1| ynhG protein [Escherichia coli FVEC1302] gi|218432273|emb|CAR13163.1| conserved hypothetical protein [Escherichia coli UMN026] gi|291427384|gb|EFF00411.1| L,D-transpeptidase YnhG [Escherichia coli FVEC1412] gi|298278261|gb|EFI19775.1| ynhG protein [Escherichia coli FVEC1302] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|218699757|ref|YP_002407386.1| hypothetical protein ECIAI39_1380 [Escherichia coli IAI39] gi|218369743|emb|CAR17514.1| conserved hypothetical protein [Escherichia coli IAI39] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|206889744|ref|YP_002249108.1| LysM domain protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741682|gb|ACI20739.1| LysM domain protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 309 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 47/166 (28%) Query: 185 KLLEQKMGLRY-VLVNIPAASLEAVEN---GKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 +L ++ +++N+ L ++ + +G +TP+ +I+ + Sbjct: 86 WILPDRVNNFQGIIINLSEMRLYYFHKKSKEQLVTTFPIGIGDDGVETPMGKFKISHKIV 145 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP W +P SI Q+ P Sbjct: 146 NPPWYVPESIKQE---------------------------------------RPELPAVV 166 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 PG N + + + S + +H T P V R T GC+R+ Sbjct: 167 PPGPENPLGTHAMRL-SGLSYLIHGTNRPWA---VGRKVTHGCIRL 208 >gi|194434782|ref|ZP_03067032.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Shigella dysenteriae 1012] gi|194416951|gb|EDX33070.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Shigella dysenteriae 1012] gi|332093910|gb|EGI98963.1| lysM domain protein [Shigella dysenteriae 155-74] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|303229630|ref|ZP_07316418.1| 3D domain protein [Veillonella atypica ACS-134-V-Col7a] gi|302515755|gb|EFL57709.1| 3D domain protein [Veillonella atypica ACS-134-V-Col7a] Length = 201 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + + G VQ+++ L+ G L+ S F E AV+ FQ GL G V Sbjct: 23 AKSVDKGQRGHHVQKIQTMLVHQGYLNDSADG--IFGHNTELAVRKFQKAKGLAVDGRVG 80 Query: 159 SSTLEAM 165 ++T+ A+ Sbjct: 81 TATMSAL 87 >gi|300898541|ref|ZP_07116874.1| LysM domain protein [Escherichia coli MS 198-1] gi|300357805|gb|EFJ73675.1| LysM domain protein [Escherichia coli MS 198-1] Length = 331 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|297204486|ref|ZP_06921883.1| serine/threonine protein kinase [Streptomyces sviceus ATCC 29083] gi|297148706|gb|EFH29085.1| serine/threonine protein kinase [Streptomyces sviceus ATCC 29083] Length = 562 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 LG+S VQ+++ L G G+ F + ++AV+ FQ GLD G+V T Sbjct: 496 RLGDSGKRVQQVQCMLTERGYSVGGTGVDGEFGSGTQNAVRAFQNERGLDADGVVAHDTW 555 Query: 163 EAM 165 A+ Sbjct: 556 VAL 558 >gi|293396322|ref|ZP_06640600.1| LysM domain/ErfK/YbiS/YcfS/YnhG domain protein [Serratia odorifera DSM 4582] gi|291421111|gb|EFE94362.1| LysM domain/ErfK/YbiS/YcfS/YnhG domain protein [Serratia odorifera DSM 4582] Length = 340 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 72/241 (29%), Gaps = 66/241 (27%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L ++VN+ L G+ + + +G+ TP+ + +++ + NP W Sbjct: 90 MLLPDTPREGIVVNLAELRLYYYPKGENKVIVYPIGIGQTGMHTPLKVTSVSQKIPNPTW 149 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +I ++ + + G Sbjct: 150 TPTANIRKR-----------------------------------YAAQGVTLPGVVPAGP 174 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + + Y +H T F +R +SGC+R+ D+ L P Sbjct: 175 ENPMGLFAMRLSMGHGEYLIHGTNAN--FGIGMR-VSSGCIRL-RPNDI-EALFNMVPKG 229 Query: 364 SRYHI-----EEVVKTRKTTPVKLATE-----------VPVHFVYISAWSPKDSIIQFRD 407 +R I + V+ V++ +P+H +F + Sbjct: 230 TRVQIINEPVKVSVEPDGKRYVEVHQPLSKVESDDPQTMPIHL--------SKGQQKFVN 281 Query: 408 D 408 D Sbjct: 282 D 282 >gi|309701903|emb|CBJ01215.1| putative peptidoglycan-binding protein [Escherichia coli ETEC H10407] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|300924713|ref|ZP_07140659.1| LysM domain protein [Escherichia coli MS 182-1] gi|301326558|ref|ZP_07219899.1| LysM domain protein [Escherichia coli MS 78-1] gi|300419091|gb|EFK02402.1| LysM domain protein [Escherichia coli MS 182-1] gi|300846778|gb|EFK74538.1| LysM domain protein [Escherichia coli MS 78-1] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|281178748|dbj|BAI55078.1| conserved hypothetical protein [Escherichia coli SE15] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|237731316|ref|ZP_04561797.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226906855|gb|EEH92773.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 56/172 (32%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPREGIIVNLAELRLYYFPPGENIVQVFPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I ++ + + I + G Sbjct: 148 TPTPGIRKRSL------------ERGITL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRFALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|293409991|ref|ZP_06653567.1| conserved hypothetical protein [Escherichia coli B354] gi|331673236|ref|ZP_08374004.1| putative LysM domain protein [Escherichia coli TA280] gi|222033434|emb|CAP76175.1| Uncharacterized protein ynhG [Escherichia coli LF82] gi|284921599|emb|CBG34671.1| putative peptidoglycan-binding protein [Escherichia coli 042] gi|291470459|gb|EFF12943.1| conserved hypothetical protein [Escherichia coli B354] gi|312946278|gb|ADR27105.1| hypothetical protein NRG857_08405 [Escherichia coli O83:H1 str. NRG 857C] gi|331069434|gb|EGI40821.1| putative LysM domain protein [Escherichia coli TA280] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|193068955|ref|ZP_03049914.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E110019] gi|192957750|gb|EDV88194.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E110019] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|209769214|gb|ACI82919.1| hypothetical protein ECs2385 [Escherichia coli] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|255283883|ref|ZP_05348438.1| spore cortex-lytic enzyme SleC [Bryantella formatexigens DSM 14469] gi|255265604|gb|EET58809.1| spore cortex-lytic enzyme SleC [Bryantella formatexigens DSM 14469] Length = 413 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 11/94 (11%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S +V++++E+L + L P + F E+AVK+FQ GL Sbjct: 328 PGYALRIGSSGDAVRQIQEQLNAISNNYPLIPKIAVDGIFGPATENAVKVFQSVFGLTQD 387 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 G+V T RI+ + V + RI +L Sbjct: 388 GIVGRRTWY--------RIQDIYVAVTRIAELYP 413 >gi|24113067|ref|NP_707577.1| hypothetical protein SF1707 [Shigella flexneri 2a str. 301] gi|30063192|ref|NP_837363.1| hypothetical protein S1840 [Shigella flexneri 2a str. 2457T] gi|110805655|ref|YP_689175.1| hypothetical protein SFV_1701 [Shigella flexneri 5 str. 8401] gi|157159013|ref|YP_001462972.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E24377A] gi|191167846|ref|ZP_03029651.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli B7A] gi|209918992|ref|YP_002293076.1| hypothetical protein ECSE_1801 [Escherichia coli SE11] gi|218554244|ref|YP_002387157.1| hypothetical protein ECIAI1_1730 [Escherichia coli IAI1] gi|218695239|ref|YP_002402906.1| hypothetical protein EC55989_1845 [Escherichia coli 55989] gi|256018128|ref|ZP_05431993.1| hypothetical protein ShiD9_04383 [Shigella sp. D9] gi|260855502|ref|YP_003229393.1| hypothetical protein ECO26_2406 [Escherichia coli O26:H11 str. 11368] gi|260868169|ref|YP_003234571.1| hypothetical protein ECO111_2147 [Escherichia coli O111:H- str. 11128] gi|293446052|ref|ZP_06662474.1| ynhG protein [Escherichia coli B088] gi|300820069|ref|ZP_07100245.1| LysM domain protein [Escherichia coli MS 107-1] gi|300821449|ref|ZP_07101596.1| LysM domain protein [Escherichia coli MS 119-7] gi|300904529|ref|ZP_07122368.1| LysM domain protein [Escherichia coli MS 84-1] gi|301303193|ref|ZP_07209319.1| LysM domain protein [Escherichia coli MS 124-1] gi|307310751|ref|ZP_07590397.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli W] gi|309793444|ref|ZP_07687871.1| LysM domain protein [Escherichia coli MS 145-7] gi|331668362|ref|ZP_08369210.1| putative LysM domain protein [Escherichia coli TA271] gi|331677549|ref|ZP_08378224.1| putative LysM domain protein [Escherichia coli H591] gi|332279173|ref|ZP_08391586.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Shigella sp. D9] gi|24052040|gb|AAN43284.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30041444|gb|AAP17172.1| hypothetical protein S1840 [Shigella flexneri 2a str. 2457T] gi|110615203|gb|ABF03870.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|157081043|gb|ABV20751.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E24377A] gi|190902105|gb|EDV61849.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli B7A] gi|209912251|dbj|BAG77325.1| conserved hypothetical protein [Escherichia coli SE11] gi|218351971|emb|CAU97703.1| conserved hypothetical protein [Escherichia coli 55989] gi|218361012|emb|CAQ98587.1| conserved hypothetical protein [Escherichia coli IAI1] gi|257754151|dbj|BAI25653.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368] gi|257764525|dbj|BAI36020.1| conserved predicted protein [Escherichia coli O111:H- str. 11128] gi|281601115|gb|ADA74099.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Shigella flexneri 2002017] gi|291322882|gb|EFE62310.1| ynhG protein [Escherichia coli B088] gi|300403523|gb|EFJ87061.1| LysM domain protein [Escherichia coli MS 84-1] gi|300525952|gb|EFK47021.1| LysM domain protein [Escherichia coli MS 119-7] gi|300527374|gb|EFK48436.1| LysM domain protein [Escherichia coli MS 107-1] gi|300841602|gb|EFK69362.1| LysM domain protein [Escherichia coli MS 124-1] gi|306908929|gb|EFN39425.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli W] gi|308123031|gb|EFO60293.1| LysM domain protein [Escherichia coli MS 145-7] gi|313648960|gb|EFS13397.1| lysM domain protein [Shigella flexneri 2a str. 2457T] gi|315060983|gb|ADT75310.1| murein L,D-transpeptidase [Escherichia coli W] gi|315257519|gb|EFU37487.1| LysM domain protein [Escherichia coli MS 85-1] gi|320181296|gb|EFW56215.1| L,D-transpeptidase YnhG [Shigella boydii ATCC 9905] gi|323152815|gb|EFZ39085.1| lysM domain protein [Escherichia coli EPECa14] gi|323163472|gb|EFZ49298.1| lysM domain protein [Escherichia coli E128010] gi|323180994|gb|EFZ66532.1| lysM domain protein [Escherichia coli 1180] gi|323186049|gb|EFZ71405.1| lysM domain protein [Escherichia coli 1357] gi|323378445|gb|ADX50713.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli KO11] gi|323948027|gb|EGB44019.1| ykud domain-containing protein [Escherichia coli H120] gi|324016508|gb|EGB85727.1| LysM domain protein [Escherichia coli MS 117-3] gi|324119162|gb|EGC13050.1| ykud domain-containing protein [Escherichia coli E1167] gi|331063556|gb|EGI35467.1| putative LysM domain protein [Escherichia coli TA271] gi|331074009|gb|EGI45329.1| putative LysM domain protein [Escherichia coli H591] gi|332101525|gb|EGJ04871.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Shigella sp. D9] gi|332343397|gb|AEE56731.1| conserved hypothetical protein [Escherichia coli UMNK88] gi|332756998|gb|EGJ87341.1| lysM domain protein [Shigella flexneri 4343-70] gi|332757787|gb|EGJ88116.1| lysM domain protein [Shigella flexneri 2747-71] gi|332758519|gb|EGJ88840.1| lysM domain protein [Shigella flexneri K-671] gi|332766884|gb|EGJ97084.1| putative L,D-transpeptidase YcfS [Shigella flexneri 2930-71] gi|333003811|gb|EGK23347.1| lysM domain protein [Shigella flexneri VA-6] gi|333003966|gb|EGK23501.1| lysM domain protein [Shigella flexneri K-218] gi|333005920|gb|EGK25436.1| lysM domain protein [Shigella flexneri K-272] gi|333018052|gb|EGK37357.1| lysM domain protein [Shigella flexneri K-304] gi|333018835|gb|EGK38128.1| lysM domain protein [Shigella flexneri K-227] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|183598859|ref|ZP_02960352.1| hypothetical protein PROSTU_02291 [Providencia stuartii ATCC 25827] gi|188021066|gb|EDU59106.1| hypothetical protein PROSTU_02291 [Providencia stuartii ATCC 25827] Length = 357 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 42/175 (24%) Query: 196 VLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L E K + + +G++ R TP + + +++ + +P W +I Sbjct: 98 IIINLAELRLYYYPEGSKEVVVYPIGIGQLGRDTPEMVTSVSQSIKDPTWTPTANI---- 153 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 N + E G N M + Sbjct: 154 -------------RKNY------------------AKEGITLPAVVPAGPDNPMGLYALR 182 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 Y +H T F +R +SGC+R+ D+ L K P +R + Sbjct: 183 LAYGRGEYLIHGTNAD--FGIGMR-VSSGCIRL-RPDDI-EALFKTVPKGTRVQV 232 >gi|170682137|ref|YP_001743576.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli SMS-3-5] gi|300938999|ref|ZP_07153697.1| LysM domain protein [Escherichia coli MS 21-1] gi|170519855|gb|ACB18033.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli SMS-3-5] gi|300456102|gb|EFK19595.1| LysM domain protein [Escherichia coli MS 21-1] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|74311997|ref|YP_310416.1| hypothetical protein SSON_1478 [Shigella sonnei Ss046] gi|73855474|gb|AAZ88181.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|323169246|gb|EFZ54922.1| lysM domain protein [Shigella sonnei 53G] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|15831639|ref|NP_310412.1| hypothetical protein ECs2385 [Escherichia coli O157:H7 str. Sakai] gi|168751911|ref|ZP_02776933.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4113] gi|168762261|ref|ZP_02787268.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4501] gi|168770437|ref|ZP_02795444.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4486] gi|168775025|ref|ZP_02800032.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4196] gi|168782090|ref|ZP_02807097.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4076] gi|168789812|ref|ZP_02814819.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC869] gi|188496112|ref|ZP_03003382.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 53638] gi|195937362|ref|ZP_03082744.1| hypothetical protein EscherichcoliO157_13082 [Escherichia coli O157:H7 str. EC4024] gi|208810266|ref|ZP_03252142.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4206] gi|208816672|ref|ZP_03257792.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4045] gi|208820505|ref|ZP_03260825.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4042] gi|209399001|ref|YP_002270747.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4115] gi|217328734|ref|ZP_03444815.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. TW14588] gi|254793295|ref|YP_003078132.1| hypothetical protein ECSP_2245 [Escherichia coli O157:H7 str. TW14359] gi|261227877|ref|ZP_05942158.1| hypothetical protein EscherichiacoliO157_25212 [Escherichia coli O157:H7 str. FRIK2000] gi|261258389|ref|ZP_05950922.1| hypothetical protein EscherichiacoliO157EcO_21562 [Escherichia coli O157:H7 str. FRIK966] gi|293414994|ref|ZP_06657637.1| ynhG protein [Escherichia coli B185] gi|300918048|ref|ZP_07134669.1| LysM domain protein [Escherichia coli MS 115-1] gi|13361852|dbj|BAB35808.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187769387|gb|EDU33231.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4196] gi|188014124|gb|EDU52246.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4113] gi|188491311|gb|EDU66414.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 53638] gi|189000273|gb|EDU69259.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4076] gi|189360604|gb|EDU79023.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4486] gi|189367460|gb|EDU85876.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4501] gi|189370588|gb|EDU89004.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC869] gi|208724782|gb|EDZ74489.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4206] gi|208731015|gb|EDZ79704.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4045] gi|208740628|gb|EDZ88310.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4042] gi|209160401|gb|ACI37834.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4115] gi|209769208|gb|ACI82916.1| hypothetical protein ECs2385 [Escherichia coli] gi|209769210|gb|ACI82917.1| hypothetical protein ECs2385 [Escherichia coli] gi|209769212|gb|ACI82918.1| hypothetical protein ECs2385 [Escherichia coli] gi|209769216|gb|ACI82920.1| hypothetical protein ECs2385 [Escherichia coli] gi|217318081|gb|EEC26508.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. TW14588] gi|254592695|gb|ACT72056.1| conserved protein [Escherichia coli O157:H7 str. TW14359] gi|291432642|gb|EFF05621.1| ynhG protein [Escherichia coli B185] gi|300414739|gb|EFJ98049.1| LysM domain protein [Escherichia coli MS 115-1] gi|320188366|gb|EFW63028.1| L,D-transpeptidase YnhG [Escherichia coli O157:H7 str. EC1212] gi|320641893|gb|EFX11261.1| hypothetical protein ECO5101_07362 [Escherichia coli O157:H7 str. G5101] gi|320647349|gb|EFX16157.1| hypothetical protein ECO9389_09098 [Escherichia coli O157:H- str. 493-89] gi|320652643|gb|EFX20912.1| hypothetical protein ECO2687_03590 [Escherichia coli O157:H- str. H 2687] gi|320653028|gb|EFX21224.1| hypothetical protein ECO7815_12520 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658712|gb|EFX26389.1| hypothetical protein ECO5905_08454 [Escherichia coli O55:H7 str. USDA 5905] gi|320668702|gb|EFX35507.1| hypothetical protein ECOSU61_21203 [Escherichia coli O157:H7 str. LSU-61] gi|326342045|gb|EGD65826.1| L,D-transpeptidase YnhG [Escherichia coli O157:H7 str. 1044] gi|326343597|gb|EGD67359.1| L,D-transpeptidase YnhG [Escherichia coli O157:H7 str. 1125] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|16129634|ref|NP_416193.1| murein L,D-transpeptidase [Escherichia coli str. K-12 substr. MG1655] gi|89108518|ref|AP_002298.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|157161143|ref|YP_001458461.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli HS] gi|170019972|ref|YP_001724926.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli ATCC 8739] gi|170081338|ref|YP_001730658.1| hypothetical protein ECDH10B_1812 [Escherichia coli str. K-12 substr. DH10B] gi|194438521|ref|ZP_03070610.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 101-1] gi|238900893|ref|YP_002926689.1| hypothetical protein BWG_1492 [Escherichia coli BW2952] gi|253773365|ref|YP_003036196.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161739|ref|YP_003044847.1| hypothetical protein ECB_01647 [Escherichia coli B str. REL606] gi|256022659|ref|ZP_05436524.1| hypothetical protein E4_04749 [Escherichia sp. 4_1_40B] gi|300930852|ref|ZP_07146222.1| LysM domain protein [Escherichia coli MS 187-1] gi|300951270|ref|ZP_07165119.1| LysM domain protein [Escherichia coli MS 116-1] gi|300958559|ref|ZP_07170689.1| LysM domain protein [Escherichia coli MS 175-1] gi|301027877|ref|ZP_07191178.1| LysM domain protein [Escherichia coli MS 196-1] gi|312969703|ref|ZP_07783886.1| lysM domain protein [Escherichia coli 1827-70] gi|3025249|sp|P76193|YNHG_ECOLI RecName: Full=Probable L,D-transpeptidase YnhG; Flags: Precursor gi|1787968|gb|AAC74748.1| murein L,D-transpeptidase [Escherichia coli str. K-12 substr. MG1655] gi|85675073|dbj|BAA15458.2| conserved hypothetical protein [Escherichia coli str. K12 substr. W3110] gi|157066823|gb|ABV06078.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli HS] gi|169754900|gb|ACA77599.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli ATCC 8739] gi|169889173|gb|ACB02880.1| conserved protein [Escherichia coli str. K-12 substr. DH10B] gi|194422531|gb|EDX38529.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 101-1] gi|238860319|gb|ACR62317.1| conserved protein [Escherichia coli BW2952] gi|242377405|emb|CAQ32154.1| L,D-transpeptidase YnhG [Escherichia coli BL21(DE3)] gi|253324409|gb|ACT29011.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973640|gb|ACT39311.1| hypothetical protein ECB_01647 [Escherichia coli B str. REL606] gi|253977835|gb|ACT43505.1| hypothetical protein ECD_01647 [Escherichia coli BL21(DE3)] gi|260449199|gb|ACX39621.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli DH1] gi|299879033|gb|EFI87244.1| LysM domain protein [Escherichia coli MS 196-1] gi|300314768|gb|EFJ64552.1| LysM domain protein [Escherichia coli MS 175-1] gi|300449451|gb|EFK13071.1| LysM domain protein [Escherichia coli MS 116-1] gi|300461327|gb|EFK24820.1| LysM domain protein [Escherichia coli MS 187-1] gi|310337988|gb|EFQ03077.1| lysM domain protein [Escherichia coli 1827-70] gi|315136319|dbj|BAJ43478.1| hypothetical protein ECDH1ME8569_1622 [Escherichia coli DH1] gi|315618873|gb|EFU99456.1| lysM domain protein [Escherichia coli 3431] gi|323937281|gb|EGB33560.1| ykud domain-containing protein [Escherichia coli E1520] gi|323940655|gb|EGB36846.1| ykud domain-containing protein [Escherichia coli E482] gi|323962169|gb|EGB57764.1| ykud domain-containing protein [Escherichia coli H489] gi|323973943|gb|EGB69115.1| ykud domain-containing protein [Escherichia coli TA007] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|215486853|ref|YP_002329284.1| hypothetical protein E2348C_1763 [Escherichia coli O127:H6 str. E2348/69] gi|215264925|emb|CAS09311.1| predicted protein [Escherichia coli O127:H6 str. E2348/69] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|26247928|ref|NP_753968.1| hypothetical protein c2073 [Escherichia coli CFT073] gi|227885903|ref|ZP_04003708.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 83972] gi|300994863|ref|ZP_07180976.1| LysM domain protein [Escherichia coli MS 45-1] gi|301050991|ref|ZP_07197837.1| LysM domain protein [Escherichia coli MS 185-1] gi|312966831|ref|ZP_07781049.1| lysM domain protein [Escherichia coli 2362-75] gi|331647169|ref|ZP_08348263.1| putative LysM domain protein [Escherichia coli M605] gi|26108331|gb|AAN80533.1|AE016761_108 Hypothetical protein ynhG precursor [Escherichia coli CFT073] gi|227837082|gb|EEJ47548.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 83972] gi|300297368|gb|EFJ53753.1| LysM domain protein [Escherichia coli MS 185-1] gi|300406203|gb|EFJ89741.1| LysM domain protein [Escherichia coli MS 45-1] gi|307553699|gb|ADN46474.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli ABU 83972] gi|312288295|gb|EFR16197.1| lysM domain protein [Escherichia coli 2362-75] gi|315290525|gb|EFU49899.1| LysM domain protein [Escherichia coli MS 153-1] gi|320195426|gb|EFW70051.1| L,D-transpeptidase YnhG [Escherichia coli WV_060327] gi|323187102|gb|EFZ72418.1| lysM domain protein [Escherichia coli RN587/1] gi|330911485|gb|EGH39995.1| l,D-transpeptidase YnhG [Escherichia coli AA86] gi|331043952|gb|EGI16088.1| putative LysM domain protein [Escherichia coli M605] Length = 334 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|327198296|ref|YP_004306871.1| gp27 [Burkholderia phage KS14] gi|310657259|gb|ADP02372.1| gp27 [Burkholderia phage KS14] Length = 268 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V L++RL +G + FD ESAV Q GL G+ T Sbjct: 5 LRKGDIGDEVLLLQKRLTRAGF---PVAETHVFDHDTESAVMTLQKARGLVIDGIAGPKT 61 Query: 162 LEAM 165 + A+ Sbjct: 62 MIAL 65 >gi|268592601|ref|ZP_06126822.1| ErfK/YbiS/YcfS/YnhG family protein [Providencia rettgeri DSM 1131] gi|291312015|gb|EFE52468.1| ErfK/YbiS/YcfS/YnhG family protein [Providencia rettgeri DSM 1131] Length = 354 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 65/197 (32%), Gaps = 43/197 (21%) Query: 186 LLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L +++N+ L N + + + +G++ R TP + + +++ + +P W Sbjct: 88 MLLPSTPRTGIVINLAELRLYYYPANSEEVIVYPIGIGQLGRDTPEMVTSVSQSIKDPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +I N + E G Sbjct: 148 TPTANI-----------------RKNY------------------AKEGITLPAVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M + Y +H T F +R +SGC+R+ D+ L K P Sbjct: 173 ENPMGLYALRLAYGRGEYLIHGTNAD--FGIGMR-VSSGCIRL-RPDDI-EALFKTVPKG 227 Query: 364 SRYH-IEEVVKTRKTTP 379 +R I++ VK K T Sbjct: 228 TRVQVIDQPVKYSKETD 244 >gi|206599573|ref|YP_002242012.1| gp29 [Mycobacterium phage Brujita] gi|206282722|gb|ACI06243.1| gp29 [Mycobacterium phage Brujita] gi|302858466|gb|ADL71213.1| gp29 [Mycobacterium phage island3] Length = 314 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSV--AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 + V+ L+ RL D L F E V+ FQ R GL G+ +TL A Sbjct: 189 TGERVKALQARLNR--DYPAYSDLDEDGEFGPLTEQVVREFQRRSGLLDDGIAGPATLAA 246 Query: 165 MNVPVD 170 + + Sbjct: 247 LGLSFQ 252 >gi|62391939|ref|YP_227341.1| N-acetymuramyl-L-alanine amidase [Corynebacterium glutamicum ATCC 13032] gi|41223086|emb|CAF19031.1| N-ACETYMURAMYL-L-ALANINE AMIDASE [Corynebacterium glutamicum ATCC 13032] Length = 403 Score = 56.0 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 9/102 (8%) Query: 102 LHLGNS--SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 GN V ++ L G + + F AV +Q+ +G+ G+ Sbjct: 102 YQPGNQLVGDDVVEIQSHLQELGFY--ADRVDGHFGELTHKAVMNYQLNYGMQVDGICGP 159 Query: 160 STLEAMNVPVDLRIR----QLQVNLMRIKKLLEQKMGLRYVL 197 T+ A++ + LRI+ Q R++ + G R V+ Sbjct: 160 DTIRALSR-LGLRIKGGSAQAIRERERMRNAGPRLAGKRVVI 200 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 13/80 (16%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK-------------GLSVAFDAYVESAVKLF 145 + L +G+ S V +R L G ++ FD + ++K F Sbjct: 9 SKVLRVGDRSPRVAEVRTTLARLGVIEGYSREMSAKTESQKFHEEETLFDEELSLSIKSF 68 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q G+ PSG++D TL A+ Sbjct: 69 QQARGVVPSGLIDDPTLRAI 88 >gi|301647861|ref|ZP_07247643.1| LysM domain protein [Escherichia coli MS 146-1] gi|301074002|gb|EFK88808.1| LysM domain protein [Escherichia coli MS 146-1] Length = 334 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|291282808|ref|YP_003499626.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O55:H7 str. CB9615] gi|290762681|gb|ADD56642.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O55:H7 str. CB9615] Length = 334 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|331683185|ref|ZP_08383786.1| putative LysM domain protein [Escherichia coli H299] gi|331079400|gb|EGI50597.1| putative LysM domain protein [Escherichia coli H299] Length = 334 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|222053246|ref|YP_002535608.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. FRC-32] gi|221562535|gb|ACM18507.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. FRC-32] Length = 439 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 45/168 (26%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK---VGLRSTVIVGRVDRQTPILHSRINRIM 239 ++ +L + ++VN+ L + V V +G +R TP+ + R + Sbjct: 115 LRFILP-DAPRKGIVVNLATMRLFHYKGDNNALVVTTYPVGIGTKERPTPMGQMFVQRKV 173 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 P W +P SI + + DP R Sbjct: 174 SRPTWYVPASIAED---HRKKGDP--------------------------------LPAR 198 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 PG +N + + + Y +H T +P ++GC+R+ Sbjct: 199 VPPGPLNPLGECALYLSKPS--YLIHGTNKPASIGLNA---SNGCLRL 241 >gi|15613858|ref|NP_242161.1| hypothetical protein BH1295 [Bacillus halodurans C-125] gi|10173911|dbj|BAB05014.1| BH1295 [Bacillus halodurans C-125] Length = 881 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L G+S SV+ ++ +L G + F + + AV+ FQ GL G+V Sbjct: 401 PGVLLSTGSSGDSVRAVQRKLQERGYYHGV--IDGIFGSMTDRAVRSFQHAMGLQVDGIV 458 Query: 158 DSSTLEAM 165 T A+ Sbjct: 459 GRMTWNAL 466 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + G+S V+R++ERLI G F + AV+ FQ GLD G+V Sbjct: 319 PGYLISSGSSGNDVRRIQERLINMGY--SVGAADGIFGPITKRAVESFQRDTGLDVDGIV 376 Query: 158 DSSTLEAM 165 T + Sbjct: 377 GRLTWNQL 384 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P + G+ V ++++RL G + F AV FQ + L P G Sbjct: 79 PFPGTLIGTGSRGEQVVKVQQRLNSLGY--NAGVADGIFGQGTRQAVINFQSDYFLSPDG 136 Query: 156 MVDSSTLEAM 165 +V T A+ Sbjct: 137 IVGELTWNAL 146 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L +G+ V+ ++ +L G F + E VK FQ L G+V Sbjct: 159 PGFLLRVGSRGEEVKIVQNQLNRLGF--NVGTADGIFGSGTEQGVKDFQTSRNLQVDGIV 216 Query: 158 DSSTLEAM 165 T + Sbjct: 217 GQETWNRL 224 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 2/69 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 P +G+ V ++ +L G F ESAV FQ ++ L+ G+ Sbjct: 3 FPGVLYSVGSRGDEVAAIQRQLNQLGF--NVGTADGIFGQRTESAVIAFQKQNNLNSDGI 60 Query: 157 VDSSTLEAM 165 V T + + Sbjct: 61 VGRLTWDKL 69 Score = 44.4 bits (104), Expect = 0.034, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L LG + V+ ++ +L + + + F + AV FQ +GL G+V Sbjct: 241 PGVLLSLGATGDLVRSVQRQLNSNHY--NAGVVDGIFGGQTQQAVMNFQRTNGLSVDGIV 298 Query: 158 DSSTLEAM 165 T + + Sbjct: 299 GRLTWDVL 306 >gi|153824309|ref|ZP_01976976.1| general secretion pathway protein A [Vibrio cholerae B33] gi|126518168|gb|EAZ75393.1| general secretion pathway protein A [Vibrio cholerae B33] Length = 259 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 2/72 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W R L G V L +L L + FD + V+LFQ + Sbjct: 175 WQASFSRTLKQGMQGADVALLESKLAQV--LGEPERPREQFDKDLSRKVELFQRWQNMHV 232 Query: 154 SGMVDSSTLEAM 165 G+ TL + Sbjct: 233 DGIAGRQTLRRL 244 >gi|318060180|ref|ZP_07978903.1| hypothetical protein SSA3_19714 [Streptomyces sp. SA3_actG] Length = 235 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 46/133 (34%), Gaps = 14/133 (10%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + V+ L+ RL G + F A+ FQ GL SG++D++T Sbjct: 32 RKGQRTSDVRALQARLWSLGFFRQQP--TGFFGDVTAQALAAFQRDRGLGASGVLDAATW 89 Query: 163 EAM--NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL-----VNIPAASLEAVENGKVGL 215 + P + L L + R + V+ + +L + +G+V Sbjct: 90 ARLRAAGPAPTKA-----ALYPETTLPPTRPDPRCLTGRALCVSKKSRTLAWMVDGRVVS 144 Query: 216 RSTVIVGRVDRQT 228 V G T Sbjct: 145 VMDVRFGSAYTPT 157 >gi|308172492|ref|YP_003919197.1| N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens DSM 7] gi|307605356|emb|CBI41727.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus amyloliquefaciens DSM 7] Length = 323 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 4/63 (6%) Query: 107 SSVSVQRLRERLIISGDLDPSK----GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +V++++ L G+ A+ A +AVK FQ +GL G+ T Sbjct: 256 RGEAVKQIQTALAALHYYPDKSAKNFGIDSAYGAKTANAVKRFQSMYGLPADGIYGPKTK 315 Query: 163 EAM 165 + Sbjct: 316 AKL 318 >gi|239927067|ref|ZP_04684020.1| putative peptidodoglycan-binding membrane protein [Streptomyces ghanaensis ATCC 14672] gi|291435412|ref|ZP_06574802.1| predicted protein [Streptomyces ghanaensis ATCC 14672] gi|291338307|gb|EFE65263.1| predicted protein [Streptomyces ghanaensis ATCC 14672] Length = 227 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVDS 159 L G+ V L+ RL+ D+ +DA + +AV FQ+ +G+ G+ Sbjct: 144 LREGDFGPEVTELQRRLLRIPDVYREGTTDGRYDAALSAAVARFQLWYGVRGDETGVYGD 203 Query: 160 STLEAM 165 T A+ Sbjct: 204 DTRLAL 209 >gi|253682264|ref|ZP_04863061.1| autolytic lysozyme (1,4-beta-N-acetylmuramidase)(Autolysin) [Clostridium botulinum D str. 1873] gi|253561976|gb|EES91428.1| autolytic lysozyme (1,4-beta-N-acetylmuramidase)(Autolysin) [Clostridium botulinum D str. 1873] Length = 322 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 27/63 (42%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++RL+ G GL F E AVK FQ GL G+V T Sbjct: 257 RRGAKGNITKIIQQRLLNKGYSLGVYGLDGVFGTKTEMAVKRFQKDCGLKIDGIVGRETW 316 Query: 163 EAM 165 +A+ Sbjct: 317 KAL 319 >gi|154246694|ref|YP_001417652.1| peptidoglycan binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154160779|gb|ABS67995.1| Peptidoglycan-binding domain 1 protein [Xanthobacter autotrophicus Py2] Length = 170 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V+ L+ +L ++ D F E A+K +Q +HGL G+ T Sbjct: 4 LKRGLSGEPVKILQAKLGVAAD--------GKFGPGTEEALKAYQTQHGLAADGIAGPDT 55 Query: 162 LEAMNVP 168 A+ +P Sbjct: 56 FAALGLP 62 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 23/103 (22%) Query: 78 TEKAIAFYQ---DILSRG----------GWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 TE+A+ YQ + + G G PEL + L G+ +V++L+ L I+ D Sbjct: 32 TEEALKAYQTQHGLAADGIAGPDTFAALGLPELIL--LTQGSKGETVKKLQTALGITAD- 88 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 A+ AV+ FQ ++GL+ GM TL ++V Sbjct: 89 -------GAYGPGTAKAVEAFQAKNGLEADGMAGPVTLSKIDV 124 >gi|238853074|ref|ZP_04643466.1| periplasmic protease [Lactobacillus gasseri 202-4] gi|238834322|gb|EEQ26567.1| periplasmic protease [Lactobacillus gasseri 202-4] Length = 482 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V V L++ L G L K ++ FD ++AV FQ H L G+V+ Sbjct: 393 LKKSMTGVDVATLQQYLTALGYLP--KHVTGVFDDETKNAVIKFQKEHDLTTDGIVNGQV 450 Query: 162 LEAMNVPVDLRIR 174 + + V +++ Sbjct: 451 QAQLYLAVAQKLQ 463 >gi|160943094|ref|ZP_02090331.1| hypothetical protein FAEPRAM212_00573 [Faecalibacterium prausnitzii M21/2] gi|158445563|gb|EDP22566.1| hypothetical protein FAEPRAM212_00573 [Faecalibacterium prausnitzii M21/2] Length = 894 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 58/159 (36%), Gaps = 21/159 (13%) Query: 32 HASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT--EKAIAFYQDIL 89 + + V+ +F A + + + +T +K Y DI Sbjct: 550 WLKIARTVYTSLESVTVDGKFGAGTAAAVRRFQRYFGLTADGVVGRTTWQKLYEVYNDIA 609 Query: 90 SR--------GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYV 138 +R G +P + L G++ +V+ L+ L + + P + F A Sbjct: 610 NRLLSSSLRPGEYPGV----LRSGSTGTAVRELQFYLYLMSAYESSIPPVSIDGKFGADT 665 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 E AV+ +Q GL G+V +T ++ R QL+ Sbjct: 666 ERAVRAYQRFAGLTVDGVVGRTTWNSL----YGRASQLR 700 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 6/80 (7%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLF 145 LS G W + L G S +V++++ L D PS + F +AV+ F Sbjct: 437 LSNGTWND---TVLSTGASGSAVEQVQFWLNTLAQYDSAIPSVKVDGVFGTATANAVRAF 493 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q ++GL G+V +T + + Sbjct: 494 QRKYGLTVDGIVGQTTWKEL 513 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P PL G+ +V L+ +L I+ D + F + + + V+ FQ + L Sbjct: 343 PGTPLRQGSRGAAVFTLQRQLNRITKDYPFLGKLTVDGVFGSRMAATVRAFQKQFNLTAD 402 Query: 155 GMVDSSTLE 163 G+V T Sbjct: 403 GVVGRQTWY 411 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 25/137 (18%) Query: 51 RFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL------------- 97 ++D+ + V + + Q + + I+ + W EL Sbjct: 468 QYDSAIPSVKVDGVFGTATANAVRAFQRKYGLTV-DGIVGQTTWKELYDEFLSIQSDNGT 526 Query: 98 ----PIRPLHLGNSSVSVQRL-----RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 P PL G+S +V+ + R + + S + F A +AV+ FQ Sbjct: 527 PNAYPGTPLREGSSGQNVRLVQFWLKIARTVYTSL--ESVTVDGKFGAGTAAAVRRFQRY 584 Query: 149 HGLDPSGMVDSSTLEAM 165 GL G+V +T + + Sbjct: 585 FGLTADGVVGRTTWQKL 601 >gi|110641799|ref|YP_669529.1| hypothetical protein ECP_1625 [Escherichia coli 536] gi|191171695|ref|ZP_03033242.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli F11] gi|300987772|ref|ZP_07178350.1| LysM domain protein [Escherichia coli MS 200-1] gi|110343391|gb|ABG69628.1| hypothetical protein YnhG precursor [Escherichia coli 536] gi|190908025|gb|EDV67617.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli F11] gi|300306060|gb|EFJ60580.1| LysM domain protein [Escherichia coli MS 200-1] gi|324011457|gb|EGB80676.1| LysM domain protein [Escherichia coli MS 60-1] Length = 334 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 58/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ ++ + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQIYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|119773864|ref|YP_926604.1| ErfK/YbiS/YcfS/YnhG [Shewanella amazonensis SB2B] gi|119766364|gb|ABL98934.1| ErfK/YbiS/YcfS/YnhG [Shewanella amazonensis SB2B] Length = 304 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 51/162 (31%), Gaps = 42/162 (25%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRS-TVIVGRVDRQTPI-LHSRINRIMFNPYWVI 246 +++NI L GK + + +G+V R TP + + R NP W Sbjct: 91 PDAPREGIVINIAEMRLYYYPKGKKIVEVLPIGIGQVGRDTPENWVTTVQRKRANPTWT- 149 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P + I+K+ A G + W G N Sbjct: 150 PTARIRKEYAAK-------------------GVTLPPV---W------------PAGPDN 175 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 M + + H T F +R + GCVR+R+ Sbjct: 176 PMGLFALYIGNLYAI--HGTNAT--FGIGLR-VSQGCVRLRD 212 >gi|152986703|ref|YP_001347671.1| hypothetical protein PSPA7_2300 [Pseudomonas aeruginosa PA7] gi|150961861|gb|ABR83886.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 323 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 47/157 (29%), Gaps = 42/157 (26%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 V++N+ L G+ V + +GR +PI ++RI +P W P SI + Sbjct: 98 VVINLAEYRLYYYPKGQDVVHTYPLGIGREGWGSPIANTRITAKTKDPAWYPPASIRAE- 156 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ + PG N + K+ Sbjct: 157 ----------------------------------HAADGDPLPTVVPPGPDNPLGPYKLT 182 Query: 315 FYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 H + + F R + GC R+ N Sbjct: 183 LGVPGYLI--HGSNKK--FGIGTRT-SHGCFRMYNAD 214 >gi|323968444|gb|EGB63850.1| ykud domain-containing protein [Escherichia coli M863] gi|323978185|gb|EGB73271.1| ykud domain-containing protein [Escherichia coli TW10509] gi|327252795|gb|EGE64449.1| lysM domain protein [Escherichia coli STEC_7v] Length = 334 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|331653078|ref|ZP_08354083.1| putative LysM domain protein [Escherichia coli M718] gi|331049176|gb|EGI21248.1| putative LysM domain protein [Escherichia coli M718] Length = 334 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|23309016|ref|NP_602284.2| N-acetylmuramoyl-L-alanine amidase [Corynebacterium glutamicum ATCC 13032] gi|21325865|dbj|BAC00486.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium glutamicum ATCC 13032] Length = 414 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 9/102 (8%) Query: 102 LHLGNS--SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 GN V ++ L G + + F AV +Q+ +G+ G+ Sbjct: 113 YQPGNQLVGDDVVEIQSHLQELGFY--ADRVDGHFGELTHKAVMNYQLNYGMQVDGICGP 170 Query: 160 STLEAMNVPVDLRIR----QLQVNLMRIKKLLEQKMGLRYVL 197 T+ A++ + LRI+ Q R++ + G R V+ Sbjct: 171 DTIRALSR-LGLRIKGGSAQAIRERERMRNAGPRLAGKRVVI 211 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 13/80 (16%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK-------------GLSVAFDAYVESAVKLF 145 + L +G+ S V +R L G ++ FD + ++K F Sbjct: 20 SKVLRVGDRSPRVAEVRTTLARLGVIEGYSREMSAKTESQKFHEEETLFDEELSLSIKSF 79 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q G+ PSG++D TL A+ Sbjct: 80 QQARGVVPSGLIDDPTLRAI 99 >gi|295103234|emb|CBL00778.1| Putative peptidoglycan-binding domain-containing protein [Faecalibacterium prausnitzii SL3/3] Length = 156 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 6/152 (3%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINE--SYHSI-VNDRFDNFLARVDMGIDSDIPIISKE 73 Y +L G S + + + L+ + + Y ++ + +F R + Sbjct: 7 YSLLQRGSSGPDVALVQTWLNGVRDACTWYDALKADGKFGASTQRAVQEFQLKNKMNMDG 66 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + Q + + + G P LH G S +V+ ++++L G+ G Sbjct: 67 KVGQNTWNVLYTRYTAKHGLKVPYPGIVLHTGASGGTVRLVQQKLNSLGERLKDDGK--- 123 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + A +AV+ FQ R+GL G V +T E M Sbjct: 124 YGAATAAAVQRFQRRNGLTADGSVGCATWEKM 155 >gi|317128889|ref|YP_004095171.1| NLP/P60 protein [Bacillus cellulosilyticus DSM 2522] gi|315473837|gb|ADU30440.1| NLP/P60 protein [Bacillus cellulosilyticus DSM 2522] Length = 470 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 18/163 (11%) Query: 15 FVYLILPMGLSLVEKPIHASV-----LDEIINESYHSIVNDRFDN---FLARVDMGIDSD 66 F + V+ P S+ + + N + N F R + Sbjct: 46 FPQPLSSSAQIDVQSPYAQSLPVFQHSNTLNNNLFDQSKNQNFLTTSSLAERTSAVKAKN 105 Query: 67 IPIISKETIAQTEKAIAFYQ-DIL---SRGGWPELPIRPLHLGNSSVSVQRLRERLIISG 122 +P ++++ +A + +I ++ WP + L +G+ V+ ++E L G Sbjct: 106 VPT--EKSLRLIINQLANEEFEIKTDTNKNVWPVDTV--LSIGDHGPKVKIIQEHLSEIG 161 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + E AV+ +Q HGL+ +G VD T+ + Sbjct: 162 YYVQE--IDGLYGEKTEKAVERYQKEHGLNITGKVDHETIIYL 202 Score = 45.6 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 33/80 (41%), Gaps = 5/80 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G+ ++ L+E L +G + + + + + + AV++ Q + L G+ Sbjct: 257 FQYGDEHEDIKELQELLNKAGYYNGT--IDGIYGSNTQQAVRMLQRDNDLMVDGLAGDQV 314 Query: 162 LEAMNVPVDLRIRQLQVNLM 181 + + ++++ NL Sbjct: 315 FDFL---KSSDLKKIADNLE 331 >gi|88811264|ref|ZP_01126520.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrococcus mobilis Nb-231] gi|88791803|gb|EAR22914.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrococcus mobilis Nb-231] Length = 353 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 68/229 (29%), Gaps = 87/229 (37%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAV-----ENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 +K + + +++NIP L + + V +GR D TP+ + + Sbjct: 126 RKFILPRAPREGIVINIPELRLYYYPPAAKGKARQVITHPVGLGRQDWATPLGRASVVEK 185 Query: 239 MFNPYWVIPRSI-----IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 + P W P SI + + + + Sbjct: 186 IPQPTWYPPASIRAEHAARGEKLPGIV--------------------------------- 212 Query: 294 PNFIFRQDPGKINAMASTKIEFYSRNNT--Y-MHDTPEPILFNNVVRFETSGCVRVRNII 350 PG N + + + Y +H T +P + +R + GC+R+ Sbjct: 213 -------PPGPNNPLGEYVLLL----SIPGYLIHGTNKP--YGVGMR-VSHGCIRL-YPE 257 Query: 351 DLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFV---YISAW 396 D+ + +++ + PVH V Y AW Sbjct: 258 DIARF-----------------------FARVSRKTPVHIVDQPYKLAW 283 >gi|298529337|ref|ZP_07016740.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510773|gb|EFI34676.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfonatronospira thiodismutans ASO3-1] Length = 351 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 51/164 (31%), Gaps = 48/164 (29%) Query: 184 KKLLEQKMGLRYVLVNIPAASL-EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 L + G +++N+P L + + V +GR +TP +R+ + + +P Sbjct: 116 WILPPTRHGE--IVINLPEMRLYRFYRDIDMVRTYPVGIGRDGFETPPGDARVQKRVEDP 173 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P S P Sbjct: 174 SWTVPPS-----------------AREGFS------------------------RVVVPP 192 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 G N + I SR++ +H T P V R + GC+R+ Sbjct: 193 GPDNPLGGYWIGL-SRDSLGIHGTNFPW---GVGRKVSRGCIRL 232 >gi|226502831|ref|NP_001142095.1| hypothetical protein LOC100274259 [Zea mays] gi|194707100|gb|ACF87634.1| unknown [Zea mays] Length = 370 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLS--VAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 HLG + ++++ L G L P S FDA +E A+K++Q GL +G++D+S Sbjct: 56 HLGEQQQGLAKVKDYLSRFGYLPPESSGSFNDVFDADLEEAIKVYQRNFGLGITGVMDAS 115 Query: 161 TLEAM 165 T+ M Sbjct: 116 TVAQM 120 >gi|200389916|ref|ZP_03216527.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602361|gb|EDZ00907.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 333 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L V+VN+ L G+ + +G +TP++ +RI + + NP W Sbjct: 88 MLLPDAPREGVIVNLAELRLYYYPPGENRVQVYPIGIGLQGLETPVMDTRIGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + + G Sbjct: 148 TPTAGIRQRSL------------ERGITL---------PPVI--------------PAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|62179965|ref|YP_216382.1| LysM domain-containing protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127598|gb|AAX65301.1| putative LysM domain [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714432|gb|EFZ06003.1| LysM domain-containing protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 333 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L V+VN+ L G+ + +G +TP++ +RI + + NP W Sbjct: 88 MLLPDAPREGVIVNLAELRLYYYPPGENRVQVYPIGIGLQGLETPVMDTRIGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + + G Sbjct: 148 TPTAGIRQRSL------------ERGITL---------PPVI--------------PAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|282852054|ref|ZP_06261412.1| C-terminal processing peptidase [Lactobacillus gasseri 224-1] gi|282556814|gb|EFB62418.1| C-terminal processing peptidase [Lactobacillus gasseri 224-1] Length = 454 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V V L++ L G L K ++ FD ++AV FQ H L G+V+ Sbjct: 365 LKRSMTGVDVATLQQYLTALGYLP--KHVTGVFDDETKNAVIKFQKEHDLTTDGIVNGQV 422 Query: 162 LEAMNVPVDLRIR 174 + + V +++ Sbjct: 423 QAQLYLAVAQKLQ 435 >gi|116629567|ref|YP_814739.1| periplasmic protease [Lactobacillus gasseri ATCC 33323] gi|311110789|ref|ZP_07712186.1| carboxy- processing proteinase [Lactobacillus gasseri MV-22] gi|116095149|gb|ABJ60301.1| Periplasmic protease [Lactobacillus gasseri ATCC 33323] gi|311065943|gb|EFQ46283.1| carboxy- processing proteinase [Lactobacillus gasseri MV-22] Length = 482 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V V L++ L G L K ++ FD ++AV FQ H L G+V+ Sbjct: 393 LKRSMTGVDVATLQQYLTALGYLP--KHVTGVFDDETKNAVIKFQKEHDLTTDGIVNGQV 450 Query: 162 LEAMNVPVDLRIR 174 + + V +++ Sbjct: 451 QAQLYLAVAQKLQ 463 >gi|302391951|ref|YP_003827771.1| ErfK/YbiS/YcfS/YnhG family protein [Acetohalobium arabaticum DSM 5501] gi|302204028|gb|ADL12706.1| ErfK/YbiS/YcfS/YnhG family protein [Acetohalobium arabaticum DSM 5501] Length = 312 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + L+ L G D + + Y+ AVK FQ + L +G+V+ S + + Sbjct: 45 MEGNDIWELQRELKKLGFYDQQLNSTYNWSTYL--AVKEFQKANDLPTTGVVNESIWQQI 102 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 ++++ + LE G ++L++ + +G+ V VG+ Sbjct: 103 ----AHKLKKGEKITEASSDDLEAPEGEVFLLIDTYKKKMTVYSDGEPYHEFPVAVGKPS 158 Query: 226 RQTPI 230 ++PI Sbjct: 159 TKSPI 163 Score = 40.2 bits (93), Expect = 0.58, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G + V +E+L G F E A+K F+ +GL D +T Sbjct: 248 LRPGQTGKDVLLFQEKLREYGF--DPGYTDGRFGDSTEKAIKEFKYIYGLQDDLTADQNT 305 Query: 162 LEAMN 166 +N Sbjct: 306 FYILN 310 >gi|157370425|ref|YP_001478414.1| ErfK/YbiS/YcfS/YnhG family protein [Serratia proteamaculans 568] gi|157322189|gb|ABV41286.1| ErfK/YbiS/YcfS/YnhG family protein [Serratia proteamaculans 568] Length = 337 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 65/198 (32%), Gaps = 47/198 (23%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++VN+ L G+ + + +G+ TP+ + +++ + NP W +I +K Sbjct: 100 IVVNLAELRLYYYPKGENKVIVYPIGIGQTGMHTPLQVTSVSQKIPNPTWTPTANI-RKR 158 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + + P + G N M + Sbjct: 159 YLEKGVKLPGVV----------------------------------PAGPENPMGLFAMR 184 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH-----I 368 + Y +H T F +R +SGC+R+ D+ L P +R + Sbjct: 185 LAMGHGEYLIHGTNAN--FGIGMR-VSSGCIRL-RPTDI-EALFNMVPRGTRVQVINDPV 239 Query: 369 EEVVKTRKTTPVKLATEV 386 + V+ V++ + Sbjct: 240 KISVEPDGKRYVEVHQPL 257 >gi|163802698|ref|ZP_02196589.1| putative general secretion pathway protein A [Vibrio sp. AND4] gi|159173586|gb|EDP58406.1| putative general secretion pathway protein A [Vibrio sp. AND4] Length = 541 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 2/77 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L ++ L + L + ++ S +D+ ++ V+LFQ G+ Sbjct: 453 WQAPLRDTLRSDMEGPAIDVLDQLLAQA--VNEQPLGSEVYDSELKERVELFQRWQGIGV 510 Query: 154 SGMVDSSTLEAMNVPVD 170 G+ TLE + V Sbjct: 511 DGIAGKQTLERLQQSVQ 527 >gi|170768916|ref|ZP_02903369.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia albertii TW07627] gi|170122464|gb|EDS91395.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia albertii TW07627] Length = 334 Score = 55.6 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|299538548|ref|ZP_07051831.1| spore cortex-lytic enzyme precursor [Lysinibacillus fusiformis ZC1] gi|298726135|gb|EFI66727.1| spore cortex-lytic enzyme precursor [Lysinibacillus fusiformis ZC1] Length = 271 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 4/81 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G V L+ RL G ++ Y A++ FQ +GL G+ + T Sbjct: 32 ITRGAYGDDVVELQARLQYLGFYKSKIDGKFGYNTY--WALRNFQENYGLPVDGIAGAKT 89 Query: 162 LEAM--NVPVDLRIRQLQVNL 180 +A+ N D + + Q+N Sbjct: 90 KKALTGNSDYDEKWVKAQLNA 110 >gi|145298314|ref|YP_001141155.1| hypothetical protein ASA_1301 [Aeromonas salmonicida subsp. salmonicida A449] gi|142851086|gb|ABO89407.1| conserved hypothetical protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 305 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 43/166 (25%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + +++N+P L GK + + +G + R+TP + + + NP W Sbjct: 88 MLLPDVPREGIVINLPELRLYYFPKGKNEVIVLPIGIGDIGRETPEMITTVIAKNPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +P ++R+ +L+ I + PG Sbjct: 148 -VP--------GPMVRK--SWLEQKGISL-----------------------PAVVPPGP 173 Query: 305 INAMASTKIEFYSRNNT--Y-MHDTPEPILFNNVVRFETSGCVRVR 347 N + K Y +H T + F +R ++GC+R+R Sbjct: 174 DNPLG--KFAMRLGYGKRDYLIHGTNKE--FGVGLR-VSAGCIRLR 214 >gi|222054295|ref|YP_002536657.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. FRC-32] gi|221563584|gb|ACM19556.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. FRC-32] Length = 304 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 54/164 (32%), Gaps = 45/164 (27%) Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENG--KVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ Q +++N+ L G K L V +G ++TP+ + + NP Sbjct: 100 WIIPQLPVQEGIVINLAEMRLYFFAPGDRKRILTFPVSIGEAGKETPLGSFSVIEKLANP 159 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W +P SI+Q+ LR+ + Sbjct: 160 VWHVPPSILQER--PELRK----------TV---------------------------AA 180 Query: 303 GKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 G N + S + ++ +H T P R + GC+R+ Sbjct: 181 GPDNPLGSRALRLSIKD-VLIHGTNRPW---GQGRRVSHGCLRL 220 >gi|148378207|ref|YP_001252748.1| spore-cortex-lytic enzyme [Clostridium botulinum A str. ATCC 3502] gi|153930851|ref|YP_001382608.1| spore-cortex-lytic enzyme [Clostridium botulinum A str. ATCC 19397] gi|153935278|ref|YP_001386160.1| spore-cortex-lytic enzyme [Clostridium botulinum A str. Hall] gi|153939602|ref|YP_001389567.1| spore-cortex-lytic enzyme [Clostridium botulinum F str. Langeland] gi|170755801|ref|YP_001779835.1| spore-cortex-lytic enzyme [Clostridium botulinum B1 str. Okra] gi|170758560|ref|YP_001785532.1| spore-cortex-lytic enzyme [Clostridium botulinum A3 str. Loch Maree] gi|148287691|emb|CAL81756.1| spore cortex-lytic enzyme precursor [Clostridium botulinum A str. ATCC 3502] gi|152926895|gb|ABS32395.1| spore-cortex-lytic enzyme [Clostridium botulinum A str. ATCC 19397] gi|152931192|gb|ABS36691.1| spore-cortex-lytic enzyme [Clostridium botulinum A str. Hall] gi|152935498|gb|ABS40996.1| spore-cortex-lytic enzyme [Clostridium botulinum F str. Langeland] gi|169121013|gb|ACA44849.1| spore-cortex-lytic enzyme [Clostridium botulinum B1 str. Okra] gi|169405549|gb|ACA53960.1| spore-cortex-lytic enzyme [Clostridium botulinum A3 str. Loch Maree] gi|295317664|gb|ADF98041.1| spore-cortex-lytic enzyme [Clostridium botulinum F str. 230613] gi|322804472|emb|CBZ02022.1| spore cortex-lytic enzyme, lytic transglycosylase SleB [Clostridium botulinum H04402 065] Length = 231 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 11/100 (11%) Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLH---------LGNSSVSVQRLRERLIISGDLDPS 127 ++AI + I+ G L I P G+ + +++ +L G + Sbjct: 6 YLKRAIIYVLAIMLAYGSTTLYILPYTNATKAVAYYYGHRGDIISQVQRKLKAWGYYNG- 64 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 G+ F +AV+ FQ ++GL G++ TL A+ + Sbjct: 65 -GVDGIFGHQTYTAVRYFQSKNGLTVDGIIGDKTLVALGI 103 >gi|328957385|ref|YP_004374771.1| carboxy-terminal processing protease [Carnobacterium sp. 17-4] gi|328673709|gb|AEB29755.1| carboxy-terminal processing protease [Carnobacterium sp. 17-4] Length = 497 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L + S V+ L + L G P + + FD E AVK FQ L G+V Sbjct: 404 SKTYQLKDVSAEVENLEKVLEALGY--PVESVDGYFDESTEEAVKQFQTDKKLPVDGIVT 461 Query: 159 SSTLEAM 165 T + Sbjct: 462 GETATQL 468 >gi|237806833|ref|YP_002891273.1| ErfK/YbiS/YcfS/YnhG family protein [Tolumonas auensis DSM 9187] gi|237499094|gb|ACQ91687.1| ErfK/YbiS/YcfS/YnhG family protein [Tolumonas auensis DSM 9187] Length = 307 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 49/162 (30%), Gaps = 42/162 (25%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRS-TVIVGRVDRQTPI-LHSRINRIMFNPYWVI 246 + +++N+ L GK + + +G++ TP + + R NP W Sbjct: 94 PDTPRQGIVINVAEMRLYYYPKGKNTVEVLPIGIGQLGTDTPENWVTSVQRKRANPTWT- 152 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P + ++++ W G N Sbjct: 153 PTAKVRREYAEKG----------------------EPLPAVW------------PAGPDN 178 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 M + + H T P F +R + GCVR+RN Sbjct: 179 PMGLFALYIGNLYAI--HGTNAP--FGIGLR-VSHGCVRLRN 215 >gi|91210891|ref|YP_540877.1| hypothetical protein UTI89_C1870 [Escherichia coli UTI89] gi|91072465|gb|ABE07346.1| hypothetical protein YnhG precursor [Escherichia coli UTI89] gi|307626836|gb|ADN71140.1| hypothetical protein UM146_08765 [Escherichia coli UM146] Length = 334 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQRLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|84496825|ref|ZP_00995679.1| hypothetical protein JNB_04860 [Janibacter sp. HTCC2649] gi|84383593|gb|EAP99474.1| hypothetical protein JNB_04860 [Janibacter sp. HTCC2649] Length = 340 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 3/77 (3%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + + G + V ++ L G S + F + VK FQ L Sbjct: 207 PTIAWSTVKSGATGFRVTTIQHLLKARG---QSLTVDGVFGSVTVGKVKAFQTSRSLLAD 263 Query: 155 GMVDSSTLEAMNVPVDL 171 G+V T A+ V V Sbjct: 264 GVVGPKTWAALVVTVKS 280 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 9/93 (9%) Query: 80 KAIAFYQDILSRG-----GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 KA + +L+ G W L + + G+S +V ++ L G + G F Sbjct: 252 KAFQTSRSLLADGVVGPKTWAAL-VVTVKSGSSGQAVIGAQKALTARGYTCTADG---VF 307 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + S K FQ GL G+V T + + Sbjct: 308 GSVTVSKAKAFQTSRGLLADGVVGPVTWAKLTI 340 >gi|168240884|ref|ZP_02665816.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194450901|ref|YP_002045380.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194409205|gb|ACF69424.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339516|gb|EDZ26280.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 333 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L V+VN+ L G+ + +G +TP++ +RI + + NP W Sbjct: 88 MLLPDAPREGVIVNLAELRLYYYPPGENRVQVYPIGIGLQGLETPVMDTRIGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + + G Sbjct: 148 TPTAGIRQRSL------------ERGITL---------PPVI--------------PAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|159901701|ref|YP_001547947.1| peptidoglycan binding domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894740|gb|ABX07819.1| Peptidoglycan-binding domain 1 protein [Herpetosiphon aurantiacus ATCC 23779] Length = 322 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 4/78 (5%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 I+ W +L I G+ +V V+ L+++L G S + F A +AVK FQ Sbjct: 86 IVGPNTWEKLVIETNQ-GDVNVVVKALQKQLNKHG---ASLTVDGDFGAATLTAVKSFQG 141 Query: 148 RHGLDPSGMVDSSTLEAM 165 R GL G V +T A+ Sbjct: 142 RKGLTQDGSVGPNTWAAL 159 Score = 45.2 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 17/97 (17%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 + W ++ G+S V+V ++ L G S + F + VK FQ Sbjct: 27 AAARTWAQVND-----GDSGVNVYTVQALLKQRGY---SLDVDGDFGDQTLATVKSFQGS 78 Query: 149 HGLDPSGMVDSSTLEAM---------NVPVDLRIRQL 176 GL G+V +T E + NV V +QL Sbjct: 79 KGLTKDGIVGPNTWEKLVIETNQGDVNVVVKALQKQL 115 >gi|16764725|ref|NP_460340.1| hypothetical protein STM1375 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161614211|ref|YP_001588176.1| hypothetical protein SPAB_01954 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167994396|ref|ZP_02575488.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168263798|ref|ZP_02685771.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463218|ref|ZP_02697149.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194442385|ref|YP_002040630.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|198245212|ref|YP_002215752.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207857119|ref|YP_002243770.1| hypothetical protein SEN1670 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|16419895|gb|AAL20299.1| putative LysM domain protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161363575|gb|ABX67343.1| hypothetical protein SPAB_01954 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401048|gb|ACF61270.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|195634222|gb|EDX52574.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197939728|gb|ACH77061.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205327768|gb|EDZ14532.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205347648|gb|EDZ34279.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708922|emb|CAR33252.1| putative exported protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261246583|emb|CBG24393.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993262|gb|ACY88147.1| hypothetical protein STM14_1669 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157910|emb|CBW17405.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912360|dbj|BAJ36334.1| hypothetical protein STMDT12_C13910 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224001|gb|EFX49064.1| L,D-transpeptidase YnhG [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129645|gb|ADX17075.1| putative L,D-transpeptidase YnhG [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326623500|gb|EGE29845.1| Peptidoglycan-binding LysM [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332988262|gb|AEF07245.1| hypothetical protein STMUK_1341 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 333 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L V+VN+ L G+ + +G +TP++ +RI + + NP W Sbjct: 88 MLLPDAPREGVIVNLAELRLYYYPPGENRVQVYPIGIGLQGLETPVMDTRIGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + + G Sbjct: 148 TPTAGIRQRSL------------ERGITL---------PPVI--------------PAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|154686370|ref|YP_001421531.1| CtpA [Bacillus amyloliquefaciens FZB42] gi|154352221|gb|ABS74300.1| CtpA [Bacillus amyloliquefaciens FZB42] Length = 467 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 9/104 (8%) Query: 79 EKAIA-FYQ-DILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 +K I YQ + P L + G+S +V ++ L G S ++ +D Sbjct: 354 KKGIKPQYQVKLPEYANLPYLDAKKTYKYGDSGTTVTNAQKMLKALGY---SVKVNGTYD 410 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 E AVK FQ + L +G++ T + + +QL N Sbjct: 411 KAFEQAVKQFQAKEKLKQTGIITGDTTAKLMTDLQ---KQLADN 451 >gi|312794502|ref|YP_004027425.1| carboxyl-terminal protease [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181642|gb|ADQ41812.1| carboxyl-terminal protease [Caldicellulosiruptor kristjanssonii 177R1B] Length = 472 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + G+ + V ++RL G L + D +AVK FQ + L SG++D Sbjct: 381 TKKFKKGDMDLEVLAAQQRLFYLGYLS---SWTAKMDDSTVAAVKKFQKDNKLYTSGVLD 437 Query: 159 SSTLEAMN 166 +T + +N Sbjct: 438 ITTQKKLN 445 >gi|302794749|ref|XP_002979138.1| hypothetical protein SELMODRAFT_110370 [Selaginella moellendorffii] gi|300152906|gb|EFJ19546.1| hypothetical protein SELMODRAFT_110370 [Selaginella moellendorffii] Length = 361 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Query: 91 RGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMR 148 G W +L + H G+S ++Q+L+ + G L S ++FD +E+AV+L+Q Sbjct: 37 AGAWADLLSLVDAHKGDSKPAIQKLKSYFVDFGYLGNSTLTADLSFDDALEAAVRLYQQN 96 Query: 149 HGLDPSGMVDSSTLEAMNVP 168 L +G +DS+T+ + P Sbjct: 97 FHLPVTGNLDSATIAQLVTP 116 >gi|168239256|ref|ZP_02664314.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168822241|ref|ZP_02834241.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194738000|ref|YP_002114390.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204927803|ref|ZP_03219004.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194713502|gb|ACF92723.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197287980|gb|EDY27367.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204323145|gb|EDZ08341.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205341306|gb|EDZ28070.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086144|emb|CBY95918.1| Uncharacterized protein ynhG Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322616759|gb|EFY13668.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619981|gb|EFY16854.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622292|gb|EFY19137.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627815|gb|EFY24605.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633086|gb|EFY29829.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636668|gb|EFY33371.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641307|gb|EFY37948.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644925|gb|EFY41458.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650236|gb|EFY46650.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655811|gb|EFY52113.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660137|gb|EFY56376.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665297|gb|EFY61485.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669554|gb|EFY65702.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673480|gb|EFY69582.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677408|gb|EFY73472.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679929|gb|EFY75968.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687401|gb|EFY83373.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192354|gb|EFZ77585.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198627|gb|EFZ83728.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203108|gb|EFZ88139.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208673|gb|EFZ93611.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213812|gb|EFZ98590.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217650|gb|EGA02365.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218998|gb|EGA03508.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227187|gb|EGA11360.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229452|gb|EGA13575.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232675|gb|EGA16771.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240287|gb|EGA24331.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242725|gb|EGA26746.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245936|gb|EGA29924.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252513|gb|EGA36357.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255061|gb|EGA38848.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323267154|gb|EGA50639.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271522|gb|EGA54943.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 333 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L V+VN+ L G+ + +G +TP++ +RI + + NP W Sbjct: 88 MLLPDAPREGVIVNLAELRLYYYPPGENRVQVYPIGIGLQGLETPVMDTRIGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + + G Sbjct: 148 TPTAGIRQRSL------------ERGITL---------PPVI--------------PAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|167551660|ref|ZP_02345414.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168233565|ref|ZP_02658623.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471756|ref|ZP_03077740.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197248056|ref|YP_002146664.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263600|ref|ZP_03163674.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|238910809|ref|ZP_04654646.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194458120|gb|EDX46959.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197211759|gb|ACH49156.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241855|gb|EDY24475.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205323528|gb|EDZ11367.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205332330|gb|EDZ19094.1| ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 333 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L V+VN+ L G+ + +G +TP++ +RI + + NP W Sbjct: 88 MLLPDAPREGVIVNLAELRLYYYPPGENRVQVYPIGIGLQGLETPVMDTRIGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + + G Sbjct: 148 TPTAGIRQRSL------------ERGITL---------PPVI--------------PAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|239944015|ref|ZP_04695952.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces roseosporus NRRL 15998] gi|239990470|ref|ZP_04711134.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces roseosporus NRRL 11379] gi|291447483|ref|ZP_06586873.1| zinc D-Ala-D-Ala carboxypeptidase [Streptomyces roseosporus NRRL 15998] gi|291350430|gb|EFE77334.1| zinc D-Ala-D-Ala carboxypeptidase [Streptomyces roseosporus NRRL 15998] Length = 259 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 35/132 (26%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L G+S +V++L+ R ++G + AF ++AV FQ +GL G+ Sbjct: 53 SGTLREGSSGEAVRQLQIR--VAGYPGTGNQIAIDGAFGPATKAAVTRFQAAYGLAADGI 110 Query: 157 VDSSTL------------------EAMNV-----------PVDLRIRQLQVNLMRIKKLL 187 +T +N R L V + +++ + Sbjct: 111 AGPATFNKIYQLQDDDCTPVNFTYAELNRCNSDWSGGKVSAATARANAL-VTMWKLQA-M 168 Query: 188 EQKMGLRYVLVN 199 MG R + VN Sbjct: 169 RHAMGDRPITVN 180 >gi|226313688|ref|YP_002773582.1| spore cortex-lytic enzyme precursor [Brevibacillus brevis NBRC 100599] gi|226096636|dbj|BAH45078.1| putative spore cortex-lytic enzyme precursor [Brevibacillus brevis NBRC 100599] Length = 215 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + G+ + V L+ RL + G D L + A AV+ FQ +GL G Sbjct: 26 SLAATQIQRGSVNGDVWDLQYRLQMLGYYD--DKLDGIYGANTTKAVRQFQKAYGLRIDG 83 Query: 156 MVDSSTLEAM 165 + +T + Sbjct: 84 ITGPNTWRVL 93 >gi|187777208|ref|ZP_02993681.1| hypothetical protein CLOSPO_00754 [Clostridium sporogenes ATCC 15579] gi|187774136|gb|EDU37938.1| hypothetical protein CLOSPO_00754 [Clostridium sporogenes ATCC 15579] Length = 232 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 11/100 (11%) Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLH---------LGNSSVSVQRLRERLIISGDLDPS 127 ++AI + ++ G L I P G+ + +++ +L G + Sbjct: 6 YLKRAIIYVLALMIAYGSTTLYILPYTNATKAVAYYYGHRGDIISQVQRKLKAWGYYNG- 64 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 G+ F +AV+ FQ ++GL G++ TL A+ + Sbjct: 65 -GVDGIFGHGTYTAVRSFQSKNGLTVDGIIGDKTLVALGI 103 >gi|289642455|ref|ZP_06474600.1| cell wall hydrolase/autolysin [Frankia symbiont of Datisca glomerata] gi|289507714|gb|EFD28668.1| cell wall hydrolase/autolysin [Frankia symbiont of Datisca glomerata] Length = 447 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 21/43 (48%) Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 D ++ FDA ++ AV+ FQ GL G+V T A+ Sbjct: 97 DAARELDAALEFDAALDRAVRAFQQSRGLSADGIVGPDTFRAL 139 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 18/137 (13%) Query: 45 HSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG-----GWPELPI 99 + D AR D + D + + + +A + + + G + L Sbjct: 82 RAGAPDTPMPAAARFDAARELDAALEFDAALDRAVRAFQQSRGLSADGIVGPDTFRALEE 141 Query: 100 RPLHLGNS-----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 LG+ V L+ERL G F E+A++ FQ Sbjct: 142 ARRKLGDRLLFYSVNHPFIGDDVASLQERLSNMGF--DVGRTDGIFGPRTEAALRDFQYN 199 Query: 149 HGLDPSGMVDSSTLEAM 165 L+P G TL + Sbjct: 200 RALEPDGRCGPLTLREL 216 >gi|15802090|ref|NP_288112.1| hypothetical protein Z2706 [Escherichia coli O157:H7 EDL933] gi|12515680|gb|AAG56665.1|AE005391_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 334 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 55/169 (32%), Gaps = 40/169 (23%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 91 PDAPRQGIIVNLAELRLYYYPPGENIXQVYPIGIGLQGLETPVMETRVGQKIPNPTWTPT 150 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 I Q+ + + I + G N Sbjct: 151 AGIRQRSL------------ERGIKL-----------------------PPVVPAGPNNP 175 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 176 LGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|289768974|ref|ZP_06528352.1| muramoyl-pentapeptide carboxypeptidase [Streptomyces lividans TK24] gi|289699173|gb|EFD66602.1| muramoyl-pentapeptide carboxypeptidase [Streptomyces lividans TK24] Length = 229 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+S V +L+ R+ + A +AVK FQ +GL G+ Sbjct: 25 RTLSQGSSGSDVTQLQIRVAGWVTSGERLSYDGQYGARTAAAVKKFQAAYGLGADGVAGP 84 Query: 160 ST---LEAM 165 +T + A+ Sbjct: 85 ATFSKIYAL 93 >gi|256785081|ref|ZP_05523512.1| muramoyl-pentapeptide carboxypeptidase [Streptomyces lividans TK24] Length = 222 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+S V +L+ R+ + A +AVK FQ +GL G+ Sbjct: 18 RTLSQGSSGSDVTQLQIRVAGWVTSGERLSYDGQYGARTAAAVKKFQAAYGLGADGVAGP 77 Query: 160 ST---LEAM 165 +T + A+ Sbjct: 78 ATFSKIYAL 86 >gi|23100366|ref|NP_693833.1| hypothetical protein OB2911 [Oceanobacillus iheyensis HTE831] gi|22778599|dbj|BAC14867.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 1115 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL LGNS + L+E L G +S F + E+ +K FQ +GL SG+ D Sbjct: 670 PLQLGNSHPDIITLKENLNHLGY--DGIAISDYFGNWTETRLKQFQEDNGLPVSGIADEI 727 Query: 161 TLEAMNVPVDLR 172 TL A+ V+ R Sbjct: 728 TLAAIEEAVENR 739 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 10/87 (11%) Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 E+ +A +++ S + LG+ ++ ++E+L G + F + Sbjct: 240 ERTLAKLEELASTDVF--------ELGDRHNAIITIKEKLNAIGF--GGISETNYFGGWT 289 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAM 165 E+ VK FQ +GL G V +T E + Sbjct: 290 ETRVKQFQQYYGLSVDGKVGPATQETL 316 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 52/144 (36%), Gaps = 20/144 (13%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 + L++K ++A D I Y + RV + ++ + T+ + Sbjct: 402 AIILLKKKLNAVGFDRISETDYFGGWTE------TRVRQFQEYYNLNVTGKADEATQNKL 455 Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 E+ P G L+E+L G +S + + +S V Sbjct: 456 D------------EVYNSPFQAGKRHEDTIELKEKLNRLGY--GHITVSTLYGNFTKSQV 501 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMN 166 K FQ +GL +G+ D +T +N Sbjct: 502 KRFQREYGLVENGIADENTWIKLN 525 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + P G + ++E+L G ++ F Y+ES VK FQ GL +G Sbjct: 179 SVYNSPFQNGKRHEDTKAIKEKLNSIGY--GPITVTTLFGNYMESQVKEFQRDQGLRVNG 236 Query: 156 MVDSSTLEAM 165 + D TL + Sbjct: 237 IADERTLAKL 246 Score = 49.1 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + P G + ++E+L G ++ F Y+ES VK FQ GL +G Sbjct: 318 SVYNSPFQNGERHEDTKAIKEKLNSIGY--GPITVTTLFGDYMESQVKEFQRDQGLRVNG 375 Query: 156 MVDSSTLEAM 165 + D TL + Sbjct: 376 IADGPTLAKL 385 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 52/144 (36%), Gaps = 14/144 (9%) Query: 30 PIHASVLDEIINESYHSIVNDR----FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 + LDE+ N + + L R+ G + + T +Q ++ Y Sbjct: 449 EATQNKLDEVYNSPFQAGKRHEDTIELKEKLNRLGYGHITVSTLYGNFTKSQVKRFQREY 508 Query: 86 ----QDILSRGGWPELPIR----PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 I W +L LG+ + ++++L G + + + Sbjct: 509 GLVENGIADENTWIKLNEAYYNASFQLGDRHEDIIEIKKQLNAIGF--GGISETNYYGGW 566 Query: 138 VESAVKLFQMRHGLDPSGMVDSST 161 E+ VK FQ + L +G+VD +T Sbjct: 567 TETRVKQFQKYYHLTVTGIVDHTT 590 Score = 43.7 bits (102), Expect = 0.057, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + P G ++E+L G +S + ++ E+ V+ FQ +GL +G Sbjct: 596 SVYNSPFQNGKRHDGTVEIKEKLNRIGF--GYITVSTLYGSFTETQVRKFQSHYGLLENG 653 Query: 156 MVDSSTLEAM 165 + D T+ + Sbjct: 654 IADEVTIAKL 663 Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 50/150 (33%), Gaps = 16/150 (10%) Query: 29 KPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPI----ISKETIAQTEKAIAF 84 P LD + N + + D + + PI + + + K Sbjct: 309 GPATQETLDSVYNSPFQNGERHE-DTKAIKEKLNSIGYGPITVTTLFGDYMESQVKEFQR 367 Query: 85 YQDILSRG--GWPEL-------PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 Q + G P L LG+ ++ L+++L G + F Sbjct: 368 DQGLRVNGIADGPTLAKLEELASTDVFELGDRHSAIILLKKKLNAVGF--DRISETDYFG 425 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + E+ V+ FQ + L+ +G D +T + Sbjct: 426 GWTETRVRQFQEYYNLNVTGKADEATQNKL 455 Score = 38.7 bits (89), Expect = 2.1, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 P G+ + ++E+L G + F + E+ V FQ + L +G VD Sbjct: 115 PYEKGDRHEDLVEIKEKLNHIGF--DGITETDYFGNWTETRVTQFQTYYQLSITGKVDQK 172 Query: 161 TLEAM 165 T+ + Sbjct: 173 TINKL 177 >gi|225573657|ref|ZP_03782412.1| hypothetical protein RUMHYD_01851 [Blautia hydrogenotrophica DSM 10507] gi|225038950|gb|EEG49196.1| hypothetical protein RUMHYD_01851 [Blautia hydrogenotrophica DSM 10507] Length = 330 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 96 ELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 ++P + L G+ V+ L+ +LI G F E AV+ FQ + L Sbjct: 177 QVPEKNFLSRGDQGEQVKNLQRQLISLSYSCGENGADGDFGKDTEKAVEAFQKEYNLTSD 236 Query: 155 GMVDSSTLEAM 165 G T++ + Sbjct: 237 GAAGPETMKKL 247 >gi|315179130|gb|ADT86044.1| general secretion pathway protein A [Vibrio furnissii NCTC 11218] Length = 530 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W + L G +V L +L L + +D V+ V++FQ + Sbjct: 446 WQPSFYQTLRSGMRGEAVTLLDVKLSRL--LGEPERHVTEYDQEVKRKVEIFQRWQHMQV 503 Query: 154 SGMVDSSTLEAM 165 G+ TL + Sbjct: 504 DGIAGRQTLRQL 515 >gi|240169597|ref|ZP_04748256.1| putative toxin subunit [Mycobacterium kansasii ATCC 12478] Length = 3193 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 +P R L L ++ V L+ L G ++ ++ F A +AV FQ GL Sbjct: 252 KPIP-RALRLNATNKDVPVLQRTLAFLGHAVNETEFKDTRFGASTRAAVLAFQKSAGLPE 310 Query: 154 SGMVDSSTLEAMN 166 +G VD TL A+N Sbjct: 311 TGHVDRGTLAALN 323 Score = 38.7 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 110 SVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V+ L + L G +D + +AVK+ Q R GLD +G + ST++A+ V Sbjct: 26 RVELLHQALGTLGLPVDAGEVDEAKLGKTTSAAVKVLQERAGLDQTGKFNKSTVDALKVH 85 Query: 169 VDLRI 173 V+ ++ Sbjct: 86 VEDQL 90 >gi|169334010|ref|ZP_02861203.1| hypothetical protein ANASTE_00402 [Anaerofustis stercorihominis DSM 17244] gi|169258727|gb|EDS72693.1| hypothetical protein ANASTE_00402 [Anaerofustis stercorihominis DSM 17244] Length = 230 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ + V+ ++E+L G D S + F A E AVK FQ ++GL G STLE Sbjct: 33 YGSPAAHVKPVQEKLKRWGYYDGS--VDGKFGAATEKAVKYFQRKNGLTQDGKAGKSTLE 90 Query: 164 AM 165 M Sbjct: 91 KM 92 >gi|56694927|ref|YP_164437.1| lysin [Bacillus phage BCJA1c] gi|52631354|gb|AAU85106.1| lysin [Bacillus phage BCJA1c] Length = 355 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 34/82 (41%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G V+ L+E+LI G G F +AV+ FQ G+ G+ T Sbjct: 215 LRHGERGPLVRSLQEQLIDKGFDLGRYGADGVFGDITRNAVRDFQRAAGIAVDGVPGPQT 274 Query: 162 LEAMNVPVDLRIRQLQVNLMRI 183 A+ + + + V++ R+ Sbjct: 275 FRALKAYQPDKGQMVIVDVDRL 296 >gi|330466869|ref|YP_004404612.1| putative muramoyl-pentapeptide carboxypeptidase [Verrucosispora maris AB-18-032] gi|328809840|gb|AEB44012.1| putative muramoyl-pentapeptide carboxypeptidase [Verrucosispora maris AB-18-032] Length = 249 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 4/68 (5%) Query: 100 RPLHLGNSSVSVQRLRERLIISGD--LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R L G + V++L+ R +SG L A+ SAV FQ +GL G+ Sbjct: 45 RTLSSGMTGEDVRQLQIR--VSGYPGYGAVLTLDGAYGPATRSAVIRFQQAYGLAADGVA 102 Query: 158 DSSTLEAM 165 + T + Sbjct: 103 GAQTFNQI 110 >gi|134299797|ref|YP_001113293.1| cell wall hydrolase SleB [Desulfotomaculum reducens MI-1] gi|134052497|gb|ABO50468.1| cell wall hydrolase, SleB [Desulfotomaculum reducens MI-1] Length = 224 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L LG VQ+L+ L G + F ++VK FQ R+GL G+V Sbjct: 15 RTLKLGIQGYDVQQLQNNLNYLGY--KAGKSDGIFGWQTYNSVKQFQARNGLKVDGVVGR 72 Query: 160 STLEAM 165 +T M Sbjct: 73 ATARTM 78 >gi|328910591|gb|AEB62187.1| bacteriophage SPbeta N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens LL3] Length = 387 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 10/80 (12%) Query: 96 ELPIRPLHLGN---SSVSVQRLRERLIISGDLDPSK----GLSVAFDAYVESAVKLFQMR 148 LP + + +V++++ L G+ A+ A +AVK FQ Sbjct: 306 SLPAGTFKVTSPLTRGEAVKQIQTALAALHYYPDKSAKNFGIDGAYGAKTANAVKRFQSM 365 Query: 149 HGLDPSGMVDSST---LEAM 165 +GL G+ T +EA+ Sbjct: 366 YGLTADGIYGPKTKAKIEAL 385 >gi|295314812|gb|ADF97556.1| PlyM31 [uncultured phage] Length = 357 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ +V+ L+ L +G L G F E+AVK FQ +GL G+ + + Sbjct: 221 GDTGAAVKTLQSELKQAGFLLSVDG---IFGKGTETAVKAFQRANGLAVDGVFGTGSQAK 277 Query: 165 MN 166 +N Sbjct: 278 LN 279 >gi|295314810|gb|ADF97555.1| PlyM30 [uncultured phage] Length = 338 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ +V+ L+ L +G L G F E+AVK FQ +GL G+ + + Sbjct: 202 GDTGAAVKTLQSELKQAGFLLSVDG---IFGKGTETAVKAFQRANGLAVDGVFGTGSQAK 258 Query: 165 MN 166 +N Sbjct: 259 LN 260 >gi|295314772|gb|ADF97536.1| PlyM11 [uncultured phage] Length = 356 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ +V+ L+ L +G L G F E+AVK FQ +GL G+ + + Sbjct: 220 GDTGAAVKTLQSELKQAGFLLSVDG---IFGKGTETAVKAFQRANGLAVDGVFGTGSQAK 276 Query: 165 MN 166 +N Sbjct: 277 LN 278 >gi|295314768|gb|ADF97534.1| PlyM9 [uncultured phage] Length = 343 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ +V+ L+ L +G L G F E+AVK FQ +GL G+ + + Sbjct: 221 GDTGAAVKTLQSELKQAGFLLSVDG---IFGKGTETAVKAFQRANGLAVDGVFGTGSQAK 277 Query: 165 MN 166 +N Sbjct: 278 LN 279 >gi|295314756|gb|ADF97528.1| PlyM3 [uncultured phage] Length = 307 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ +V+ L+ L +G L G F E+AVK FQ +GL G+ + + Sbjct: 185 GDTGAAVKTLQSELKQAGFLLSVDG---IFGKGTETAVKAFQRANGLAVDGVFGTGSQAK 241 Query: 165 MN 166 +N Sbjct: 242 LN 243 >gi|283779427|ref|YP_003370182.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pirellula staleyi DSM 6068] gi|283437880|gb|ADB16322.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pirellula staleyi DSM 6068] Length = 677 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P +P + L +G+S V L+ L + + +AVK FQ+ H L+ + Sbjct: 301 PPVP-KTLRIGSSGDLVAALQRTLNAKNPEASRLTVDGDYGPATAAAVKKFQLEHMLNET 359 Query: 155 GMVDSSTLEAMNVPVDLR 172 G +DS T +A+ P+ R Sbjct: 360 GEMDSKTWQAL-GPLVDR 376 >gi|225572655|ref|ZP_03781410.1| hypothetical protein RUMHYD_00843 [Blautia hydrogenotrophica DSM 10507] gi|225039987|gb|EEG50233.1| hypothetical protein RUMHYD_00843 [Blautia hydrogenotrophica DSM 10507] Length = 610 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG++ +V+ +++ LI G + G +F ++AVK Q ++GL G T Sbjct: 387 LQLGDTGPAVKTMQQNLITLGFDVGAFGADGSFGQDTQAAVKQAQKKYGLTVDGFYGPDT 446 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 27/62 (43%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ V+ L+ LI G + G F A E+AVK FQ GLD T Sbjct: 464 LCVGDQGGQVKELQSNLIYLGYDCGASGADGDFGADTEAAVKAFQKACGLDADSCAGPKT 523 Query: 162 LE 163 L Sbjct: 524 LA 525 >gi|7159629|emb|CAB76364.1| matrix metalloproteinase [Cucumis sativus] Length = 320 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 103 HLGNSSVSVQRLRERLIISGDL------DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 HLG++ + ++++ L G + + FD +ESA+K +Q H L PSG+ Sbjct: 55 HLGDTKQGIHQIKKYLQRFGYITTNIQKHSNPIFDDTFDHILESALKTYQTNHNLAPSGI 114 Query: 157 VDSSTLEAMNVP 168 +DS+T+ + +P Sbjct: 115 LDSNTIAQIAMP 126 >gi|294498679|ref|YP_003562379.1| putative peptidoglycan binding domain-containing protein [Bacillus megaterium QM B1551] gi|294348616|gb|ADE68945.1| putative peptidoglycan binding domain protein [Bacillus megaterium QM B1551] Length = 188 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ S V+ L++ L D+ + + F ++ VK FQ H L P G+V Sbjct: 48 TLRKGSHSSYVKDLQQSLK---DVKYNTSVDGIFGTQTQNVVKEFQTDHSLSPDGIVGPL 104 Query: 161 TLEAMNVPVDLRIR 174 T A++ R + Sbjct: 105 TWAALDENKVERKQ 118 >gi|21220813|ref|NP_626592.1| peptidodoglycan-binding membrane protein [Streptomyces coelicolor A3(2)] gi|8246786|emb|CAB92821.1| putative peptidodoglycan-binding membrane protein [Streptomyces coelicolor A3(2)] Length = 452 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 12/72 (16%) Query: 100 RPLHLGNSSVSVQRLRERL----IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS- 154 L G+ V L++RL + GDLD +D VE AV+ +Q + + Sbjct: 380 GTLSRGDQGPEVVELQQRLKEKWMYWGDLDGD------YDRQVEDAVRQYQWENRIRTDR 433 Query: 155 -GMVDSSTLEAM 165 G+ T + Sbjct: 434 VGVYGPDTRRKL 445 >gi|313113432|ref|ZP_07799021.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624159|gb|EFQ07525.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 867 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 59/147 (40%), Gaps = 17/147 (11%) Query: 32 HASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT--EKAIAFYQDIL 89 + + + + V+ +F + + + S + +T K Y DI Sbjct: 526 WLKIARTVYSNLNNITVDGKFGSATTAAVKRFQTYFGLTSDGVVGRTTWNKLYEVYNDIA 585 Query: 90 SR--------GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYV 138 ++ G +P + L G+S +V+ L+ L + + P+ G+ F A Sbjct: 586 NKLLSSSLRPGEYPGV----LRKGSSGTAVRELQFYLYLMSAYESSIPAIGIDGQFGAST 641 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAM 165 E+AV+ +Q GL G+V +T ++ Sbjct: 642 EAAVRAYQRFAGLTVDGIVGRTTWNSL 668 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLF 145 LS G W L G++ +V++L+ L + PS + + + V+ F Sbjct: 413 LSDGTWG---GTVLRTGSTGSAVEQLQFWLNTLAQYESSIPSLTVDGVYGTGTANTVRAF 469 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q ++GL G+V T + Sbjct: 470 QRKYGLTVDGVVGRDTWTEL 489 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P P+ G+S +V L+ +L I+ D + F A + + V+ FQ + L Sbjct: 319 PGSPIRQGDSGTAVFTLQRQLNRITKDYPFLGLLTVDGVFGAKMAATVRAFQKQFNLTAD 378 Query: 155 GMVDSS 160 G+V Sbjct: 379 GVVGRQ 384 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Query: 84 FYQDILSRGGWP-ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVE 139 ++ I S G P P L G S +V+ ++ L I+ + + + F + Sbjct: 492 QFRSIQSDNGTPNAYPGTALREGASGQNVRLVQFWLKIARTVYSNLNNITVDGKFGSATT 551 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAM 165 +AVK FQ GL G+V +T + Sbjct: 552 AAVKRFQTYFGLTSDGVVGRTTWNKL 577 Score = 40.2 bits (93), Expect = 0.63, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 13/160 (8%) Query: 13 CFFVYLILPMGLSLVEKPIHASVL-DEIINESYHSIVNDRFDNFLARVDMGIDSDIPIIS 71 Y +L ++ + L D+ +E+ + + + L + + Sbjct: 702 AVLYYSLLLQRIAYYFTSVEKPPLSDQYTDETAVATRSAQELLGLPETGIADADTWTAVE 761 Query: 72 KETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRL------RERLIISGDLD 125 ++ + + I G P P R + G+ V ++ R L + + Sbjct: 762 ALSLQLAAEMPNPDRSI---GHGPVYPGRAIGAGSVGPDVAQVETWLNGRSCLYCT---E 815 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F +AV+L Q R GL +G VD T A+ Sbjct: 816 GYVTENRCFGPEETAAVRLAQQRAGLLVTGTVDRGTWAAL 855 Score = 38.3 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 7/86 (8%) Query: 98 PIRPLHLGNSSVSV---QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P PL +G+S +V L +R+ LS + A + Q GL + Sbjct: 690 PGAPLTVGSSGSAVLYYSLLLQRIAYYFTSVEKPPLSDQYTDETAVATRSAQELLGLPET 749 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNL 180 G+ D+ T A V+ QL + Sbjct: 750 GIADADTWTA----VEALSLQLAAEM 771 >gi|300361594|ref|ZP_07057771.1| carboxy-terminal processing protease CtpA [Lactobacillus gasseri JV-V03] gi|300354213|gb|EFJ70084.1| carboxy-terminal processing protease CtpA [Lactobacillus gasseri JV-V03] Length = 482 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V V L++ L G L K ++ FD ++AV FQ H L G+V+ Sbjct: 393 LKKSMTGVDVATLQQYLTALGYLP--KHVTGVFDDETKNAVIKFQKEHNLTTDGIVNGQV 450 Query: 162 LEAMNVPVDLRIR 174 + + V +++ Sbjct: 451 QAQLYLAVAQKLQ 463 >gi|29654868|ref|NP_820560.1| LysM domain-containing protein [Coxiella burnetii RSA 493] gi|161831280|ref|YP_001597412.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii RSA 331] gi|29542137|gb|AAO91074.1| hypothetical exported protein [Coxiella burnetii RSA 493] gi|161763147|gb|ABX78789.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii RSA 331] Length = 314 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 61/177 (34%), Gaps = 44/177 (24%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGL-RSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + +++N+ A L GK V +GR + TP+ I + + NP WV+P Sbjct: 89 PPVPKEGIVINLAAMRLYYFPKGKNYFYTYPVGIGRFNWSTPLGKLHIIQKIKNPVWVVP 148 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI++ E G V G N Sbjct: 149 DSILRY--------------------RQENGDPVPKMM---------------PSGPENP 173 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + TY +H T +P +V R ++GC+ + +I L + DTP Sbjct: 174 LGYYALRLSQP--TYLIHGTNDPS---SVGRRSSAGCIHLYPEDIKALFGMVSVDTP 225 >gi|224584113|ref|YP_002637911.1| LysM domain protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468640|gb|ACN46470.1| putative LysM domain protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 333 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L V+VN+ L G+ + +G +TP++ +RI + + NP W Sbjct: 88 MLLPDAPREGVIVNLAELRLYYYPPGENRVQVYPIGIGLQGLETPVMGTRIGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + + G Sbjct: 148 TPTAGIRQRSL------------ERGITL---------PPVI--------------PAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|157374224|ref|YP_001472824.1| peptidoglycan binding domain-containing protein [Shewanella sediminis HAW-EB3] gi|157316598|gb|ABV35696.1| peptidoglycan-binding domain 1 protein [Shewanella sediminis HAW-EB3] Length = 541 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 4/75 (5%) Query: 94 WPELPIRPLHLGNSS--VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W +P +G + +Q L L + P L FD+ +E +K FQ HGL Sbjct: 448 WQAPSDQPREIGQGANPAQIQWLENSLAHIDNTVP--RLVNRFDSQLEEQLKRFQREHGL 505 Query: 152 DPSGMVDSSTLEAMN 166 + S TL +N Sbjct: 506 RADAIAGSQTLVQLN 520 >gi|256392367|ref|YP_003113931.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Catenulispora acidiphila DSM 44928] gi|256358593|gb|ACU72090.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Catenulispora acidiphila DSM 44928] Length = 375 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 4/113 (3%) Query: 52 FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSV 111 + G+ + + + + AI ++ W L + P+ G+S +V Sbjct: 256 LNQGYTVPTSGVFDATTVAAVQDLQGAIGAIVASDGTVTDPTWEALGV-PIRQGDSGNAV 314 Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 Q L+ LI G + S FD AV+ Q HGL+P+G VD+ T A Sbjct: 315 QALQYILINKG---AALTQSGDFDHDTHKAVQDMQRLHGLEPTGKVDTETWCA 364 Score = 37.9 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 16/103 (15%) Query: 75 IAQTEKAIAFYQDILSRG----GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 +A+A I WP++ N+ V+ ++ L+ G P+ Sbjct: 215 FPTLRRAVAH--GIGQHTFPDRTWPDIYDS-----NAGPVVRVVQWLLLNQGYTVPT--- 264 Query: 131 SVAFDAYVESAVKLFQMRHG--LDPSGMVDSSTLEAMNVPVDL 171 S FDA +AV+ Q G + G V T EA+ VP+ Sbjct: 265 SGVFDATTVAAVQDLQGAIGAIVASDGTVTDPTWEALGVPIRQ 307 >gi|325924471|ref|ZP_08185993.1| putative peptidoglycan binding protein [Xanthomonas gardneri ATCC 19865] gi|325545047|gb|EGD16379.1| putative peptidoglycan binding protein [Xanthomonas gardneri ATCC 19865] Length = 1092 Score = 54.8 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 3/79 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L LG+ V+ L+ RL P + + E AV+ FQ GL +G+ Sbjct: 948 LRLGDRGQEVEFLQYRLQQVDARGPNGQAVPQDGHYGPETEHAVRQFQQDQGLPATGVAG 1007 Query: 159 SSTLEAMNVPVDLRIRQLQ 177 EA++ R L+ Sbjct: 1008 PDLDEALSQAQHARREALK 1026 >gi|271964297|ref|YP_003338493.1| hypothetical protein Sros_2792 [Streptosporangium roseum DSM 43021] gi|270507472|gb|ACZ85750.1| hypothetical protein Sros_2792 [Streptosporangium roseum DSM 43021] Length = 264 Score = 54.8 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 17/143 (11%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + L +G V+ L+ RL G + + ++AV FQ + + P+ V Sbjct: 53 PGKTLKIGAKGAEVKVLQTRLKELGYAPG--KIDGRYGGATQAAVWAFQKVNDISPTSTV 110 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL-- 215 T A+ P R K+L V +N+ + G+V L Sbjct: 111 ARRTWNALEAP-------------RTPKVLVPNGKPTRVEMNLAKQVMVLYVAGQVKLIS 157 Query: 216 RSTVIVGRVDRQTPILHSRINRI 238 ++ G +T + ++ R Sbjct: 158 HTSSGSGIPYCETANWNGKVQRF 180 >gi|119946260|ref|YP_943940.1| peptidoglycan-binding LysM:ErfK/YbiS/YcfS/YnhG protein [Psychromonas ingrahamii 37] gi|119864864|gb|ABM04341.1| Peptidoglycan-binding LysM:ErfK/YbiS/YcfS/YnhG protein [Psychromonas ingrahamii 37] Length = 322 Score = 54.8 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 73/224 (32%), Gaps = 53/224 (23%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + LL + + +++N+P L GK + +GR+ R TP + + + + +P Sbjct: 105 RMLLP-DVSHKGIVINLPELRLYYFPKGKQEVHIFPIGIGRIGRSTPTMETTVRMKIKHP 163 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P + + + + + Sbjct: 164 SWT-PTTQSRAE---------------HFQ------------------ATGKHLPSVVKA 189 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 GK N + ++ N Y +H T + F +R ++GC+R+ N D+ WL + Sbjct: 190 GKDNPLGDYALQLAYGNYEYLIHGTNKD--FGIGMR-VSAGCIRL-NPDDI-SWLFQQVS 244 Query: 362 TWSRYHIEEV---VKTRKTTPVKLATEVPV--------HFVYIS 394 T I + + L P+ +Y + Sbjct: 245 TNESVRIINQPIKIASEPNGQKMLEVHSPISRSDDDTEFSLYWT 288 >gi|319646306|ref|ZP_08000536.1| N-acetylmuramoyl-L-alanine amidase [Bacillus sp. BT1B_CT2] gi|317392056|gb|EFV72853.1| N-acetylmuramoyl-L-alanine amidase [Bacillus sp. BT1B_CT2] Length = 294 Score = 54.8 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 21/134 (15%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEK-AIAFYQDILSRGGWPELPIRP 101 H+ ++ + P +K A+ Y LP Sbjct: 169 EAHARGIAKYLGLSGGSSKQPATTAPKKEAPKKESAKKPAVKKY----------TLPTGI 218 Query: 102 LH---LGNSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +V++++E L + G+ + +AVK FQ+ HGL Sbjct: 219 YKYKSPMMKGTAVRQIQEALAALYFYPDKEAKNNGIDGYYGPKTANAVKRFQLMHGLSAD 278 Query: 155 GMVDSST---LEAM 165 G+ T +EA+ Sbjct: 279 GIYGPKTKAKIEAL 292 >gi|150392091|ref|YP_001322140.1| ErfK/YbiS/YcfS/YnhG family protein [Alkaliphilus metalliredigens QYMF] gi|149951953|gb|ABR50481.1| ErfK/YbiS/YcfS/YnhG family protein [Alkaliphilus metalliredigens QYMF] Length = 253 Score = 54.8 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ + G+ V ++ RL G L+ + L + +E A+ FQ H L S +++ Sbjct: 182 LQTIKPGDFGADVMEIQSRLRALGYLN-TDYLDGKYGPMMERALYEFQKDHNLPESAVIE 240 Query: 159 SSTLEAMNV 167 T +A+ V Sbjct: 241 WQTFQALGV 249 >gi|218249099|ref|YP_002374470.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 8801] gi|257062185|ref|YP_003140073.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 8802] gi|218169577|gb|ACK68314.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 8801] gi|256592351|gb|ACV03238.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 8802] Length = 194 Score = 54.8 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 52/171 (30%), Gaps = 52/171 (30%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +++N+ + A +N KV V +G+ +TP + + ++ NP W Sbjct: 69 TRLVLNLKQRKVYAYQNDKVLASYPVAIGKKGWETPKGNFTVTSLIVNPKW--------- 119 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS--T 311 ++P W PG + + Sbjct: 120 -------KNP------------------------WTGKVS-------APGPNSPLGERWI 141 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 ++ H TP + + GCVR+RN ++ L D T Sbjct: 142 GFATKGKDVIGFHGTPGEHVMGQ---AVSHGCVRMRNKDIKALFELVDKGT 189 >gi|153956184|ref|YP_001396949.1| spore cortex-lytic enzyme precursor [Clostridium kluyveri DSM 555] gi|219856509|ref|YP_002473631.1| hypothetical protein CKR_3166 [Clostridium kluyveri NBRC 12016] gi|146349042|gb|EDK35578.1| Spore cortex-lytic enzyme precursor [Clostridium kluyveri DSM 555] gi|219570233|dbj|BAH08217.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 230 Score = 54.8 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G+ V +++ +L G + S + + +AV+ FQ ++GL+ G Sbjct: 35 AVKAIAYYYGSRGDVVIKIQTKLRDWGYYNGS--VDGIYGYQTYTAVRYFQSKNGLNVDG 92 Query: 156 MVDSSTLEAM--NVP 168 +V +TL A+ NV Sbjct: 93 VVGDATLSALAINVS 107 >gi|153208754|ref|ZP_01946992.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii 'MSU Goat Q177'] gi|212212071|ref|YP_002303007.1| hypothetical protein CbuG_0434 [Coxiella burnetii CbuG_Q212] gi|212219291|ref|YP_002306078.1| hypothetical protein CbuK_1807 [Coxiella burnetii CbuK_Q154] gi|120575786|gb|EAX32410.1| ErfK/YbiS/YcfS/YnhG family protein [Coxiella burnetii 'MSU Goat Q177'] gi|212010481|gb|ACJ17862.1| hypothetical exported protein [Coxiella burnetii CbuG_Q212] gi|212013553|gb|ACJ20933.1| hypothetical exported protein [Coxiella burnetii CbuK_Q154] Length = 314 Score = 54.8 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 61/177 (34%), Gaps = 44/177 (24%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGL-RSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + +++N+ A L GK V +GR + TP+ I + + NP WV+P Sbjct: 89 PPVPKEGIVINLAAMRLYYFPKGKNYFYTYPVGIGRFNWSTPLGKLHIIQKIKNPVWVVP 148 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 SI++ E G V G N Sbjct: 149 DSILRY--------------------RQENGDPVPKMM---------------PSGPENP 173 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + TY +H T +P +V R ++GC+ + +I L + DTP Sbjct: 174 LGYYALRLSQP--TYLIHGTNDPS---SVGRRSSAGCIHLYPEDIKALFGMVSVDTP 225 >gi|78045053|ref|YP_360576.1| putative spore cortex-lytic enzyme [Carboxydothermus hydrogenoformans Z-2901] gi|77997168|gb|ABB16067.1| putative spore cortex-lytic enzyme [Carboxydothermus hydrogenoformans Z-2901] Length = 226 Score = 54.8 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +G+ V + +L+ G + FD + AV FQ + GL G+V T Sbjct: 32 YKVGSYGSKVLEIERKLVSLGY--KVYKVDKYFDVSTKKAVMAFQKKEGLKVDGIVGPVT 89 Query: 162 LEAM 165 ++ + Sbjct: 90 MKRL 93 >gi|312881706|ref|ZP_07741483.1| general secretion pathway protein A [Vibrio caribbenthicus ATCC BAA-2122] gi|309370596|gb|EFP98071.1| general secretion pathway protein A [Vibrio caribbenthicus ATCC BAA-2122] Length = 537 Score = 54.8 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 7/76 (9%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L LG V L + L + L S F+ + + V+ FQ GL+ G+ Sbjct: 455 RTLQLGMKGKDVISLDQSLSKA--LGKPISDSKEFNQQLLNKVREFQGWQGLNVDGIAGQ 512 Query: 160 STLEAMNVPVDLRIRQ 175 TL + R+ Q Sbjct: 513 QTLRHL-----ERLSQ 523 >gi|312126439|ref|YP_003991313.1| carboxyl-terminal protease [Caldicellulosiruptor hydrothermalis 108] gi|311776458|gb|ADQ05944.1| carboxyl-terminal protease [Caldicellulosiruptor hydrothermalis 108] Length = 472 Score = 54.8 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + G+ + V ++RL G L + D +AVK FQ L PSG++D Sbjct: 381 TKKFKKGDMDLEVLAAQQRLFYLGYLS---NWTAKMDDSTVAAVKKFQKDTKLYPSGVLD 437 Query: 159 SSTLEAMN 166 +T + +N Sbjct: 438 ITTQKKLN 445 >gi|304439584|ref|ZP_07399489.1| ErfK/YbiS/YcfS/YnhG family protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371963|gb|EFM25564.1| ErfK/YbiS/YcfS/YnhG family protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 257 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 11/109 (10%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 A +K FQ + +G+VD+ T + ++ N+ R++ ++ + Sbjct: 39 AARIEGIKRFQAELNVPTTGVVDAMTKKVLHTE----------NI-RVRDYVKPPTNGNW 87 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + VN+ L + +V + V VG TP + +I NP W Sbjct: 88 ITVNLINRILTMYKGNEVLYKFPVAVGASATPTPAVKGKIMNKHVNPAW 136 >gi|167908454|ref|ZP_02495659.1| bacteriophage-acquired protein [Burkholderia pseudomallei NCTC 13177] Length = 270 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AV+ Q GL G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDEQTERAVQTLQAAAGLVVDGIAGPKT 60 Query: 162 LEAM 165 + Sbjct: 61 YRVL 64 >gi|38234908|ref|NP_940675.1| putative hydrolase [Corynebacterium diphtheriae NCTC 13129] gi|38201173|emb|CAE50897.1| Putative hydrolase [Corynebacterium diphtheriae] Length = 402 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 12/79 (15%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK------------GLSVAFDAYVESAVKLFQ 146 L +G+ S + +R L G L+ + FD + A++ FQ Sbjct: 11 SGTLRVGDRSPRIAEVRTALTRLGLLEGTTKNLEQTKSDTFTDSETLFDEDLALALQGFQ 70 Query: 147 MRHGLDPSGMVDSSTLEAM 165 G+ SG ++ TL+ + Sbjct: 71 QARGIIASGEINEITLKLL 89 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 18/125 (14%) Query: 56 LARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH-----LGNS--- 107 L + +D + E +A + + I++ G E+ ++ L LG Sbjct: 43 LEQTKSDTFTDSETLFDEDLALALQGFQQARGIIASGEINEITLKLLREASYSLGARVLS 102 Query: 108 --------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 V +L+ +L G + + F +++ +Q+ +GL+P G+ Sbjct: 103 FEPNNIFVGDDVVQLQHQLQELGFY--TDRVDGRFGELTYTSLVNYQLNYGLNPDGICGP 160 Query: 160 STLEA 164 T+ A Sbjct: 161 ETIRA 165 >gi|13470669|ref|NP_102238.1| hypothetical protein mll0441 [Mesorhizobium loti MAFF303099] gi|14021411|dbj|BAB48024.1| mll0441 [Mesorhizobium loti MAFF303099] Length = 308 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 2/57 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G SV L L G L F E+AV FQ HGL G Sbjct: 184 LTRGERGPSVAALVSNLAALGYYKG--KLDDVFGYGTEAAVLAFQRDHGLTADGYAG 238 >gi|153871860|ref|ZP_02000922.1| Peptidoglycan-binding domain 1 [Beggiatoa sp. PS] gi|152071675|gb|EDN69079.1| Peptidoglycan-binding domain 1 [Beggiatoa sp. PS] Length = 134 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERL-IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P LP + +G ++ +V +R+ L I G LS FD ++ + FQ + L Sbjct: 51 PVLPPPVIKVGMTNDTVLWIRKHLDTIEGIRSELLTLSPRFDYPLKRRIIEFQRQQKLHA 110 Query: 154 SGMVDSSTLEAM 165 G+V T+ A+ Sbjct: 111 DGVVGEQTMLAL 122 >gi|256788031|ref|ZP_05526462.1| peptidodoglycan-binding membrane protein [Streptomyces lividans TK24] gi|289771919|ref|ZP_06531297.1| peptidoglycan-binding membrane protein [Streptomyces lividans TK24] gi|289702118|gb|EFD69547.1| peptidoglycan-binding membrane protein [Streptomyces lividans TK24] Length = 409 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 12/72 (16%) Query: 100 RPLHLGNSSVSVQRLRERL----IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS- 154 L G+ V L++RL + GDLD +D VE AV+ +Q + + Sbjct: 337 GTLSRGDQGPEVVELQQRLKEKWMYWGDLDGD------YDRQVEDAVRQYQWENRIRTDR 390 Query: 155 -GMVDSSTLEAM 165 G+ T + Sbjct: 391 VGVYGPDTRRKL 402 >gi|328471958|gb|EGF42835.1| general secretion pathway protein A [Vibrio parahaemolyticus 10329] Length = 539 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 3/90 (3%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L L +++ L + L + + S + FD ++ V+LFQ G+ Sbjct: 451 WQAPLKETLRLDMEGPAIEVLDQLLAKA--VSESPLETSIFDGALKERVELFQRWQGIGV 508 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQ-VNLMR 182 G+ TLE + V L +N Sbjct: 509 DGIAGHRTLERLQQSVQPNAPTLASINKEE 538 >gi|167839687|ref|ZP_02466371.1| bacteriophage-acquired protein [Burkholderia thailandensis MSMB43] Length = 270 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AV+ Q GL G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDEQTERAVQTLQAAAGLVVDGIAGPKT 60 Query: 162 LEAM 165 + Sbjct: 61 YRVL 64 >gi|153839922|ref|ZP_01992589.1| general secretion pathway protein A [Vibrio parahaemolyticus AQ3810] gi|149746554|gb|EDM57542.1| general secretion pathway protein A [Vibrio parahaemolyticus AQ3810] Length = 539 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 3/90 (3%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L L +++ L + L + + S + FD ++ V+LFQ G+ Sbjct: 451 WQAPLKETLRLDMEGPAIEVLDQLLAKA--VSESPLETSIFDGALKERVELFQRWQGIGV 508 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQ-VNLMR 182 G+ TLE + V L +N Sbjct: 509 DGIAGHRTLERLQQSVQPNAPTLASINKEE 538 >gi|28897189|ref|NP_796794.1| putative general secretion pathway protein A [Vibrio parahaemolyticus RIMD 2210633] gi|260361614|ref|ZP_05774641.1| general secretion pathway protein A [Vibrio parahaemolyticus K5030] gi|260878094|ref|ZP_05890449.1| general secretion pathway protein A [Vibrio parahaemolyticus AN-5034] gi|260895977|ref|ZP_05904473.1| general secretion pathway protein A [Vibrio parahaemolyticus Peru-466] gi|28805398|dbj|BAC58678.1| putative general secretion pathway protein A [Vibrio parahaemolyticus RIMD 2210633] gi|308086710|gb|EFO36405.1| general secretion pathway protein A [Vibrio parahaemolyticus Peru-466] gi|308089713|gb|EFO39408.1| general secretion pathway protein A [Vibrio parahaemolyticus AN-5034] gi|308111838|gb|EFO49378.1| general secretion pathway protein A [Vibrio parahaemolyticus K5030] Length = 539 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 3/90 (3%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L L +++ L + L + + S + FD ++ V+LFQ G+ Sbjct: 451 WQAPLKETLRLDMEGPAIEVLDQLLAKA--VSESPLETSIFDGALKERVELFQRWQGIGV 508 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQ-VNLMR 182 G+ TLE + V L +N Sbjct: 509 DGIAGHRTLERLQQSVQPNAPTLASINKEE 538 >gi|254183943|ref|ZP_04890534.1| putative peptidoglycan binding domain protein [Burkholderia pseudomallei 1655] gi|184214475|gb|EDU11518.1| putative peptidoglycan binding domain protein [Burkholderia pseudomallei 1655] Length = 270 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AV+ Q GL G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDEQTERAVQTLQAAAGLVVDGIAGPKT 60 Query: 162 LEAM 165 + Sbjct: 61 YRVL 64 >gi|331269554|ref|YP_004396046.1| glycosyl hydrolase, family 25 [Clostridium botulinum BKT015925] gi|329126104|gb|AEB76049.1| glycosyl hydrolase, family 25 [Clostridium botulinum BKT015925] Length = 323 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 26/63 (41%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + ++ERL+ G G F E AVK Q +GL G+V T Sbjct: 258 RRGAKGNITKIIQERLLAKGYRIGIYGADGIFGPETERAVKNLQKNYGLQIDGIVGKETW 317 Query: 163 EAM 165 +A+ Sbjct: 318 QAL 320 >gi|134288769|ref|YP_001111074.1| gp43, bacteriophage-acquired protein [Burkholderia phage phiE202] gi|167619956|ref|ZP_02388587.1| bacteriophage-acquired protein [Burkholderia thailandensis Bt4] gi|134131982|gb|ABO60730.1| gp43, bacteriophage-acquired protein [Burkholderia phage phiE202] Length = 270 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AV+ Q GL G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDEQTERAVQTLQAAAGLVVDGIAGPKT 60 Query: 162 LEAM 165 + Sbjct: 61 YRVL 64 >gi|94676943|ref|YP_588889.1| hypothetical protein BCI_0448 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220093|gb|ABF14252.1| conserved hypothetical protein [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 315 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 67/215 (31%), Gaps = 63/215 (29%) Query: 196 VLVNIPAASLEAVENGK---VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +++NI L G V L V +G + ++TP + ++R P W P + I+ Sbjct: 105 IIINIAEMRLYYYPKGTNKVVVL--PVGIGELGQETPCWVTSVHRKKHLPSWT-PSNAIK 161 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 K+ A P G N M Sbjct: 162 KEYKARGIIIPDVF----------------------------------PAGANNPMGLYA 187 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN----------IIDLDVWLLKD--- 359 + + H T F +R + GC+R+R+ + + V L+ + Sbjct: 188 LYIGNSYAI--HGTNAN--FGIGLR-ISHGCIRLRDNDLKYLFDHVPVGVRVELINEPVK 242 Query: 360 ---TPTWSRY-HIEEVVKTRKTTPVKLATEVPVHF 390 P +RY + + + T VP+H Sbjct: 243 ACIEPNGNRYLEVHDPLSTTAEQ-FNSHKPVPIHI 276 >gi|297617582|ref|YP_003702741.1| 3D domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145419|gb|ADI02176.1| 3D domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 290 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 15/127 (11%) Query: 40 INESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI-AQTEKAIAFYQDILSRGGWPELP 98 + Y + +F + + + + + +T +A+ YQ Sbjct: 59 LKGYYCGPADQKFGVKTQKAVLALQQENACRVDGIVGPETRRALDAYQ------------ 106 Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G + V RL+E L G L F AV FQ + L+ +V Sbjct: 107 PRLLFEGCTGADVTRLQETLKERGYLTGDADG--KFGPETRKAVLAFQKANSLEADAIVG 164 Query: 159 SSTLEAM 165 T +A+ Sbjct: 165 PLTRQAL 171 Score = 44.1 bits (103), Expect = 0.048, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L++G V RL+ L + G F + AV Q + G+V Sbjct: 39 RNLYVGCEGEDVARLQNTLNLKGYYCGPA--DQKFGVKTQKAVLALQQENACRVDGIVGP 96 Query: 160 STLEAM 165 T A+ Sbjct: 97 ETRRAL 102 >gi|283785092|ref|YP_003364957.1| peptidoglycan-binding protein [Citrobacter rodentium ICC168] gi|282948546|emb|CBG88136.1| putative peptidoglycan-binding protein [Citrobacter rodentium ICC168] Length = 329 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 54/172 (31%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L V+VN+ L G+ + + +G +TP++ +RI + + NP W Sbjct: 88 MLLPDAPREGVIVNLAELRLYYFPPGENIVQVYPIGIGLEGLETPVMETRIGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I ++ + G Sbjct: 148 TPTAGIRKRSL-----------------------------------ERGVTLPAVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T +P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRFALRLAYGNGEYLIHGTSQP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|53722098|ref|YP_111083.1| bacteriophage-acquired protein [Burkholderia pseudomallei K96243] gi|134288699|ref|YP_001111195.1| gp45, bacteriophage-acquired protein [Burkholderia phage phiE12-2] gi|167821706|ref|ZP_02453386.1| bacteriophage-acquired protein [Burkholderia pseudomallei 91] gi|167914793|ref|ZP_02501884.1| bacteriophage-acquired protein [Burkholderia pseudomallei 112] gi|52212512|emb|CAH38538.1| putative bacteriophage-acquired protein [Burkholderia pseudomallei K96243] gi|134132084|gb|ABO60759.1| gp45, bacteriophage-acquired protein [Burkholderia phage phiE12-2] Length = 270 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AV+ Q GL G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDEQTERAVQTLQAAAGLVVDGIAGPKT 60 Query: 162 LEAM 165 + Sbjct: 61 YRVL 64 >gi|332709805|ref|ZP_08429762.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332351403|gb|EGJ30986.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 390 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL G V+ L++RL G + F + ++AV +Q GL G+V S Sbjct: 325 PLIEGAVGSEVEELQQRLQTQGFYAGATDGD--FGSRTKAAVIAYQKAKGLYADGIVGSI 382 Query: 161 TLEAMN 166 T +N Sbjct: 383 TWSTLN 388 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ + V+ L++ L G + F AV FQ GL+P+G+V S T Sbjct: 193 LREGDTGLKVKELQQSLQTQGFSPG--PVDGIFGPATTKAVISFQKFEGLNPNGLVGSKT 250 Query: 162 LEAM 165 +A+ Sbjct: 251 WDAL 254 >gi|254193147|ref|ZP_04899582.1| putative peptidoglycan binding domain [Burkholderia pseudomallei S13] gi|254196637|ref|ZP_04903061.1| putative peptidoglycan binding domain protein [Burkholderia pseudomallei S13] gi|254197135|ref|ZP_04903558.1| putative peptidoglycan binding domain protein [Burkholderia pseudomallei S13] gi|169649901|gb|EDS82594.1| putative peptidoglycan binding domain [Burkholderia pseudomallei S13] gi|169653380|gb|EDS86073.1| putative peptidoglycan binding domain protein [Burkholderia pseudomallei S13] gi|169653877|gb|EDS86570.1| putative peptidoglycan binding domain protein [Burkholderia pseudomallei S13] Length = 270 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AV+ Q GL G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDEQTERAVQTLQAAAGLVVDGIAGPKT 60 Query: 162 LEAM 165 + Sbjct: 61 YRVL 64 >gi|302813804|ref|XP_002988587.1| hypothetical protein SELMODRAFT_128150 [Selaginella moellendorffii] gi|300143694|gb|EFJ10383.1| hypothetical protein SELMODRAFT_128150 [Selaginella moellendorffii] Length = 361 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Query: 91 RGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMR 148 G W +L + H G+S ++Q+L+ + G L S ++FD +E+AV+L+Q Sbjct: 37 AGAWADLLSLVDAHKGDSKPAIQKLKSYFVDFGYLGNSTLTADLSFDDALEAAVRLYQQN 96 Query: 149 HGLDPSGMVDSSTLEAMNVP 168 L +G +DS+T+ + P Sbjct: 97 FRLPVTGNLDSATIAQLVTP 116 >gi|254230373|ref|ZP_04923757.1| general secretion pathway protein A [Vibrio sp. Ex25] gi|262392387|ref|YP_003284241.1| general secretion pathway protein A [Vibrio sp. Ex25] gi|151937111|gb|EDN55985.1| general secretion pathway protein A [Vibrio sp. Ex25] gi|262335981|gb|ACY49776.1| general secretion pathway protein A [Vibrio sp. Ex25] Length = 538 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 2/84 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L L +++ L +RL+ + + FD ++ V+LFQ G+ Sbjct: 450 WQAPLKETLRLDMEGPAIEVL-DRLLAE-AVSEPLLETSIFDGAMKERVELFQRWQGIGV 507 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQ 177 G+ TL+ + V QL Sbjct: 508 DGIAGKRTLDRLQQNVQPDAPQLA 531 >gi|227824953|ref|ZP_03989785.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226905452|gb|EEH91370.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 242 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 + H G S V ++E+L++ G + A+K +Q GL+ Sbjct: 30 FQSADAAAFHQGESGPEVAAIQEKLLMEGY--DIGIPDGVYGERTVDAIKKYQASMGLEV 87 Query: 154 SGMVDSSTLEAM 165 G++ ST + Sbjct: 88 DGIIGDSTYMKL 99 >gi|32141264|ref|NP_733665.1| muramoyl-pentapeptide carboxypeptidase [Streptomyces coelicolor A3(2)] gi|24430040|emb|CAD55354.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces coelicolor A3(2)] Length = 244 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G S V +L+ R+ + A +AVK FQ +GL G+ Sbjct: 40 RTLSQGASGSDVTQLQIRVAGWVTSGERLSYDGQYGARTAAAVKKFQAAYGLGADGVAGP 99 Query: 160 ST---LEAM 165 +T + A+ Sbjct: 100 ATFSKIYAL 108 >gi|20807586|ref|NP_622757.1| sporulation protein and related proteins [Thermoanaerobacter tengcongensis MB4] gi|20516125|gb|AAM24361.1| sporulation protein and related proteins [Thermoanaerobacter tengcongensis MB4] Length = 780 Score = 54.8 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 6/78 (7%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G V+ L+ L G F ++AV FQ +GL G+V Sbjct: 127 SRTLRYGMQGEDVKFLQSILNKLGF--DVGTPDGIFGFKTQNAVVQFQKANGLLADGIVG 184 Query: 159 SSTLEAM----NVPVDLR 172 +T + + N P R Sbjct: 185 PATQKVLLQKVNAPSPSR 202 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 6/88 (6%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 +S G + + L G V+ L++ L G + F AV FQ Sbjct: 225 ISNGDGNAIFNKVLKYGMIGEEVKLLQQYLNKLGF--DAGVPDGIFGGKTRQAVINFQKS 282 Query: 149 HGLDPSGMVDSSTLEA----MNVPVDLR 172 L+ G+V T +A +NV + R Sbjct: 283 ANLEADGIVGPMTWQALISRLNVTLPSR 310 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V++L+E L G S + F +A+ FQ L P G+ ST Sbjct: 29 LKYGMRSPEVRKLQENLNRLGYFVTSTP-TDYFGPATLNALIKFQKDSNLVPDGIYGPST 87 Query: 162 LEAM 165 + + Sbjct: 88 EKVL 91 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 +P R L G V+ L+ L D ++ +D +AV+ FQ + L+P Sbjct: 328 FPTPFTRELKGGLQGDDVKLLQGMLSELKYYDG--DVTGTYDDVTSNAVRSFQQYYSLNP 385 Query: 154 SGMVDSSTLEAM 165 +G+ D TL+ + Sbjct: 386 TGIADVDTLKKL 397 >gi|297624717|ref|YP_003706151.1| peptidoglycan-binding domain 1 protein [Truepera radiovictrix DSM 17093] gi|297165897|gb|ADI15608.1| Peptidoglycan-binding domain 1 protein [Truepera radiovictrix DSM 17093] Length = 336 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLI-ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 W L I + G+++ +V+ ++++L G + + F E+AVK FQ GL Sbjct: 108 WGAL-ITVVRRGDNNNAVRAVQDQLANRYGY---ALAVDGVFGPATEAAVKSFQASWGLA 163 Query: 153 PSGMVDSSTLEAM 165 G+V ST A+ Sbjct: 164 QDGVVGPSTWNAL 176 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 8/72 (11%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP + G++ +V ++ L G + + +F + ESAV+ FQ L Sbjct: 48 WPTV-----RRGDAGRTVVTVQYLLRHHG---GNLSVDGSFGSATESAVRSFQSARNLTV 99 Query: 154 SGMVDSSTLEAM 165 G+V ST A+ Sbjct: 100 DGVVGPSTWGAL 111 >gi|86743213|ref|YP_483613.1| cell wall hydrolase/autolysin [Frankia sp. CcI3] gi|86570075|gb|ABD13884.1| cell wall hydrolase/autolysin [Frankia sp. CcI3] Length = 438 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 41/123 (33%), Gaps = 19/123 (15%) Query: 50 DRFD-----NFLARVDMGIDSDIPIISKETIAQTEKAIAFY--QDILSRGGWPELPIRPL 102 DRFD A S I+ +T E+A + + +P + Sbjct: 99 DRFDRDLDNALRAFQQSRGLSADGILGPDTARALEEARHKLGDRLLYHSPAYPFV----- 153 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 V L+ERL G F ESAV+ FQ GLDP G TL Sbjct: 154 -----GDDVAALQERLFNMGF--DVGRTDGIFGPRTESAVRDFQRNRGLDPDGQCGPHTL 206 Query: 163 EAM 165 + Sbjct: 207 REL 209 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + V + L G + FD +++A++ FQ GL G++ T A+ Sbjct: 75 SQGTRVPAVDGTLG--GVPAEPAEPADRFDRDLDNALRAFQQSRGLSADGILGPDTARAL 132 >gi|225016832|ref|ZP_03706024.1| hypothetical protein CLOSTMETH_00744 [Clostridium methylpentosum DSM 5476] gi|224950406|gb|EEG31615.1| hypothetical protein CLOSTMETH_00744 [Clostridium methylpentosum DSM 5476] Length = 226 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 55/139 (39%), Gaps = 22/139 (15%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ V ++++L G + + +SAV FQ + GL G+ +TL+ + Sbjct: 42 STGNEVTAIQQKLKERGLYTG--NVDGIYGPNTQSAVIKFQKQQGLSADGIAGPATLKRL 99 Query: 166 NVPVDLR--IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 + + VNL+ + + + G Y G+V + VI+ R Sbjct: 100 GITIGSTPSATTANVNLL-ARIISAEGRGESYT--------------GQVAI-GAVILNR 143 Query: 224 VDRQTPILHSRINRIMFNP 242 ++ P ++ +++ P Sbjct: 144 IEH--PSFPDTLSGVIYQP 160 >gi|255019839|ref|ZP_05291915.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus caldus ATCC 51756] gi|254970768|gb|EET28254.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus caldus ATCC 51756] Length = 309 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 51/152 (33%), Gaps = 40/152 (26%) Query: 196 VLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++++IPA L KV V + R P+ +RI + NP W +P++I Q++ Sbjct: 64 IVIDIPARRLYYFPPEQKVVYTYPVGIFRPKWPDPLGSTRIIAKVKNPSWTVPKNI-QEE 122 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 P Y PG N M +E Sbjct: 123 HAKAGEPIPAYF----------------------------------PPGPDNPMGELALE 148 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + Y+H T +P +R + GC V Sbjct: 149 -TGWSQIYIHGTNKPW--GVGMR-VSHGCFHV 176 >gi|257056977|ref|YP_003134809.1| putative peptidoglycan-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586849|gb|ACU97982.1| putative peptidoglycan-binding domain-containing protein [Saccharomonospora viridis DSM 43017] Length = 246 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G + V+ L+ R+ + + + A E+AVK FQ +GL G+ Sbjct: 40 RTLSRGATGSDVRELQIRVAGWVASGENLVIDGVYGAATEAAVKRFQSGYGLAADGVAGP 99 Query: 160 STLE 163 +T Sbjct: 100 NTFN 103 >gi|229820604|ref|YP_002882130.1| SCP-like extracellular [Beutenbergia cavernae DSM 12333] gi|229566517|gb|ACQ80368.1| SCP-like extracellular [Beutenbergia cavernae DSM 12333] Length = 349 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 LP L +G S V+RL+ L G + A+ + V FQ + GL G+ Sbjct: 187 LPPGWLGIGASGPDVERLQADLAALGH---DVAVDGAYGPRTSAGVSAFQQQAGLAVDGV 243 Query: 157 VDSSTLE 163 +TLE Sbjct: 244 AGPATLE 250 >gi|53717805|ref|YP_106791.1| putative phage-encoded peptidoglycan binding protein [Burkholderia pseudomallei K96243] gi|52208219|emb|CAH34150.1| putative phage-encoded peptidoglycan binding protein [Burkholderia pseudomallei K96243] Length = 270 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G S +S +D E AV+ Q GL G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---SLDVSHLYDEQTERAVQTLQATAGLVVDGIAGPKT 60 Query: 162 LEAM 165 + Sbjct: 61 YRVL 64 >gi|167567988|ref|ZP_02360904.1| bacteriophage-acquired protein [Burkholderia oklahomensis EO147] Length = 270 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AV+ Q GL G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDEQTERAVQTLQAAAGLVVDGIAGPKT 60 Query: 162 LEAM 165 + + Sbjct: 61 YKVL 64 >gi|119898071|ref|YP_933284.1| hypothetical protein azo1780 [Azoarcus sp. BH72] gi|119670484|emb|CAL94397.1| hypothetical protein azo1780 [Azoarcus sp. BH72] Length = 208 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK-----GLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L LG++ V+ L++RL+ + L P + F + AV +Q HGL P G+ Sbjct: 5 LKLGSTGDLVRLLQQRLVEAEALPPEDVQGHSNIDGQFGRITQDAVIGYQTAHGLTPDGL 64 Query: 157 VDSST 161 V T Sbjct: 65 VGHRT 69 >gi|317057187|ref|YP_004105654.1| spore cortex-lytic enzyme [Ruminococcus albus 7] gi|315449456|gb|ADU23020.1| spore cortex-lytic enzyme [Ruminococcus albus 7] Length = 225 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 3/94 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +G+ V+ ++E+L G ++ + +AVK FQ + G+ +G TL+ Sbjct: 39 IGSYGNEVRAIQEKLKERGLFK--ANVTGYYGEITRNAVKAFQKQQGITQTGTAGPITLK 96 Query: 164 AMNVPVDLRIRQLQVNLMRI-KKLLEQKMGLRYV 196 A+ + + + N+ + + + + G YV Sbjct: 97 ALGISIGTVPAATEANIDLLARIISAEARGEPYV 130 >gi|23097729|ref|NP_691195.1| cell wall associated protein [Oceanobacillus iheyensis HTE831] gi|22775953|dbj|BAC12230.1| cell wall associated protein (cell wall lytic activity) [Oceanobacillus iheyensis HTE831] Length = 276 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + + G+ S +V+ L+E L G + + F E AV+ +Q L G+V Sbjct: 63 SVGLIQRGDVSSAVEDLQEELQDQGYY--TYNIDGIFGPITEEAVREYQADQDLQVDGIV 120 Query: 158 DSSTLEAMNV 167 +T +A+ V Sbjct: 121 GPNTKDALAV 130 >gi|255307414|ref|ZP_05351585.1| putative peptidoglycan-binding/hydrolysing protein [Clostridium difficile ATCC 43255] Length = 103 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + + GNS V+ + L + G + G+ +F + +AV FQ ++GL G++ Sbjct: 30 TTKVIRKGNSGKEVKAAQIMLTLLGY---NVGIDSSFGSKTYNAVVSFQKKYGLSADGII 86 Query: 158 DSSTLEAM 165 +T + + Sbjct: 87 GPATWDKL 94 >gi|254385203|ref|ZP_05000535.1| lipoprotein [Streptomyces sp. Mg1] gi|194344080|gb|EDX25046.1| lipoprotein [Streptomyces sp. Mg1] Length = 292 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ S V+ L+ RL + + + + + +AVK FQ R+GL SG VD+ T + Sbjct: 90 GDDSEQVRELQARLKQLKLMSVAP--TGFYGSKTTTAVKSFQSRNGLTASGSVDAETWKK 147 Query: 165 MNV----PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 + P +R VN + + M R + ++ + +L + +GKV V Sbjct: 148 IQGLTKKPTADELRPPTVN--EVDAPDPRCMTGRVMCISKESRTLAWMIDGKVISTMDVR 205 Query: 221 VGRVDRQT 228 G + T Sbjct: 206 FGSENTPT 213 >gi|126700003|ref|YP_001088900.1| putative peptidoglycan-binding/hydrolysing protein [Clostridium difficile 630] gi|115251440|emb|CAJ69273.1| putative peptidoglycan-binding/hydrolysing protein [Clostridium difficile] Length = 200 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + + GNS V+ + L + G + G+ +F + +AV FQ ++GL G++ Sbjct: 127 TTKVIRKGNSGKEVKAAQIMLTLLGY---NVGIDSSFGSKTYNAVVSFQKKYGLSADGII 183 Query: 158 DSSTLEAM 165 +T + + Sbjct: 184 GPATWDKL 191 >gi|91792069|ref|YP_561720.1| ErfK/YbiS/YcfS/YnhG [Shewanella denitrificans OS217] gi|91714071|gb|ABE53997.1| ErfK/YbiS/YcfS/YnhG [Shewanella denitrificans OS217] Length = 304 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 53/175 (30%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGKVGLRS-TVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L GK + + +G++ + TP + + R NP W I +K Sbjct: 98 IVINVAEMRLYYYPKGKNIVEVLPIGIGQIGKDTPEKWVTTVQRKRANPTWTPTPRI-RK 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + +A EV G N M + Sbjct: 157 EYLAK--------------------GEVLPAVW--------------PAGPDNPMGLFAL 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 + H T F +R + GC+R+R+ L P +R Sbjct: 183 YIGNLYAI--HGTNAT--FGIGLR-ISQGCIRLRDAD--IEHLFNSVPEGTRVEF 230 >gi|168178160|ref|ZP_02612824.1| LycA [Clostridium botulinum NCTC 2916] gi|21702563|gb|AAM75963.1| LycA [Clostridium botulinum] gi|182671439|gb|EDT83413.1| LycA [Clostridium botulinum NCTC 2916] Length = 316 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++ LI G S G+ F +A+K FQ L G+V T Sbjct: 249 KQGARGGITKVIQQMLISIGYPVGSHGVDGVFGDSTVTAIKAFQRDCHLVADGIVGKETW 308 Query: 163 EAM 165 +A+ Sbjct: 309 KAL 311 >gi|296118595|ref|ZP_06837173.1| N-acetymuramyl-L-alanine amidase-related protein [Corynebacterium ammoniagenes DSM 20306] gi|295968494|gb|EFG81741.1| N-acetymuramyl-L-alanine amidase-related protein [Corynebacterium ammoniagenes DSM 20306] Length = 404 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 42/137 (30%), Gaps = 31/137 (22%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGL------------SVAFDAYVESAVKLFQMRH 149 L +G+ S V R L G L G FD+ + +K FQ Sbjct: 15 LQVGDRSARVAEARATLARLGMLSNYTGDVSDWKRQKFSEEDKHFDSELSDIIKAFQQSR 74 Query: 150 GLDPSGMVDSSTLEAM-----------------NVPVDLRIRQLQVNLMRIKKLLEQKMG 192 G+ PSG +D TL + N V + QLQ L + + + G Sbjct: 75 GIIPSGNIDDLTLRELRQASYKLGNRVLSYQPNNELVGDDVSQLQKQLQELGFYMARIDG 134 Query: 193 LRYVLVNIP--AASLEA 207 + L Sbjct: 135 HFGSFTHAALLEYQLNY 151 Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 40/93 (43%), Gaps = 5/93 (5%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V +L+++L G + F ++ +A+ +Q+ +GL G+ +T+ A+++ Sbjct: 112 GDDVSQLQKQLQELGFY--MARIDGHFGSFTHAALLEYQLNYGLQQDGVCGPATIRALSL 169 Query: 168 PVDLRIRQLQVNL---MRIKKLLEQKMGLRYVL 197 N+ R++ + G R V+ Sbjct: 170 LGRRITGGSAHNIQERERVRNAGPKLAGKRVVI 202 >gi|254425312|ref|ZP_05039030.1| ErfK/YbiS/YcfS/YnhG family [Synechococcus sp. PCC 7335] gi|196192801|gb|EDX87765.1| ErfK/YbiS/YcfS/YnhG family [Synechococcus sp. PCC 7335] Length = 189 Score = 54.5 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 52/162 (32%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 + ++++I + + ++ V VG + TPI + +++ NP W P Sbjct: 60 LANNRIVLSISDRRVYLFDGNELVNSYPVAVGTPETPTPIGEFAVTQLVVNPVWQSP--- 116 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 EV PG +A+ Sbjct: 117 --------------------------WTGEVR------------------SPGPNSALGL 132 Query: 311 TKIEFY-SRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 I F + ++ H TP ++ ++GCVR+ N Sbjct: 133 RWIGFTSNSEGSFGFHGTPTV---ESIGHAASNGCVRMHNAD 171 >gi|226948038|ref|YP_002803129.1| LycA [Clostridium botulinum A2 str. Kyoto] gi|40738374|gb|AAR89504.1| LycA [Clostridium botulinum A2 str. Kyoto] gi|226842291|gb|ACO84957.1| LycA [Clostridium botulinum A2 str. Kyoto] Length = 316 Score = 54.5 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++ LI G S G F +A+K FQ L G+V T Sbjct: 249 KQGARGGITKVIQQMLISIGYPVGSHGADGVFGDSTVTAIKAFQRDCHLVADGIVGKETW 308 Query: 163 EAM 165 +A+ Sbjct: 309 KAL 311 >gi|302558624|ref|ZP_07310966.1| peptidoglycan binding domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302476242|gb|EFL39335.1| peptidoglycan binding domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 223 Score = 54.5 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 8/74 (10%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 GGW + G V ++ + G + AVK FQ GL Sbjct: 92 GGWSRID-----PGARGRRVAAIQYLMTQRGY---GLTADGYYGPVSAGAVKRFQAARGL 143 Query: 152 DPSGMVDSSTLEAM 165 G V +T + Sbjct: 144 VADGQVGPATWPHL 157 Score = 43.3 bits (101), Expect = 0.069, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 9/85 (10%) Query: 86 QDILSRGG-----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 + +++ G WP L + L G++ V+ L+ L G F + S Sbjct: 141 RGLVADGQVGPATWPHL-VYTLRQGHAGHHVRALQTVLDKHG---AGLVADGGFGSVTAS 196 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAM 165 AV+ +Q + L G+ + T A+ Sbjct: 197 AVRAYQSVNRLVVDGVAGAVTWRAL 221 >gi|119490226|ref|ZP_01622739.1| prophage LambdaCh01, N-acetylmuramoyl-L-alanine amidase [Lyngbya sp. PCC 8106] gi|119454112|gb|EAW35265.1| prophage LambdaCh01, N-acetylmuramoyl-L-alanine amidase [Lyngbya sp. PCC 8106] Length = 367 Score = 54.5 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 7/81 (8%) Query: 92 GGWPELPI-RPLHLGNS---SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W P+ R L L V +++ L G L G FD + A+K FQ Sbjct: 288 GIWCHFPVPRVLRLKQKFIEGSDVIQVQTALKKLGYLVDQNG---VFDKKTDDAIKQFQQ 344 Query: 148 RHGLDPSGMVDSSTLEAMNVP 168 L G+V +T + V Sbjct: 345 EKNLTVDGVVGPATWAKLLVS 365 >gi|159043497|ref|YP_001532291.1| peptidoglycan-binding domain 1 protein [Dinoroseobacter shibae DFL 12] gi|157911257|gb|ABV92690.1| peptidoglycan-binding domain 1 protein [Dinoroseobacter shibae DFL 12] Length = 260 Score = 54.5 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 16/154 (10%) Query: 25 SLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDS-------DIPIISKETIAQ 77 S + + +D + + R L R+ ++ P Sbjct: 112 SAISNHSWGTAIDLTLEGKLDRRGDGRTQEGLLRIYKIFNAHGFFWGAAFPTEDAMHFEV 171 Query: 78 TEKAIAFYQDILSRGGWPELPI----RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 +E+ I + G + G+ V+ L++ L ++ L + A Sbjct: 172 SEQLI---RQWADEGKLSSGSAVFDNGLIDFGDRGRIVEDLQQALNLA--LGLDLDVDGA 226 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 F +AV FQ +GL G+V +T A+ + Sbjct: 227 FGPATRAAVMEFQRVNGLTVDGIVGPNTQAALGM 260 >gi|302390029|ref|YP_003825850.1| Peptidoglycan-binding domain 1 protein [Thermosediminibacter oceani DSM 16646] gi|302200657|gb|ADL08227.1| Peptidoglycan-binding domain 1 protein [Thermosediminibacter oceani DSM 16646] Length = 78 Score = 54.5 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G V L+ +L G + F E AV+ Q + + G+V Sbjct: 9 SRTLRRGMRGKDVAELQTKLQALGYY--MGPIDGIFGRLTEMAVRRLQRDNNIRVDGIVG 66 Query: 159 SSTLEAM 165 T + Sbjct: 67 PQTYAIL 73 >gi|239989830|ref|ZP_04710494.1| hypothetical protein SrosN1_21180 [Streptomyces roseosporus NRRL 11379] gi|291446846|ref|ZP_06586236.1| peptidoglycan-binding domain 1 protein [Streptomyces roseosporus NRRL 15998] gi|291349793|gb|EFE76697.1| peptidoglycan-binding domain 1 protein [Streptomyces roseosporus NRRL 15998] Length = 360 Score = 54.5 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 8/79 (10%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V++L L G + +AVK +Q H +G V Sbjct: 121 RTLKPGDKGRDVEQLERNLAELGY--TGFTPDQEYTELTAAAVKRWQKSHDAKQTGKVGP 178 Query: 160 S--TLEAMNVPVDLRIRQL 176 T P +RI+ + Sbjct: 179 GDVTFA----PGKVRIKSV 193 >gi|325921073|ref|ZP_08182950.1| putative peptidoglycan binding protein [Xanthomonas gardneri ATCC 19865] gi|325548461|gb|EGD19438.1| putative peptidoglycan binding protein [Xanthomonas gardneri ATCC 19865] Length = 1267 Score = 54.5 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 5/80 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L LG+ V+ L+ RL P + + E AV+ FQ GL +G+ Sbjct: 948 LRLGDRGREVEFLQYRLQQLDARGPNGQAVPQDGHYGPETEHAVRQFQQDQGLPATGIAG 1007 Query: 159 SSTLEAMNVPVDLRIRQLQV 178 A+ R++ + Sbjct: 1008 QELDAAL--SQAQHARRVSL 1025 >gi|282897905|ref|ZP_06305900.1| Peptidoglycan-binding domain protein 1 [Raphidiopsis brookii D9] gi|281197049|gb|EFA71950.1| Peptidoglycan-binding domain protein 1 [Raphidiopsis brookii D9] Length = 201 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P++P L G+S ++++ L+ LI +G + + F E+A+K FQ + L Sbjct: 133 PQMP--TLRFGDSGLAIRVLQRLLISNGY---NVRVDGVFGPLTETAIKAFQSQRDLSVD 187 Query: 155 GMVDSSTLEAM 165 G+V +T + Sbjct: 188 GIVGPNTWYQL 198 >gi|167464376|ref|ZP_02329465.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383048|ref|ZP_08056876.1| murein transglycosylase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152817|gb|EFX45442.1| murein transglycosylase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 230 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P RPL G+S + VQ ++ RL +G + + F E A+K F+ H L Sbjct: 156 GPPYEDPRPLAAGDSGIDVQLIQYRLKSAGYFNG--ICNGKFGPQTELALKRFEKDHDLP 213 Query: 153 PSGMVDSSTLEAM 165 G++ EA+ Sbjct: 214 IDGVMGRQDYEAL 226 >gi|186682010|ref|YP_001865206.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186464462|gb|ACC80263.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 449 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G + +V RL++RL G L+ + + F AV FQ + + +G+V+ T Sbjct: 114 LSQGKTGAAVTRLQQRLRQLGYLNANA--TGTFGPMTRDAVIKFQRNYRIAANGIVNRQT 171 Query: 162 LEAM 165 A+ Sbjct: 172 WNAL 175 Score = 45.2 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +G++ V + L G + +S F + ++AV FQ + + G+V +T Sbjct: 24 KIGSNGSEVTSSQRCLKKLGYFNG--PVSGKFASLTQNAVIKFQQANRIPADGVVGINTQ 81 Query: 163 EAM 165 +A+ Sbjct: 82 QAL 84 Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+ +V ++ERL G + F + V FQ L+ +G VD T Sbjct: 262 LTLGDRGDNVALVQERLSQLGF--SNTNPDGFFSDSTKETVIAFQQYSRLNVTGNVDWQT 319 Query: 162 LEAM 165 +A+ Sbjct: 320 WQAL 323 Score = 37.5 bits (86), Expect = 4.2, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 9/133 (6%) Query: 39 IINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ----DILSRGGW 94 ++++ R L ++ + T K Y+ I++R W Sbjct: 113 VLSQGKTGAAVTRLQQRLRQLGYLNANATGTFGPMTRDAVIKFQRNYRIAANGIVNRQTW 172 Query: 95 PELPIRPLHLGNSS---VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 L SS V+ L+ RL G + S + AV FQ + L Sbjct: 173 NALLGSSPTQTRSSLSTQQVRELQGRLQQLGYFNTSPTGKIG--PMTRDAVIKFQRNYRL 230 Query: 152 DPSGMVDSSTLEA 164 +G+ ++ L+A Sbjct: 231 PVNGIANAQVLDA 243 >gi|86148794|ref|ZP_01067062.1| putative general secretion pathway protein A [Vibrio sp. MED222] gi|85833413|gb|EAQ51603.1| putative general secretion pathway protein A [Vibrio sp. MED222] Length = 562 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 14/120 (11%) Query: 57 ARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRE 116 V++ ++ + ++ K T+ Q + Y I W + L G +V L Sbjct: 444 ESVELLVNEKLLVMPKRTLKQIWQG--DYVAI-----WKQPLRETLKEGYQGEAVALLDL 496 Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 ++S L S FD ++ ++ FQ G+ G+ TL + R+ QL Sbjct: 497 --LLSEVLGEDVSGSDVFDYELKMKIEAFQTWQGMSVDGIAGKRTLARL-----QRLAQL 549 >gi|308270260|emb|CBX26872.1| hypothetical protein N47_A09010 [uncultured Desulfobacterium sp.] Length = 440 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 72/205 (35%), Gaps = 46/205 (22%) Query: 189 QKMGLRYVLVNIPAASLEAVENGK---VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 + +++N+ A L + L V +G +R TP+ + R M P W Sbjct: 119 PDAPRKGIVINLAAMRLFQFKGNSNFLTVLTYPVGIGTSERPTPMGQMYVYRKMARPTWH 178 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 +P SI + + DP P+FI PG Sbjct: 179 VPASIAED---HRKKGDP-----------------------------LPSFIL---PGPE 203 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR 365 N + + S++ +H T +P T+GC+R+ D+ L K TP + Sbjct: 204 NPLGEYALYL-SKSGYLIHGTNKPSSIGLKA---TNGCIRL-YPEDI-KMLFKSTPVKTP 257 Query: 366 YHI--EEVVKTRKTTPVKLATEVPV 388 I + + ++ V L VP+ Sbjct: 258 VSIVNQPYLIGQRNGLVYLEAHVPL 282 >gi|332711683|ref|ZP_08431614.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332349661|gb|EGJ29270.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 542 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + LG+ V RL+ L G + + + + +AV FQ GL+ G+V Sbjct: 52 TVRLGSQGEVVTRLQTILQQLGYY--QQPVDGVYGSNTFAAVSTFQQALGLNADGIVGPI 109 Query: 161 TL 162 T Sbjct: 110 TW 111 >gi|295704030|ref|YP_003597105.1| putative peptidoglycan binding domain-containing protein [Bacillus megaterium DSM 319] gi|294801689|gb|ADF38755.1| putative peptidoglycan binding domain protein [Bacillus megaterium DSM 319] Length = 188 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ S V+ L++ L D+ + + F ++ VK FQ H L P G+V Sbjct: 48 TLRKGSHSSYVRDLQQSLK---DVKYNTSVDGIFGTQTQNVVKEFQTDHSLSPDGIVGPL 104 Query: 161 TLEAMNVPVDLRIR 174 T A++ R + Sbjct: 105 TWAALDENKVERKQ 118 >gi|294817680|ref|ZP_06776322.1| Peptidoglycan-binding domain 1 protein [Streptomyces clavuligerus ATCC 27064] gi|326446616|ref|ZP_08221350.1| peptidoglycan binding domain-containing protein [Streptomyces clavuligerus ATCC 27064] gi|294322495|gb|EFG04630.1| Peptidoglycan-binding domain 1 protein [Streptomyces clavuligerus ATCC 27064] Length = 345 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 45/142 (31%), Gaps = 25/142 (17%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L G +V L+ L G + + F + VK FQ L Sbjct: 62 WPV-----LRAGQKGANVSALQHLLNFRG---QTLTVDGDFGPTTTAKVKAFQQSQALTD 113 Query: 154 SGMVDSSTLEAMNVPVDL-------RIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 G+V + T A+ V R Q + Q + + + AA + Sbjct: 114 DGVVGADTWSALVTTVQSGSSGSAVRAAQTLLAAR------GQAVSVDGIFGADTAAKVR 167 Query: 207 AVENGKVGLRSTVIVGRVDRQT 228 A + G + G VD T Sbjct: 168 AFQQGA----GQAVTGVVDTTT 185 Score = 39.8 bits (92), Expect = 0.84, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 4/98 (4%) Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS 127 P + + A + ++ W L + + G+S +V+ + L G + Sbjct: 96 PTTTAKVKAFQQSQALTDDGVVGADTWSAL-VTTVQSGSSGSAVRAAQTLLAARG---QA 151 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F A + V+ FQ G +G+VD++T A+ Sbjct: 152 VSVDGIFGADTAAKVRAFQQGAGQAVTGVVDTTTWLAL 189 >gi|328553931|gb|AEB24423.1| bacteriophage SPbeta N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens TA208] Length = 385 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 7/77 (9%) Query: 96 ELPIRPLH---LGNSSVSVQRLRERLIISGDLDPSK----GLSVAFDAYVESAVKLFQMR 148 LP +V++++ L G+ A+ A AV+ FQ+ Sbjct: 304 SLPAGTFKVTSPLTRGEAVKQIQTALAALRYYPDKNAKNFGIDGAYGAKTAGAVRRFQLM 363 Query: 149 HGLDPSGMVDSSTLEAM 165 +GL G+ T + Sbjct: 364 NGLKADGIYGPKTKTKL 380 >gi|85859402|ref|YP_461604.1| erfK/srfK family protein [Syntrophus aciditrophicus SB] gi|85722493|gb|ABC77436.1| erfK/srfK family protein [Syntrophus aciditrophicus SB] Length = 445 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 44/162 (27%) Query: 189 QKMGLRYVLVNIPAASLEAVE-NGK--VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 + +++N+ A L + +GK V +G +R TP+ + R P W Sbjct: 126 PDAPRKGIVINLAAMRLFQFKGDGKFLTVSTYPVGIGSEERPTPMGQMYVQRKTARPTWH 185 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 +P SI +D+ K ++ +V PG Sbjct: 186 VPASIA---------------EDH------RKKGDILPAKV--------------PPGPD 210 Query: 306 NAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 N + + + + Y +H T +P T+GC+R+ Sbjct: 211 NPLGEYALYLSNPS--YLIHGTNKPASIGLNA---TNGCIRL 247 >gi|302207202|gb|ADL11544.1| N-Acetymuramyl-L-Alanine Amidase [Corynebacterium pseudotuberculosis C231] Length = 398 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 24/174 (13%) Query: 44 YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL- 102 +V D D + + +D E +A+ K + + I++ G E+ +R L Sbjct: 28 RLGLVPDS-DKEIKQSKGQTFTDPETYFDEDLAEVIKGMQQARGIIASGEINEVTLRALR 86 Query: 103 ----HLGNS-----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 LG V +L+ +L G + + F A+ +Q+ Sbjct: 87 EASYKLGARVLSFEPNNIFVGDDVVQLQTQLQELGFY--TDRVDGRFGENTYKALLSYQV 144 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIR----QLQVNLMRIKKLLEQKMGLRYVL 197 +GL G+ T+ A + RI Q R++ G R V+ Sbjct: 145 NYGLKSDGVCGPETIRAFGR-LGRRITGGSPQALRERERVRDAGPMLAGKRVVI 197 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 12/76 (15%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK------------GLSVAFDAYVESAVKLFQMRH 149 L +G+ S V +R L G + S FD + +K Q Sbjct: 10 LRVGDHSPRVAEVRTALTRLGLVPDSDKEIKQSKGQTFTDPETYFDEDLAEVIKGMQQAR 69 Query: 150 GLDPSGMVDSSTLEAM 165 G+ SG ++ TL A+ Sbjct: 70 GIIASGEINEVTLRAL 85 >gi|52082056|ref|YP_080847.1| peptidase S41A, C-terminal protease [Bacillus licheniformis ATCC 14580] gi|52787445|ref|YP_093274.1| YvjB [Bacillus licheniformis ATCC 14580] gi|319647922|ref|ZP_08002140.1| YvjB protein [Bacillus sp. BT1B_CT2] gi|52005267|gb|AAU25209.1| Peptidase S41A, C-terminal protease [Bacillus licheniformis ATCC 14580] gi|52349947|gb|AAU42581.1| YvjB [Bacillus licheniformis ATCC 14580] gi|317390263|gb|EFV71072.1| YvjB protein [Bacillus sp. BT1B_CT2] Length = 479 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 57/163 (34%), Gaps = 30/163 (18%) Query: 38 EIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA-------IAFYQDILS 90 +I + + ++ L + P K T+ Q + Y+ + Sbjct: 298 SVITDKGSASASEILAGALKEAEGYDVVGDPSFGKGTVQQAVPMGDGSNIKLTLYKWLTP 357 Query: 91 RGGW-------PELPI--------------RPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 +G W P +P+ PL ++ ++R + L G + + Sbjct: 358 KGNWIHKQGIQPTVPVTQPAYFSAGPLQLKEPLKPDMNNNEIKRAQFLLKGLGFVPGRED 417 Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 ++ + AV FQ + L +G++D T MN+ ++ + Sbjct: 418 G--YYNESTKKAVMAFQAANKLKQTGIIDQKTANTMNLRIEEK 458 >gi|329934815|ref|ZP_08284856.1| peptidoglycan-binding membrane protein [Streptomyces griseoaurantiacus M045] gi|329305637|gb|EGG49493.1| peptidoglycan-binding membrane protein [Streptomyces griseoaurantiacus M045] Length = 391 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 12/70 (17%) Query: 102 LHLGNSSVSVQ----RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--G 155 L G+ V+ RLR+RL G + +D VE+AV +Q G+ G Sbjct: 321 LRRGDDGPEVEELQRRLRQRLFYLG------TVDGTYDGDVETAVAAYQSARGITDDPRG 374 Query: 156 MVDSSTLEAM 165 + +T + Sbjct: 375 VYGEATRARL 384 >gi|304393047|ref|ZP_07374976.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] gi|303294812|gb|EFL89183.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] Length = 182 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G V+RL+E+L + D D F + AV FQ +GL G+ T Sbjct: 4 LKKGMKGAPVKRLQEKLGVGADGD--------FGPGTQKAVMDFQKANGLSVDGIAGPDT 55 Query: 162 LEAM 165 AM Sbjct: 56 FTAM 59 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 8/64 (12%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ V++L+ L S D F + + AV +Q +GL GM ST Sbjct: 67 LRVGSRGEQVKKLQAALGASAD--------GIFGSGTKQAVMDYQKANGLAVDGMAGPST 118 Query: 162 LEAM 165 L M Sbjct: 119 LATM 122 >gi|295104692|emb|CBL02236.1| Putative peptidoglycan-binding domain-containing protein [Faecalibacterium prausnitzii SL3/3] Length = 870 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 6/80 (7%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLF 145 LS G W L G S +V++++ L D PS + + +AV+ F Sbjct: 413 LSNGTW---NGTVLSTGASGSAVEQVQFWLNTLAQYDSAIPSVTVDGVYGTATANAVRAF 469 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q ++GL G+V +T + + Sbjct: 470 QRKYGLTVDGIVGQTTWKEL 489 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 21/159 (13%) Query: 32 HASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQT--EKAIAFYQDIL 89 + + V+ +F A + + + +T +K Y DI Sbjct: 526 WLKIARTVYTSLESVTVDGKFGAGTAAAVRRFQRYFGLTADGVVGRTTWQKLYEVYNDIA 585 Query: 90 SR--------GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYV 138 +R G +P + L G++ V+ L+ L + + P + F A Sbjct: 586 NRLLSSSLRPGEYPGV----LRSGSTGTPVRELQFYLYLMSAYESSIPPVSIDGKFGADT 641 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 E AV+ +Q GL G+V +T ++ R QL+ Sbjct: 642 ERAVRAYQQFAGLTVDGVVGRTTWNSL----YGRASQLR 676 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P PL G+ +V L+ +L I+ D + F + + + V+ FQ + L Sbjct: 319 PGTPLRQGSRGTAVFTLQRQLNRIAKDYPFLGKLTVDGVFGSRMAATVRAFQKQFNLTAD 378 Query: 155 GMVDSSTLE 163 G+V T Sbjct: 379 GVVGRQTWY 387 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 98 PIRPLHLGNSSVSVQRL-----RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P PL G S +V+ + R + + S + F A +AV+ FQ GL Sbjct: 507 PGTPLREGASGQNVRLVQFWLKIARTVYTSL--ESVTVDGKFGAGTAAAVRRFQRYFGLT 564 Query: 153 PSGMVDSSTLEAM 165 G+V +T + + Sbjct: 565 ADGVVGRTTWQKL 577 >gi|300859519|ref|YP_003784502.1| putative hydrolase [Corynebacterium pseudotuberculosis FRC41] gi|300686973|gb|ADK29895.1| putative hydrolase [Corynebacterium pseudotuberculosis FRC41] gi|302331763|gb|ADL21957.1| N-Acetymuramyl-L-Alanine Amidase [Corynebacterium pseudotuberculosis 1002] gi|308277455|gb|ADO27354.1| N-Acetymuramyl-L-Alanine Amidase [Corynebacterium pseudotuberculosis I19] Length = 393 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 24/174 (13%) Query: 44 YHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL- 102 +V D D + + +D E +A+ K + + I++ G E+ +R L Sbjct: 23 RLGLVPDS-DKEIKQSKGQTFTDPETYFDEDLAEVIKGMQQARGIIASGEINEVTLRALR 81 Query: 103 ----HLGNS-----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 LG V +L+ +L G + + F A+ +Q+ Sbjct: 82 EASYKLGARVLSFEPNNIFVGDDVVQLQTQLQELGFY--TDRVDGRFGENTYKALLSYQV 139 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIR----QLQVNLMRIKKLLEQKMGLRYVL 197 +GL G+ T+ A + RI Q R++ G R V+ Sbjct: 140 NYGLKSDGVCGPETIRAFGR-LGRRITGGSPQALRERERVRDAGPMLAGKRVVI 192 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 12/76 (15%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK------------GLSVAFDAYVESAVKLFQMRH 149 L +G+ S V +R L G + S FD + +K Q Sbjct: 5 LRVGDHSPRVAEVRTALTRLGLVPDSDKEIKQSKGQTFTDPETYFDEDLAEVIKGMQQAR 64 Query: 150 GLDPSGMVDSSTLEAM 165 G+ SG ++ TL A+ Sbjct: 65 GIIASGEINEVTLRAL 80 >gi|326778411|ref|ZP_08237676.1| Peptidase M23 [Streptomyces cf. griseus XylebKG-1] gi|326658744|gb|EGE43590.1| Peptidase M23 [Streptomyces cf. griseus XylebKG-1] Length = 340 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 24/109 (22%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + + GGW + G S +V ++ + G + ++ + AVK F Sbjct: 203 RGVDLSGGWSRID-----PGASGATVVVIQHLMNQRGH---GLAVDGSYGSLSVGAVKRF 254 Query: 146 QMRHGLDPSGMVDSST----------------LEAMNVPVDLRIRQLQV 178 Q GL G V +T + A+ ++ R +L V Sbjct: 255 QRSAGLAADGQVGPATWPVLVYTLRQGASGSPVRALQTALNRRGARLAV 303 Score = 45.6 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 12/93 (12%) Query: 81 AIAFYQD---ILSRGG-----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 A+ +Q + + G WP L + L G S V+ L+ L G + Sbjct: 250 AVKRFQRSAGLAADGQVGPATWPVL-VYTLRQGASGSPVRALQTALNRRG---ARLAVDG 305 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F + SAV+ +Q + L G T A+ Sbjct: 306 GFGSVTTSAVRAYQSGNRLVTDGEAGPVTWRAL 338 >gi|239943377|ref|ZP_04695314.1| hypothetical protein SrosN15_20443 [Streptomyces roseosporus NRRL 15998] Length = 354 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 8/79 (10%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V++L L G + +AVK +Q H +G V Sbjct: 115 RTLKPGDKGRDVEQLERNLAELGY--TGFTPDQEYTELTAAAVKRWQKSHDAKQTGKVGP 172 Query: 160 S--TLEAMNVPVDLRIRQL 176 T P +RI+ + Sbjct: 173 GDVTFA----PGKVRIKSV 187 >gi|254413016|ref|ZP_05026788.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180180|gb|EDX75172.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] Length = 417 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL +G+ +VQ L+ RL G + + AV FQ L+ G+V + Sbjct: 37 PLQVGSRGETVQALQTRLKKLGYYEG--DTDGVYGDTTRLAVIEFQESIDLNADGVVGLT 94 Query: 161 TLEAMNVPVDL 171 T + Sbjct: 95 TWTKLQAAAAE 105 >gi|320197861|gb|EFW72469.1| L,D-transpeptidase YnhG [Escherichia coli EC4100B] Length = 334 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSVP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|186684767|ref|YP_001867963.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186467219|gb|ACC83020.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 380 Score = 54.1 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 4/72 (5%) Query: 96 ELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 + P L G+ VQRL+ +L G + + ++ E AV FQ GL Sbjct: 44 TVTASPAVLRYGSRKSDVQRLQTQLKQLGYYNGV--VDGQYNPSTEIAVAEFQKAKGLKV 101 Query: 154 SGMVDSSTLEAM 165 G+ +T + Sbjct: 102 DGLAGLATRRRL 113 >gi|209523125|ref|ZP_03271681.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] gi|209496276|gb|EDZ96575.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] Length = 286 Score = 54.1 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 19/107 (17%) Query: 76 AQTEKAIAFYQ--------DILSRGGWPELPIRP---------LHLGNSSVSVQRLRERL 118 +TE+++ +Q ++ R W L P + G+ V+ L+ RL Sbjct: 177 PRTERSLIQFQLAKGLRPTGVVDRSTWQALSKDPHQQTIAETLIKQGDRGSKVRTLQTRL 236 Query: 119 IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++G + F SAV FQ+ GL+ +G+VD T + + Sbjct: 237 ELTG--HDPGPVDGIFGPKTLSAVSDFQLAMGLEATGVVDEKTWKVL 281 Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G V L++RL + G + F E ++ FQ+ GL P+G+VD S Sbjct: 144 TLARGTEGAQVAGLQQRLEVHGF--SVGRIDSLFGPRTERSLIQFQLAKGLRPTGVVDRS 201 Query: 161 TLEAMNVPV 169 T +A++ Sbjct: 202 TWQALSKDP 210 >gi|292490724|ref|YP_003526163.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosococcus halophilus Nc4] gi|291579319|gb|ADE13776.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosococcus halophilus Nc4] Length = 322 Score = 54.1 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 58/205 (28%), Gaps = 50/205 (24%) Query: 192 GLRYVLVNIPAASLEAVENGK-----VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 R +++N+ L + V + + +GR TP+ + + NP W+ Sbjct: 103 PRRGIVINLAEMRLYYFPESQPGQPGVVVTHPIGIGREGWSTPLGKTSVISKKKNPTWIP 162 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SI + + PG N Sbjct: 163 PESIRAE-----------------------------------HEANGDPLPKVVPPGSDN 187 Query: 307 AMAST--KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWS 364 + ++ H T P +R + GC+R+ D+ + S Sbjct: 188 PLGKFALRLGMP-GYLI--HGTNRPW--GVGMR-VSHGCIRL-YPEDIASLFAQVKVGAS 240 Query: 365 RYHIEEVVKTR-KTTPVKLATEVPV 388 + + K K + L VP+ Sbjct: 241 VNIVYQPFKAGIKDAVLYLEAHVPL 265 >gi|87302385|ref|ZP_01085210.1| Putative peptidoglycan binding domain 1 [Synechococcus sp. WH 5701] gi|87283310|gb|EAQ75266.1| Putative peptidoglycan binding domain 1 [Synechococcus sp. WH 5701] Length = 586 Score = 54.1 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+S V L+ L +G + S F E+AV FQ GL G+ T Sbjct: 3 LRRGDSGDRVSSLQTSLKKAGFDPGAIDGS--FGPGTEAAVIAFQKSEGLFADGIAGVET 60 Query: 162 LEAM 165 L A+ Sbjct: 61 LGAL 64 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G S V RL+ L + L P+ F E V FQ G+ G+ + Sbjct: 511 LTRGMMSTEVGRLQLMLRKALSLTPADLPADSQFGPNTERRVSEFQKAKGIPADGIAGPA 570 Query: 161 TLEAM 165 T++A+ Sbjct: 571 TIKAL 575 >gi|87303205|ref|ZP_01086003.1| putative bacteriophage lysozyme [Synechococcus sp. WH 5701] gi|87282372|gb|EAQ74332.1| putative bacteriophage lysozyme [Synechococcus sp. WH 5701] Length = 171 Score = 54.1 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G SV +L+ L + G+ S + F + E AVK FQ + GL G+V T Sbjct: 107 LVVGEKGESVVKLQTSLNLHGE---SIQIDGIFGPHTEDAVKRFQAKSGLVSDGIVGPRT 163 Query: 162 LEAM 165 E + Sbjct: 164 WEKL 167 >gi|325289079|ref|YP_004265260.1| gamma-D-glutamyl-{L}-meso-diaminopimelate peptidase I [Syntrophobotulus glycolicus DSM 8271] gi|324964480|gb|ADY55259.1| gamma-D-glutamyl-{L}-meso-diaminopimelate peptidase I [Syntrophobotulus glycolicus DSM 8271] Length = 424 Score = 54.1 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G V ++ L G + F E AV+ FQ GL G+V T Sbjct: 2 LKVGLRGNDVAEVQALLKQRGF--DPGPVDGIFGTKTEQAVRRFQNARGLSADGIVGPLT 59 Query: 162 LEAM 165 +A+ Sbjct: 60 YQAL 63 >gi|307328741|ref|ZP_07607913.1| Peptidoglycan-binding domain 1 protein [Streptomyces violaceusniger Tu 4113] gi|306885690|gb|EFN16704.1| Peptidoglycan-binding domain 1 protein [Streptomyces violaceusniger Tu 4113] Length = 350 Score = 54.1 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 6/75 (8%) Query: 95 PELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P P P L G+S V L++RL + +D V V +Q +H + Sbjct: 271 PPGPTGPPALREGDSGPEVAELQKRLSQLLLYIGAADGD--YDGGVRRVVSSYQDQHDIT 328 Query: 153 --PSGMVDSSTLEAM 165 P G+ +T + Sbjct: 329 GDPDGVYGENTRRDL 343 >gi|307824556|ref|ZP_07654781.1| Peptidoglycan-binding domain 1 protein [Methylobacter tundripaludum SV96] gi|307734540|gb|EFO05392.1| Peptidoglycan-binding domain 1 protein [Methylobacter tundripaludum SV96] Length = 553 Score = 54.1 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 7/81 (8%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + + +S SV LR L + +D + + V FQ +H L Sbjct: 467 PTPDGKVIRPRETSESVLWLRHLLNSIDRKTEAVEQPRFYDDRLVARVMDFQHQHQLPED 526 Query: 155 GMVDSSTL-------EAMNVP 168 G V T+ +A+N+P Sbjct: 527 GKVGEKTMFHLKNIAQALNLP 547 >gi|303240113|ref|ZP_07326634.1| spore cortex-lytic enzyme [Acetivibrio cellulolyticus CD2] gi|302592382|gb|EFL62109.1| spore cortex-lytic enzyme [Acetivibrio cellulolyticus CD2] Length = 231 Score = 54.1 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G + V ++++RL G D S +S +D AV+ FQM + L +G+ + Sbjct: 32 AEKLAPGMENDDVMKVQQRLKNWGYYDGS--ISGNYDLNTFLAVRDFQMTYKLPANGIAE 89 Query: 159 SSTLEAMNVP 168 TLE+M + Sbjct: 90 EKTLESMGLT 99 >gi|323169990|gb|EFZ55646.1| lysM domain protein [Escherichia coli LT-68] Length = 339 Score = 54.1 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 57/177 (32%), Gaps = 45/177 (25%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVG-----RVDRQTPILHSRINRIM 239 LL + ++VN+ L G+ + + +G +TP++ +R+ + + Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPGLETPVMETRVGQKI 147 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W I Q+ + + I + Sbjct: 148 PNPTWTPTAGIRQRSL------------ERGIKL-----------------------PPV 172 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 G N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 VPAGPNNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 226 >gi|163751936|ref|ZP_02159148.1| general secretion pathway protein a [Shewanella benthica KT99] gi|161328152|gb|EDP99318.1| general secretion pathway protein a [Shewanella benthica KT99] Length = 542 Score = 54.1 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 4/75 (5%) Query: 94 WPELPIRPLHLGN--SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W +P +G +S +Q L L + L FDA +E + FQ HGL Sbjct: 453 WQAPISQPREIGQGSNSEQIQWLENSLAQID--HRAPRLVDGFDAKLEDKLMRFQREHGL 510 Query: 152 DPSGMVDSSTLEAMN 166 + S TL +N Sbjct: 511 RADAIAGSQTLVQLN 525 >gi|326502188|dbj|BAJ98922.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 365 Score = 54.1 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 H G+ + RL++ L G L P + FDA +E+A++ +Q GL+ +G +D++T Sbjct: 56 HFGDERQGLARLKDYLSRFGYLPAPPAKFNDMFDADMETAIRTYQHNFGLEATGQLDAAT 115 Query: 162 LEAM 165 + M Sbjct: 116 VAKM 119 >gi|326488589|dbj|BAJ93963.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326534164|dbj|BAJ89432.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 365 Score = 54.1 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 H G+ + RL++ L G L P + FDA +E+A++ +Q GL+ +G +D++T Sbjct: 56 HFGDERQGLARLKDYLSRFGYLPAPPAKFNDMFDADMETAIRTYQHNFGLEATGQLDAAT 115 Query: 162 LEAM 165 + M Sbjct: 116 VAKM 119 >gi|294498738|ref|YP_003562438.1| L-alanyl-D-glutamate peptidase [Bacillus megaterium QM B1551] gi|294348675|gb|ADE69004.1| L-alanyl-D-glutamate peptidase [Bacillus megaterium QM B1551] Length = 231 Score = 54.1 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G VQ ++ LI G S G F + AVK FQ L G+V T Sbjct: 160 IEYGGRGNHVQLIQRMLIHLGY-SLSGGADGIFGSSTLKAVKAFQQALYLQVDGIVGPKT 218 Query: 162 LEAM 165 LE + Sbjct: 219 LEKL 222 >gi|282900696|ref|ZP_06308638.1| Peptidoglycan-binding domain protein 1 [Cylindrospermopsis raciborskii CS-505] gi|281194496|gb|EFA69451.1| Peptidoglycan-binding domain protein 1 [Cylindrospermopsis raciborskii CS-505] Length = 208 Score = 54.1 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P++P L G+S +S++ L+ LI +G + + F A E+A+K FQ + L Sbjct: 140 PQMP--TLRFGDSGLSIRVLQRLLISNGY---NVRVDGVFGALTETAIKAFQSQRNLSVD 194 Query: 155 GMVDSSTLEAM 165 G+V T + Sbjct: 195 GIVGPKTWSQL 205 >gi|127511942|ref|YP_001093139.1| peptidoglycan binding domain-containing protein [Shewanella loihica PV-4] gi|126637237|gb|ABO22880.1| Peptidoglycan-binding domain 1 protein [Shewanella loihica PV-4] Length = 587 Score = 54.1 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 94 WPELPIRPLHLG--NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W +P +G ++ +Q L L + L FDA +E ++ FQ +HGL Sbjct: 488 WQAPSYQPKEIGRGSAPAQIQWLENALAQIQ--NKPARLVDYFDAELEQSLMDFQRQHGL 545 Query: 152 DPSGMVDSSTLEAMN 166 + S TL +N Sbjct: 546 RADAIAGSQTLVQLN 560 >gi|114567403|ref|YP_754557.1| ErfK/YbiS/YcfS/YnhG [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338338|gb|ABI69186.1| ErfK/YbiS/YcfS/YnhG [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 332 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 28/174 (16%) Query: 89 LSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 + R +P L PL G S V ++ RL G S ++ ++LFQ+ Sbjct: 51 IDRTDFPSLFLAEPLLEGES---VWLVQARLKELGY---DIQPSGIYNLPTSQIIRLFQV 104 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA 207 GL+ +G+V+ EA+ ++ + K G + +++ + L Sbjct: 105 ASGLEENGVVNRPVWEALLFSDAGEPC--------LQGDSQDKRGRLLIEIDVASRKLVL 156 Query: 208 VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW-----------VIPRSI 250 E+GK+ V VG+ TP+ ++ N W +P I Sbjct: 157 TEDGKLVKEYPVAVGKSKTPTPLGEWKVVHKGLN--WGNGFGTRWMGLNVPWGI 208 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 6/84 (7%) Query: 87 DILSRGGWPELPIRP--LHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVK 143 I+ G ++P L +S V ++ RL G + D + G + E AVK Sbjct: 250 RIVENGKMFPQDLKPVLLKKNSSGQRVVYVQSRLKELGLEFDRADG---RYGNMTELAVK 306 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNV 167 FQ GL+ +G +D +T AM + Sbjct: 307 YFQAWRGLEATGEMDEATYRAMGM 330 >gi|291571162|dbj|BAI93434.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 303 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 19/107 (17%) Query: 76 AQTEKAIAFYQ--------DILSRGGWPELPIRP---------LHLGNSSVSVQRLRERL 118 +TE+A+ +Q ++ R W L P + G+ V+ L+ RL Sbjct: 194 PRTERALINFQLSKGLRPTGVVDRSTWQALSKDPHQQTIAETLIKQGDRGSKVKTLQTRL 253 Query: 119 IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++G + F +AV FQ+ GL+ +G+VD T + + Sbjct: 254 ELTG--HDPGPVDGIFGPKTLAAVSDFQLAMGLESTGVVDDKTWKVL 298 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G V V L++RL + G + F E A+ FQ+ GL P+G+VD S Sbjct: 161 TLARGTQGVQVAGLQQRLEVHGF--SVGRVDSLFGPRTERALINFQLSKGLRPTGVVDRS 218 Query: 161 TLEAMNVPV 169 T +A++ Sbjct: 219 TWQALSKDP 227 >gi|282864837|ref|ZP_06273891.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Streptomyces sp. ACTE] gi|282560262|gb|EFB65810.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Streptomyces sp. ACTE] Length = 517 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 7/79 (8%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 +LS G P+ L G S +V+RL+ L + L + + F ++AV+ +Q Sbjct: 442 ALLSAGTTPQ-----LSQGASGDAVKRLQRALTAA--LGATLAVDGTFGPATDTAVRGYQ 494 Query: 147 MRHGLDPSGMVDSSTLEAM 165 GL G V T A+ Sbjct: 495 KARGLTVDGHVGPDTWAAL 513 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G++ V+ +++ L G + + F +SAV+ FQ GL G V + T Sbjct: 383 KTGSAGAQVKAVQQLLHDQGYEPGA--VDGLFGTATKSAVQAFQTTRGLPADGTVGARTW 440 Query: 163 EAM 165 A+ Sbjct: 441 TAL 443 >gi|320007688|gb|ADW02538.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Streptomyces flavogriseus ATCC 33331] Length = 513 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G++ V+ ++ L G + F +AV+ FQ GLD G V T Sbjct: 379 KSGSTGSQVKAVQTLLNQQGY--RAGTEDGVFGTATGNAVRAFQTERGLDADGTVGPKTW 436 Query: 163 EAM 165 A+ Sbjct: 437 TAL 439 Score = 46.4 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 7/79 (8%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 +LS G P L G S +V+RL+ L + L + AF + AV+ +Q Sbjct: 438 ALLSAGTTPALDT-----GASGDAVKRLQRALTAA--LGRTVAADGAFGTNTDKAVRDYQ 490 Query: 147 MRHGLDPSGMVDSSTLEAM 165 L G V + T A+ Sbjct: 491 SSRNLAVDGSVGTGTWAAL 509 >gi|119900262|ref|YP_935475.1| hypothetical protein azo3973 [Azoarcus sp. BH72] gi|119672675|emb|CAL96589.1| hypothetical protein azo3973 [Azoarcus sp. BH72] Length = 267 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S +V+RL+ RL+ G + F E+AV +Q GL P G+ T Sbjct: 4 LKRGASGAAVERLQRRLLECGF--DPGLIDGLFGGGSEAAVLAYQWSEGLLPDGIAGPRT 61 Query: 162 LEAM 165 L+++ Sbjct: 62 LKSL 65 >gi|117164603|emb|CAJ88149.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces ambofaciens ATCC 23877] Length = 244 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+S V +L+ R+ + A +AVK FQ +GL G+ S Sbjct: 40 RTLSEGSSGSDVTQLQIRVAGWVTSGERLSYDGQYGARTAAAVKKFQAAYGLSADGVAGS 99 Query: 160 ST 161 +T Sbjct: 100 AT 101 >gi|330466015|ref|YP_004403758.1| peptidase M15A [Verrucosispora maris AB-18-032] gi|328808986|gb|AEB43158.1| peptidase M15A [Verrucosispora maris AB-18-032] Length = 262 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 25/66 (37%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G S V+ L+ R+ L + +AV+ FQ +GL G+ Sbjct: 41 RTLSQGRSGSDVRELQLRVAGWAGNRDIVELDGRYGPKTAAAVRRFQSAYGLTADGIAGP 100 Query: 160 STLEAM 165 T + Sbjct: 101 QTFAKL 106 >gi|300864980|ref|ZP_07109811.1| Glycoside hydrolase family 25 [Oscillatoria sp. PCC 6506] gi|300337015|emb|CBN54961.1| Glycoside hydrolase family 25 [Oscillatoria sp. PCC 6506] Length = 440 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ + VQ +++ L G + + + +SA FQ GL+ G+V Sbjct: 190 SLREGSPAPKVQEIQKHLKNKGFYQGTIDGN--YSTSTKSAAIAFQKSQGLEADGIVGLK 247 Query: 161 TLEAM 165 TL A+ Sbjct: 248 TLTAL 252 >gi|255527303|ref|ZP_05394182.1| spore cortex-lytic enzyme [Clostridium carboxidivorans P7] gi|296185714|ref|ZP_06854123.1| spore cortex-lytic enzyme [Clostridium carboxidivorans P7] gi|255508993|gb|EET85354.1| spore cortex-lytic enzyme [Clostridium carboxidivorans P7] gi|296049842|gb|EFG89267.1| spore cortex-lytic enzyme [Clostridium carboxidivorans P7] Length = 235 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ V +++ +L S + + +AVK FQ ++GL G+V STL+ Sbjct: 43 YGSKGGVVSQIQSKLKAWYYYSGS--VDGVYGYGTFTAVKKFQAKNGLKVDGVVGDSTLQ 100 Query: 164 AMNV 167 A+ + Sbjct: 101 ALGI 104 >gi|302563365|ref|NP_001180685.1| matrix metallopeptidase 23A (pseudogene) [Macaca mulatta] Length = 569 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 46/135 (34%), Gaps = 29/135 (21%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL 102 + + + ++ D P+ + IA A Q LSR GW L Sbjct: 15 WLAAPWSTQPESLFHSRDRSDLEPSPLRQAKPIADLHAA----QRFLSRYGWSGLRA--- 67 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + A + +AV+ FQ + L SG +D++TL Sbjct: 68 -----------------AWGPSSEGPPETPE-GAALAAAVRRFQRANALPASGELDAATL 109 Query: 163 EAMNVP----VDLRI 173 AMN P D R+ Sbjct: 110 AAMNRPRCGVPDTRL 124 >gi|332835329|ref|XP_003312866.1| PREDICTED: LOW QUALITY PROTEIN: matrix metalloproteinase-21-like [Pan troglodytes] Length = 569 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 41/126 (32%), Gaps = 25/126 (19%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL 102 + + +N D P+ + IA A Q LSR GW + Sbjct: 15 WLAAPWPTQPENLFHSRDRSDLEPSPLRQAKPIADLHAA----QRFLSRYGWSGVWA--- 67 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + A + AV+ FQ + L SG +D++TL Sbjct: 68 -----------------AWGPSPEGPPETPK-GAALAEAVRRFQRANALPASGELDAATL 109 Query: 163 EAMNVP 168 AMN P Sbjct: 110 AAMNRP 115 >gi|302553494|ref|ZP_07305836.1| predicted protein [Streptomyces viridochromogenes DSM 40736] gi|302471112|gb|EFL34205.1| predicted protein [Streptomyces viridochromogenes DSM 40736] Length = 253 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GN+ V ++ +L G +P + AV FQ HGL G+V T +A Sbjct: 56 GNAGPCVADVQSKLNQLG-ANPQLDVDGIAGRQTYQAVITFQRSHGLTADGVVGPLTKQA 114 Query: 165 M 165 + Sbjct: 115 I 115 >gi|321312058|ref|YP_004204345.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis BSn5] gi|320018332|gb|ADV93318.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis BSn5] Length = 250 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 7/77 (9%) Query: 96 ELPIRPLHLGN---SSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMR 148 LP + L + ++ +L++ L + G+ + +AVK FQ+ Sbjct: 169 PLPSGVIKLTSPYRKGTNILQLQKALAALHFYPDKGAKNNGIDGVYGPKTANAVKRFQLM 228 Query: 149 HGLDPSGMVDSSTLEAM 165 +GL G+ T + Sbjct: 229 NGLTADGIYGPKTKAKL 245 >gi|194017081|ref|ZP_03055693.1| N-acetylmuramoyl-L-alanine amidase CwlA (Cellwall hydrolase) (Autolysin) [Bacillus pumilus ATCC 7061] gi|194010949|gb|EDW20519.1| N-acetylmuramoyl-L-alanine amidase CwlA (Cellwall hydrolase) (Autolysin) [Bacillus pumilus ATCC 7061] Length = 273 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDP-SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 PL G++ +Q L D + G+ + +AVK FQ+ HGL G+ Sbjct: 203 PLMKGDAVKQIQEAIAALYFYPDKGAKNNGIDGYYGPKTANAVKRFQLMHGLAADGIYGP 262 Query: 160 STLEAM 165 T + Sbjct: 263 KTKAKL 268 >gi|16079624|ref|NP_390448.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|221310497|ref|ZP_03592344.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|221314821|ref|ZP_03596626.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319743|ref|ZP_03601037.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. JH642] gi|221324021|ref|ZP_03605315.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. SMY] gi|1730978|sp|P54450|CWLH_BACSU RecName: Full=N-acetylmuramoyl-L-alanine amidase CwlH; AltName: Full=Autolysin; AltName: Full=Cell wall hydrolase; Flags: Precursor gi|1303785|dbj|BAA12441.1| YqeE [Bacillus subtilis] gi|2635016|emb|CAB14512.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] Length = 250 Score = 53.7 bits (128), Expect = 5e-05, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 7/77 (9%) Query: 96 ELPIRPLHLGN---SSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMR 148 LP + L + ++ +L++ L + + G+ + +AVK FQ+ Sbjct: 169 PLPSGVIKLTSPYRKGTNILQLQKALAVLHFYPDKGAKNNGIDGVYGPKTANAVKRFQLM 228 Query: 149 HGLDPSGMVDSSTLEAM 165 +GL G+ T + Sbjct: 229 NGLTADGIYGPKTKAKL 245 >gi|302556454|ref|ZP_07308796.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302474072|gb|EFL37165.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length = 113 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 95 PELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 PE+P L G++ V L+ RL+ + ++ +D V AV FQ +G+ Sbjct: 35 PEIPGTGLLRPGDTGHGVYELQVRLLQIPHIYDGGAINGRYDTEVRQAVARFQNAYGIHG 94 Query: 154 S--GMVDSSTLEAM 165 G+ +T A+ Sbjct: 95 DETGIYGDNTRHAL 108 >gi|291485022|dbj|BAI86097.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. natto BEST195] Length = 250 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 7/77 (9%) Query: 96 ELPIRPLHLGN---SSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMR 148 LP + L + ++ +L++ L + G+ + +AVK FQ+ Sbjct: 169 PLPSGVIKLTSPYRKGTNILQLQKALAALHFYPDKGAKNNGIDGVYGPKTANAVKRFQLM 228 Query: 149 HGLDPSGMVDSSTLEAM 165 +GL G+ T + Sbjct: 229 NGLTADGIYGPKTKAKL 245 >gi|218288187|ref|ZP_03492486.1| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Alicyclobacillus acidocaldarius LAA1] gi|218241546|gb|EED08719.1| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Alicyclobacillus acidocaldarius LAA1] Length = 773 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 3/97 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ V+ L+ L G S FD + VK FQ GL G+V T Sbjct: 57 LSYGSTGFYVEVLQNALNALGY--DVGQASGVFDGVTQKEVKAFQQAEGLQTDGIVGPMT 114 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 A+ V RQ+ L L++ R V Sbjct: 115 WGALAKAVADY-RQVMTVLSSQSSLVQHVEWKRIVWN 150 >gi|332090818|gb|EGI95910.1| lysM domain protein [Shigella boydii 5216-82] Length = 334 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNLLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|239982441|ref|ZP_04704965.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces albus J1074] gi|291454288|ref|ZP_06593678.1| zinc D-Ala-D-Ala carboxypeptidase [Streptomyces albus J1074] gi|729061|sp|P00733|CBPM_STRAL RecName: Full=Zinc D-Ala-D-Ala carboxypeptidase; AltName: Full=D-alanyl-D-alanine carboxypeptidase; AltName: Full=Metallo DD-peptidase; AltName: Full=Zn DD-peptidase; Flags: Precursor gi|288967|emb|CAA39319.1| metallo (Zn) DD-peptidase [Streptomyces albus] gi|291357237|gb|EFE84139.1| zinc D-Ala-D-Ala carboxypeptidase [Streptomyces albus J1074] gi|228101|prf||1717223A DD peptidase Length = 255 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L G+S +V++L+ R ++G + F ++AV+ FQ +GL G+ Sbjct: 49 SGTLSEGSSGEAVRQLQIR--VAGYPGTGAQLAIDGQFGPATKAAVQRFQSAYGLAADGI 106 Query: 157 VDSSTLE 163 +T Sbjct: 107 AGPATFN 113 >gi|157831772|pdb|1LBU|A Chain A, Hydrolase Metallo (Zn) Dd-Peptidase Length = 213 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L G+S +V++L+ R ++G + F ++AV+ FQ +GL G+ Sbjct: 7 SGTLSEGSSGEAVRQLQIR--VAGYPGTGAQLAIDGQFGPATKAAVQRFQSAYGLAADGI 64 Query: 157 VDSSTLE 163 +T Sbjct: 65 AGPATFN 71 >gi|308126559|ref|ZP_07663817.1| type II secretory pathway, component ExeA [Vibrio parahaemolyticus AQ4037] gi|308109785|gb|EFO47325.1| type II secretory pathway, component ExeA [Vibrio parahaemolyticus AQ4037] Length = 274 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 3/90 (3%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W L L +++ L + L + + S + FD ++ V+LFQ G+ Sbjct: 186 WQAPLKETLRLDMEGPAIEVLDQLLAKA--VSESPLETSIFDGALKERVELFQRWQGIGV 243 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQ-VNLMR 182 G+ TLE + V L +N Sbjct: 244 DGIAGHRTLERLQQSVQPNAPTLASINKEE 273 >gi|297204419|ref|ZP_06921816.1| peptidoglycan-binding membrane protein [Streptomyces sviceus ATCC 29083] gi|197716685|gb|EDY60719.1| peptidoglycan-binding membrane protein [Streptomyces sviceus ATCC 29083] Length = 300 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 8/75 (10%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ-MRHGL 151 G P + L LG+ V L+ RL G D FD V+SAV+ +Q R L Sbjct: 225 GLPPV----LSLGDKGPEVVELQLRLRQVGLYDGEADGD--FDQQVQSAVRTYQVTRFVL 278 Query: 152 DPS-GMVDSSTLEAM 165 G+ +T ++ Sbjct: 279 QDDSGVYGRATRASL 293 >gi|182437776|ref|YP_001825495.1| hypothetical protein SGR_3983 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466292|dbj|BAG20812.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 205 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 15/101 (14%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + + GGW + G S +V ++ + G + ++ + AVK F Sbjct: 68 RGVDLSGGWSRID-----PGASGATVVVIQHLMNQRGH---GLAVDGSYGSLSVGAVKRF 119 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDL-------RIRQLQVN 179 Q GL G V +T + + R Q +N Sbjct: 120 QRSAGLAADGQVGPATWPVLVYTLRQGASGSPVRALQTALN 160 Score = 45.2 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 12/93 (12%) Query: 81 AIAFYQD---ILSRGG-----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 A+ +Q + + G WP L + L G S V+ L+ L G + Sbjct: 115 AVKRFQRSAGLAADGQVGPATWPVL-VYTLRQGASGSPVRALQTALNRRG---ARLAVDG 170 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F + SAV+ +Q + L G T A+ Sbjct: 171 GFGSVTTSAVRAYQSGNRLVTDGEAGPVTWRAL 203 >gi|255324016|ref|ZP_05365141.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium tuberculostearicum SK141] gi|255298873|gb|EET78165.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium tuberculostearicum SK141] Length = 393 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 12/78 (15%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGL------------SVAFDAYVESAVKLFQM 147 R L +G++SV V R L G L KG +FDA + +K FQ Sbjct: 3 RVLRVGDTSVRVAEARATLARLGLLSDFKGELSAWKKQKYSESDKSFDANLSEVLKAFQQ 62 Query: 148 RHGLDPSGMVDSSTLEAM 165 G+ P+G +D TL + Sbjct: 63 SRGIVPTGEIDDLTLREL 80 Score = 41.0 bits (95), Expect = 0.38, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 5/80 (6%) Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 G + + F +A+K +Q GL G+ +T+ A+ + N+ Sbjct: 115 LGFY--QQRVDGHFGTNTHAALKEYQHNCGLQEDGVCGPATIRALGLLGRRITGGSAHNI 172 Query: 181 ---MRIKKLLEQKMGLRYVL 197 R++ + G R V+ Sbjct: 173 QERERVRNAGPKLAGKRVVI 192 >gi|113477429|ref|YP_723490.1| peptidoglycan binding domain-containing protein [Trichodesmium erythraeum IMS101] gi|110168477|gb|ABG53017.1| Peptidoglycan-binding domain 1 [Trichodesmium erythraeum IMS101] Length = 266 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V+ L+ L G + F + AVK FQ G+ G+VD T Sbjct: 202 LAKGDRGSKVKTLQIGLGTMGF--NPGPIDGIFGSKTTGAVKEFQKSKGIKADGIVDQKT 259 Query: 162 LEAMN 166 +A N Sbjct: 260 WKAFN 264 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + + G+ V ++ RL G + + F A AVK FQ GL +G+VD Sbjct: 108 KKISQGSRGAEVWAVQRRLQARGFNPGA--VDSIFGARTTKAVKAFQESVGLTVTGIVDE 165 Query: 160 STLEAMNVP 168 T ++ P Sbjct: 166 LTWTSLAKP 174 >gi|307149992|ref|YP_003885376.1| peptidoglycan-binding domain 1 protein [Cyanothece sp. PCC 7822] gi|306980220|gb|ADN12101.1| Peptidoglycan-binding domain 1 protein [Cyanothece sp. PCC 7822] Length = 516 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 7/100 (7%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V+ L++ L + F + AVK FQ+R GL G V S T Sbjct: 285 LRWGDKGDDVKALQQALNRLNFNAGAADGD--FGDQTQEAVKAFQLRSGLLVDGEVGSVT 342 Query: 162 LEAMNVPVDLRIRQLQV-----NLMRIKKLLEQKMGLRYV 196 E + + + L +++ +Y+ Sbjct: 343 WEKLGGTGKVILPNLASFAASEAAKKLRWNGASSDAEKYL 382 >gi|220931943|ref|YP_002508851.1| peptidase M23B [Halothermothrix orenii H 168] gi|219993253|gb|ACL69856.1| peptidase M23B [Halothermothrix orenii H 168] Length = 324 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L LG+ V+++++ L G + F + V+ FQ+ +GLD G Sbjct: 6 PVLATTLKLGDRGREVKKVQQILRDLGY---DIEVDSVFGYRTKQVVQAFQLNNGLDVDG 62 Query: 156 MVDSSTLEAM 165 +V TL + Sbjct: 63 IVGDKTLNLL 72 >gi|89894299|ref|YP_517786.1| hypothetical protein DSY1553 [Desulfitobacterium hafniense Y51] gi|219668710|ref|YP_002459145.1| NLP/P60 protein [Desulfitobacterium hafniense DCB-2] gi|89333747|dbj|BAE83342.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538970|gb|ACL20709.1| NLP/P60 protein [Desulfitobacterium hafniense DCB-2] Length = 232 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 2/76 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ +V L+ L G + F A ++AV+ FQ + G+V T Sbjct: 30 LKVGSRGSAVSTLQSNLQTLGY--EVGPIDGIFGAKTKTAVQKFQTASRIQVDGIVGPQT 87 Query: 162 LEAMNVPVDLRIRQLQ 177 +A+ + + L+ Sbjct: 88 QQALTKALGSKTTALE 103 >gi|119491208|ref|ZP_01623305.1| hypothetical protein L8106_25370 [Lyngbya sp. PCC 8106] gi|119453549|gb|EAW34710.1| hypothetical protein L8106_25370 [Lyngbya sp. PCC 8106] Length = 176 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 10/102 (9%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S+ V+ L+++L G L + F+ +E+ VK FQ GL G+V T Sbjct: 3 LKSGQSTHQVKNLQQQLERLGY--SVGRLGLPFNTQLENIVKAFQAEQGLPVDGVVGEIT 60 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAA 203 L+++Q L + + + + N Sbjct: 61 --------QLKLQQAIAELELLANSQKSPIPQPPQINNSGDF 94 >gi|302392565|ref|YP_003828385.1| peptidase M23 [Acetohalobium arabaticum DSM 5501] gi|302204642|gb|ADL13320.1| Peptidase M23 [Acetohalobium arabaticum DSM 5501] Length = 354 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L +R L +G V+ L++RL G S + F + VK FQ ++ L G Sbjct: 29 SLGVRDLEVGMRGSDVKLLQQRLNNLGY---SIEVDGIFGKETKKIVKKFQEKNDLFSDG 85 Query: 156 MVDSSTLEAM 165 +V + T+ + Sbjct: 86 IVGTRTIYYL 95 >gi|182436235|ref|YP_001823954.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776864|ref|ZP_08236129.1| Zinc D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus XylebKG-1] gi|178464751|dbj|BAG19271.1| putative muramoyl-pentapeptide carboxypeptidase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657197|gb|EGE42043.1| Zinc D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus XylebKG-1] Length = 260 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L G+S +V++L+ R ++G + AF ++AV+ FQ +GL G+ Sbjct: 54 SGTLQEGSSGEAVRQLQIR--VAGYPGTGNQIAIDGAFGPATKAAVQRFQAAYGLAADGI 111 Query: 157 VDSSTLE 163 + T Sbjct: 112 AGAQTFN 118 >gi|67921138|ref|ZP_00514657.1| ErfK/YbiS/YcfS/YnhG [Crocosphaera watsonii WH 8501] gi|67857255|gb|EAM52495.1| ErfK/YbiS/YcfS/YnhG [Crocosphaera watsonii WH 8501] Length = 191 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 49/157 (31%), Gaps = 52/157 (33%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +V++N+ + ++ +V V +GR +TP + + +++ +P W Sbjct: 66 THVVLNLKERRVYVYQDDQVIANYRVAIGRPGWETPKGNFSVIQMVEDPQW--------- 116 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 ++P V PG + + I Sbjct: 117 -------KNP-------------WNGRVS------------------APGPNSPLGERWI 138 Query: 314 EFYSRNNTY--MHDTPEPILFNNVVRFETSGCVRVRN 348 F Y H TP + + GCVR+RN Sbjct: 139 GFSREGGKYIGFHGTPGEHVMGQ---AVSHGCVRMRN 172 >gi|157145958|ref|YP_001453277.1| hypothetical protein CKO_01711 [Citrobacter koseri ATCC BAA-895] gi|157083163|gb|ABV12841.1| hypothetical protein CKO_01711 [Citrobacter koseri ATCC BAA-895] Length = 334 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 55/172 (31%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL ++VN+ L G+ + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPREGIIVNLAELRLYYFPPGENSVQVYPIGIGLEGLETPVMATRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I ++ + + I + G Sbjct: 148 TPTAGIRKRSL------------ERGITL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRFALRLAYGNGEYLIHGTNAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|166368768|ref|YP_001661041.1| lysozyme [Microcystis aeruginosa NIES-843] gi|166091141|dbj|BAG05849.1| probable lysozyme [Microcystis aeruginosa NIES-843] Length = 504 Score = 53.7 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 26/189 (13%) Query: 50 DRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSV 109 ++ N S IP ++ A + + ++ P+L L G S Sbjct: 209 QQYPNARNFHLAEPGSPIPQATQIVFAGRNQTL----SLVENP--PQLNRGLLLKGMSDE 262 Query: 110 S-----VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR---HGLDPSGMVDSST 161 ++ ++ERL G K L F + + AV+ FQ H + G V T Sbjct: 263 DAPGYDIREMQERLKDLGYY--QKELDGIFGSGTDEAVRKFQADVFGHS-EADGKVGPKT 319 Query: 162 LEAM---NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 + + + +R+ K ++ Y+L+ LE ++NG+V Sbjct: 320 WAKLWGEETTPTPTPQPAEGTYLRLTKTNQKDGDGLYILI------LEYIKNGQVKDHLK 373 Query: 219 VIVGRVDRQ 227 V G+ +Q Sbjct: 374 VCSGQRSKQ 382 >gi|160872859|ref|ZP_02062991.1| LysM domain protein [Rickettsiella grylli] gi|159121658|gb|EDP46996.1| LysM domain protein [Rickettsiella grylli] Length = 326 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 45/163 (27%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L ++ G +++N+ + + + + + V +GR TP+ S I M NP W Sbjct: 104 LPPKRQG---LIINLAELRIYYYPSHRHIVITYPVGIGREGWDTPLGPSWIAEKMRNPIW 160 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +P SI +KD + E + PG Sbjct: 161 TVPESI-RKD----------------------------------RAKEGVYLPIKVAPGP 185 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 N + + + TY +H T + ++GC+R+ Sbjct: 186 DNPLGGYAMRL--KQVTYLIHGTNDSQGIGRRS---SAGCIRL 223 >gi|303239381|ref|ZP_07325909.1| peptidase M14 carboxypeptidase A [Acetivibrio cellulolyticus CD2] gi|302593167|gb|EFL62887.1| peptidase M14 carboxypeptidase A [Acetivibrio cellulolyticus CD2] Length = 423 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L LG++ +V+ ++ L G + + + A+K FQ +GL P G+V Sbjct: 1 METLTLGSTGPNVKLIQSLLNRIGY--NAGPVDGKLGLQTQQAIKAFQRNYGLVPDGVVG 58 Query: 159 SSTLE 163 +T Sbjct: 59 PATWR 63 >gi|295314758|gb|ADF97529.1| PlyM4 [uncultured phage] Length = 329 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ +V+ L+ L +G L G F E+AVK FQ +GL G+ + + Sbjct: 183 GDTGDNVRALQTGLKQAGFLLSVDG---IFGKGTETAVKAFQRANGLAVDGVFGTGSQAK 239 Query: 165 MN 166 +N Sbjct: 240 LN 241 >gi|91794173|ref|YP_563824.1| peptidoglycan binding domain-containing protein [Shewanella denitrificans OS217] gi|91716175|gb|ABE56101.1| Peptidoglycan-binding domain 1 [Shewanella denitrificans OS217] Length = 572 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Query: 100 RPLHLGNSSVSVQRLRERLI-ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R + G+ VQ L L I+G L FD +E + FQ +HGL G+ Sbjct: 487 REISRGSHLSQVQWLENNLAKING---RQARLMDDFDHELERELMAFQRQHGLKADGIAG 543 Query: 159 SSTLEAMN 166 S TL +N Sbjct: 544 SQTLVQLN 551 >gi|319645390|ref|ZP_07999622.1| CtpA protein [Bacillus sp. BT1B_CT2] gi|317392276|gb|EFV73071.1| CtpA protein [Bacillus sp. BT1B_CT2] Length = 465 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 10/99 (10%) Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 Q + + Y + P L + G++ V+ ++ L G + AF Sbjct: 358 PQYKAELPSYAKL------PYLDSKKEYKAGSTGDEVKAAQQMLQALGY---KLNATGAF 408 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 DA E+AVK FQ L +G++ T ++ + ++ Sbjct: 409 DAQTEAAVKAFQKDQKLKTTGILTGETTISLTSKLQDKL 447 >gi|312621329|ref|YP_004022942.1| carboxyl-terminal protease [Caldicellulosiruptor kronotskyensis 2002] gi|312201796|gb|ADQ45123.1| carboxyl-terminal protease [Caldicellulosiruptor kronotskyensis 2002] Length = 472 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + G+ + V ++RL G L + D +A+K FQ + L P G++D Sbjct: 381 TKKYKKGDMDLEVLAAQQRLFYLGYLS---SWTAKMDDNTVAAIKKFQKDNKLYPYGVLD 437 Query: 159 SSTLEAMN 166 +T + +N Sbjct: 438 VTTQKKLN 445 >gi|197121993|ref|YP_002133944.1| ErfK/YbiS/YcfS/YnhG family protein [Anaeromyxobacter sp. K] gi|196171842|gb|ACG72815.1| ErfK/YbiS/YcfS/YnhG family protein [Anaeromyxobacter sp. K] Length = 284 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 51/163 (31%), Gaps = 44/163 (26%) Query: 185 KLLEQKMGLRYVLVNIPAASLEAVENGKVG-LRSTVIVGRVDRQTPILHSRINRIMFNPY 243 +L V+VN+ L + G + V +G+ +TP+ + P Sbjct: 76 WILPPSAAPGSVVVNLSEMRLYLLPGGDAAPVTYPVGIGKDRAKTPLGSFTVIGKTVAPT 135 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P S+ + D P R PG Sbjct: 136 WYPPASMRRDD---------------------------------------PTLPDRVPPG 156 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 N + + + S + +H T EP F + R + GCVR+ Sbjct: 157 PDNPLGTHALRL-SAGSILIHGTDEP--FG-IGRKFSHGCVRL 195 >gi|52080651|ref|YP_079442.1| carboxy-terminal processing protease [Bacillus licheniformis ATCC 14580] gi|52786025|ref|YP_091854.1| CtpA [Bacillus licheniformis ATCC 14580] gi|52003862|gb|AAU23804.1| carboxy-terminal processing protease [Bacillus licheniformis ATCC 14580] gi|52348527|gb|AAU41161.1| CtpA [Bacillus licheniformis ATCC 14580] Length = 465 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 10/99 (10%) Query: 76 AQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 Q + + Y + P L + G++ V+ ++ L G + AF Sbjct: 358 PQYKAELPSYAKL------PYLDSKKEYKAGSTGDEVKAAQQMLQALGY---KLNATGAF 408 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 DA E+AVK FQ L +G++ T ++ + ++ Sbjct: 409 DAQTEAAVKAFQKDQKLKTTGILTGETTISLTSKLQDKL 447 >gi|114567038|ref|YP_754192.1| hypothetical protein Swol_1518 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337973|gb|ABI68821.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 241 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 L R L G+ V+ L+ L I D + F E+AVK FQ L Sbjct: 6 TLGSRVLRRGDEGTDVELLQNLLKILPDPIGSGIKEKGVFGKETENAVKKFQKYFNLAID 65 Query: 155 GMVDSSTLEAMNVPVDLRI 173 G+V ++T + VP I Sbjct: 66 GIVGANTFLFLGVPTASYI 84 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 41/124 (33%), Gaps = 16/124 (12%) Query: 47 IVNDRFDNFLARVDMGIDSDIP-----IISKETIAQTEKAIAFYQDILSRGGWPELPIRP 101 N FD+ D+ I+ +T+ Q IL +G W Sbjct: 126 PANRNFDSKTESAVKMFQRDVHLEGDGIVGPQTVYQLYNYATMGARILQKGRWDR----- 180 Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 N V L+ L G L F + E+AVK Q G+ G+V ++T Sbjct: 181 ----NQGYDVYWLQRNLQELGYY--QGKLDGKFGSQTEAAVKKLQEASGIKVDGIVGANT 234 Query: 162 LEAM 165 + Sbjct: 235 FYHL 238 Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISG--DLDP-SKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 R L G+ V L+ RL + D + + FD+ ESAVK+FQ L+ G Sbjct: 93 ARILQKGSYGYDVWVLQNRLATTAKKFADTLGQPANRNFDSKTESAVKMFQRDVHLEGDG 152 Query: 156 MVDSSTLEAM 165 +V T+ + Sbjct: 153 IVGPQTVYQL 162 >gi|188589391|ref|YP_001922286.1| spore cortex-lytic enzyme, pre-pro-form [Clostridium botulinum E3 str. Alaska E43] gi|188499672|gb|ACD52808.1| spore cortex-lytic enzyme, pre-pro-form [Clostridium botulinum E3 str. Alaska E43] Length = 697 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 27/131 (20%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P PL L + + +V+ ++++L + + FD E AVK+FQ L Sbjct: 321 PGTPLRLNDENNNVKVIQKQLNRISKNFPAIPKIPYENGKFDKITEDAVKVFQKVFNLTQ 380 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL----------LEQKMGLRYVLVNIPAA 203 G+V +T RI + V + R+ +L G+ Y P Sbjct: 381 DGIVGRATWY--------RISSIYVGVKRLAELDQEPEIDGENPPPDSGVEY-----PGY 427 Query: 204 SLEAVENGKVG 214 L+ G+ Sbjct: 428 LLKYGSRGEKV 438 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRE---RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L LG+ V ++ L + + + FD E++VK Q + GL + Sbjct: 609 PGFDLELGDQDGYVTVFQKYVNVLAKNNYISSQIEENGVFDKRTENSVKELQEKFGLKVT 668 Query: 155 GMVDSSTL 162 G+VD T Sbjct: 669 GVVDKITW 676 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLII--SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P L G+ V+ ++ L + PS F + V +FQ GL P G Sbjct: 425 PGYLLKYGSRGEKVKEVQNYLSVISKSYNIPSIKADGIFGQMTKDTVIVFQRLFGLSPDG 484 Query: 156 MVDSSTLE 163 +V +T Sbjct: 485 VVGLNTWN 492 >gi|148266086|ref|YP_001232792.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter uraniireducens Rf4] gi|146399586|gb|ABQ28219.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter uraniireducens Rf4] Length = 292 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 53/165 (32%), Gaps = 46/165 (27%) Query: 185 KLLEQKMGLRYVLVNIPAASLEA---VENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 ++ + +++N+ L + ++ + +G + TP+ R+ + + N Sbjct: 85 WIVPASLKWGGIVINLSEMRLYYSFSFKGARLIASFPIGIGDEGKDTPVGTFRVIQKIEN 144 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W +P+S+ E P Sbjct: 145 PSWYVPQSV---------------------------------------KMEKPELPDVVP 165 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 PG N + + + S +H T +P V R + GC+R+ Sbjct: 166 PGPDNPLGTHAMRL-SERTILIHGTNKPW---GVGRRVSHGCIRL 206 >gi|223043295|ref|ZP_03613342.1| carboxy- processing protease [Staphylococcus capitis SK14] gi|222443506|gb|EEE49604.1| carboxy- processing protease [Staphylococcus capitis SK14] Length = 492 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + HLG+ + +V+ ++ L G S FD+ +ESA+K FQ + L+ +G D Sbjct: 406 KTYHLGDENKNVKTMKIGLTALGY--KVNNESNQFDSELESAIKSFQKDNHLEVTGKFDK 463 Query: 160 ST 161 +T Sbjct: 464 TT 465 >gi|78043998|ref|YP_360473.1| prophage LambdaCh01, N-acetylmuramoyl-L-alanine amidase [Carboxydothermus hydrogenoformans Z-2901] gi|77996113|gb|ABB15012.1| prophage LambdaCh01, N-acetylmuramoyl-L-alanine amidase [Carboxydothermus hydrogenoformans Z-2901] Length = 231 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + LG+ V +++ L G L + F A E+AVK FQ + G+V T Sbjct: 3 IKLGDKGSQVIEVQKMLKQLGFLK--DKVDGVFGANTEAAVKSFQRTKQIAIDGIVGPVT 60 Query: 162 LEAM 165 + Sbjct: 61 YNLL 64 >gi|284053940|ref|ZP_06384150.1| peptidoglycan binding domain-containing protein [Arthrospira platensis str. Paraca] Length = 160 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 19/107 (17%) Query: 76 AQTEKAIAFYQ--------DILSRGGWPELPIRP---------LHLGNSSVSVQRLRERL 118 +TE+A+ +Q ++ R W L P + G+ V+ L+ RL Sbjct: 51 PRTERALINFQLSKGLRPTGVVDRSTWQALSKDPHQQTIAETLIKQGDRGSKVKTLQTRL 110 Query: 119 IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++G + F +AV FQ+ GL+ +G+VD T + + Sbjct: 111 ELTG--HDPGPVDGIFGPKTLAAVSDFQLAMGLESTGVVDDKTWKVL 155 Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G V V L++RL + G + F E A+ FQ+ GL P+G+VD S Sbjct: 18 TLARGTQGVQVAGLQQRLEVHGF--SVGRVDSLFGPRTERALINFQLSKGLRPTGVVDRS 75 Query: 161 TLEAMNVPV 169 T +A++ Sbjct: 76 TWQALSKDP 84 >gi|170076716|ref|YP_001733354.1| peptidoglycan binding protein; putative penicillin-resistant DD-carboxypeptidase [Synechococcus sp. PCC 7002] gi|169884385|gb|ACA98098.1| peptidoglycan binding protein; putative penicillin-resistant DD-carboxypeptidase [Synechococcus sp. PCC 7002] Length = 230 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 8/80 (10%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L +G++ VQ L+ L + G + +D AV FQ + +G++ Sbjct: 38 PRPELRIGSTGTVVQELQTTLRLLGYYSGE--TTGTYDEATVIAVYQFQKAAQIPQTGVM 95 Query: 158 DSSTLEAM------NVPVDL 171 D +T E + N+PV Sbjct: 96 DRTTWETLFPISAANLPVAE 115 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 5/127 (3%) Query: 40 INESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWP-ELP 98 I+ + + ++ A ++ P + E A + + + P LP Sbjct: 106 ISAANLPVAEEQAPTPTASSPTTAQNETPATPAQEATDAEAAPSSSTNQTATSTDPDTLP 165 Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G SV+ L+ RL G + F AV Q LD G+V Sbjct: 166 L--LKEGMEGDSVKLLQTRLQALGYYTG--RIDGIFGPNTRIAVIAAQTALKLDGDGIVG 221 Query: 159 SSTLEAM 165 + T + Sbjct: 222 AQTWRKL 228 >gi|332978200|gb|EGK14932.1| N-acetylmuramoyl-L-alanine amidase [Desmospora sp. 8437] Length = 330 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 94 W-PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 W P + R G+ V L+ RL G + F + AV+ FQ R GL Sbjct: 103 WAPGVSNRIFKKGDRGGYVWELQRRLQFIGYYSG--KIDGKFGWQTDRAVRDFQYRFGLR 160 Query: 153 PSGMVDSST 161 G V S T Sbjct: 161 VDGRVGSKT 169 Score = 45.2 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G + V L+ RL G + + Y AV+LFQ + GL+ G+V S T Sbjct: 35 LKVGAAGGDVYELQGRLKYLGFYTGKIDGRLGWRTY--RAVRLFQYQFGLEVDGLVGSHT 92 Query: 162 LEAM 165 + Sbjct: 93 KRKL 96 >gi|170726803|ref|YP_001760829.1| peptidoglycan-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|169812150|gb|ACA86734.1| Peptidoglycan-binding domain 1 protein [Shewanella woodyi ATCC 51908] Length = 294 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 12/119 (10%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + +S V+ L+E L + L P D E AV FQ + GL G+V + T Sbjct: 4 LRIKSSGEEVKSLQELLTVL-HLSPGPIDGEFGDKT-EDAVLQFQEQQGLYADGVVGTIT 61 Query: 162 LEAMNVPVDLRIR---QLQVNLMRIKKL-------LEQKMGLRYVLVNIPAASLEAVEN 210 A+ +++ Q V R+ + Y+ + A L E Sbjct: 62 WNALKKAAVVQLDEQNQPSVESDRLMSWQRVAADPYQDGYNRFYLREDAAKAYLRVYEK 120 >gi|54297508|ref|YP_123877.1| hypothetical protein lpp1553 [Legionella pneumophila str. Paris] gi|53751293|emb|CAH12704.1| hypothetical protein lpp1553 [Legionella pneumophila str. Paris] Length = 244 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L + + V++N+ L + V + V +G+ +TP+ SRI NP Sbjct: 88 RFILP-NVPRKGVVINLAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRITSKEINP 146 Query: 243 YWV 245 W Sbjct: 147 TWR 149 >gi|289642266|ref|ZP_06474415.1| NLP/P60 protein [Frankia symbiont of Datisca glomerata] gi|289507901|gb|EFD28851.1| NLP/P60 protein [Frankia symbiont of Datisca glomerata] Length = 360 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 8/79 (10%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 + S G E P R L LG+ V RL+ RL I D F V+ FQ Sbjct: 127 EWESSDGRQEFPRRSLRLGSQGDPVARLQIRLGIFAD--------GRFGPRTARGVRTFQ 178 Query: 147 MRHGLDPSGMVDSSTLEAM 165 GL +V T A+ Sbjct: 179 SGAGLTIDAVVGPRTWGAL 197 >gi|254421544|ref|ZP_05035262.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] gi|196189033|gb|EDX83997.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] Length = 146 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS-GMV 157 + PLH G+ +V +L+ RL ++ FD + A+ FQ +G+ G Sbjct: 12 LEPLHEGDRGPAVAQLQARLAELNAYSSQ--ITGLFDVTTKRALTDFQADYGITEEAGFF 69 Query: 158 DSSTLEAM 165 T A+ Sbjct: 70 GPQTWYAL 77 >gi|294139662|ref|YP_003555640.1| general secretion pathway protein A [Shewanella violacea DSS12] gi|293326131|dbj|BAJ00862.1| general secretion pathway protein A [Shewanella violacea DSS12] Length = 531 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + + G++ +Q L L + L FD+ +E+ +K FQ +HGL Sbjct: 445 PTDQLGEIDKGSAQSQIQWLENSLAQVD--SRTPRLLNDFDSQLETKLKHFQRQHGLRAD 502 Query: 155 GMVDSSTLEAMN 166 + S TL +N Sbjct: 503 AIAGSQTLVQLN 514 >gi|220907385|ref|YP_002482696.1| peptidoglycan-binding domain 1 protein [Cyanothece sp. PCC 7425] gi|219863996|gb|ACL44335.1| Peptidoglycan-binding domain 1 protein [Cyanothece sp. PCC 7425] Length = 160 Score = 53.3 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 7/81 (8%) Query: 89 LSRGGWPELPIR----PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 L+ W +P L+ ++ +V L+E L G G F A E+AV Sbjct: 6 LNADSWRPVPAALTGPVLYPWDAGPAVFELQELLNAHGFRLKLDGD---FGAKTETAVGE 62 Query: 145 FQMRHGLDPSGMVDSSTLEAM 165 FQ R+GL G+V T A+ Sbjct: 63 FQRRYGLRVDGIVGPQTWVAL 83 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G++ V +L+ L ISG F A E A+ FQ +H L P G+VD Sbjct: 91 TRVLKRGHTGADVFQLQWLLQISG---QQVVRDGIFGAATEQALIEFQQKHKLKPDGIVD 147 Query: 159 SSTLEAM 165 T + Sbjct: 148 LITWRML 154 >gi|289643979|ref|ZP_06476080.1| Peptidoglycan-binding domain 1 protein [Frankia symbiont of Datisca glomerata] gi|289506207|gb|EFD27205.1| Peptidoglycan-binding domain 1 protein [Frankia symbiont of Datisca glomerata] Length = 262 Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V R+++RL G S + F VK +Q +HGL G+V + T + Sbjct: 205 TEVARVQQRLTDLGY---SLAVDGIFGPRTTRVVKDYQRQHGLVADGIVGARTYAQL 258 >gi|169834766|ref|YP_001715696.1| LycA [Clostridium botulinum A3 str. Loch Maree] gi|169408873|gb|ACA57283.1| LycA [Clostridium botulinum A3 str. Loch Maree] Length = 316 Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++ LI G S G F +A+K FQ L G+V T Sbjct: 249 KQGERGGITKVIQQMLINIGYPVGSHGADGVFGDDTVTAIKAFQRDCHLVVDGIVGKETW 308 Query: 163 EAM 165 EA+ Sbjct: 309 EAL 311 >gi|168184756|ref|ZP_02619420.1| glycosyl hydrolase, family 25/peptidoglycan binding domain protein [Clostridium botulinum Bf] gi|182672158|gb|EDT84119.1| glycosyl hydrolase, family 25/peptidoglycan binding domain protein [Clostridium botulinum Bf] Length = 316 Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++ LI G S G F +A+K FQ L G+V T Sbjct: 249 KQGERGGITKVIQQMLINIGYPVGSHGADGVFGDDTVTAIKAFQRDCHLVVDGIVGKETW 308 Query: 163 EAM 165 EA+ Sbjct: 309 EAL 311 >gi|302561223|ref|ZP_07313565.1| N-acetylmuramyl-L-alanine amidase [Streptomyces griseoflavus Tu4000] gi|302478841|gb|EFL41934.1| N-acetylmuramyl-L-alanine amidase [Streptomyces griseoflavus Tu4000] Length = 262 Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 11/89 (12%) Query: 86 QDILSRGG-----WPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 + +++ G W L + + G++ +V+RL+ L + L + + F + Sbjct: 172 RKLVADGSVGPKTWTALLSAGQVVTVRGGSTGEAVKRLQRALTAA--LGRTVAVDGTFGS 229 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ESAV +Q GL G+ +T A+ Sbjct: 230 ATESAVVSYQSSRGLTADGIAGPATWSAL 258 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G + V+ L+ L + S F ESAVK FQ L G V Sbjct: 126 TLKRGATGEHVRALQTLLKAQSFDPGTVDGS--FGPATESAVKAFQASRKLVADGSVGPK 183 Query: 161 TLEAM 165 T A+ Sbjct: 184 TWTAL 188 >gi|182417949|ref|ZP_02949259.1| spore cortex-lytic enzyme pre-pro-form [Clostridium butyricum 5521] gi|237669439|ref|ZP_04529421.1| peptidoglycan-binding domain 1 protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378258|gb|EDT75792.1| spore cortex-lytic enzyme pre-pro-form [Clostridium butyricum 5521] gi|237655326|gb|EEP52884.1| peptidoglycan-binding domain 1 protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 575 Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P + L LG+S V+ ++ +L + ++ F+ ++AVK FQ L Sbjct: 307 PGKALKLGDSGSDVKVIQTQLNRIRKNYPAIPQINNVNGEFNDATKNAVKEFQKIFNLTA 366 Query: 154 SGMVDSSTLE 163 G+V T Sbjct: 367 DGIVGKKTWY 376 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 67/181 (37%), Gaps = 22/181 (12%) Query: 4 YLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINE----SYHSIVNDRFDNFLARV 59 Y++ N Y L +G S + + + L+ I + VN F++ Sbjct: 298 YIQGNIESY---PGKALKLGDSGSDVKVIQTQLNRIRKNYPAIPQINNVNGEFNDATKNA 354 Query: 60 DMGIDSDIP-----IISKETIAQTEK---AIAFYQDILSRGG----WPELPIRPLHLGNS 107 I+ K+T + + + ++ S G E+P L LG+ Sbjct: 355 VKEFQKIFNLTADGIVGKKTWYKISQIYVGVKKLAELESEGEELQIPSEIPTEVLKLGSQ 414 Query: 108 SVSVQRLRERLIISG---DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 +V+ L+ LI G D ++ FD E++VK FQ LD G+V T Sbjct: 415 GTNVKILQYLLICIGAFYDSILPVKITGKFDTDTENSVKSFQQEFNLDNDGIVGKKTWSK 474 Query: 165 M 165 + Sbjct: 475 L 475 Score = 44.1 bits (103), Expect = 0.051, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 8/89 (8%) Query: 85 YQDIL-----SRGGWPELPIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDA 136 Y++I + G + + P + G VQ+++ L I P + F + Sbjct: 479 YKNIEPHILDASGKFIKYPGYLIKKGKRGEDVQQIQVWLNTIHSKYPFIPEVDVDGIFGS 538 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 AV FQ + L G+V T + + Sbjct: 539 GTREAVMDFQRWNDLVEDGIVGKLTWDKL 567 >gi|158334241|ref|YP_001515413.1| ErfK/YbiS/YcfS/YnhG family protein [Acaryochloris marina MBIC11017] gi|158304482|gb|ABW26099.1| ErfK/YbiS/YcfS/YnhG family protein [Acaryochloris marina MBIC11017] Length = 201 Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 54/184 (29%), Gaps = 47/184 (25%) Query: 180 LMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 L + + L G R + ++I + + +V V VG+ TP+ + + Sbjct: 58 LDQPRNYLPSAHGTRRLELSISRRQVTLFQGDQVLKSYPVAVGKAGWPTPVGDFEVQTKV 117 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W Q+P + + G W Sbjct: 118 RNPSW----------------QNP--FQGKGYVI--PGGAPDNPLSTRW----------- 146 Query: 300 QDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLL 357 + +N H TP +V + GCVR+ +I +L + Sbjct: 147 --------LG---FWTNGKNWIGFHGTPNR---ASVGSAASHGCVRMYDEHIQELFELVA 192 Query: 358 KDTP 361 TP Sbjct: 193 VGTP 196 >gi|332798862|ref|YP_004460361.1| ErfK/YbiS/YcfS/YnhG family protein [Tepidanaerobacter sp. Re1] gi|332696597|gb|AEE91054.1| ErfK/YbiS/YcfS/YnhG family protein [Tepidanaerobacter sp. Re1] Length = 176 Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L G+ V +++RL G + + ++ + AV FQ GL PSG Sbjct: 103 TFGLNTLSQGSRGSDVLEVQKRLAGYGFYNGA--YDGIYEHETQKAVLAFQKAKGLYPSG 160 Query: 156 MVDSSTLEAMNVP 168 VD++T + + + Sbjct: 161 KVDAATYKELGIS 173 >gi|220916767|ref|YP_002492071.1| ErfK/YbiS/YcfS/YnhG family protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219954621|gb|ACL65005.1| ErfK/YbiS/YcfS/YnhG family protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 285 Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 51/163 (31%), Gaps = 44/163 (26%) Query: 185 KLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 +L ++VN+ L + G + V +G+ +TP+ + P Sbjct: 77 WILPPSAAPGSIVVNLSEMRLYLLPGGGAAPVTYPVGIGKDRAKTPLGSFTVIGKTVAPT 136 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P S+ + D P R PG Sbjct: 137 WYPPASMRRDD---------------------------------------PTLPDRVPPG 157 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 N + + + S + +H T EP F + R + GCVR+ Sbjct: 158 PDNPLGTHALRL-SAGSILIHGTDEP--FG-IGRKFSHGCVRL 196 >gi|332296341|ref|YP_004438264.1| NLP/P60 protein [Thermodesulfobium narugense DSM 14796] gi|332179444|gb|AEE15133.1| NLP/P60 protein [Thermodesulfobium narugense DSM 14796] Length = 233 Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ S VQ ++E+L G + ++ +D E AVKL+Q L +G+VD Sbjct: 26 TLKPGDISDDVQNIKEKLYDLGY---NVTVNKVYDEKTERAVKLYQKEAKLPITGIVDDI 82 Query: 161 TLEAMNV 167 T + + + Sbjct: 83 TYQCLTM 89 >gi|326328746|ref|ZP_08195084.1| zinc D-Ala-D-Ala carboxypeptidase [Nocardioidaceae bacterium Broad-1] gi|325953489|gb|EGD45491.1| zinc D-Ala-D-Ala carboxypeptidase [Nocardioidaceae bacterium Broad-1] Length = 251 Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+S +V +L+ R+ + ++ +AV+ FQ +GL G+ Sbjct: 42 SGTLQQGSSGNAVTQLQIRVAGWAATGTIFSIDGSYGPATTTAVRNFQAAYGLAADGVAG 101 Query: 159 SSTLEAM 165 ++T + Sbjct: 102 TNTFNKL 108 >gi|255534894|ref|YP_003095265.1| putative phage-related protein (hydrolase) [Flavobacteriaceae bacterium 3519-10] gi|255341090|gb|ACU07203.1| putative phage-related protein (hydrolase) [Flavobacteriaceae bacterium 3519-10] Length = 273 Score = 53.3 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L + + +V L E L G +S +F A V++AVK FQ ++ L G+V Sbjct: 3 TLKVKAKAPAVYTLCEMLSKLGY---PVKISDSFTAEVDAAVKDFQKKNALVVDGVVGMK 59 Query: 161 TLEAM 165 T + + Sbjct: 60 TWQVL 64 >gi|295314764|gb|ADF97532.1| PlyM7 [uncultured phage] Length = 356 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 11/76 (14%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ +V+ L+ L +G L G F E+AVK FQ +GL G+ Sbjct: 220 GDTGAAVKTLQSELKQAGFLLSVDG---IFGKGTETAVKAFQRANGLAVDGVFG------ 270 Query: 165 MNVPVDLRIRQLQVNL 180 ++ + NL Sbjct: 271 --TGSQAKLDAILANL 284 >gi|291437660|ref|ZP_06577050.1| lipoprotein [Streptomyces ghanaensis ATCC 14672] gi|291340555|gb|EFE67511.1| lipoprotein [Streptomyces ghanaensis ATCC 14672] Length = 277 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 24/137 (17%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+S V+ L+ RL + L G + +D E AVK FQ + GL +G D+ T + Sbjct: 74 PGDSGRDVRELQARLRQAAWL--FHGPTGTYDGPTEEAVKGFQGKRGLPRTGRTDTVTWQ 131 Query: 164 AMNVPVDLRIRQLQVNLM--RIKKLL----EQKMGL------RYVLVNIPAASLEAVENG 211 R L + R + L R + ++ + +L + +G Sbjct: 132 ----------RLLGMTREPGRWELYLMGGQPADAPDARCRTGRVLCISKSSRTLRWMVDG 181 Query: 212 KVGLRSTVIVGRVDRQT 228 + V G T Sbjct: 182 RTVSTMPVRFGSEYTPT 198 >gi|90407231|ref|ZP_01215418.1| general secretion pathway protein a [Psychromonas sp. CNPT3] gi|90311654|gb|EAS39752.1| general secretion pathway protein a [Psychromonas sp. CNPT3] Length = 526 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 8/109 (7%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGW--PELPIRPLHLGNSSVSVQRLRERLIIS 121 + ++ + I+ +E + +Y D W P L L +V+ L++ L Sbjct: 410 EDYQLLLGSQLISVSEAWLQYYWDGDLTLLWKRPFKEKGVLKLSQQGENVRWLKQTLSTL 469 Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL----EAMN 166 +D G FD + S V+ FQ L G+V S TL +A+N Sbjct: 470 QAVD--LGNDDYFDPALASKVQQFQETQQLSQDGIVGSRTLMLLMQALN 516 >gi|88813439|ref|ZP_01128675.1| N-acetylmuramoyl-L-alanine amidase, putative [Nitrococcus mobilis Nb-231] gi|88789310|gb|EAR20441.1| N-acetylmuramoyl-L-alanine amidase, putative [Nitrococcus mobilis Nb-231] Length = 236 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 6/74 (8%) Query: 95 PELPIRP---LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 P +P L L V L+ L +G + G F +AV+ FQ L Sbjct: 160 PTVPRPTEPLLRLMARGQPVLHLQAMLSRAGHILEEDG---IFGQNTLAAVQAFQRSQDL 216 Query: 152 DPSGMVDSSTLEAM 165 G+V T A+ Sbjct: 217 KADGIVGPRTWTAL 230 >gi|255020594|ref|ZP_05292657.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus caldus ATCC 51756] gi|254969979|gb|EET27478.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus caldus ATCC 51756] Length = 306 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 55/172 (31%), Gaps = 47/172 (27%) Query: 189 QKMGLRYVLVNIPAASLEAV---ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 + +++N+ A L +NGKV + + +GR +TP+ +++ + +P W Sbjct: 90 PDAPRQGIVINLAAMRLFYYPEGKNGKVVVSYPLGIGREGWRTPLGKTQVTGKVKDPTWT 149 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 P SI + E+ + V G Sbjct: 150 PPASI---------------------RAEHAEKGEILPDVV--------------PAGPQ 174 Query: 306 NAMASTKIEF--YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + H T +P +R + GC+R+ D+ Sbjct: 175 NPLGQYALRLGWP-GYLI--HGTDKPW--GVGMR-VSHGCIRL-YPEDIAKL 219 >gi|148979384|ref|ZP_01815490.1| putative general secretion pathway protein A [Vibrionales bacterium SWAT-3] gi|145961820|gb|EDK27113.1| putative general secretion pathway protein A [Vibrionales bacterium SWAT-3] Length = 546 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 7/83 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W + L G +V L ++S L S FD ++ V+ FQ G+ Sbjct: 458 WKQPLRETLKEGYQGEAVALLDL--LLSEVLGEVVSGSDVFDYELKMKVEAFQTWQGMSV 515 Query: 154 SGMVDSSTLEAMNVPVDLRIRQL 176 G+ TL + R+ QL Sbjct: 516 DGIAGQRTLARL-----QRLAQL 533 >gi|158321567|ref|YP_001514074.1| peptidoglycan binding domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158141766|gb|ABW20078.1| Peptidoglycan-binding domain 1 protein [Alkaliphilus oremlandii OhILAs] Length = 198 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+S V RL+ L+ +G + F + SAV FQ + G+V T Sbjct: 71 LSMGSSGPDVTRLQHLLMSAGY--NPGPIDGIFGSMTHSAVMAFQRDSHIAVDGIVGPRT 128 Query: 162 LEAMNV 167 A+ V Sbjct: 129 WTALGV 134 >gi|257053977|ref|YP_003131810.1| Peptidoglycan-binding domain 1 protein [Halorhabdus utahensis DSM 12940] gi|256692740|gb|ACV13077.1| Peptidoglycan-binding domain 1 protein [Halorhabdus utahensis DSM 12940] Length = 864 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG +VQ+L+E L G + + AV FQ GL+P+G V T Sbjct: 3 LTLGADGEAVQQLQELLAERGY--DVGEIDGEYGRRTRDAVASFQREQGLEPTGSVGPDT 60 Query: 162 LEAMNVPVD 170 E +++ VD Sbjct: 61 AEELDLDVD 69 >gi|253702665|ref|YP_003023854.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. M21] gi|251777515|gb|ACT20096.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter sp. M21] Length = 409 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 17/102 (16%) Query: 189 QKMGLRYVLVNIPAASLEAVE---NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 + +++N+ L + G+V V VG +R TP R+ R P W Sbjct: 88 PDAPRKGIVINLATMRLFRFKEDSKGQVVSTYPVGVGTAERPTPTGKMRVERKTALPTWY 147 Query: 246 IPRSII-----QKDMMA-LLRQDPQ--------YLKDNNIHM 273 +P SI + D++ + P+ YL + Sbjct: 148 VPASIAEDHKKKGDLLPAKVPPGPENPLGERALYLSKAGYLI 189 >gi|148359132|ref|YP_001250339.1| hypothetical protein LPC_1022 [Legionella pneumophila str. Corby] gi|296107181|ref|YP_003618881.1| hypothetical protein lpa_02313 [Legionella pneumophila 2300/99 Alcoy] gi|148280905|gb|ABQ54993.1| hypothetical protein LPC_1022 [Legionella pneumophila str. Corby] gi|295649082|gb|ADG24929.1| Hypothetical protein lpa_02313 [Legionella pneumophila 2300/99 Alcoy] Length = 244 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L + + +++N+ L + V + V +G+ +TP+ SRI NP Sbjct: 88 RFILP-NVPRKGIVINLAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRITSKEINP 146 Query: 243 YWV 245 W Sbjct: 147 TWR 149 >gi|309389108|gb|ADO76988.1| cell wall hydrolase SleB [Halanaerobium praevalens DSM 2228] Length = 229 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G+ + V L++RL S + + AVK FQ GL G+ Sbjct: 39 MQSGDEGIDVAVLQQRLKKLNYYVGS--VDGIYGQATIEAVKKFQADKGLPVDGVFGQRA 96 Query: 162 LE 163 L+ Sbjct: 97 LK 98 >gi|315150422|gb|EFT94438.1| peptidase [Enterococcus faecalis TX0012] Length = 477 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV FQ ++GL +G +D+ Sbjct: 389 KTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDFQQKNGLPVTGEIDN 446 Query: 160 ST 161 T Sbjct: 447 ET 448 >gi|295314762|gb|ADF97531.1| PlyM6 [uncultured phage] Length = 357 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + +V+ L+ L +G L G F E+AVK FQ +GL G+ + + Sbjct: 221 GVTGAAVKTLQSELKQAGFLLSVDG---VFGKGTETAVKAFQRANGLAVDGVFGTGSQAK 277 Query: 165 MN 166 +N Sbjct: 278 LN 279 >gi|251779050|ref|ZP_04821970.1| peptidoglycan-binding domain 1 protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083365|gb|EES49255.1| peptidoglycan-binding domain 1 protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 791 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 27/131 (20%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P PL L + + +V+ ++++L + + FD E AVK+FQ L Sbjct: 321 PGTPLRLNDENNNVKVIQKQLNRISKNFPAIPKIPYENGKFDKITEDAVKVFQKVFNLTQ 380 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL----------LEQKMGLRYVLVNIPAA 203 G+V +T RI + V + R+ +L G Y P Sbjct: 381 DGIVGRATWY--------RISSIYVGVKRLAELDQEPEIDGENPPPDSGGEY-----PGY 427 Query: 204 SLEAVENGKVG 214 L+ G+ Sbjct: 428 LLKYGSRGEKV 438 Score = 45.6 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 16/134 (11%) Query: 98 PIRPLHLGNSSVSVQRLRERLII--SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P L G+ V+ ++ L + P+ F + AV FQ GL P G Sbjct: 425 PGYLLKYGSRGEKVKEVQNYLSVISKSYNIPNIKADGIFGQMTKDAVIAFQRLFGLAPDG 484 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 ++ +T N + ++ + L ++ +Y P L G+ Sbjct: 485 IIGINTW---NKIYYVYKDLIKGTAQQD---LNEEFDGKY-----PGYLLSYGSKGEKVR 533 Query: 216 RSTV---IVGRVDR 226 +V + Sbjct: 534 EMQTYLSVVSKSYN 547 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLR---ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L LG+ V+ + L + + + FD E++VK Q + GL + Sbjct: 703 PGFDLELGDQDGYVKVFQMYVNVLAKNNYISSQIEENGVFDKRTENSVKELQEKFGLKVT 762 Query: 155 GMVDSSTL 162 G+VD T Sbjct: 763 GVVDKITW 770 Score = 37.9 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISG--DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P L G+ V+ ++ L + PS F +AV FQ GL G Sbjct: 519 PGYLLSYGSKGEKVREMQTYLSVVSKSYNIPSINADGIFGDMTRNAVLSFQRLFGLAQDG 578 Query: 156 MVDSSTLE 163 +V +T Sbjct: 579 VVGLNTWN 586 >gi|297610914|ref|NP_001065361.2| Os10g0557900 [Oryza sativa Japonica Group] gi|14165321|gb|AAK55453.1|AC069300_8 putative metalloproteinase [Oryza sativa Japonica Group] gi|31433475|gb|AAP54980.1| Matrixin family protein, expressed [Oryza sativa Japonica Group] gi|255679626|dbj|BAF27198.2| Os10g0557900 [Oryza sativa Japonica Group] Length = 355 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 105 GNSSVSVQRLRERLIISGDL-DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ + L+ L G + P + + AFD ++E AV+ +Q R L +G +D++TL+ Sbjct: 48 GSHVTGLAELKRYLARFGYMAKPGRDTTDAFDEHLEVAVRRYQTRFSLPVTGRLDNATLD 107 Query: 164 AM 165 + Sbjct: 108 QI 109 >gi|269967430|ref|ZP_06181490.1| putative general secretion pathway protein A [Vibrio alginolyticus 40B] gi|269828018|gb|EEZ82292.1| putative general secretion pathway protein A [Vibrio alginolyticus 40B] Length = 538 Score = 52.9 bits (126), Expect = 9e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L L +++ L +RL+ + + FD ++ V+LFQ G+ G+ Sbjct: 457 TLRLDMEGPAIEVL-DRLLAE-AVSEPLLETSIFDGAMKERVELFQRWQGIGVDGIAGKR 514 Query: 161 TLEAMNVPVDLRIRQLQ 177 TL+ + V QL Sbjct: 515 TLDRLQQNVQPDAPQLA 531 >gi|298250948|ref|ZP_06974752.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] gi|297548952|gb|EFH82819.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] Length = 317 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP G+S +V+ ++ L+ G S + F + S VK FQ +GL Sbjct: 49 WPT-----YQSGSSGENVRSIQYMLVQRGY---SLTVDGQFGSGTASVVKSFQSTNGLSV 100 Query: 154 SGMVDSSTLEAMNVPVD 170 G+V T E + V Sbjct: 101 DGIVGPQTWEKLIVTTQ 117 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ +V L+ +L G S AF ESAVK FQ GL G+ T Sbjct: 119 GSNGSAVTTLQRQLNAHG---ASLTTDGAFAPATESAVKSFQSSKGLSADGIAGLDTWSQ 175 Query: 165 M 165 + Sbjct: 176 L 176 >gi|91228363|ref|ZP_01262290.1| putative general secretion pathway protein A [Vibrio alginolyticus 12G01] gi|91188062|gb|EAS74367.1| putative general secretion pathway protein A [Vibrio alginolyticus 12G01] Length = 538 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L L +++ L +RL+ + + FD ++ V+LFQ G+ G+ Sbjct: 457 TLRLDMEGPAIEVL-DRLLAE-AVSEPLLETSIFDGAMKERVELFQRWQGIGVDGIAGKR 514 Query: 161 TLEAMNVPVDLRIRQLQ 177 TL+ + V QL Sbjct: 515 TLDRLQQNVQPDAPQLA 531 >gi|86158711|ref|YP_465496.1| ErfK/YbiS/YcfS/YnhG like protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775222|gb|ABC82059.1| ErfK/YbiS/YcfS/YnhG like protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 285 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 51/163 (31%), Gaps = 44/163 (26%) Query: 185 KLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 +L ++VN+ L + G + V +G+ +TP+ + P Sbjct: 77 WILPPSAAPGSIVVNLSEMRLYLLPGGGAAPVTYPVGIGKDRAKTPLGSFTVIGKTVAPT 136 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W P S+ + D P R PG Sbjct: 137 WYPPASMRRDD---------------------------------------PTLPDRVPPG 157 Query: 304 KINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 N + + + S + +H T EP F + R + GCVR+ Sbjct: 158 PDNPLGTHALRL-SAGSILIHGTDEP--FG-IGRKFSHGCVRL 196 >gi|21230048|ref|NP_635965.1| hypothetical protein XCC0573 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769959|ref|YP_244721.1| hypothetical protein XC_3660 [Xanthomonas campestris pv. campestris str. 8004] gi|21111570|gb|AAM39889.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575291|gb|AAY50701.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 308 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 18/37 (48%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 A+ AVK FQ HGL G+V TL+A+ Sbjct: 139 NADGAYGQRTGEAVKAFQRAHGLQEDGVVGGDTLKAL 175 >gi|295314760|gb|ADF97530.1| PlyM5 [uncultured phage] Length = 284 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ +V+ L+ L +G L G F E+AVK FQ +GL G+ + + Sbjct: 221 GDTGAAVKTLQSELKQAGFLLSVDG---IFGKGTETAVKAFQRGNGLVVDGVFGTGSQAK 277 Query: 165 MN 166 +N Sbjct: 278 LN 279 >gi|125532922|gb|EAY79487.1| hypothetical protein OsI_34615 [Oryza sativa Indica Group] gi|125575664|gb|EAZ16948.1| hypothetical protein OsJ_32430 [Oryza sativa Japonica Group] Length = 337 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 105 GNSSVSVQRLRERLIISGDL-DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ + L+ L G + P + + AFD ++E AV+ +Q R L +G +D++TL+ Sbjct: 30 GSHVTGLAELKRYLARFGYMAKPGRDTTDAFDEHLEVAVRRYQTRFSLPVTGRLDNATLD 89 Query: 164 AM 165 + Sbjct: 90 QI 91 >gi|321314327|ref|YP_004206614.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis BSn5] gi|320020601|gb|ADV95587.1| N-acetylmuramoyl-L-alanine amidase; skin element [Bacillus subtilis BSn5] Length = 273 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSK----GLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 S +V++++ L K G+ + A++ FQ+ +GL+P G+ Sbjct: 203 PLMHSAAVEQIQTALAALHFYPDKKAKNFGIDSYYGPKTADAIRRFQLMNGLNPDGIYGP 262 Query: 160 STLE 163 T Sbjct: 263 ETKA 266 >gi|289667240|ref|ZP_06488315.1| hypothetical protein XcampmN_01617 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 427 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 101 PLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L G V++L+ +L G D P F + AV+ FQ GL G+ Sbjct: 211 KLEQGERGEQVKQLQSQLAQLGAVGCDGKPPHADGD-FGGNTKYAVEQFQRERGLQVDGV 269 Query: 157 VDSSTLEAM 165 V S A+ Sbjct: 270 VGSQAQAAL 278 >gi|288921194|ref|ZP_06415480.1| cell wall hydrolase/autolysin [Frankia sp. EUN1f] gi|288347401|gb|EFC81692.1| cell wall hydrolase/autolysin [Frankia sp. EUN1f] Length = 428 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 19/36 (52%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + FD +++AV+ FQ GL G++ T A+ Sbjct: 87 TADLFDRELDNAVRAFQQSRGLSVDGIIGPDTFRAI 122 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Query: 108 SVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V L+ERL G D+ + G F A + AV+ FQ GLDP G+ TL + Sbjct: 144 GDDVTALQERLSNMGFDVGRADG---IFGARTDVAVRDFQRNRGLDPDGLCGPRTLREL 199 >gi|186683324|ref|YP_001866520.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186465776|gb|ACC81577.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 126 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 7/108 (6%) Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP 126 +P AQT A+A + L G+ +V+ ++ L G + Sbjct: 24 LPFSFAPAKAQTNNALA-----ARFSKYSPTKAPFLAPGSRGQAVRDVQAALQRLGFYNG 78 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 + + + + +AV FQ H + G V + T +A+ + R R Sbjct: 79 A--VDGIYGSRTATAVATFQRSHRIVGDGRVGALTWQALRSSIAPRRR 124 >gi|284990257|ref|YP_003408811.1| peptidoglycan-binding domain 1 protein [Geodermatophilus obscurus DSM 43160] gi|284063502|gb|ADB74440.1| Peptidoglycan-binding domain 1 protein [Geodermatophilus obscurus DSM 43160] Length = 224 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 32/64 (50%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG++ +V+RL+E L P + F ++ V+ FQ R GL G+V +T Sbjct: 159 LRLGSTGDAVRRLQETLNRWYPSLPPLAVDGDFGPRTDARVRYFQGRAGLVADGIVGPAT 218 Query: 162 LEAM 165 A+ Sbjct: 219 WRAL 222 >gi|167629767|ref|YP_001680266.1| peptidoglycan binding domain 1, putative [Heliobacterium modesticaldum Ice1] gi|167592507|gb|ABZ84255.1| peptidoglycan binding domain 1, putative [Heliobacterium modesticaldum Ice1] Length = 230 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+ R L+ G S VQ+L+ L G + F A A+K FQ L Sbjct: 29 PQFGSRQLYRGVSGADVQQLQGYLKEMGYFAEEP--TGYFGAITFDALKQFQAYRDLIID 86 Query: 155 GMVDSSTLEAM 165 G+ T +A+ Sbjct: 87 GVAGPQTFKAL 97 >gi|308535396|ref|YP_002140776.2| peptidoglycan L,D-transpeptidase lipoprotein [Geobacter bemidjiensis Bem] gi|308052741|gb|ACH40980.2| peptidoglycan L,D-transpeptidase lipoprotein, YkuD family, SPOR domain-containing protein [Geobacter bemidjiensis Bem] Length = 440 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 17/102 (16%) Query: 189 QKMGLRYVLVNIPAASL-EAVENGK--VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 + +++N+ L E+GK V V VG +R TP RI R P W Sbjct: 119 PDAPRKGIVINLATMRLFRFKEDGKAQVVSTYPVGVGTAERPTPTGKMRIERKTALPTWH 178 Query: 246 IPRSII-----QKDMMA-LLRQDPQ--------YLKDNNIHM 273 +P SI + D++ + P+ YL + Sbjct: 179 VPASIAEDHRKKGDLLPAKVPPGPENPLGERALYLSKAGYLI 220 >gi|312136042|ref|YP_004003380.1| carboxyl-terminal protease [Caldicellulosiruptor owensensis OL] gi|311776093|gb|ADQ05580.1| carboxyl-terminal protease [Caldicellulosiruptor owensensis OL] Length = 472 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + G+ + + ++RL G L + D AV+ FQ + L PSG++D Sbjct: 381 TKKFKKGDMDLEILAAQQRLFYLGYLS---SWTAKMDDNTVVAVQKFQKDNKLYPSGILD 437 Query: 159 SSTLEAMN 166 +T + +N Sbjct: 438 ITTQKKLN 445 >gi|23100367|ref|NP_693834.1| N-acetylmuramoyl-L-alanine amidase [Oceanobacillus iheyensis HTE831] gi|22778600|dbj|BAC14868.1| N-acetylmuramoyl-L-alanine amidase [Oceanobacillus iheyensis HTE831] Length = 938 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 10/87 (11%) Query: 79 EKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 E+ +A +++ S + LG+ ++ ++E+L G + F + Sbjct: 260 ERTLAKLEELASTDVF--------ELGDRHNAIIIIKEKLNAIGF--GGISETNYFGGWT 309 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAM 165 E+ VK FQ +GL G V +T E + Sbjct: 310 ETRVKQFQQYYGLSVDGKVGPATQETL 336 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 E+ PL G S V ++E L G +S F + E+ +K FQ + L SG Sbjct: 685 EIYNSPLQKGKSDSRVIEMKEMLNALGY--DGITISDYFGNWTETRLKQFQSDYNLPVSG 742 Query: 156 MVDSSTLEAMNVPV 169 + D+ T++ ++ V Sbjct: 743 IADTKTIQKLDDSV 756 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + P G + ++E+L G ++ F Y+ES VK FQ GL +G Sbjct: 199 SVYNSPFQNGKRHEDTKAIKEKLNSIGY--GPITVTTLFGNYMESQVKEFQRDQGLRVNG 256 Query: 156 MVDSSTLEAM 165 + D TL + Sbjct: 257 IADERTLAKL 266 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 E+ P G L+E+L G +S + Y +S VK FQ GL +G Sbjct: 477 EVYNSPFQAGKRHEDTIELKEKLNRLGY--GHITVSTLYGNYTKSQVKEFQRDFGLVVNG 534 Query: 156 MVDSSTLEAMN 166 + D +T +N Sbjct: 535 IADENTWIKLN 545 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + P G + ++E+L G ++ F Y+ES VK FQ GL +G Sbjct: 338 SVYNSPFQNGKRHEDTKAIKEKLNSIGY--GPITVTTLFGNYMESQVKEFQRDQGLRENG 395 Query: 156 MVDSSTLEAM 165 + D+ TL + Sbjct: 396 IADAPTLAKL 405 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 ++ P G L+E+L G +S + ++ ES VK FQ +GL +G Sbjct: 616 DVYNSPYQNGKRHDGTIELKEKLNRIGF--GYITVSTLYGSFTESQVKKFQEYYGLKVNG 673 Query: 156 MVDSSTLEAMN 166 + D T++ +N Sbjct: 674 IADEVTMDMIN 684 Score = 44.1 bits (103), Expect = 0.045, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 54/157 (34%), Gaps = 18/157 (11%) Query: 30 PIHASVLDEIINESYHSIVNDR----FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 + LDE+ N + + L R+ G + + T +Q ++ + Sbjct: 469 EATQNKLDEVYNSPFQAGKRHEDTIELKEKLNRLGYGHITVSTLYGNYTKSQVKEFQRDF 528 Query: 86 ----QDILSRGGWPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 I W +L LG+ + ++++L G + F + Sbjct: 529 GLVVNGIADENTWIKLNEVYYKTGFQLGDRHEDIIEIKKQLNAIGF--GGITETNYFGKW 586 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAM----NVPVD 170 E+ V+ FQ +GL +G D T + + N P Sbjct: 587 TETRVEQFQRYYGLSVTGTADEQTQQKLSDVYNSPYQ 623 Score = 41.7 bits (97), Expect = 0.23, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 49/150 (32%), Gaps = 16/150 (10%) Query: 29 KPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPI----ISKETIAQTEKAIAF 84 P LD + N + + D + + PI + + K Sbjct: 329 GPATQETLDSVYNSPFQNGKRHE-DTKAIKEKLNSIGYGPITVTTLFGNYMESQVKEFQR 387 Query: 85 YQDILSRG--GWPEL-------PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 Q + G P L LG+ ++ ++++L G + F Sbjct: 388 DQGLRENGIADAPTLAKLEELASTDVFELGDRHSAIITIKQKLNAIGF--DRISETDYFG 445 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + E+ V+ FQ + L+ +G D +T + Sbjct: 446 GWTETRVRQFQEYYNLNVTGKADEATQNKL 475 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 P G+ + ++E+L G + F + E+ V FQ + L +G VD Sbjct: 135 PYEKGDRHEDLVEIKEKLNHIGF--DGITETDYFGNWTETRVTQFQTYYQLSVTGKVDQK 192 Query: 161 TLEAM 165 T+ + Sbjct: 193 TINKL 197 >gi|186685970|ref|YP_001869166.1| glycoside hydrolase family protein [Nostoc punctiforme PCC 73102] gi|186468422|gb|ACC84223.1| glycoside hydrolase, family 25 [Nostoc punctiforme PCC 73102] Length = 263 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+S + V++L+++L G + + F V++A+ FQ L G+V T Sbjct: 199 LQLGDSGLRVKQLQQQLKDIGLY--TDAIDGKFSESVKNAIVSFQTSKKLQADGIVGIKT 256 Query: 162 LEAM 165 A+ Sbjct: 257 WVAL 260 >gi|159898672|ref|YP_001544919.1| peptidoglycan binding domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159891711|gb|ABX04791.1| Peptidoglycan-binding domain 1 protein [Herpetosiphon aurantiacus ATCC 23779] Length = 306 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 5/161 (3%) Query: 5 LKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGID 64 +K F + S+ ++ I++ L G+ Sbjct: 1 MKALVWRIASFTLIFGITLGSIGSAQAFSAAFFHTISKGNRGTDVKAMQYLLNISADGVF 60 Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 S ++ + A I+ W L I + G++ +V+ ++ L Sbjct: 61 GSGTESSVKSFQSSRGLGAD--GIVGPNTWNAL-IVTVRRGDNGNAVKAVQTLLNAK--R 115 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + AF A ESAVK FQ GL G+V +T + + Sbjct: 116 NAGLTVDGAFGAGTESAVKSFQSHAGLSADGVVGPTTWKNL 156 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + GN V+ ++ L IS D F + ES+VK FQ GL G+V + Sbjct: 35 TISKGNRGTDVKAMQYLLNISAD--------GVFGSGTESSVKSFQSSRGLGADGIVGPN 86 Query: 161 TLEAMNVPV-------DLRIRQLQVNLMR 182 T A+ V V ++ Q +N R Sbjct: 87 TWNALIVTVRRGDNGNAVKAVQTLLNAKR 115 >gi|56413653|ref|YP_150728.1| LysM domain-containing protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362577|ref|YP_002142214.1| LysM domain [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127910|gb|AAV77416.1| putative LysM domain [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094054|emb|CAR59552.1| putative LysM domain [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 333 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L V+VN+ L G+ + +G +TP++ +RI + + NP W Sbjct: 88 MLLPDAPREGVIVNLAELRLYYYPPGENRVQVYPIGIGLQGLETPVMDTRIGQKIPNPMW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + + G Sbjct: 148 TPTAGIRQRSL------------ERGITL---------PPVI--------------PAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|328884589|emb|CCA57828.1| putative lipoprotein [Streptomyces venezuelae ATCC 10712] Length = 339 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 4/126 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL-E 163 G+ + V+ L+ RL G D + + + ++VK FQ + GL +G VD++T Sbjct: 137 GDETEQVRELQARLRQLGHFDRAP--TGFYGTMTAASVKAFQKKQGLPRTGSVDATTWER 194 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 + +L+ + + + + R + ++ + +L + +GKV V G Sbjct: 195 LLGASRKPTADELKPSTTNKLDTPDARCLTGRVLCISKESRTLAWMIDGKVVSSMDVRFG 254 Query: 223 RVDRQT 228 + T Sbjct: 255 SENTPT 260 >gi|297204538|ref|ZP_06921935.1| predicted protein [Streptomyces sviceus ATCC 29083] gi|297148725|gb|EFH29093.1| predicted protein [Streptomyces sviceus ATCC 29083] Length = 509 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G V L+ LI G + G F A SAV+ FQ HGL G V ++T Sbjct: 113 LVQGAKGGCVTELQRLLIHHGYVVDVDGD---FGAGTASAVRSFQSAHGLTVDGQVGTNT 169 Query: 162 LEAM 165 A+ Sbjct: 170 KRAL 173 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 3/61 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S V L+ L G S + +F +AVK FQ GL G V +T A Sbjct: 198 GQSGGCVATLQSLLNGKGH---SLDVDGSFGPQTLAAVKAFQSASGLSADGEVGPNTKAA 254 Query: 165 M 165 + Sbjct: 255 L 255 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 3/61 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S V L+ L G + F +SAV+ FQ GL G V +T A Sbjct: 285 GQHSGCVTELQSLLNHHG---ADLAVDGDFGPLTDSAVRDFQSEKGLSVDGQVGPNTKAA 341 Query: 165 M 165 + Sbjct: 342 L 342 >gi|289579414|ref|YP_003478041.1| carboxyl-terminal protease [Thermoanaerobacter italicus Ab9] gi|289529127|gb|ADD03479.1| carboxyl-terminal protease [Thermoanaerobacter italicus Ab9] Length = 456 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 35/180 (19%) Query: 3 GYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG 62 YL K + ++ I + + ++ E Sbjct: 272 SYLNNPKYRLAVLINGNTASAAEILAGAIQDTKVGILVGEKSFG-------------KGT 318 Query: 63 IDSDIPIISKETIAQTEKAIAFY-----QDILSRGGWPELPI------------RPLHLG 105 + S +P+ T IA Y + I +G P++ + L +G Sbjct: 319 VQSVVPLPDGSGFKLT---IARYKLPSGRYIDKQGLKPDIYVASTQYTPSIKFNGTLKVG 375 Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + V+ L++ L I + F +AVK Q + GL P+G+ D +T +AM Sbjct: 376 SKGNDVKILQKHLNILKF--NAGPEDGIFGPKTANAVKKLQKKAGLTPTGVFDKNTYDAM 433 >gi|284034144|ref|YP_003384075.1| Zinc D-Ala-D-Ala carboxypeptidase [Kribbella flavida DSM 17836] gi|283813437|gb|ADB35276.1| Zinc D-Ala-D-Ala carboxypeptidase [Kribbella flavida DSM 17836] Length = 255 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G S V++L+ R+ AF ++AV FQ +GL G+ Sbjct: 48 SRTLSEGASGEDVRQLQVRVAGYPGYGGHLAADGAFGPATKAAVTRFQQAYGLAADGIAG 107 Query: 159 SSTLEAM 165 S+T + Sbjct: 108 SATFSKL 114 >gi|320157464|ref|YP_004189843.1| general secretion pathway protein A/General secretion pathway protein B [Vibrio vulnificus MO6-24/O] gi|319932776|gb|ADV87640.1| general secretion pathway protein A / General secretion pathway protein B [Vibrio vulnificus MO6-24/O] Length = 718 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L LG ++ L + L + L+ + F+A + V+ FQ + Sbjct: 456 WPMPLRETLRLGMHGEAIAVLDQLLAKA--LNDEPLKTTQFNAELMQRVEWFQRWQAMTE 513 Query: 154 SGMVDSSTLEAM 165 G+ TL + Sbjct: 514 DGIAGQRTLARL 525 >gi|311279432|ref|YP_003941663.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] gi|308748627|gb|ADO48379.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] Length = 333 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 40/163 (24%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + + ++VN+ L +G+ + +G++ TP + +R+ + + NP W Sbjct: 88 LLLPDVPRKGIVVNLAELRLYYFPPDGRSVQVYPLGIGQLGLATPEMTTRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + E+G + G Sbjct: 148 TPTPGIRQRSL--------------------ERGVSLPPVV---------------PAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 N + + + Y +H T P +V +SGC+R+ Sbjct: 173 NNPLGRYALRLAYGSGEYLIHGTNAPS---SVGLRVSSGCMRM 212 >gi|116747924|ref|YP_844611.1| ErfK/YbiS/YcfS/YnhG family protein [Syntrophobacter fumaroxidans MPOB] gi|116696988|gb|ABK16176.1| ErfK/YbiS/YcfS/YnhG family protein [Syntrophobacter fumaroxidans MPOB] Length = 321 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 63/216 (29%), Gaps = 56/216 (25%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVEN-GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + R +++N+P + + G + +G ++PI I NP W Sbjct: 102 WVLPPTQHRQLVINVPELRIYFFDKSGNAVQTYPIGIGDEGWESPIGTFSITEKRPNPTW 161 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 IP S+ +K MA + PG Sbjct: 162 YIPASLQEKYGMAQM-----------------------------------------PPGP 180 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N + Y +H T P V R + GC+R + + + + Sbjct: 181 ENPLGE--FMMKFSAGAYGVHGTAMPW---GVGRLVSHGCIRC-YPEHIRILYPQVPVGY 234 Query: 364 SRYHIEEVVKTR-KTTPV------KLATEVPVHFVY 392 I E +K K V + ++P + Y Sbjct: 235 KLEMIYEPIKFGQKNGQVFVEAHPDVYRKIPDYIQY 270 >gi|169634237|ref|YP_001707973.1| putative phage-related cell wall hydrolase [Acinetobacter baumannii SDF] gi|169153029|emb|CAP02090.1| putative phage-related cell wall hydrolase [Acinetobacter baumannii] Length = 276 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+ +V L+ +L G + + F E AV FQ + GL G V Sbjct: 3 LKFGSKGTAVVTLQRQLAGMGYKGKTGKVLSIDGIFGESTEYAVIQFQKKVGLVADGKVG 62 Query: 159 SSTLEAM 165 T EA+ Sbjct: 63 DKTREAL 69 >gi|192361798|ref|YP_001981559.1| general secretion pathway protein a [Cellvibrio japonicus Ueda107] gi|190687963|gb|ACE85641.1| general secretion pathway protein a [Cellvibrio japonicus Ueda107] Length = 587 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L LG+ V + E+ D P+ + +++ V+LFQ H + P G+ Sbjct: 491 GVLQLGDQGPLVTWVAEQFARL-DKQPAPLTRQYYTDKLKTRVELFQASHKMVPDGIFGV 549 Query: 160 STLEAMN 166 TL +N Sbjct: 550 QTLRRLN 556 >gi|23752338|ref|NP_705653.1| gp27 [Burkholderia phage Bcep781] gi|47842850|ref|NP_958132.2| gp27 [Burkholderia phage Bcep43] gi|23507205|gb|AAN38028.1| gp27 [Burkholderia phage Bcep781] gi|47719038|gb|AAR89318.2| gp27 [Burkholderia phage Bcep43] Length = 255 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 PL +G S +V L+ RL + S FDA V +A++ +Q HG+ P G+ Sbjct: 2 AAPLIVGASGRAVVFLQARLGL--------AQSGQFDASVATALRQWQEAHGMTPDGVYG 53 Query: 159 SSTLEAM 165 S T M Sbjct: 54 SQTNAVM 60 >gi|20807964|ref|NP_623135.1| peptidoglycan-binding domain-containing protein [Thermoanaerobacter tengcongensis MB4] gi|20516536|gb|AAM24739.1| putative peptidoglycan-binding domain-containing protein [Thermoanaerobacter tengcongensis MB4] Length = 77 Score = 52.9 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 EL R L+ G + V L+ L G + F + AV FQ +GL Sbjct: 4 QELGSRLLYEGLAGYDVLELQMILQSLGY--DPGPIDGIFGPRTKKAVMKFQRDNGLKVD 61 Query: 155 GMVDSSTLE 163 G+V T++ Sbjct: 62 GIVGPETMK 70 >gi|315644947|ref|ZP_07898075.1| spore cortex-lytic enzyme [Paenibacillus vortex V453] gi|315279658|gb|EFU42960.1| spore cortex-lytic enzyme [Paenibacillus vortex V453] Length = 197 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ + V L+ RL ++ L + A ++AV FQ +G+ G+ + T Sbjct: 14 LKPGSENGDVWDLQYRLKTLDFY--TQPLDGKYGANTKAAVTRFQKEYGVPADGITGAQT 71 Query: 162 LEAM 165 + Sbjct: 72 WRQL 75 >gi|256752603|ref|ZP_05493457.1| SpoIID/LytB domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256748541|gb|EEU61591.1| SpoIID/LytB domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 487 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P R + G++ V+ L+ L G +K ++ +D +AV FQ + L Sbjct: 28 PSGFSRNMKKGDTGDDVKLLQTLLKEIGYY--TKDITGTYDDNTLNAVMDFQKYYSLAVD 85 Query: 155 GMVDSSTL 162 G+ +T+ Sbjct: 86 GIAGINTI 93 >gi|290960881|ref|YP_003492063.1| peptidodoglycan-binding membrane protein [Streptomyces scabiei 87.22] gi|260650407|emb|CBG73523.1| putative peptidodoglycan-binding membrane protein [Streptomyces scabiei 87.22] Length = 379 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS----G 155 + L G+ V L+ RL G + +D+ VE AV ++Q G+ G Sbjct: 305 KTLRPGDDDPEVTELQLRLSQLGIYTG--DIDDNYDSQVEQAVLVYQSSRGITKDQDEPG 362 Query: 156 MVDSSTLEAM 165 + T E + Sbjct: 363 VYGLVTRERL 372 >gi|188993173|ref|YP_001905183.1| hypothetical protein xccb100_3778 [Xanthomonas campestris pv. campestris str. B100] gi|167734933|emb|CAP53145.1| Conserved hypothetical protein [Xanthomonas campestris pv. campestris] Length = 632 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 18/37 (48%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 A+ AVK FQ HGL G+V TL+A+ Sbjct: 463 NADGAYGQRTGEAVKAFQRAHGLQEDGVVGGDTLKAL 499 >gi|114707493|ref|ZP_01440389.1| N-acetylmuramoyl-L-alanine amidase [Fulvimarina pelagi HTCC2506] gi|114537052|gb|EAU40180.1| N-acetylmuramoyl-L-alanine amidase [Fulvimarina pelagi HTCC2506] Length = 258 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 31/92 (33%), Gaps = 7/92 (7%) Query: 80 KAIAFYQDILSRGGWPELPIRP---LHLGNSSVSVQRLRERLIISGDLDPSK---GLSVA 133 A A Y+ +L R P L L G V R L I D A Sbjct: 128 DATAEYKGLLGRAA-PVLDAMADEILERGERGPDVAAWRRDLDIWRDRIAHPWGMPDGDA 186 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 FD VE A FQ G+ G V T E M Sbjct: 187 FDHTVELATLHFQKTRGIVADGKVGPQTREEM 218 >gi|37678756|ref|NP_933365.1| putative general secretion pathway protein A [Vibrio vulnificus YJ016] gi|37197497|dbj|BAC93336.1| putative general secretion pathway protein A [Vibrio vulnificus YJ016] Length = 718 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 2/72 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L LG ++ L + L + L+ + F+A + V+ FQ + Sbjct: 456 WPMPLRETLRLGMHGEAIAVLDQLLAKA--LNDEPLKTTQFNAELMQRVEWFQRWQAMTE 513 Query: 154 SGMVDSSTLEAM 165 G+ TL + Sbjct: 514 DGIAGQRTLARL 525 >gi|118579012|ref|YP_900262.1| ErfK/YbiS/YcfS/YnhG family protein [Pelobacter propionicus DSM 2379] gi|118501722|gb|ABK98204.1| ErfK/YbiS/YcfS/YnhG family protein [Pelobacter propionicus DSM 2379] Length = 441 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 61/178 (34%) Query: 184 KKLLE-----QKMGLRYVLVNIPAASLEAVENG---KVGLRSTVIVGRVDRQTPILHSRI 235 + LL + +++N+ L + +V V VG DR TP +R+ Sbjct: 109 RILLPLSFILPDAPRKGIVINLATMRLFHYKGSGTAQVVSTYPVGVGAEDRPTPPGPTRV 168 Query: 236 NRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN 295 R P W +P SI + + + ++ + Sbjct: 169 VRKAAKPTWHVPASIA---------------ERHRMK------GDILPASI--------- 198 Query: 296 FIFRQDPGKINAMASTKIEFYSRNNTY-------MHDTPEPILFNNVVRFETSGCVRV 346 PG N + Y +H T +P +V T+GC+R+ Sbjct: 199 -----PPGPDNPLG--------EYALYLGKAGYLIHGTNKP---ASVGLQATNGCMRL 240 >gi|309811331|ref|ZP_07705118.1| NlpC/P60 family protein [Dermacoccus sp. Ellin185] gi|308434638|gb|EFP58483.1| NlpC/P60 family protein [Dermacoccus sp. Ellin185] Length = 350 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 8/64 (12%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V+ ++ +L ++ D F SAVK FQ +GL G+V T Sbjct: 53 LFFGSRGEAVKAIQAQLQVNAD--------GIFGPATLSAVKSFQRSNGLYADGIVGKLT 104 Query: 162 LEAM 165 + Sbjct: 105 WAKL 108 Score = 43.3 bits (101), Expect = 0.083, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 8/65 (12%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G++ V+ L+ ++ + + F + V FQ ++GL G+V Sbjct: 138 TLRFGSTHALVKVLQSKVGVE--------VDGIFGRATRAGVVSFQAQNGLYADGIVGKL 189 Query: 161 TLEAM 165 T + Sbjct: 190 TWSKL 194 >gi|255525876|ref|ZP_05392804.1| SpoIID/LytB domain protein [Clostridium carboxidivorans P7] gi|296185117|ref|ZP_06853527.1| SpoIID/LytB domain protein [Clostridium carboxidivorans P7] gi|255510440|gb|EET86752.1| SpoIID/LytB domain protein [Clostridium carboxidivorans P7] gi|296049951|gb|EFG89375.1| SpoIID/LytB domain protein [Clostridium carboxidivorans P7] Length = 858 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + PL+LG + V L+ LI G + F + +SAV FQ G+ +G Sbjct: 777 IAALPLNLGMTGSDVISLQNALIKLGY--NISSATGYFGSQTKSAVIAFQTSAGIPATGT 834 Query: 157 VDSSTLEAMN 166 V + T ++N Sbjct: 835 VGTWTYSSLN 844 >gi|117621302|ref|YP_858233.1| general secretion pathway protein A [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562709|gb|ABK39657.1| general secretion pathway protein A [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 525 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSS--VSVQRLRE 116 V++G D +I ++ + ++ Y W +GN++ VQ L Sbjct: 378 VNLGPDKANLLIGNQSWQVDRQWLSDYWGGSYTLLWRMPKGGVTLIGNNAGPSQVQWLDN 437 Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 L + L FDA +++ ++ FQ GL+P G+ S+TL +NV + +L Sbjct: 438 ALSRA--LQQPDRKVRRFDAELKTKLQQFQRAQGLNPDGIAGSNTLLRLNVMAGEPMPKL 495 Query: 177 QVNLMR 182 + R Sbjct: 496 EDPAQR 501 >gi|300780168|ref|ZP_07090024.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium genitalium ATCC 33030] gi|300534278|gb|EFK55337.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium genitalium ATCC 33030] Length = 386 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 18/130 (13%) Query: 52 FDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH-----LG- 105 F+ + + S ++ + +AQT KA + IL G E+ +R L LG Sbjct: 24 FEGDVGEWNRRSFSQAEMLFDDELAQTLKAFQQSRGILPSGDIDEITLRELRHASYTLGA 83 Query: 106 ----------NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 V +L+++L G + F +A++ +Q+ +G+ G Sbjct: 84 RVLSYQPSQIMVGDDVGQLQKQLQELGFYSG--RVDGHFGPDTHAALQDYQINYGIQDDG 141 Query: 156 MVDSSTLEAM 165 + T+ A+ Sbjct: 142 ICGPETMHAL 151 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 12/73 (16%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGL------------SVAFDAYVESAVKLFQMRHGLD 152 G+SS V +R L G L +G + FD + +K FQ G+ Sbjct: 2 GDSSARVAEVRSTLARLGLLPGFEGDVGEWNRRSFSQAEMLFDDELAQTLKAFQQSRGIL 61 Query: 153 PSGMVDSSTLEAM 165 PSG +D TL + Sbjct: 62 PSGDIDEITLREL 74 >gi|302553257|ref|ZP_07305599.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302470875|gb|EFL33968.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length = 259 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%) Query: 92 GGWPELPIRPLHL----GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W R L GN+ V + L+ L P + F + E AV+ Q Sbjct: 182 GRWYAGNSRTLKAVLATGNAGPEVAE-AQCLLREAGLSPGA-VDGIFGPHTEQAVRELQK 239 Query: 148 RHGLDPSGMVDSSTLEAM 165 R GL G++ T +A+ Sbjct: 240 RSGLVVDGIIGPHTWKAL 257 >gi|209516749|ref|ZP_03265601.1| Peptidoglycan-binding domain 1 protein [Burkholderia sp. H160] gi|209502866|gb|EEA02870.1| Peptidoglycan-binding domain 1 protein [Burkholderia sp. H160] Length = 272 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ V+ ++ L +G + + +AV +Q GL P G+ T Sbjct: 6 LQQGDTGDDVKTWQQCLARNGFNPGE--IDGVYGQATVAAVIAYQKSEGLLPDGVAGPRT 63 Query: 162 LEAM 165 L A+ Sbjct: 64 LLAL 67 >gi|295314766|gb|ADF97533.1| PlyM8 [uncultured phage] Length = 357 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L L ++ +V+ L+ L +G L + F E+AVK FQ +GL G+ + + Sbjct: 218 LLLDDTGAAVKTLQSELKQAGFL---LSVGGIFGKGTETAVKAFQRANGLAVDGVFGTGS 274 Query: 162 LEAMN 166 +N Sbjct: 275 QAKLN 279 >gi|242373732|ref|ZP_04819306.1| S41A family carboxy-terminal peptidase [Staphylococcus epidermidis M23864:W1] gi|242348552|gb|EES40154.1| S41A family carboxy-terminal peptidase [Staphylococcus epidermidis M23864:W1] Length = 526 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + LG+ + +V+ ++ L G S FD+ +ESA+K FQ + LD +G D Sbjct: 440 KTYQLGDDNKNVKTMKIGLTALGY--KVDNESNKFDSDLESAIKSFQRDNHLDVTGQFDK 497 Query: 160 ST 161 T Sbjct: 498 KT 499 >gi|302558839|ref|ZP_07311181.1| peptidoglycan binding domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302476457|gb|EFL39550.1| peptidoglycan binding domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 278 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 52/144 (36%), Gaps = 25/144 (17%) Query: 98 PIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 P R L G+S ++ L+ RL + +G + +D AV+ FQ + GL +G+ Sbjct: 68 PARVLWSPGDSGRDIRELQARLRQVAWI--FQGPTGTYDEPTAEAVRGFQGKRGLPRTGV 125 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLM--RIKKLL----EQKMGL------RYVLVNIPAAS 204 DS T R L + R + L R + ++ + + Sbjct: 126 TDSVTWR----------RLLDMTHEPGRWELYLMGGQPADAPDPRCGTGRVLCISKSSRT 175 Query: 205 LEAVENGKVGLRSTVIVGRVDRQT 228 L + +G+ V G T Sbjct: 176 LRWMIDGRTVSTMAVRFGSEYTPT 199 >gi|227834354|ref|YP_002836061.1| putative hydrolase [Corynebacterium aurimucosum ATCC 700975] gi|262183086|ref|ZP_06042507.1| putative hydrolase [Corynebacterium aurimucosum ATCC 700975] gi|227455370|gb|ACP34123.1| putative hydrolase [Corynebacterium aurimucosum ATCC 700975] Length = 394 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 12/78 (15%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGL------------SVAFDAYVESAVKLFQM 147 R L +G+ SV V R L G + +G FD+ + +K FQ Sbjct: 3 RVLRVGDQSVRVAEARATLARLGLMTDYQGTLSDWKKQKYSEADKHFDSELAEVLKAFQQ 62 Query: 148 RHGLDPSGMVDSSTLEAM 165 G+ PSG +D TL + Sbjct: 63 SRGIVPSGDIDELTLREL 80 Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 7/84 (8%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL---MRIKKLLEQK 190 F A +A+ +Q+ GL G+ T+ A+N+ N+ R++ Q Sbjct: 126 FGARTYAALAEYQLNSGLRSDGICGPETINALNLLGRRITGGSAHNIQERERVRNAGPQL 185 Query: 191 MGLRYVLVNIPAASLEAVENGKVG 214 G R V+ SL G+ Sbjct: 186 AGKRVVI----DPSLGGFNKGRTV 205 >gi|22218341|ref|NP_671724.1| matrix metalloproteinase-21 preproprotein [Homo sapiens] gi|317373390|sp|Q8N119|MMP21_HUMAN RecName: Full=Matrix metalloproteinase-21; Short=MMP-21; Flags: Precursor gi|22134532|gb|AAM92903.1|AF331526_1 putative matrix metalloproteinase [Homo sapiens] gi|55661689|emb|CAH73211.1| matrix metallopeptidase 21 [Homo sapiens] gi|55959618|emb|CAI12086.1| matrix metallopeptidase 21 [Homo sapiens] gi|162318546|gb|AAI56369.1| Matrix metallopeptidase 21 [synthetic construct] gi|225000648|gb|AAI72493.1| Matrix metallopeptidase 21 [synthetic construct] Length = 569 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 41/126 (32%), Gaps = 25/126 (19%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL 102 + + ++ D P+ + IA A Q LSR GW + Sbjct: 15 WLAAPWPTQPESLFHSRDRSDLEPSPLRQAKPIADLHAA----QRFLSRYGWSGVWA--- 67 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + A + AV+ FQ + L SG +D++TL Sbjct: 68 -----------------AWGPSPEGPPETPK-GAALAEAVRRFQRANALPASGELDAATL 109 Query: 163 EAMNVP 168 AMN P Sbjct: 110 AAMNRP 115 >gi|21693575|gb|AAM75352.1|AF520613_1 matrix metalloproteinase-21 [Homo sapiens] gi|21928002|gb|AAM78033.1| MMP21 protein [Homo sapiens] gi|58003496|gb|AAW62254.1| matrix metalloproteinase 21 [Homo sapiens] Length = 569 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 41/126 (32%), Gaps = 25/126 (19%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL 102 + + ++ D P+ + IA A Q LSR GW + Sbjct: 15 WLAAPWPTQPESLFHSRDRSDLEPSPLRQAKPIADLHAA----QRFLSRYGWSGVWA--- 67 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + A + AV+ FQ + L SG +D++TL Sbjct: 68 -----------------AWGPSPEGPPETPK-GAALAEAVRRFQRANALPASGELDAATL 109 Query: 163 EAMNVP 168 AMN P Sbjct: 110 AAMNRP 115 >gi|182435141|ref|YP_001822860.1| putative amidase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463657|dbj|BAG18177.1| putative amidase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 519 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V+ ++ L G + S F + AV+ FQ L+ G V T A Sbjct: 387 GSTGPQVKAVQTLLNAQGYQAGAADGS--FGPTTKGAVQAFQRARALEADGTVGPKTWTA 444 Query: 165 M 165 + Sbjct: 445 L 445 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 11/95 (11%) Query: 80 KAIAFYQDILSRGG-----WPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 +A + + + G W L L G S +V+RL+ L + L + G Sbjct: 423 QAFQRARALEADGTVGPKTWTALLSAGTTPALAKGASGDAVKRLQRALTAA--LGTTVGA 480 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +F E+AV+ +Q L G V +T A+ Sbjct: 481 DGSFGPATETAVRTYQTGRKLSVDGKVGPATWGAL 515 >gi|326775778|ref|ZP_08235043.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Streptomyces cf. griseus XylebKG-1] gi|326656111|gb|EGE40957.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Streptomyces cf. griseus XylebKG-1] Length = 519 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V+ ++ L G + S F + AV+ FQ L+ G V T A Sbjct: 387 GSTGPQVKAVQTLLNAQGYQAGAADGS--FGPTTKGAVQAFQRARALEADGTVGPKTWTA 444 Query: 165 M 165 + Sbjct: 445 L 445 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 11/95 (11%) Query: 80 KAIAFYQDILSRGG-----WPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 +A + + + G W L L G S +V+RL+ L + L + G Sbjct: 423 QAFQRARALEADGTVGPKTWTALLSAGTTPALAKGASGDAVKRLQRALTAA--LGTTVGA 480 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +F E+AV+ +Q L G V +T + Sbjct: 481 DGSFGPATETAVRTYQTGRKLSVDGKVGPATWGGL 515 >gi|169335886|ref|ZP_02863079.1| hypothetical protein ANASTE_02319 [Anaerofustis stercorihominis DSM 17244] gi|169258624|gb|EDS72590.1| hypothetical protein ANASTE_02319 [Anaerofustis stercorihominis DSM 17244] Length = 214 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 +Y+ + + GG P + G+ V++ + RLI G + G F + E+AVK Sbjct: 135 YYRSVRTFGGSPA-YYPIIAKGSRGAYVKKAQNRLIKKGYKISADG---IFGSSTENAVK 190 Query: 144 LFQMRHGLDPSGMVDSSTLEAM 165 FQ + + G+V +T + + Sbjct: 191 RFQKKSEITVDGIVGKNTWKLL 212 >gi|227497955|ref|ZP_03928135.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] gi|226832613|gb|EEH64996.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] Length = 621 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 8/83 (9%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 GW L G + V V+ +++RL IS + + ++AV+ FQ R GL Sbjct: 395 GW---ATNELTPGMNGVKVRIVQQRLGIS-----NGSALATANGTFQNAVRNFQRRAGLP 446 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQ 175 +G+VD T AM + Q Sbjct: 447 QTGVVDQQTWNAMGTGFSWWVDQ 469 >gi|154705804|ref|YP_001423831.1| hypothetical protein CBUD_0411 [Coxiella burnetii Dugway 5J108-111] gi|154355090|gb|ABS76552.1| hypothetical exported protein [Coxiella burnetii Dugway 5J108-111] Length = 314 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 61/177 (34%), Gaps = 44/177 (24%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGL-RSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + +++N+ A L GK V +GR + TP+ I + + NP WV+P Sbjct: 89 PPVPKEGIVINLAAMRLYYFPKGKNYFYTYPVGIGRFNWSTPLGKLHIIQKIKNPVWVVP 148 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 S+++ E G V G N Sbjct: 149 DSVLRY--------------------RQENGDPVPKMM---------------PSGPENP 173 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 + + TY +H T +P +V R ++GC+ + +I L + DTP Sbjct: 174 LGYYALRLSQP--TYLIHGTNDPS---SVGRRSSAGCIHLYPEDIKALFGMVSVDTP 225 >gi|329121069|ref|ZP_08249700.1| cell wall hydrolase [Dialister micraerophilus DSM 19965] gi|327471231|gb|EGF16685.1| cell wall hydrolase [Dialister micraerophilus DSM 19965] Length = 248 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +GNS V+ ++ +L+ G + + E+AV++FQ R L G++ T Sbjct: 26 YKIGNSGEIVKLIQRKLVKQG---IKIEIDGKYGKDTENAVRIFQKRKKLKVDGIIGEET 82 Query: 162 LEAM 165 A+ Sbjct: 83 YFAL 86 >gi|313891875|ref|ZP_07825480.1| NlpC/P60 family protein [Dialister microaerophilus UPII 345-E] gi|313119869|gb|EFR43056.1| NlpC/P60 family protein [Dialister microaerophilus UPII 345-E] Length = 251 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +GNS V+ ++ +L+ G + + E+AV++FQ R L G++ T Sbjct: 26 YKIGNSGEIVKLIQRKLVKQG---IKIEIDGKYGKDTENAVRIFQKRKKLKVDGIIGEET 82 Query: 162 LEAM 165 A+ Sbjct: 83 YFAL 86 >gi|220934928|ref|YP_002513827.1| hypothetical protein Tgr7_1758 [Thioalkalivibrio sp. HL-EbGR7] gi|219996238|gb|ACL72840.1| conserved hypothetical protein [Thioalkalivibrio sp. HL-EbGR7] Length = 424 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 42/165 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKV-GLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++ + + +++N+P L G+ + + +GR+D TP+ R+ + P Sbjct: 92 RRHILPRQHRSGIVINLPEMRLYDYTAGQDHIMTYAISIGRMDWSTPLGTLRVIQKTEQP 151 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI Q Y + P Sbjct: 152 TWTPPASIRQ-----------AYAAR------------------------GESLPAVVPP 176 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 G N + + + + Y +H T P +R T GC+R+ Sbjct: 177 GPDNPLGEFAMRLSNPS--YLIHGTNWPE--GIGMRA-THGCIRL 216 >gi|296333268|ref|ZP_06875721.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675228|ref|YP_003866900.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149466|gb|EFG90362.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413472|gb|ADM38591.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. spizizenii str. W23] Length = 250 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 7/77 (9%) Query: 96 ELPIRPLHLGN---SSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMR 148 LP + L + +V +L++ L + G+ + +AVK FQ+ Sbjct: 169 PLPSGVIKLTSPYRKGTNVLQLQKALAALHFYPDKGAKNNGIDGVYGPKTANAVKRFQLL 228 Query: 149 HGLDPSGMVDSSTLEAM 165 +GL G+ T + Sbjct: 229 NGLAADGIYGPKTKAKL 245 >gi|261404509|ref|YP_003240750.1| spore cortex-lytic enzyme [Paenibacillus sp. Y412MC10] gi|261280972|gb|ACX62943.1| spore cortex-lytic enzyme [Paenibacillus sp. Y412MC10] Length = 219 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ + V L+ RL ++ L + A ++AV FQ +G+ G+ + T Sbjct: 36 LKPGSENGDVWDLQYRLKTLDFY--TQPLDGKYGANTKAAVSRFQKEYGVPADGITGAQT 93 Query: 162 LEAM 165 + Sbjct: 94 WRQL 97 >gi|297158109|gb|ADI07821.1| hypothetical protein SBI_04701 [Streptomyces bingchenggensis BCW-1] Length = 207 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 47/134 (35%), Gaps = 20/134 (14%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G SS V+ L+ RL G + + + S+V +Q HGL +G VD T + Sbjct: 5 GTSSERVRELQARLRALGLF--GRNPTGYYGTVTRSSVLAYQRGHGLSATGSVDRRTWNS 62 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGL----------RYVLVNIPAASLEAVENGKVG 214 + R R + L R + ++ + +L + NGKV Sbjct: 63 L-RTATKRPT-------RDELYPPTTNPLAKPDPRCMTGRALCISKTSRTLAWMVNGKVV 114 Query: 215 LRSTVIVGRVDRQT 228 V G T Sbjct: 115 SAMDVRFGSQYTPT 128 >gi|270261600|ref|ZP_06189873.1| ErfK/YbiS/YcfS/YnhG family protein [Serratia odorifera 4Rx13] gi|270045084|gb|EFA18175.1| ErfK/YbiS/YcfS/YnhG family protein [Serratia odorifera 4Rx13] Length = 337 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 62/198 (31%), Gaps = 47/198 (23%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++VN+ L G+ + + +G+ TP+ + +++ + NP W +I ++ Sbjct: 100 IVVNLAELRLYYYPKGENKVIVYPIGIGQTGMHTPLQVTSVSQKIPNPTWTPTANIRKR- 158 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + G N M + Sbjct: 159 ----------------------------------YQAKGVTLPAVIPAGPENPMGLFAMR 184 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH-----I 368 + Y +H T F +R +SGC+R+ D+ L P +R + Sbjct: 185 LAMGHGEYLIHGTNAN--FGIGMR-VSSGCIRL-RPKDI-EALFNMVPRGTRVQVINDPV 239 Query: 369 EEVVKTRKTTPVKLATEV 386 + V+ V++ + Sbjct: 240 KISVEPDGKRYVEVHQPL 257 >gi|312200483|ref|YP_004020544.1| peptidoglycan-binding domain 1 protein [Frankia sp. EuI1c] gi|311231819|gb|ADP84674.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EuI1c] Length = 226 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 60/174 (34%), Gaps = 32/174 (18%) Query: 3 GYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIV----NDRFDNFLAR 58 G +IN + +V +L + +A ++ S N + +L+R Sbjct: 72 GLWQINMWAHSSWVGSR-----NLYDPATNAWAATQVCKGSGPGAWSTYSNGAYRAYLSR 126 Query: 59 -------VDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSV 111 V G S P+ + A A+Y + + +V Sbjct: 127 GYAAANAVSSGTVSAAPVSLAKAAPAVP-ANAWYLSQAANHS------------SYLDAV 173 Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++L+ +L G + + F + V+ +Q HGL G+V T +A+ Sbjct: 174 RQLQTKLSGLGY---TIAVDGYFGPQTDGVVRAYQGSHGLPADGVVGPQTHQAL 224 >gi|332971678|gb|EGK10626.1| carboxy-terminal processing protease [Desmospora sp. 8437] Length = 482 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 G P P + L +S V+ L+ L G + E+AVK FQ L Sbjct: 382 GATPPQPDKTLKRDMTSQQVKNLQLILEGLGY--RPDRTDGYYSEQTETAVKAFQRTQKL 439 Query: 152 DPSGMVDSST 161 +G+VDS T Sbjct: 440 SVTGVVDSKT 449 >gi|311032644|ref|ZP_07710734.1| putative cell wall endopeptidase [Bacillus sp. m3-13] Length = 215 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 EL + L G V+ L++ L G S+ + + AVK FQ +G+ +G Sbjct: 24 ELGDQTLKPGMYHEDVKELQKVLDDKGYFGYSETTTYYGEYT-TDAVKKFQADNGITVNG 82 Query: 156 MVDSSTLEAMNV 167 + T EA+ + Sbjct: 83 IAGEETFEALGI 94 >gi|329930802|ref|ZP_08284207.1| spore cortex-lytic enzyme [Paenibacillus sp. HGF5] gi|328934661|gb|EGG31164.1| spore cortex-lytic enzyme [Paenibacillus sp. HGF5] Length = 219 Score = 52.1 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ + V L+ RL ++ L + A ++AV FQ +G+ G+ + T Sbjct: 36 LKPGSENGDVWDLQYRLKTLDFY--TQPLDGKYGANTKAAVSRFQKEYGVPADGITGAQT 93 Query: 162 LEAM 165 + Sbjct: 94 WRQL 97 >gi|218708445|ref|YP_002416066.1| putative general secretion pathway protein A [Vibrio splendidus LGP32] gi|218321464|emb|CAV17416.1| putative general secretion pathway protein A [Vibrio splendidus LGP32] Length = 556 Score = 52.1 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 14/119 (11%) Query: 58 RVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRER 117 V++ ++ + ++ K+++ Q + Y I W + L G +V L Sbjct: 439 SVELLVNEKLLVMPKQSLEQIWQG--DYVAI-----WKQPLRETLKEGYQGEAVALLDL- 490 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 ++S L S FD ++ ++ FQ G+ G+ TL + R+ QL Sbjct: 491 -LLSEVLGEVVSGSDVFDYELKMKIEAFQTWQGMSVDGIAGKLTLARL-----QRLAQL 543 >gi|163839614|ref|YP_001624019.1| cell wall hydrolase [Renibacterium salmoninarum ATCC 33209] gi|162953090|gb|ABY22605.1| cell wall hydrolase [Renibacterium salmoninarum ATCC 33209] Length = 196 Score = 52.1 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G +S V RL++ L +G + + F +AVK +Q HGL G+V +T Sbjct: 85 IEKGQNSGCVTRLQQLLNNNG---AKRTVDGGFGDGTFTAVKSYQSAHGLSADGIVGPNT 141 Query: 162 LEAMNVPVD 170 A+ Sbjct: 142 KGALEGGPA 150 >gi|311696715|gb|ADP99588.1| ErfK/YbiS/YcfS/YnhG family protein [marine bacterium HP15] Length = 348 Score = 52.1 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 59/197 (29%), Gaps = 51/197 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 ++ + +++N+ L + V + V VG + +P+ + + + +P Sbjct: 104 RQYVLPDARREGIVINLAEYRLYYFTDEGVQV-YPVGVGTAENPSPLTDAEVTMPLESPA 162 Query: 244 WVIPRSI-----IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF 298 W P SI D + + Sbjct: 163 WYPPASIRAEYEASGDYLPRMI-------------------------------------- 184 Query: 299 RQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLK 358 PG N + + + S +H T + F + + GC R+ N D+ ++ + Sbjct: 185 --PPGPGNPLGTHALLL-SEKGYLIHGTNKK--FGVGM-PVSHGCFRMYN-EDISRFVYQ 237 Query: 359 DTPTWSRYHIEEVVKTR 375 + + VK Sbjct: 238 VEKGTPVQVVHDAVKIG 254 >gi|297545556|ref|YP_003677858.1| carboxyl-terminal protease [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843331|gb|ADH61847.1| carboxyl-terminal protease [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 456 Score = 52.1 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 35/180 (19%) Query: 3 GYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG 62 YL K + ++ I + + ++ E Sbjct: 272 SYLNNPKYRLAVLINGNTASAAEILAGAIQDTKVGILVGEKSFG-------------KGT 318 Query: 63 IDSDIPIISKETIAQTEKAIAFY-----QDILSRGGWPELPI------------RPLHLG 105 + S +P+ T IA Y + I +G P++ + L +G Sbjct: 319 VQSVVPLPDGSGFKLT---IARYKLPSGRYIDKQGLKPDIYVASTQYTPSIKFNGTLKVG 375 Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + V+ +++ L I + F +AVK Q + GL P+G+ D +T +AM Sbjct: 376 SKGNDVKIIQKHLNILKF--NAGPEDGIFGPKTANAVKKLQKKAGLTPTGVFDKNTYDAM 433 >gi|157693492|ref|YP_001487954.1| M15C subfamily peptidase [Bacillus pumilus SAFR-032] gi|157682250|gb|ABV63394.1| M15C subfamily peptidase [Bacillus pumilus SAFR-032] Length = 274 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDP-SKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 +PL G+ +VQ+ L D + G+ + +AVK FQ+ +GL G+ Sbjct: 201 TKPLTKGSQVTAVQKALSSLYFYPDKGAKNNGIDGYYGPKTANAVKRFQLMNGLAADGIY 260 Query: 158 DSSTLEAM 165 T M Sbjct: 261 GPKTRNKM 268 >gi|27364080|ref|NP_759608.1| general secretion pathway protein A [Vibrio vulnificus CMCP6] gi|27360198|gb|AAO09135.1| General secretion pathway protein A [Vibrio vulnificus CMCP6] Length = 718 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L LG +++ L + L + L+ ++ F+A + V+ FQ + Sbjct: 456 WPMPLRETLRLGMHGEAIEVLDQLLAKA--LNDEPLMTTQFNAELMQRVEWFQRWQAMTE 513 Query: 154 SGMVDSSTLEAM 165 G+ TL + Sbjct: 514 DGIAGQRTLARL 525 >gi|168052912|ref|XP_001778883.1| predicted protein [Physcomitrella patens subsp. patens] gi|162669752|gb|EDQ56333.1| predicted protein [Physcomitrella patens subsp. patens] Length = 648 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +S V L+ L G L L+ F + A++ FQ+ HG+ +G SS+ +A+ Sbjct: 206 DSGPQVLDLQRTLYWFGYLPNRTALTAYFGPETKKALQQFQIAHGVPATGAWGSSSRQAL 265 >gi|296102710|ref|YP_003612856.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057169|gb|ADF61907.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 337 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 56/172 (32%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L ++VN+ L G + + +G++ +TP+ +R+++ + NP W Sbjct: 89 MLLPDTPREGIVVNLAELRLYYYPPGGNIVQVFPLGIGQLGLETPVTTTRVSQKIPNPTW 148 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I + + + I + G Sbjct: 149 TPTPGIRARSL------------EQGIKL-----------------------PPVVPAGP 173 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 174 NNPLGRFALRLGVGNGEYLIHGTSAP---DSVGLRVSSGCMRMNAPDIKALF 222 >gi|238063101|ref|ZP_04607810.1| Muramoyl-pentapeptide carboxypeptidase [Micromonospora sp. ATCC 39149] gi|237884912|gb|EEP73740.1| Muramoyl-pentapeptide carboxypeptidase [Micromonospora sp. ATCC 39149] Length = 242 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L+ G S V++L+ R+ + +AV+ FQ +GL G+ Sbjct: 19 TRDLYEGRSGEDVRQLQIRVAGWAGRRDIVETDGNYGPKTAAAVRRFQSAYGLPADGIAG 78 Query: 159 SSTLEAM 165 T + Sbjct: 79 PQTYTKL 85 >gi|84394160|ref|ZP_00992892.1| putative general secretion pathway protein A [Vibrio splendidus 12B01] gi|84375219|gb|EAP92134.1| putative general secretion pathway protein A [Vibrio splendidus 12B01] Length = 556 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 7/83 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W + L G ++ L ++S L S FD ++ ++ FQM G+ Sbjct: 468 WKQPLRDTLKEGYQGEAIALLDL--LLSEVLGEDVSGSDVFDYELKMKIEAFQMWQGMSV 525 Query: 154 SGMVDSSTLEAMNVPVDLRIRQL 176 G+ TL + R+ QL Sbjct: 526 DGIAGKRTLARL-----QRLAQL 543 >gi|239929324|ref|ZP_04686277.1| lipoprotein [Streptomyces ghanaensis ATCC 14672] Length = 262 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 24/137 (17%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+S V+ L+ RL + L G + +D E AVK FQ + GL +G D+ T + Sbjct: 59 PGDSGRDVRELQARLRQAAWL--FHGPTGTYDGPTEEAVKGFQGKRGLPRTGRTDTVTWQ 116 Query: 164 AMNVPVDLRIRQLQVNLM--RIKKLL----EQKMGL------RYVLVNIPAASLEAVENG 211 R L + R + L R + ++ + +L + +G Sbjct: 117 ----------RLLGMTREPGRWELYLMGGQPADAPDARCRTGRVLCISKSSRTLRWMVDG 166 Query: 212 KVGLRSTVIVGRVDRQT 228 + V G T Sbjct: 167 RTVSTMPVRFGSEYTPT 183 >gi|198282692|ref|YP_002219013.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665455|ref|YP_002424884.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247213|gb|ACH82806.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517668|gb|ACK78254.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 347 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 40/152 (26%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+P L G+ V V + R P+ +RI + NP W +P++I ++ Sbjct: 98 IIINVPERRLFYFPPGQNVVYTYPVGIFRPKWPNPLGSTRIIAKVKNPTWTVPKNIQEE- 156 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ G N M +E Sbjct: 157 ----------------------------------HAKVGEPIPAFFPAGPDNPMGELALE 182 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + ++H T +P +R + GC V Sbjct: 183 -TGWSQIFIHGTNKPW--GVGMR-VSHGCFHV 210 >gi|52841825|ref|YP_095624.1| hypothetical protein lpg1595 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628936|gb|AAU27677.1| hypothetical protein lpg1595 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 244 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L + + V++N+ L + V + V +G+ +TP+ SRI NP Sbjct: 88 RFILP-NVPRKGVVINLAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRIISKEINP 146 Query: 243 YWV 245 W Sbjct: 147 TWR 149 >gi|80159841|ref|YP_398585.1| putative N-acetylmuramoyl-L-alanine amidase [Clostridium phage c-st] gi|78675431|dbj|BAE47853.1| putative N-acetylmuramoyl-L-alanine amidase [Clostridium phage c-st] Length = 309 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 14/98 (14%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L +G+ V++L+ L G + F ++AV FQ +GL G+V Sbjct: 173 SSGLLKVGSREDKVKQLQANLNKLGYTCGNADG--IFGQGTKNAVISFQRNNGLSADGVV 230 Query: 158 DSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 ST ++ NL +++ + + Y Sbjct: 231 GESTWN-----------KILSNLE-VRRFKPLPLKMIY 256 >gi|297160931|gb|ADI10643.1| hypothetical protein SBI_07523 [Streptomyces bingchenggensis BCW-1] Length = 433 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 6/67 (8%) Query: 102 LHLGNSSVSVQRLRERL-IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVD 158 L G+S V L++RL + L S G +D V +AV FQ +G++ G+ Sbjct: 363 LQEGDSGSEVVELQKRLGQLLLYLGSSDGE---YDDGVRNAVTSFQNTYGVEGDPKGVYG 419 Query: 159 SSTLEAM 165 +T A+ Sbjct: 420 PNTRRAL 426 >gi|153843209|ref|ZP_01993550.1| LysM domain protein [Vibrio parahaemolyticus AQ3810] gi|149745333|gb|EDM56584.1| LysM domain protein [Vibrio parahaemolyticus AQ3810] Length = 158 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 189 QKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 ++ + +++N+ L G+ V V +GR+ R TP++ + I++ NP W P Sbjct: 97 PEVPHQGIVINLAELRLYYFPEGEDVVHVFPVGIGRIGRDTPVMTTSISQKRPNPTWTPP 156 Query: 248 RS 249 S Sbjct: 157 AS 158 >gi|300856423|ref|YP_003781407.1| N-acetylmuramoyl-L-alanine amidase [Clostridium ljungdahlii DSM 13528] gi|300436538|gb|ADK16305.1| N-acetylmuramoyl-L-alanine amidase [Clostridium ljungdahlii DSM 13528] Length = 226 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 98 PIRPLH--LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P P+ G +V+ ++E+L+ G G F AVK FQ +GL G Sbjct: 155 PGYPIRMNPGLEDSNVKAVQEKLMSRGYSVGRCGADGFFGWGTLEAVKSFQRDNGLAVDG 214 Query: 156 MVDSSTLEAM 165 +V +T + Sbjct: 215 IVGVNTWNKL 224 >gi|298493144|ref|YP_003723321.1| peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] gi|298235062|gb|ADI66198.1| Peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] Length = 200 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 8/67 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G V+ ++ L I + + V+ FQ R+GL G+V ST Sbjct: 142 LRQGARGERVRVVQRALGI--------RVDGVYGPNTAYHVRNFQRRNGLLVDGIVGPST 193 Query: 162 LEAMNVP 168 A+ + Sbjct: 194 RRALGIS 200 >gi|162456928|ref|YP_001619295.1| hypothetical protein sce8645 [Sorangium cellulosum 'So ce 56'] gi|161167510|emb|CAN98815.1| hypothetical protein sce8645 [Sorangium cellulosum 'So ce 56'] Length = 483 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V+ L+E L GD + G +F +A+ Q GL +G+VD++T+ A Sbjct: 33 GAHGDGVRALQEALGTLGDAMKADG---SFGPKTHAAIVALQGAEGLPQTGIVDAATIAA 89 Query: 165 MNVPVDLRIRQ-LQVNLMRIKKLLEQK 190 ++ + R RQ L+ + R L ++ Sbjct: 90 LDRRLGARRRQPLEEAMARAAGLSPEE 116 >gi|229587283|ref|YP_002860321.1| LycA [Clostridium botulinum Ba4 str. 657] gi|229260176|gb|ACQ51213.1| LycA [Clostridium botulinum Ba4 str. 657] Length = 318 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++ LI G S G F +A+K FQ L G+V T Sbjct: 251 KQGARGGITKVIQQMLINIGYPVGSYGADGVFGDGTVTAIKAFQRDCHLVADGIVGKETW 310 Query: 163 EAM 165 +A+ Sbjct: 311 KAL 313 >gi|307610295|emb|CBW99859.1| hypothetical protein LPW_16201 [Legionella pneumophila 130b] Length = 241 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L + + V++N+ L + V + V +G+ +TP+ SRI NP Sbjct: 88 RFILP-NVPRKGVVINLAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRIISKEINP 146 Query: 243 YWV 245 W Sbjct: 147 TWR 149 >gi|308173925|ref|YP_003920630.1| carboxy-terminal processing protease [Bacillus amyloliquefaciens DSM 7] gi|307606789|emb|CBI43160.1| carboxy-terminal processing protease [Bacillus amyloliquefaciens DSM 7] gi|328553148|gb|AEB23640.1| carboxy-terminal processing protease [Bacillus amyloliquefaciens TA208] gi|328912078|gb|AEB63674.1| carboxy-terminal processing protease [Bacillus amyloliquefaciens LL3] Length = 468 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 9/104 (8%) Query: 79 EKAIA-FYQ-DILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 +K I YQ + P L + G+S +V ++ L G S ++ +D Sbjct: 354 KKGIEPQYQVKLPDYANLPYLDAEKTYQYGDSGTTVTNAQKMLEALGY---SVNVNGTYD 410 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 E AVK FQ + L +G++ T + + +QL N Sbjct: 411 KAFEQAVKQFQAKEKLKETGILTGDTTAKLMTDLQ---KQLADN 451 >gi|226942145|ref|YP_002797219.1| ErfK/YbiS/YcfS/YnhG family protein [Laribacter hongkongensis HLHK9] gi|226717072|gb|ACO76210.1| ErfK/YbiS/YcfS/YnhG family protein [Laribacter hongkongensis HLHK9] Length = 365 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 62/176 (35%), Gaps = 51/176 (28%) Query: 196 VLVNIPAASLEAV---ENGKV--GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 V+VN+ L G+ + V V + TP+ +R+ + +P W +PRSI Sbjct: 102 VVVNVAQRRLFYFPPAREGEPRKVITFPVGVAKEGWSTPLGSTRVTSKLRDPGWSVPRSI 161 Query: 251 -IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 +K+ +N + F PG N M Sbjct: 162 KAEKE------------AENGL-----------------------PFPDYVPPGPDNPMG 186 Query: 310 STKI--EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 I F + ++H T +P +R + GC+++ N L L K+TP Sbjct: 187 MLAIGTGFP---SIFIHATNKPW--GVGMRQ-SHGCIQLYPENAKLLFDTLPKNTP 236 >gi|154499164|ref|ZP_02037542.1| hypothetical protein BACCAP_03159 [Bacteroides capillosus ATCC 29799] gi|150272004|gb|EDM99230.1| hypothetical protein BACCAP_03159 [Bacteroides capillosus ATCC 29799] Length = 367 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + ++R LI G S G F+A + VK FQ GL G V TL Sbjct: 116 GDIGAAPTQIRGLLIKKGYNCASTGP---FNAELVGVVKKFQKDSGLTQDGSVGQVTLAV 172 Query: 165 MNVPVDL 171 + V Sbjct: 173 LENTVSD 179 Score = 44.4 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 100 RPLHLGN--SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + L + S +++L+ + ++G + Y E AV+ FQ GL SG+V Sbjct: 19 KKLQRDDVTKSEDIKQLQRAIYMAGFWSSPSEPDGVYGIYTECAVRGFQYEKGLQTSGVV 78 Query: 158 DSSTLEAM 165 D +TL + Sbjct: 79 DKATLSKL 86 >gi|169831666|ref|YP_001717648.1| ErfK/YbiS/YcfS/YnhG family protein [Candidatus Desulforudis audaxviator MP104C] gi|169638510|gb|ACA60016.1| ErfK/YbiS/YcfS/YnhG family protein [Candidatus Desulforudis audaxviator MP104C] Length = 307 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 17/126 (13%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST---LEA 164 V+ ++E+L +G ++ + +AV+ Q +G++PSG+VD+ T L Sbjct: 48 GNDVREVQEQLRAAGLF--QGPVNGVYGPITAAAVRSLQEANGIEPSGVVDAETWYLLAL 105 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 M+ PV + L G +++++ +L +ENG + VG+ Sbjct: 106 MSTPVKT------------SEPLPPPTGEVEIIIDVQKRTLTVMENGYPYKQFPCAVGKN 153 Query: 225 DRQTPI 230 + TP+ Sbjct: 154 ETPTPV 159 >gi|115375071|ref|ZP_01462340.1| negative regulator of beta-lactamase expression [Stigmatella aurantiaca DW4/3-1] gi|310825431|ref|YP_003957789.1| n-acetylmuramoyl-l-alanine amidase, family 2 [Stigmatella aurantiaca DW4/3-1] gi|115367909|gb|EAU66875.1| negative regulator of beta-lactamase expression [Stigmatella aurantiaca DW4/3-1] gi|309398503|gb|ADO75962.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Stigmatella aurantiaca DW4/3-1] Length = 280 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV--AFDAYVESAVKLFQMRHGLDPSG 155 P L G++ +V++L++ L+ +G + ++ + F E+AVK FQ L +G Sbjct: 29 PPAGLRRGDTGPNVKKLQDALVKTGYMTQAQVNTGYGTFGPKTEAAVKKFQADKKLPTTG 88 Query: 156 MVDSSTLEAM 165 T A+ Sbjct: 89 FYGDLTHAAL 98 >gi|307331938|ref|ZP_07611033.1| ErfK/YbiS/YcfS/YnhG family protein [Streptomyces violaceusniger Tu 4113] gi|306882412|gb|EFN13503.1| ErfK/YbiS/YcfS/YnhG family protein [Streptomyces violaceusniger Tu 4113] Length = 299 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 4/136 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + + +G S V+ L+ RL G + + + + +++V +Q HGL + Sbjct: 87 PRVAPPVIAVGTSGDRVRELQARLRALGLFNRNP--TGYYGTITQASVSAYQRGHGLSVT 144 Query: 155 GMVDSSTLEAM--NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G V T ++ R + + + K + + R + ++ + +L + NG+ Sbjct: 145 GSVSRRTWTSLRSATKTPTRDQLHPPTTLPLAKPDPRCLTGRVLCISKTSRTLAWMVNGR 204 Query: 213 VGLRSTVIVGRVDRQT 228 V V G T Sbjct: 205 VVSAMDVRFGSEYTPT 220 >gi|218689620|ref|YP_002397832.1| hypothetical protein ECED1_1877 [Escherichia coli ED1a] gi|306815069|ref|ZP_07449225.1| hypothetical protein ECNC101_23543 [Escherichia coli NC101] gi|331657653|ref|ZP_08358615.1| putative LysM domain protein [Escherichia coli TA206] gi|218427184|emb|CAR08070.2| conserved hypothetical protein [Escherichia coli ED1a] gi|305851717|gb|EFM52170.1| hypothetical protein ECNC101_23543 [Escherichia coli NC101] gi|315299726|gb|EFU58966.1| LysM domain protein [Escherichia coli MS 16-3] gi|324007052|gb|EGB76271.1| LysM domain protein [Escherichia coli MS 57-2] gi|331055901|gb|EGI27910.1| putative LysM domain protein [Escherichia coli TA206] Length = 334 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYNYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I Q+ + + I + G Sbjct: 148 TPTAGIRQRSL------------ERGIKL-----------------------PPVVPAGP 172 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 173 NNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 221 >gi|118442933|ref|YP_877698.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium novyi NT] gi|118133389|gb|ABK60433.1| ErfK/YbiS/YcfS/YnhG family [Clostridium novyi NT] Length = 305 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 19/146 (13%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 I PL LG+ V+ L+ L G + G F + E A+ FQ ++ L+ G+ Sbjct: 79 ITPLKLGSKGDDVKTLQNNLNKFGYKIKADG---VFGSSTEIAIYDFQKKNNLNRDGVAG 135 Query: 159 SSTLEAMNVPVDLRIR-----------QLQVNLMR-IKKLLEQKMGLRYVLV--NIP-AA 203 STL+ + + + N I K Y+ V N P Sbjct: 136 ESTLKKLALEPTEKTMYNPKDDIFSPVISSNNFENFINKRNANSQTDYYIWVNTNTPKTY 195 Query: 204 SLEAVENG-KVGLRSTVIVGRVDRQT 228 + + K+ VGR T Sbjct: 196 IFKGYNHHWKLIKSMPCTVGRSSSPT 221 >gi|54294361|ref|YP_126776.1| hypothetical protein lpl1430 [Legionella pneumophila str. Lens] gi|53754193|emb|CAH15670.1| hypothetical protein lpl1430 [Legionella pneumophila str. Lens] Length = 244 Score = 52.1 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L + + V++N+ L + V + V +G+ +TP+ SRI NP Sbjct: 88 RFILP-NVPRKGVVINLAEYRLYYFPPDDNVVMTYPVGIGKKGWETPLGLSRIISKEINP 146 Query: 243 YWV 245 W Sbjct: 147 TWR 149 >gi|167041966|gb|ABZ06703.1| putative ErfK/YbiS/YcfS/YnhG [uncultured marine microorganism HF4000_141E02] Length = 313 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 39/151 (25%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + +N+ N + + V +GR+D TP+ S+++ + NP W P S ++++ Sbjct: 104 MTINLAEYR-GFFANDEELITFPVGIGRMDWTTPLGISKVDLKLENPAWYPPLS-VRQEY 161 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 +++ YL V G N + + Sbjct: 162 ----QEEGIYLA------------PVIP------------------AGPDNPLGKLAMRL 187 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 ++H T +P V + GC+R+ Sbjct: 188 DIPGGYFIHGTNKPDGVGMQV---SHGCIRL 215 >gi|302532772|ref|ZP_07285114.1| predicted protein [Streptomyces sp. C] gi|302441667|gb|EFL13483.1| predicted protein [Streptomyces sp. C] Length = 137 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G+S V L+ L I LD G+ + E+AVK Q R L G+ T Sbjct: 60 PGSSGPQVAELQRALTICQGLDTG-GVDGVYGRKTEAAVKTVQARRSLKVDGIYGPDT 116 >gi|304404662|ref|ZP_07386323.1| Peptidoglycan-binding domain 1 protein [Paenibacillus curdlanolyticus YK9] gi|304346469|gb|EFM12302.1| Peptidoglycan-binding domain 1 protein [Paenibacillus curdlanolyticus YK9] Length = 389 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Query: 96 ELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + RP+ G+ V R++ L +G P + F + E AV+ FQ + L+ Sbjct: 4 AVATRPIIKRGSKGEEVTRIQTLLNKAGF--PPGTVDSDFGSNTEEAVRNFQKANHLEVD 61 Query: 155 GMVDSSTLEAM 165 G+V T + Sbjct: 62 GVVGKDTWALL 72 >gi|330839278|ref|YP_004413858.1| 3D domain-containing protein [Selenomonas sputigena ATCC 35185] gi|329747042|gb|AEC00399.1| 3D domain-containing protein [Selenomonas sputigena ATCC 35185] Length = 200 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G SV+ +++ LI G L + V +A+ FQ +GL+ G+ T Sbjct: 30 KEGMRGDSVRAVQKLLIGRGYLAEGEDDGVC-GKKTVTAITKFQQENGLEVDGICGQMTY 88 Query: 163 EAM 165 A+ Sbjct: 89 RAL 91 >gi|260886933|ref|ZP_05898196.1| LysM domain protein [Selenomonas sputigena ATCC 35185] gi|260862995|gb|EEX77495.1| LysM domain protein [Selenomonas sputigena ATCC 35185] Length = 196 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G SV+ +++ LI G L + V +A+ FQ +GL+ G+ T Sbjct: 26 KEGMRGDSVRAVQKLLIGRGYLAEGEDDGVC-GKKTVTAITKFQQENGLEVDGICGQMTY 84 Query: 163 EAM 165 A+ Sbjct: 85 RAL 87 >gi|303246139|ref|ZP_07332420.1| Peptidoglycan-binding domain 1 protein [Desulfovibrio fructosovorans JJ] gi|302492535|gb|EFL52406.1| Peptidoglycan-binding domain 1 protein [Desulfovibrio fructosovorans JJ] Length = 579 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 +V L++ L+ G LDP + AF +AV FQ+ G++ G+V +T A+ Sbjct: 183 KGAAVVALQKALLGQG-LDPGP-IDGAFGPMTHAAVLSFQLMRGIEVDGVVGPATARALG 240 Query: 167 VP 168 +P Sbjct: 241 LP 242 >gi|170725529|ref|YP_001759555.1| peptidoglycan-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|169810876|gb|ACA85460.1| Peptidoglycan-binding domain 1 protein [Shewanella woodyi ATCC 51908] Length = 538 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R + G++ +Q L L + + L FD +E +K FQ +HGL + S Sbjct: 457 REIGKGSNPAQIQWLENSLAKID--NTAPRLVSRFDIQLEEQLKRFQRKHGLRADAIAGS 514 Query: 160 STLEAMN 166 TL +N Sbjct: 515 QTLVQLN 521 >gi|25029491|ref|NP_739545.1| putative hydrolase [Corynebacterium efficiens YS-314] gi|23494780|dbj|BAC19745.1| putative hydrolase [Corynebacterium efficiens YS-314] Length = 406 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 13/105 (12%) Query: 101 PLHLGNS--SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 GN+ V ++ L G + + F Y SAV +Q+ +GL G+ Sbjct: 105 SYQPGNNLVGDDVVEMQTHLQELGFY--RERIDGRFGEYTHSAVMDYQLNYGLQVDGICG 162 Query: 159 SSTLEAMN------VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 T+ A++ Q + R++ + G R V+ Sbjct: 163 PDTIRALSRLGLRITGGSAHAIQER---ERVRSAGPRLAGKRVVI 204 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 13/77 (16%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGL-------------SVAFDAYVESAVKLFQMR 148 L +G+ S V +R L G ++ FD + +K FQ Sbjct: 16 LRVGDRSPRVAEVRNTLARLGVIEGYDRDMATRSESRKFREEDTYFDDGLSEHLKAFQQA 75 Query: 149 HGLDPSGMVDSSTLEAM 165 G+ P+G +D TL + Sbjct: 76 RGIIPTGFIDDLTLRVL 92 >gi|311067736|ref|YP_003972659.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus atrophaeus 1942] gi|310868253|gb|ADP31728.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus atrophaeus 1942] Length = 319 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 4/95 (4%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP----SKGL 130 I QT+ A + + P I+ V +++ L + G+ Sbjct: 220 INQTQAKSAPVSESATAYPLPSGVIKLTSPLTKGTKVIQVQRALAALYFYPDKGAKNNGV 279 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + A +AVK FQ+ +GL G+ T M Sbjct: 280 DGFYGAKTANAVKRFQLMNGLTADGIYGPKTKARM 314 >gi|259508327|ref|ZP_05751227.1| N-acetymuramyl-L-alanine amidase-related protein [Corynebacterium efficiens YS-314] gi|259164084|gb|EEW48638.1| N-acetymuramyl-L-alanine amidase-related protein [Corynebacterium efficiens YS-314] Length = 406 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 13/77 (16%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGL-------------SVAFDAYVESAVKLFQMR 148 L +G+ S V +R L G ++ FD + +K FQ Sbjct: 16 LRVGDRSPRVAEVRNTLARLGVIEGYDRDMATRSESRKFREEDTYFDDGLSEHLKAFQQA 75 Query: 149 HGLDPSGMVDSSTLEAM 165 G+ P+G +D TL + Sbjct: 76 RGIIPTGFIDDLTLRVL 92 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 13/105 (12%) Query: 101 PLHLGNS--SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 GN+ V ++ L G + + F Y SAV +Q+ +GL G+ Sbjct: 105 SYQPGNNLVGDDVVEMQTHLQELGFY--RERIDGRFGEYTHSAVMDYQLNYGLQVDGICG 162 Query: 159 SSTLEAMN------VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVL 197 T+ A++ Q + R++ + G R V+ Sbjct: 163 PDTIRALSRLGLRITGGSAHAIQER---ERVRSAGPRLAGKRVVI 204 >gi|94709138|sp|Q4L6D0|CTPAL_STAHJ RecName: Full=Probable CtpA-like serine protease Length = 496 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 9/87 (10%) Query: 76 AQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 T+ A YQ I +P + +G+++ V+ ++ L G S F Sbjct: 391 PDTKIASPQYQSI------SVIPTDKSYSVGDNTKYVKSIKIGLDALGY--NVNNDSKQF 442 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSST 161 D +ESA+K FQ H L +G D T Sbjct: 443 DTQLESAIKKFQSEHELSVNGKFDKKT 469 >gi|70726487|ref|YP_253401.1| carboxy-terminal processing proteinase ctpA [Staphylococcus haemolyticus JCSC1435] gi|68447211|dbj|BAE04795.1| probable carboxy-terminal processing proteinase ctpA [Staphylococcus haemolyticus JCSC1435] Length = 490 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 9/87 (10%) Query: 76 AQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 T+ A YQ I +P + +G+++ V+ ++ L G S F Sbjct: 385 PDTKIASPQYQSI------SVIPTDKSYSVGDNTKYVKSIKIGLDALGY--NVNNDSKQF 436 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSST 161 D +ESA+K FQ H L +G D T Sbjct: 437 DTQLESAIKKFQSEHELSVNGKFDKKT 463 >gi|113475771|ref|YP_721832.1| ErfK/YbiS/YcfS/YnhG [Trichodesmium erythraeum IMS101] gi|110166819|gb|ABG51359.1| ErfK/YbiS/YcfS/YnhG [Trichodesmium erythraeum IMS101] Length = 216 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 55/215 (25%), Gaps = 89/215 (41%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 ++ A+K FQ G+ + Sbjct: 69 PKLDQAIKDFQKYLGIKA---------------------------EEL----------VR 91 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 V++ I + E K V VG+ +TP + ++ +++ NP W P + ++ Sbjct: 92 VVLRIGERRVYVYEGEKEVASYPVAVGKPGWETPKGNFKVIQMVENPKWQNPWT---GEV 148 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS--TKI 313 M G A+ Sbjct: 149 MP--------------------------------------------AGPNTALGLRWIGF 164 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 +++ H TP + + GCVR+ N Sbjct: 165 WTDGKDSIGFHGTPTVGSIGS---AASHGCVRMYN 196 >gi|300114963|ref|YP_003761538.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosococcus watsonii C-113] gi|299540900|gb|ADJ29217.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosococcus watsonii C-113] Length = 356 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 47/161 (29%), Gaps = 46/161 (28%) Query: 192 GLRYVLVNIPAASLEAV-----ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 R +++N+ L + + +GR TP+ + + NP WV Sbjct: 102 PRRGIVINLAEMRLYYFPEPSSAQPSTVVTHPIGIGREGWSTPLGRTSVISKKKNPAWVP 161 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SI + ++ + R PG N Sbjct: 162 PESIRAE-----------------------------------HAADGNPLPKRVPPGPDN 186 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 + K Y +H T P +R + GC+R+ Sbjct: 187 PLG--KFAMRLGMPGYLIHGTNRPW--GVGMR-VSHGCIRL 222 >gi|158424653|ref|YP_001525945.1| putative chitinase [Azorhizobium caulinodans ORS 571] gi|158331542|dbj|BAF89027.1| putative chitinase [Azorhizobium caulinodans ORS 571] Length = 293 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 SV L+ +L G + G + E AV+ FQ ++ L G+ TL A+ Sbjct: 227 SVSDLQSKLNRLGYRLTADG---RYGPKTEEAVRDFQSKNDLKTDGIAGPVTLAAL 279 >gi|77164236|ref|YP_342761.1| hypothetical protein Noc_0717 [Nitrosococcus oceani ATCC 19707] gi|254436252|ref|ZP_05049759.1| ErfK/YbiS/YcfS/YnhG family [Nitrosococcus oceani AFC27] gi|76882550|gb|ABA57231.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707] gi|207089363|gb|EDZ66635.1| ErfK/YbiS/YcfS/YnhG family [Nitrosococcus oceani AFC27] Length = 332 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 50/169 (29%), Gaps = 47/169 (27%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENG-----KVGLRSTVIVGRVDRQTPILHSRINRI 238 + +L Q + V++N+ L + + +GR TP+ + + Sbjct: 95 RYVLPQA-PRKGVVINLAEMRLYYFPESPTAQPSTVVTHPIGIGREGWSTPLGRTSVISK 153 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF 298 NP WV P SI + ++ + Sbjct: 154 KKNPTWVPPESIRAE-----------------------------------HAADGDPLPK 178 Query: 299 RQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 PG N + K Y +H T P +R + GC+R+ Sbjct: 179 IVPPGPDNPLG--KFAMRLGMPGYLIHGTNRPW--GVGMR-VSHGCIRL 222 >gi|190572272|ref|YP_001970117.1| hypothetical protein Smlt0193 [Stenotrophomonas maltophilia K279a] gi|190010194|emb|CAQ43802.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a] Length = 663 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 7/84 (8%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 G S V++++E+L G + F ++AV+ Q +GL G+V Sbjct: 464 YKQGAHSEGVRKVQEQLGHLGYVGADGKPLVEDGRFGRNTDAAVRQLQKDNGLVADGIVG 523 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMR 182 + TLEA+ + R R L +N R Sbjct: 524 AKTLEAI---KEARERPL-LNDER 543 >gi|308272301|emb|CBX28907.1| hypothetical protein N47_B20530 [uncultured Desulfobacterium sp.] Length = 262 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 10/97 (10%) Query: 72 KETIAQTEKAIAF---YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 ++ + + A+A + GG L G+ +V L+E L G Sbjct: 171 RKYLRMAKDALAVIDGMRVAADEGG----STVVLRRGSFGNAVGDLQELLRAKGY---DV 223 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F E AV FQ GL+ G+V ++T A+ Sbjct: 224 TVDHDFGPATELAVMHFQKSTGLEKDGIVGNNTWTAL 260 >gi|186681402|ref|YP_001864598.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186463854|gb|ACC79655.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 283 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +V+ L+ L G F E VK FQ +GL G+V ++T + Sbjct: 119 DAVKELQIILNEEGFFKKEPDG--YFSRETERGVKRFQRTYGLKDDGIVGAATWAVL 173 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + R ++ S+ L+ERL L +S FD E AV FQ + L G Sbjct: 35 PILYRGFSPNSAQESINELQERLQAQDFLS---TISGKFDLETEEAVIKFQKANNLQVDG 91 Query: 156 MVDS 159 +V Sbjct: 92 IVGP 95 >gi|302536111|ref|ZP_07288453.1| predicted protein [Streptomyces sp. C] gi|302445006|gb|EFL16822.1| predicted protein [Streptomyces sp. C] Length = 387 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%) Query: 96 ELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +P+ R L G+ V++L+ LI G F A +AVK +Q H + Sbjct: 118 AVPVYRALRAGDKGEDVRQLKRNLIALGYGTGLDAQDGTFTAGTAAAVKRWQKAHKAPET 177 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNL 180 G V + + P R+++ + L Sbjct: 178 GEVAREDIAFASGP--QRVKRTEAAL 201 >gi|169794743|ref|YP_001712536.1| putative phage-related cell wall hydrolase [Acinetobacter baumannii AYE] gi|169147670|emb|CAM85533.1| putative phage-related cell wall hydrolase [Acinetobacter baumannii AYE] Length = 280 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+ +V L+++L G D + F E AV Q + GL G V Sbjct: 7 LKFGSKGDAVATLQKQLAKMGYKGVKDKPLSVDGHFGESTEFAVIQLQRKFGLVADGKVG 66 Query: 159 SSTLEAM 165 T +A+ Sbjct: 67 DKTRQAL 73 >gi|163791094|ref|ZP_02185514.1| carboxyl-terminal protease [Carnobacterium sp. AT7] gi|159873650|gb|EDP67734.1| carboxyl-terminal protease [Carnobacterium sp. AT7] Length = 496 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 7/94 (7%) Query: 81 AIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 A+ Y ++L G + LG+ S V+ L + L G + FD + Sbjct: 390 ALPDYANLLIIDG-----SKTYQLGDVSEEVKNLEKVLDALGY--SVDTIDGYFDEATQK 442 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 AV FQ+ L G V T + + I Sbjct: 443 AVSQFQIDKKLPVDGKVTGETATQLVESLRKLID 476 >gi|239636899|ref|ZP_04677898.1| carboxy- processing protease [Staphylococcus warneri L37603] gi|239597573|gb|EEQ80071.1| carboxy- processing protease [Staphylococcus warneri L37603] Length = 493 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + LG+++ V+ ++ L G + +FD +ESA+K FQ + L +G D Sbjct: 407 KTYKLGDNNKHVKTMKIGLTALGF--KVDNETKSFDTSLESAIKAFQKDNDLTVNGEFDK 464 Query: 160 ST 161 T Sbjct: 465 ET 466 >gi|256785704|ref|ZP_05524135.1| serine/threonine protein kinase [Streptomyces lividans TK24] gi|289769597|ref|ZP_06528975.1| serine/threonine protein kinase [Streptomyces lividans TK24] gi|289699796|gb|EFD67225.1| serine/threonine protein kinase [Streptomyces lividans TK24] Length = 452 Score = 51.8 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ V+ L+ L + + F + AV FQ R GLD G+V +T A Sbjct: 386 GDGGSQVRELQCLLRYLHGITAVGEVDGDFGPMTQGAVLTFQERAGLDADGIVGPATWRA 445 Query: 165 M 165 + Sbjct: 446 L 446 >gi|108759124|ref|YP_629455.1| hypothetical protein MXAN_1196 [Myxococcus xanthus DK 1622] gi|108463004|gb|ABF88189.1| hypothetical protein MXAN_1196 [Myxococcus xanthus DK 1622] Length = 205 Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 7/70 (10%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + L ++ LR RL+ G L A + AV FQ +GL P+G Sbjct: 137 TLSLGTLQPVSTEEG---LRARLVNLGFLADEASEEDA----LSEAVARFQAEYGLMPNG 189 Query: 156 MVDSSTLEAM 165 VD T + Sbjct: 190 TVDERTRHKL 199 >gi|75908501|ref|YP_322797.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75702226|gb|ABA21902.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 198 Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L GNS V+V+ L+ L+ G G F A E+AVK FQ++ L G+V + Sbjct: 135 TLRFGNSGVAVRALQRLLVAKGYAVRVDGN---FGALTETAVKAFQIQRNLSVDGVVGFN 191 Query: 161 TLEAM 165 T ++ Sbjct: 192 TWYSL 196 >gi|120599845|ref|YP_964419.1| peptidoglycan binding domain-containing protein [Shewanella sp. W3-18-1] gi|120559938|gb|ABM25865.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. W3-18-1] Length = 559 Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P LP+ + +S +Q L L + + FD +E+ +K FQ +HGL Sbjct: 473 PSLPMMEISQKSSVGQLQWLENALAHVS--NRNARRVTHFDLKLENDLKAFQSQHGLKAD 530 Query: 155 GMVDSSTLEAMN 166 G+ + TL +N Sbjct: 531 GIAGNQTLVRLN 542 >gi|146292219|ref|YP_001182643.1| peptidoglycan binding domain-containing protein [Shewanella putrefaciens CN-32] gi|145563909|gb|ABP74844.1| Peptidoglycan-binding domain 1 protein [Shewanella putrefaciens CN-32] gi|319425519|gb|ADV53593.1| type II general secretion pathway protein A, GspA [Shewanella putrefaciens 200] Length = 559 Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P LP+ + +S +Q L L + + FD +E+ +K FQ +HGL Sbjct: 473 PSLPMMEISQKSSVGQLQWLENALAHVS--NRNARRVTHFDLKLENDLKAFQSQHGLKAD 530 Query: 155 GMVDSSTLEAMN 166 G+ + TL +N Sbjct: 531 GIAGNQTLVRLN 542 >gi|257069740|ref|YP_003155995.1| cell wall-associated hydrolase, invasion-associated protein [Brachybacterium faecium DSM 4810] gi|256560558|gb|ACU86405.1| cell wall-associated hydrolase, invasion-associated protein [Brachybacterium faecium DSM 4810] Length = 372 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L GN +V L+++L +G S + F + SAV+ Q G+ +V Sbjct: 172 KLRQGNRGSAVTTLQKQLNSAG---ASLTVDGVFGSATGSAVRALQSAAGIGVDTVVGPK 228 Query: 161 TLEAMN 166 T A+N Sbjct: 229 TWNALN 234 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L LG +V L++RL G S + F + AVK Q + G+V Sbjct: 96 KLRLGARGAAVTYLQQRLNAHG---ASLKVDGVFGSATLRAVKNRQSSARIGVDGVVGPK 152 Query: 161 TLEAM 165 T A+ Sbjct: 153 TWNAL 157 >gi|330685052|gb|EGG96722.1| peptidase, S41 family [Staphylococcus epidermidis VCU121] Length = 493 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + LG+++ V+ ++ L G S +FD +ESA+K FQ + L +G D Sbjct: 407 KTYKLGDNNKHVKTMKIGLTALGF--KVDNESKSFDTSLESAIKAFQKDNDLTINGEFDK 464 Query: 160 ST 161 T Sbjct: 465 ET 466 >gi|295396865|ref|ZP_06806993.1| carboxy-terminal processing protease CtpA [Aerococcus viridans ATCC 11563] gi|294974891|gb|EFG50590.1| carboxy-terminal processing protease CtpA [Aerococcus viridans ATCC 11563] Length = 523 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 5/82 (6%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G++S +++ + L+ G D F SAV Q GL +G++ Sbjct: 435 TSQTYQEGDASGAIKNIEAILVALGYQDSEA--DAVFAEDTTSAVLALQADQGLPETGVI 492 Query: 158 DSSTLEAMNVPVDLRIRQLQVN 179 D+ T AM + + N Sbjct: 493 DTETASAM---ISAIQALIASN 511 >gi|288921344|ref|ZP_06415625.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EUN1f] gi|288347255|gb|EFC81551.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EUN1f] Length = 247 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 5/72 (6%) Query: 96 ELPIRPLHLGNSSVS--VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 + + LG S V ++++L G G F V FQ +HGL P Sbjct: 177 TVDSGYMRLGVSGPRWDVSLVQDQLRKLGYPIVVDG---YFGPQTNHMVIDFQKKHGLVP 233 Query: 154 SGMVDSSTLEAM 165 G++ T +A+ Sbjct: 234 DGVIGPLTHKAL 245 >gi|213857814|ref|ZP_03384785.1| hypothetical protein SentesT_22135 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 263 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P + I+ K + + + V Sbjct: 151 ANPTWT-PTTNIR---------------------ARYKAQGIDLPAVV------------ 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 -PAGPDNPMGHHAIRLAAYGGVYLLHGTNA--GFGIGMR-VSSGCIRLRD 222 >gi|52787273|ref|YP_093102.1| petidoglycan binding protein [Bacillus licheniformis ATCC 14580] gi|319647802|ref|ZP_08002020.1| hypothetical protein HMPREF1012_03059 [Bacillus sp. BT1B_CT2] gi|52349775|gb|AAU42409.1| putative petidoglycan binding protein, contains PG_binding_1 domain [Bacillus licheniformis ATCC 14580] gi|317390143|gb|EFV70952.1| hypothetical protein HMPREF1012_03059 [Bacillus sp. BT1B_CT2] Length = 69 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 4/64 (6%) Query: 106 NSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +V++++E L + G+ + +AVK FQ H L G+ T Sbjct: 1 MKGTAVRQIQEALAALYFYPDKGAKNNGIGGYYGPKTANAVKRFQHMHRLSADGIYGPKT 60 Query: 162 LEAM 165 + Sbjct: 61 KAKL 64 >gi|16760090|ref|NP_455707.1| hypothetical protein STY1255 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142139|ref|NP_805481.1| hypothetical protein t1705 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161680|ref|ZP_03347390.1| hypothetical protein Salmoneentericaenterica_17412 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425038|ref|ZP_03357788.1| hypothetical protein SentesTyphi_04655 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649270|ref|ZP_03379323.1| hypothetical protein SentesTy_19505 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289829624|ref|ZP_06547179.1| hypothetical protein Salmonellentericaenterica_23664 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25323528|pir||AH0644 probable exported protein STY1255 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502384|emb|CAD08339.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137768|gb|AAO69330.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 263 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P + I+ K + + + V Sbjct: 151 ANPTWT-PTTNIR---------------------ARYKAQGIDLPAVV------------ 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 -PAGPDNPMGHHAIRLAAYGGVYLLHGTNA--GFGIGMR-VSSGCIRLRD 222 >gi|294664257|ref|ZP_06729629.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605967|gb|EFF49246.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 1268 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 10/112 (8%) Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-------LHLGNSSVSV 111 V ++ P + ++ A + +P P L LG+ V Sbjct: 897 VQPKAEAVAPPSASASVPSVGSAASTLTSREEALTQATVPTPPSFQEVEGLRLGDRGQEV 956 Query: 112 QRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + L+ RL P + + F E AVK FQ GL +G+ Sbjct: 957 EFLQYRLQQVDARGPDGQAVPQNGHFGPETEHAVKQFQQDQGLPATGIAGQD 1008 >gi|298493157|ref|YP_003723334.1| peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] gi|298235075|gb|ADI66211.1| Peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] Length = 358 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 3/90 (3%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 Q I + + + L G V+ ++ +L G + + + + ++AV F Sbjct: 35 QAITATPKSAPIQLMVLSPGVRGAEVEVIQVQLKALGYYN--DLIDGQYGSSTQNAVTRF 92 Query: 146 QMRHGL-DPSGMVDSSTLEAMNVPVDLRIR 174 Q G G+ ST + + + RI+ Sbjct: 93 QQEQGFKKADGIAYESTRQHLQEVLSRRIK 122 >gi|86741674|ref|YP_482074.1| peptidoglycan binding domain-containing protein [Frankia sp. CcI3] gi|86568536|gb|ABD12345.1| Peptidoglycan-binding domain 1 [Frankia sp. CcI3] Length = 249 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V ++++RL G G F VK FQ++HGL G+V T + + Sbjct: 195 DVHQIQKRLASLGYPISVDGK---FGYQTNHMVKDFQLKHGLVVDGIVGPQTRAKLGI 249 >gi|251797379|ref|YP_003012110.1| spore cortex-lytic enzyme [Paenibacillus sp. JDR-2] gi|247545005|gb|ACT02024.1| spore cortex-lytic enzyme [Paenibacillus sp. JDR-2] Length = 264 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L +G+S V L+ RL G + + S F ++AV FQ + G+ G Sbjct: 33 TFSNATLTVGSSGSDVYELQGRLKYLGYYNGAIDGS--FGTKTKNAVTWFQWKFGMKSDG 90 Query: 156 MVDSST 161 +V + T Sbjct: 91 VVGAKT 96 >gi|326202068|ref|ZP_08191938.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium papyrosolvens DSM 2782] gi|325987863|gb|EGD48689.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium papyrosolvens DSM 2782] Length = 236 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 R L G+ V ++ERL G + S ++ +++AV FQ H L Sbjct: 167 RNLKPGDRGADVLAVQERLKQLGYFHGYE--SGIYEDDLKNAVFQFQKDHNLKV 218 >gi|257142668|ref|ZP_05590930.1| bacteriophage-acquired protein [Burkholderia thailandensis E264] Length = 270 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AV+ Q L G+ T Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDEQTERAVQTLQAAASLVVDGIAGPKT 60 Query: 162 LEAM 165 + Sbjct: 61 YRVL 64 >gi|17229353|ref|NP_485901.1| hypothetical protein all1861 [Nostoc sp. PCC 7120] gi|17130951|dbj|BAB73560.1| all1861 [Nostoc sp. PCC 7120] Length = 269 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 13/74 (17%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L LG+ +V ++ + + + + A V+ FQ +GL G+V Sbjct: 139 TLRLGSRGQAVSAVQRAIGVE--------PTGYYGAVTARRVREFQANNGLRADGIVGPQ 190 Query: 161 TLEAM-----NVPV 169 T A+ N P Sbjct: 191 TRNALFRGNQNQPP 204 Score = 49.8 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 12/90 (13%) Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 QT A+ ++ P L G+ +V ++ L + + + Sbjct: 189 PQTRNALFR----GNQNQPPTGGPVTLGFGSRGSAVSEVQRALGVE--------PTGYYG 236 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V+ FQ +GL G+V T A+ Sbjct: 237 TVTVRRVREFQANNGLRVDGVVGPETRSAL 266 >gi|111222214|ref|YP_713008.1| putative N-acetylmuramoyl-L-alanine amidase [Frankia alni ACN14a] gi|111149746|emb|CAJ61438.1| putative N-acetylmuramoyl-L-alanine amidase precursor (Cell wall hydrolase) (Autolysin) [Frankia alni ACN14a] Length = 124 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 24/51 (47%) Query: 119 IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 + G D + A+ +AV+ FQ RHGL P G V T + VPV Sbjct: 3 YLLGAHDLRVPVDGAYGPRTVTAVREFQTRHGLTPDGQVGQRTWPVLIVPV 53 >gi|30249623|ref|NP_841693.1| hypothetical protein NE1659 [Nitrosomonas europaea ATCC 19718] gi|30138986|emb|CAD85570.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718] Length = 326 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 75/230 (32%), Gaps = 73/230 (31%) Query: 185 KLLEQK-----MGLRYVL---------VNIPAASLEAV---ENGK--VGLRSTVIVGRVD 225 + L + + LR+++ +N+P L G+ + V +GR+D Sbjct: 78 RWLPEDGAEVVLPLRFIIPQAERIGLVINLPEMRLYYFPKPAKGQKPEIITHPVSIGRMD 137 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 TP+ + I R +P W P+S+ + + +GK + Sbjct: 138 WNTPLGRTTIVRKQKDPTWTPPQSLKAEAI--------------------AEGKPPLSDV 177 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-------MHDTPEPILFNNVVRF 338 V PG N + Y +H T +P F +R Sbjct: 178 V--------------PPGPDNPLGR--------YALYLGLPGYLIHSTNKP--FGVGMR- 212 Query: 339 ETSGCVRV--RNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 T GC+R+ +I +L + TP ++ ++L + Sbjct: 213 VTHGCMRLYPEDIEELFNLVPTGTPVQIVNQPVKLGWQENLLFIELHPPL 262 >gi|288916828|ref|ZP_06411201.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EUN1f] gi|288351713|gb|EFC85917.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EUN1f] Length = 209 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G +V + RL ++ L + AF ++A + FQ HGL G+V T Sbjct: 142 LQVGAFGAAVATWQWRLRLA--LHRDLTVDEAFGPLTQAATRDFQSSHGLVVDGVVGPVT 199 Query: 162 LEAM 165 M Sbjct: 200 RARM 203 >gi|213583711|ref|ZP_03365537.1| hypothetical protein SentesTyph_21815 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 35 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 8/31 (25%), Positives = 12/31 (38%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + + AVK FQ GL G++ Sbjct: 5 TDNIYTPELVEAVKRFQQWQGLTDDGVIGPR 35 >gi|293189417|ref|ZP_06608137.1| putative surface protein PspA [Actinomyces odontolyticus F0309] gi|292821507|gb|EFF80446.1| putative surface protein PspA [Actinomyces odontolyticus F0309] Length = 513 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G + V+ R RL + + DA +AVK FQ R GL +G+VD Sbjct: 290 TNTLTWGMNGTKVRIARVRLGLW-----HSNKLASVDAPFVAAVKNFQQRAGLPVTGVVD 344 Query: 159 SSTLEAMNVPVDLRIRQ 175 +T +AM+ + Q Sbjct: 345 KATWDAMDTGYPWTVDQ 361 >gi|154505139|ref|ZP_02041877.1| hypothetical protein RUMGNA_02652 [Ruminococcus gnavus ATCC 29149] gi|153794618|gb|EDN77038.1| hypothetical protein RUMGNA_02652 [Ruminococcus gnavus ATCC 29149] Length = 484 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 15/121 (12%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPI-LHSRINRIMFNPYWV 245 Q G Y V++ A + V+NG+V L + V+ G + TP ++S + W Sbjct: 348 QDWGNTYAEVDMSAQHMWYVQNGQVVLETDVVTGEPIPSKITPEGVYSLM--------WK 399 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 P S++ D+ + P Y + V + W + Q PG Sbjct: 400 QPNSVLVGDINPDTGE-PAYRTKVKY-WMQVTSSGVGFHDATWQTAFGGTLY--QIPGTG 455 Query: 306 N 306 + Sbjct: 456 S 456 >gi|16079643|ref|NP_390467.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|221310519|ref|ZP_03592366.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|221314843|ref|ZP_03596648.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319764|ref|ZP_03601058.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. JH642] gi|221324043|ref|ZP_03605337.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. SMY] gi|321312085|ref|YP_004204372.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis BSn5] gi|113674|sp|P24808|CWLA_BACSU RecName: Full=N-acetylmuramoyl-L-alanine amidase CwlA; AltName: Full=Autolysin; AltName: Full=Cell wall hydrolase; Flags: Precursor gi|39874|emb|CAA35788.1| hydrolase [Bacillus subtilis] gi|142802|gb|AAA62676.1| N-Acetylmuramoyl-L-alanine amidase [Bacillus subtilis] gi|1217875|dbj|BAA06960.1| cell wall lytic enzyme (autolysin) [Bacillus subtilis] gi|1303768|dbj|BAA12424.1| CwlA [Bacillus subtilis] gi|2635035|emb|CAB14531.1| N-acetylmuramoyl-L-alanine amidase; skin element [Bacillus subtilis subsp. subtilis str. 168] gi|320018359|gb|ADV93345.1| N-acetylmuramoyl-L-alanine amidase; skin element [Bacillus subtilis BSn5] Length = 272 Score = 51.4 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 4/64 (6%) Query: 106 NSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 V ++++ L + G+ + A++ FQ +GL G+ T Sbjct: 204 MRGEKVTQIQKALAALYFYPDKGAKNNGIDGVYGPKTADAIRRFQSMYGLTQDGIYGPKT 263 Query: 162 LEAM 165 + Sbjct: 264 KAKL 267 >gi|284006311|emb|CBA71547.1| peptidoglycan-binding protein [Arsenophonus nasoniae] Length = 322 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 58/184 (31%), Gaps = 41/184 (22%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++VN+ L G + + +G++ TP + + +++++ NP W P + I+K Sbjct: 115 IIVNLAELRLYYFPKGSNKVIVYPIGIGQLGANTPKMVTTVSQLIKNPTWT-PTANIRKR 173 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 A P G N M + Sbjct: 174 YAADGVILPAVF----------------------------------PAGPDNPMGLYALR 199 Query: 315 FYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVK 373 Y +H T F +R +SGC+R+ D++ I E +K Sbjct: 200 LSYGKGQYLIHGTNAN--FGIGLR-VSSGCIRL-RPEDIEALFYSIPVGTRVQVINEPIK 255 Query: 374 TRKT 377 K Sbjct: 256 YAKE 259 >gi|294631054|ref|ZP_06709614.1| peptidoglycan binding domain-containing protein [Streptomyces sp. e14] gi|292834387|gb|EFF92736.1| peptidoglycan binding domain-containing protein [Streptomyces sp. e14] Length = 282 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 29/146 (19%) Query: 98 PIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 P R L G+S SV+ L+ RL L + + + E AV+ FQ + GL +G Sbjct: 72 PARVLWSRGDSGRSVRELQARLRQIAWLSEAP--TGTYGPLTERAVRGFQSKRGLPATGR 129 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMR----IKKLL----------EQKMGLRYVLVNIPA 202 D+ T + V + R + + + R + ++ + Sbjct: 130 TDTVTWRRL------------VAMTRAPGTWELYPMGGQPAGAPDARCLTGRVLCIDKTS 177 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQT 228 +L + +G+ V G T Sbjct: 178 RTLRWMIDGRTLSTMAVRFGTQYTPT 203 >gi|289809529|ref|ZP_06540158.1| hypothetical protein Salmonellaentericaenterica_35902 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 182 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 28 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 86 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P + I+ K + + + V Sbjct: 87 ANPTWT-PTTNIR---------------------ARYKAQGIDLPAVV------------ 112 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 113 -PAGPDNPMGHHAIRLAAYGGVYLLHGTNA--GFGIGMR-VSSGCIRLRD 158 >gi|225166762|ref|YP_002650747.1| hypothetical protein pC2C203U28_p029 [Clostridium botulinum] gi|253771405|ref|YP_003034242.1| peptidoglycan binding domain protein [Clostridium botulinum D str. 1873] gi|225007426|dbj|BAH29522.1| conserved hypothetical protein [Clostridium botulinum] gi|253721382|gb|ACT33675.1| peptidoglycan binding domain protein [Clostridium botulinum D str. 1873] Length = 266 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V +L++ L G + F ++ VK FQ +GL +G+VD T Sbjct: 2 LKQGDRGANVSKLQKTLKYLGY--SCGKIDGIFGESTKNQVKRFQKHNGLPANGIVDVVT 59 Query: 162 LEAM 165 +++ Sbjct: 60 EKSL 63 >gi|213582012|ref|ZP_03363838.1| hypothetical protein SentesTyph_12759 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 249 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P + I+ K + + + V Sbjct: 151 ANPTWT-PTTNIR---------------------ARYKAQGIDLPAVV------------ 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 -PAGPDNPMGHHAIRLAAYGGVYLLHGTNA--GFGIGMR-VSSGCIRLRD 222 >gi|332992109|gb|AEF02164.1| hypothetical protein ambt_03050 [Alteromonas sp. SN2] Length = 558 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 4/64 (6%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAF----DAYVESAVKLFQMRHGLDPSGMVDSST 161 +SS ++ +R RLI G L + D + +K FQ G+ G T Sbjct: 38 DSSAYIRAIRARLIELGYLGEGHKFANRHNPQTDRILIKKIKQFQYDAGITQDGWAGKLT 97 Query: 162 LEAM 165 + + Sbjct: 98 WQVL 101 >gi|237795719|ref|YP_002863271.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum Ba4 str. 657] gi|229262866|gb|ACQ53899.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum Ba4 str. 657] Length = 281 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 5/113 (4%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAI--AFYQDILSRGGWPELPIRPLHLGNSSVSVQ 112 + + + P SK + + Y ++ SR G+ LP G + Sbjct: 167 LVGKTASTTSNSEPSTSKPVQTNKKHPLINQLYAEM-SRQGFNTLP--TCRQGARGNITK 223 Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +++ LI G S G F + AVK FQ L G+V T + + Sbjct: 224 IIQQMLINIGYPVGSFGADGVFGSGTVVAVKSFQRDCNLGADGIVGRETWKVL 276 >gi|225851535|ref|YP_002731769.1| ErfK/YbiS/YcfS/YnhG family protein [Persephonella marina EX-H1] gi|225644873|gb|ACO03059.1| ErfK/YbiS/YcfS/YnhG family protein [Persephonella marina EX-H1] Length = 427 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 66/185 (35%), Gaps = 48/185 (25%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEA---VENGKVGLRSTVIVGRVDRQTPILHSRINRI 238 R + L E++ + +N+ L +++ + V +G + ++PI I+ Sbjct: 224 RKRLLPEKEFNFGEIYLNLSEKRLYYPVIIDDDPYVISIPVGIGTDENRSPIGDFFISEK 283 Query: 239 MFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIF 298 NP W +P +I ++D P+ Sbjct: 284 RKNPAWYVPDNIKEED---------------------------------------PSLPD 304 Query: 299 RQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 PG N + + + + TY +H T + F ++ + GC+R+ N ++ L Sbjct: 305 IVPPGPNNPLGTRAMRLSN--TTYLLHGTSKR--FGIGMK-VSHGCIRMYNEDVEALFDL 359 Query: 358 KDTPT 362 +T T Sbjct: 360 VETGT 364 >gi|315169844|gb|EFU13861.1| peptidase [Enterococcus faecalis TX1342] Length = 480 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV+ Q ++GL +G +D+ Sbjct: 392 KTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVRDLQQKNGLPVTGEIDN 449 Query: 160 ST 161 T Sbjct: 450 ET 451 >gi|75910951|ref|YP_325247.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75704676|gb|ABA24352.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 269 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 13/74 (17%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L LG+ +V ++ + + + + A V+ FQ +GL G+V Sbjct: 139 TLRLGSRGQAVSAVQRAIGVE--------PTGYYGAVTARRVREFQANNGLRADGIVGPE 190 Query: 161 TLEAM-----NVPV 169 T A+ N P Sbjct: 191 TRNALFRGNQNQPP 204 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 11/83 (13%) Query: 86 QDILSRGGWPELPIR---PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 ++ L RG + PI L G+ +V ++ L + + + V Sbjct: 192 RNALFRGNQNQPPIGGPVTLSFGSRGSAVSEVQRALGVE--------PTGYYGTVTVRRV 243 Query: 143 KLFQMRHGLDPSGMVDSSTLEAM 165 + FQ +GL G+V T A+ Sbjct: 244 REFQANNGLRVDGVVGPETRSAL 266 >gi|21223194|ref|NP_628973.1| serine/threonine protein kinase [Streptomyces coelicolor A3(2)] gi|9367447|emb|CAB97420.1| putative serine/threonine protein kinase [Streptomyces coelicolor A3(2)] Length = 452 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ V+ L+ L + + F + AV FQ R GLD G+V +T A Sbjct: 386 GDGGSQVRELQCLLRYLHGITAVGEVDGDFGPMTQGAVVTFQERAGLDADGIVGPATWRA 445 Query: 165 M 165 + Sbjct: 446 L 446 >gi|282927518|ref|ZP_06335135.1| carboxyl-terminal processing protease [Staphylococcus aureus A9765] gi|282592058|gb|EFB97084.1| carboxyl-terminal processing protease [Staphylococcus aureus A9765] Length = 496 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDKALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|253732059|ref|ZP_04866224.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724192|gb|EES92921.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 496 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDKALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|87160602|ref|YP_494010.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195151|ref|YP_499952.1| hypothetical protein SAOUHSC_01427 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221544|ref|YP_001332366.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus str. Newman] gi|161509587|ref|YP_001575246.1| peptidase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142075|ref|ZP_03566568.1| peptidase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|258451079|ref|ZP_05699114.1| carboxyl-terminal protease [Staphylococcus aureus A5948] gi|284024420|ref|ZP_06378818.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus 132] gi|294850746|ref|ZP_06791464.1| carboxyl-terminal processing protease [Staphylococcus aureus A9754] gi|304381001|ref|ZP_07363658.1| carboxy-terminal processing protease CtpA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|87126576|gb|ABD21090.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202709|gb|ABD30519.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374344|dbj|BAF67604.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus str. Newman] gi|160368396|gb|ABX29367.1| S41A family carboxy-terminal peptidase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257861134|gb|EEV83947.1| carboxyl-terminal protease [Staphylococcus aureus A5948] gi|269940915|emb|CBI49299.1| putative protease [Staphylococcus aureus subsp. aureus TW20] gi|294822386|gb|EFG38837.1| carboxyl-terminal processing protease [Staphylococcus aureus A9754] gi|302751250|gb|ADL65427.1| serine protease [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340477|gb|EFM06414.1| carboxy-terminal processing protease CtpA [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315195854|gb|EFU26222.1| S41A family carboxy-terminal peptidase [Staphylococcus aureus subsp. aureus CGS01] gi|320140334|gb|EFW32191.1| peptidase [Staphylococcus aureus subsp. aureus MRSA131] gi|320142665|gb|EFW34468.1| peptidase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314097|gb|AEB88510.1| Carboxyl-terminal protease [Staphylococcus aureus subsp. aureus T0131] gi|329730570|gb|EGG66956.1| peptidase, S41 family [Staphylococcus aureus subsp. aureus 21189] Length = 496 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDKALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|57650378|ref|YP_186306.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus COL] gi|81694508|sp|Q5HG01|CTPAL_STAAC RecName: Full=Probable CtpA-like serine protease gi|57284564|gb|AAW36658.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus COL] Length = 496 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDKALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|326391827|ref|ZP_08213343.1| carboxyl-terminal protease [Thermoanaerobacter ethanolicus JW 200] gi|325992133|gb|EGD50609.1| carboxyl-terminal protease [Thermoanaerobacter ethanolicus JW 200] Length = 457 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 35/180 (19%) Query: 3 GYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG 62 YL K + ++ I + ++ E Sbjct: 272 SYLNNPKYKLAVLINGNTASAAEILAGAIQDTKAGTLVGEKSFG-------------KGT 318 Query: 63 IDSDIPIISKETIAQTEKAIAFY-----QDILSRGGWPELPI------------RPLHLG 105 + S +P+ T IA Y + I +G P++ + L +G Sbjct: 319 VQSVVPLPDGSGFKLT---IARYKLPSGRYIDKQGLKPDIYVVNTQYTPSIKFNGTLRVG 375 Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + V+ L++ L I + F +AVK Q + GL P+G+ D +T +A+ Sbjct: 376 SRGNDVKILQKNLNILKF--NAGPEDGIFGPKTANAVKELQKKAGLTPTGVFDKNTYDAL 433 >gi|295100343|emb|CBK97888.1| Putative peptidoglycan-binding domain-containing protein [Faecalibacterium prausnitzii L2-6] Length = 159 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 5/83 (6%) Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 A Y G P L G++ V+ ++++L G+ + G F +AV Sbjct: 78 ARYT--AKHGLIVPYPGIVLRSGSAGGCVRLVQQKLNTDGERLTTDG---RFGTSTVAAV 132 Query: 143 KLFQMRHGLDPSGMVDSSTLEAM 165 K +Q RH L G V T E M Sbjct: 133 KRYQTRHSLTSDGSVGKDTWEKM 155 Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + G+S V ++ L D + + F A E AV+ FQ+R+GL G V Sbjct: 10 IRRGSSGPDVALVQTWLNGIRDSCTWYAALTVDGTFGANAEKAVREFQLRYGLKEDGKVG 69 Query: 159 SSTLEAM 165 ++T + Sbjct: 70 ANTWNVL 76 >gi|194015260|ref|ZP_03053876.1| N-acetylmuramoyl-L-alanine amidase CwlA (Cellwall hydrolase) (Autolysin) [Bacillus pumilus ATCC 7061] gi|194012664|gb|EDW22230.1| N-acetylmuramoyl-L-alanine amidase CwlA (Cellwall hydrolase) (Autolysin) [Bacillus pumilus ATCC 7061] Length = 279 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 5/75 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRH-G 150 +P + G +V +L+ L + G+ + +AVK FQ G Sbjct: 194 AVPTGVIRQGARGTAVTQLQNALAAVYFYPDKGAKNNGIDGIYGPKTANAVKRFQSTQAG 253 Query: 151 LDPSGMVDSSTLEAM 165 + G+ S+T + Sbjct: 254 IANDGIYGSATRAKL 268 >gi|94968756|ref|YP_590804.1| ErfK/YbiS/YcfS/YnhG [Candidatus Koribacter versatilis Ellin345] gi|94550806|gb|ABF40730.1| ErfK/YbiS/YcfS/YnhG [Candidatus Koribacter versatilis Ellin345] Length = 205 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 49/162 (30%), Gaps = 53/162 (32%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 +E R +LV+IP L +E+ KV V VG+ +P I + NP Sbjct: 39 MEAPRPTRLILVSIPDRKLALLEDDKVVKVYPVAVGKDSTPSPEGTFTIKSHVTNPT--- 95 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +GK V PG N Sbjct: 96 ---------------------------YYHEGKVV-------------------APGPQN 109 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + S + S +H T P ++ + + GC+R+ Sbjct: 110 PLGS-RWMGLSEKGYGIHGTNAP---KSIGKAASHGCIRMAK 147 >gi|327393725|dbj|BAK11147.1| ErfK/YbiS/YcfS/YnhG family protein YcfS [Pantoea ananatis AJ13355] Length = 326 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 42/182 (23%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKV-GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 ++VN+ L G+ + + +G++ TPI+ + I++ + NP W P Sbjct: 93 PDTPREGIVVNLAELRLYYYPKGEDKVIVYPIGIGQMGIVTPIMVTSISQKIPNPTWT-P 151 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 + I+K I + G N Sbjct: 152 TANIRKRY-----------AKEGITL-----------------------PAVVPAGPDNP 177 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 M + Y +H T F +R +SGC+R+R + L P +R Sbjct: 178 MGLHALRMARGTGQYLIHGTNAN--FGIGMR-VSSGCIRLR--TEDIEALFNSVPVGTRV 232 Query: 367 HI 368 I Sbjct: 233 QI 234 >gi|291617273|ref|YP_003520015.1| YcfS [Pantoea ananatis LMG 20103] gi|291152303|gb|ADD76887.1| YcfS [Pantoea ananatis LMG 20103] Length = 326 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 42/182 (23%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKV-GLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 ++VN+ L G+ + + +G++ TPI+ + I++ + NP W P Sbjct: 93 PDTPREGIVVNLAELRLYYYPKGEDKVIVYPIGIGQMGIVTPIMVTSISQKIPNPTWT-P 151 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 + I+K I + G N Sbjct: 152 TANIRKRY-----------AKEGITL-----------------------PAVVPAGPDNP 177 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 M + Y +H T F +R +SGC+R+R + L P +R Sbjct: 178 MGLHALRMARGTGQYLIHGTNAN--FGIGMR-VSSGCIRLR--TEDIEALFNSVPVGTRV 232 Query: 367 HI 368 I Sbjct: 233 QI 234 >gi|283470634|emb|CAQ49845.1| carboxy-processing protease [Staphylococcus aureus subsp. aureus ST398] Length = 496 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|258422547|ref|ZP_05685455.1| carboxyl-terminal protease [Staphylococcus aureus A9635] gi|257847304|gb|EEV71310.1| carboxyl-terminal protease [Staphylococcus aureus A9635] Length = 496 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|148267907|ref|YP_001246850.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus JH9] gi|150393970|ref|YP_001316645.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus JH1] gi|253315257|ref|ZP_04838470.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733333|ref|ZP_04867498.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus TCH130] gi|257795525|ref|ZP_05644504.1| carboxyl-terminal protease [Staphylococcus aureus A9781] gi|258413333|ref|ZP_05681609.1| carboxyl-terminal protease [Staphylococcus aureus A9763] gi|258420560|ref|ZP_05683502.1| carboxyl-terminal protease [Staphylococcus aureus A9719] gi|258434668|ref|ZP_05688742.1| carboxyl-terminal protease [Staphylococcus aureus A9299] gi|258444756|ref|ZP_05693085.1| carboxyl-terminal protease [Staphylococcus aureus A8115] gi|258447410|ref|ZP_05695554.1| carboxyl-terminal protease [Staphylococcus aureus A6300] gi|258449251|ref|ZP_05697354.1| carboxyl-terminal protease [Staphylococcus aureus A6224] gi|258454630|ref|ZP_05702594.1| carboxyl-terminal protease [Staphylococcus aureus A5937] gi|269203042|ref|YP_003282311.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus ED98] gi|282892915|ref|ZP_06301150.1| carboxyl-terminal processing protease [Staphylococcus aureus A8117] gi|282927946|ref|ZP_06335555.1| carboxyl-terminal processing protease [Staphylococcus aureus A10102] gi|295406366|ref|ZP_06816173.1| carboxyl-terminal processing protease [Staphylococcus aureus A8819] gi|296275280|ref|ZP_06857787.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus MR1] gi|297244595|ref|ZP_06928478.1| carboxyl-terminal processing protease [Staphylococcus aureus A8796] gi|147740976|gb|ABQ49274.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus JH9] gi|149946422|gb|ABR52358.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus JH1] gi|253728685|gb|EES97414.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus TCH130] gi|257789497|gb|EEV27837.1| carboxyl-terminal protease [Staphylococcus aureus A9781] gi|257839897|gb|EEV64365.1| carboxyl-terminal protease [Staphylococcus aureus A9763] gi|257843508|gb|EEV67915.1| carboxyl-terminal protease [Staphylococcus aureus A9719] gi|257849029|gb|EEV73011.1| carboxyl-terminal protease [Staphylococcus aureus A9299] gi|257850249|gb|EEV74202.1| carboxyl-terminal protease [Staphylococcus aureus A8115] gi|257853601|gb|EEV76560.1| carboxyl-terminal protease [Staphylococcus aureus A6300] gi|257857239|gb|EEV80137.1| carboxyl-terminal protease [Staphylococcus aureus A6224] gi|257863013|gb|EEV85777.1| carboxyl-terminal protease [Staphylococcus aureus A5937] gi|262075332|gb|ACY11305.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus ED98] gi|282590243|gb|EFB95323.1| carboxyl-terminal processing protease [Staphylococcus aureus A10102] gi|282764912|gb|EFC05037.1| carboxyl-terminal processing protease [Staphylococcus aureus A8117] gi|285817098|gb|ADC37585.1| Probable carboxy-terminal processing proteinase ctpA [Staphylococcus aureus 04-02981] gi|294968954|gb|EFG44976.1| carboxyl-terminal processing protease [Staphylococcus aureus A8819] gi|297178625|gb|EFH37871.1| carboxyl-terminal processing protease [Staphylococcus aureus A8796] gi|312829814|emb|CBX34656.1| C-terminal processing peptidase family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129129|gb|EFT85124.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus CGS03] gi|329727143|gb|EGG63599.1| peptidase, S41 family [Staphylococcus aureus subsp. aureus 21172] Length = 496 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|15924410|ref|NP_371944.1| carboxy-terminal processing proteinase [Staphylococcus aureus subsp. aureus Mu50] gi|15927001|ref|NP_374534.1| carboxy-terminal processing proteinase ctpA [Staphylococcus aureus subsp. aureus N315] gi|156979739|ref|YP_001441998.1| carboxy-terminal processing proteinase [Staphylococcus aureus subsp. aureus Mu3] gi|255006209|ref|ZP_05144810.2| carboxy-terminal processing proteinase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|81705698|sp|Q7A5M9|CTPAL_STAAN RecName: Full=Probable CtpA-like serine protease gi|81781605|sp|Q99U67|CTPAL_STAAM RecName: Full=Probable CtpA-like serine protease gi|13701218|dbj|BAB42513.1| probable carboxy-terminal processing proteinase ctpA [Staphylococcus aureus subsp. aureus N315] gi|14247191|dbj|BAB57582.1| probable carboxy-terminal processing proteinase [Staphylococcus aureus subsp. aureus Mu50] gi|156721874|dbj|BAF78291.1| probable carboxy-terminal processing proteinase [Staphylococcus aureus subsp. aureus Mu3] Length = 496 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|163759276|ref|ZP_02166362.1| hypothetical protein HPDFL43_05910 [Hoeflea phototrophica DFL-43] gi|162283680|gb|EDQ33965.1| hypothetical protein HPDFL43_05910 [Hoeflea phototrophica DFL-43] Length = 236 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ L+ERL G + A AV+ FQ HGL G+ T A+ Sbjct: 4 IRDLQERLKALGY--NPGIVDGAMGPNTRKAVREFQADHGLGIDGVAGPRTWSAL 56 >gi|17232825|ref|NP_489373.1| hypothetical protein alr5333 [Nostoc sp. PCC 7120] gi|17134472|dbj|BAB77032.1| alr5333 [Nostoc sp. PCC 7120] Length = 130 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 6/72 (8%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V+ ++ L G + + L + AV FQ L G V T Sbjct: 56 LRPGSRGQAVRDVQAVLQSLGFYNGA--LDGIYGLRTARAVAAFQRSQRLVGDGRVGKLT 113 Query: 162 LEAM----NVPV 169 +A+ N+P Sbjct: 114 WQALRNSKNIPP 125 >gi|281418662|ref|ZP_06249681.1| peptidase M14 carboxypeptidase A [Clostridium thermocellum JW20] gi|281407746|gb|EFB38005.1| peptidase M14 carboxypeptidase A [Clostridium thermocellum JW20] Length = 423 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+ V+ + L G P + + AV FQ +GL G+V +T Sbjct: 4 LRLGSVGPDVKLAQSLLNKIGY--PVGAVDGIYGTRTRQAVIAFQRNNGLVADGIVGPAT 61 Query: 162 LE 163 Sbjct: 62 WS 63 >gi|256003872|ref|ZP_05428859.1| peptidase M14 carboxypeptidase A [Clostridium thermocellum DSM 2360] gi|255992210|gb|EEU02305.1| peptidase M14 carboxypeptidase A [Clostridium thermocellum DSM 2360] gi|316939083|gb|ADU73117.1| peptidase M14 carboxypeptidase A [Clostridium thermocellum DSM 1313] Length = 423 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+ V+ + L G P + + AV FQ +GL G+V +T Sbjct: 4 LRLGSVGPDVKLAQSLLNKIGY--PVGAVDGIYGTRTRQAVIAFQRNNGLVADGIVGPAT 61 Query: 162 LE 163 Sbjct: 62 WS 63 >gi|224826478|ref|ZP_03699580.1| Peptidoglycan-binding domain 1 protein [Lutiella nitroferrum 2002] gi|224601579|gb|EEG07760.1| Peptidoglycan-binding domain 1 protein [Lutiella nitroferrum 2002] Length = 553 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 2/71 (2%) Query: 94 WPELP--IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P PL G+ + V L + + + + FDA +E V FQ GL Sbjct: 457 WKAPPNYRAPLARGSRGLMVSWLNHQFGQPLEPLAATAKNPVFDARLEEQVMRFQRADGL 516 Query: 152 DPSGMVDSSTL 162 G+V TL Sbjct: 517 PSDGIVGPHTL 527 >gi|168333614|ref|ZP_02691874.1| spore cortex-lytic enzyme SleC [Epulopiscium sp. 'N.t. morphotype B'] Length = 145 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 3/89 (3%) Query: 80 KAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDA 136 K I F + G P + +GN +V+ ++E+L L P + F Sbjct: 43 KNIEFKEAKAVYGNPESFPGYSIKIGNEGAAVRTIQEQLNRISQSYPLIPKVPSNGVFGE 102 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 E A+K+FQ L P G+V +T + Sbjct: 103 KTEEAIKVFQKVFYLAPDGVVGKATWYKL 131 >gi|312438178|gb|ADQ77249.1| carboxy-terminal processing protease [Staphylococcus aureus subsp. aureus TCH60] Length = 496 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENLVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|213022863|ref|ZP_03337310.1| hypothetical protein Salmonelentericaenterica_09678 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 252 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P + I+ K + + + V Sbjct: 151 ANPTWT-PTTNIR---------------------ARYKAQGIDLPAVV------------ 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 -PAGPDNPMGHHAIRLAAYGGVYLLHGTNA--GFGIGMR-VSSGCIRLRD 222 >gi|49483610|ref|YP_040834.1| protease [Staphylococcus aureus subsp. aureus MRSA252] gi|257425484|ref|ZP_05601909.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus 55/2053] gi|257428144|ref|ZP_05604542.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus 65-1322] gi|257430776|ref|ZP_05607158.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus 68-397] gi|257433535|ref|ZP_05609893.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus E1410] gi|257436376|ref|ZP_05612423.1| carboxy-terminal processing proteinase ctpA [Staphylococcus aureus subsp. aureus M876] gi|282904003|ref|ZP_06311891.1| carboxyl- protease [Staphylococcus aureus subsp. aureus C160] gi|282905765|ref|ZP_06313620.1| ctpA-family serine protease [Staphylococcus aureus subsp. aureus Btn1260] gi|282908737|ref|ZP_06316555.1| peptidase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282914211|ref|ZP_06321998.1| carboxyl- protease [Staphylococcus aureus subsp. aureus M899] gi|282919133|ref|ZP_06326868.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus C427] gi|282924316|ref|ZP_06331990.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus C101] gi|283958185|ref|ZP_06375636.1| carboxyl- protease [Staphylococcus aureus subsp. aureus A017934/97] gi|293501235|ref|ZP_06667086.1| ctpA serine protease [Staphylococcus aureus subsp. aureus 58-424] gi|293510198|ref|ZP_06668906.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus M809] gi|293526791|ref|ZP_06671476.1| carboxyl- protease [Staphylococcus aureus subsp. aureus M1015] gi|295427933|ref|ZP_06820565.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591105|ref|ZP_06949743.1| carboxy-terminal processing protease [Staphylococcus aureus subsp. aureus MN8] gi|81696485|sp|Q6GGY8|CTPAL_STAAR RecName: Full=Probable CtpA-like serine protease gi|49241739|emb|CAG40429.1| putative protease [Staphylococcus aureus subsp. aureus MRSA252] gi|257271941|gb|EEV04079.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus 55/2053] gi|257274985|gb|EEV06472.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus 65-1322] gi|257278904|gb|EEV09523.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus 68-397] gi|257281628|gb|EEV11765.1| carboxyl-terminal protease [Staphylococcus aureus subsp. aureus E1410] gi|257284658|gb|EEV14778.1| carboxy-terminal processing proteinase ctpA [Staphylococcus aureus subsp. aureus M876] gi|282313703|gb|EFB44096.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus C101] gi|282316943|gb|EFB47317.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus C427] gi|282322279|gb|EFB52603.1| carboxyl- protease [Staphylococcus aureus subsp. aureus M899] gi|282327001|gb|EFB57296.1| peptidase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331057|gb|EFB60571.1| ctpA-family serine protease [Staphylococcus aureus subsp. aureus Btn1260] gi|282595621|gb|EFC00585.1| carboxyl- protease [Staphylococcus aureus subsp. aureus C160] gi|283790334|gb|EFC29151.1| carboxyl- protease [Staphylococcus aureus subsp. aureus A017934/97] gi|290920863|gb|EFD97926.1| carboxyl- protease [Staphylococcus aureus subsp. aureus M1015] gi|291096240|gb|EFE26501.1| ctpA serine protease [Staphylococcus aureus subsp. aureus 58-424] gi|291467142|gb|EFF09660.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus M809] gi|295128291|gb|EFG57925.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575991|gb|EFH94707.1| carboxy-terminal processing protease [Staphylococcus aureus subsp. aureus MN8] gi|315195315|gb|EFU25702.1| putative protease [Staphylococcus aureus subsp. aureus CGS00] Length = 496 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENLVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|332671624|ref|YP_004454632.1| peptidoglycan-binding domain 1 protein [Cellulomonas fimi ATCC 484] gi|332340662|gb|AEE47245.1| Peptidoglycan-binding domain 1 protein [Cellulomonas fimi ATCC 484] Length = 635 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +R L G++ V+ ++RL G P F ++A +Q HGL P ++ Sbjct: 78 VRMLRRGHTGEDVRHAQDRLNAHGAAPPLVTDG-IFGPLTQAATTQYQRTHGLSPDAVIG 136 Query: 159 SSTLEAMNVPVDL 171 T ++ P D+ Sbjct: 137 PRTSASLEGPTDV 149 >gi|326777088|ref|ZP_08236353.1| ErfK/YbiS/YcfS/YnhG family protein [Streptomyces cf. griseus XylebKG-1] gi|326657421|gb|EGE42267.1| ErfK/YbiS/YcfS/YnhG family protein [Streptomyces cf. griseus XylebKG-1] Length = 343 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 4/129 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G+ S V+ L+ RL G + + + + AV+ FQ + L +G D+ T Sbjct: 138 MRTGSESDRVRELQARLRQIGHF--GRNPTGYYGSVTADAVRSFQAKRRLPVTGSTDAVT 195 Query: 162 L-EAMNVPVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVENGKVGLRSTV 219 + + +L R +++ + R + ++ + +L + +GKV V Sbjct: 196 WQRLLAMTRVPTAEELDPPTERPLAAPDERCLKGRVLCISKESRTLAWMRDGKVLSAMDV 255 Query: 220 IVGRVDRQT 228 G T Sbjct: 256 RFGSEYTPT 264 >gi|309810394|ref|ZP_07704228.1| Tat pathway signal sequence domain protein [Dermacoccus sp. Ellin185] gi|308435634|gb|EFP59432.1| Tat pathway signal sequence domain protein [Dermacoccus sp. Ellin185] Length = 233 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V L++RL G + AF A + AV Q GL G+V + + Sbjct: 39 LQTGSKGSAVTTLQKRLNALGYWCGNPDG--AFGAQTKQAVLAVQKVAGLARDGVVGARS 96 Query: 162 LEAMN--VPVDLR 172 +A+N V R Sbjct: 97 WDALNRGVRPSSR 109 >gi|218782967|ref|YP_002434285.1| peptidoglycan-binding domain 1 protein [Desulfatibacillum alkenivorans AK-01] gi|218764351|gb|ACL06817.1| Peptidoglycan-binding domain 1 protein [Desulfatibacillum alkenivorans AK-01] Length = 616 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 I + LG+ V +++ LI G S + A+K FQ G+ G+ Sbjct: 541 INRIGLGDKGPLVNWIQDVLIHGGY---SLSKDGVYGPRTSKAIKSFQTDFGIRADGVAG 597 Query: 159 SSTLEAM 165 +T+ M Sbjct: 598 PTTIGLM 604 >gi|125974872|ref|YP_001038782.1| gamma-D-glutamyl-{L}-meso-diaminopimelate peptidase I. metallo peptidase. MEROPS family M14C [Clostridium thermocellum ATCC 27405] gi|125715097|gb|ABN53589.1| gamma-D-glutamyl-{L}-meso-diaminopimelate peptidase I, Metallo peptidase, MEROPS family M14C [Clostridium thermocellum ATCC 27405] Length = 423 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 2/62 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+ V+ + L G P + + AV FQ +GL G+V +T Sbjct: 4 LRLGSVGPDVKLAQSLLNKIGY--PVGAVDGIYGTRTRQAVIAFQRNNGLVADGIVGPAT 61 Query: 162 LE 163 Sbjct: 62 WS 63 >gi|329731573|gb|EGG67935.1| peptidase, S41 family [Staphylococcus epidermidis VCU144] Length = 490 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + H G +V+ ++ L G P + FD +ESA+K FQ + L +G D Sbjct: 404 KTYHQGEKDKNVKTMKIGLKALGY--PIDNETNIFDEQLESAIKTFQQDNNLKVNGNFDK 461 Query: 160 ST 161 T Sbjct: 462 KT 463 >gi|311068639|ref|YP_003973562.1| carboxy-terminal processing protease [Bacillus atrophaeus 1942] gi|310869156|gb|ADP32631.1| carboxy-terminal processing protease [Bacillus atrophaeus 1942] Length = 466 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 14/111 (12%) Query: 76 AQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 Q + A+ Y + P L + G+S +V+ ++ L G ++ + Sbjct: 359 PQVKAALPDYAKL------PYLDADKTYKSGDSGNNVKVAQQMLKALGY---KVNVNSTY 409 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSST----LEAMNVPVDLRIRQLQVNLM 181 D E+ VK FQ + L +G++ T + + + Q++ + Sbjct: 410 DKAFETVVKQFQAKEKLKETGVLTGDTTTKLMTELQGKLSDNDTQMKQAIE 460 >gi|251810854|ref|ZP_04825327.1| S41A family carboxy-terminal peptidase [Staphylococcus epidermidis BCM-HMP0060] gi|282876140|ref|ZP_06285007.1| C-terminal processing peptidase [Staphylococcus epidermidis SK135] gi|251805534|gb|EES58191.1| S41A family carboxy-terminal peptidase [Staphylococcus epidermidis BCM-HMP0060] gi|281295165|gb|EFA87692.1| C-terminal processing peptidase [Staphylococcus epidermidis SK135] gi|329737198|gb|EGG73452.1| peptidase, S41 family [Staphylococcus epidermidis VCU028] Length = 491 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + H G +V+ ++ L G P + FD +ESA+K FQ + L +G D Sbjct: 405 KTYHQGEKDKNVKTMKIGLKALGY--PIDNETNIFDEQLESAIKTFQQDNNLKVNGNFDK 462 Query: 160 ST 161 T Sbjct: 463 KT 464 >gi|57866912|ref|YP_188573.1| carboxyl-terminal protease [Staphylococcus epidermidis RP62A] gi|81674603|sp|Q5HPB7|CTPAL_STAEQ RecName: Full=Probable CtpA-like serine protease gi|57637570|gb|AAW54358.1| carboxyl-terminal protease [Staphylococcus epidermidis RP62A] Length = 491 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + H G +V+ ++ L G P + FD +ESA+K FQ + L +G D Sbjct: 405 KTYHQGEKDKNVKTMKIGLKALGY--PIDNETNIFDEQLESAIKTFQQDNNLKVNGNFDK 462 Query: 160 ST 161 T Sbjct: 463 KT 464 >gi|27468031|ref|NP_764668.1| carboxy-terminal processing protease [Staphylococcus epidermidis ATCC 12228] gi|293366606|ref|ZP_06613283.1| carboxy-terminal processing protease [Staphylococcus epidermidis M23864:W2(grey)] gi|81843763|sp|Q8CSK8|CTPAL_STAES RecName: Full=Probable CtpA-like serine protease gi|27315576|gb|AAO04710.1|AE016747_207 carboxy-terminal processing protease [Staphylococcus epidermidis ATCC 12228] gi|291319375|gb|EFE59744.1| carboxy-terminal processing protease [Staphylococcus epidermidis M23864:W2(grey)] gi|329735325|gb|EGG71617.1| peptidase, S41 family [Staphylococcus epidermidis VCU045] Length = 491 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + H G +V+ ++ L G P + FD +ESA+K FQ + L +G D Sbjct: 405 KTYHQGEKDKNVKTMKIGLKALGY--PIDNETNIFDEQLESAIKTFQQDNNLKVNGNFDK 462 Query: 160 ST 161 T Sbjct: 463 KT 464 >gi|257064653|ref|YP_003144325.1| negative regulator of beta-lactamase expression [Slackia heliotrinireducens DSM 20476] gi|256792306|gb|ACV22976.1| negative regulator of beta-lactamase expression [Slackia heliotrinireducens DSM 20476] Length = 248 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V++L+ L G G S FDAY E A++ FQ+ GL+P G+ T + + Sbjct: 29 QGQDVEQLQTALGALGF--ACGGASGTFDAYTEGALRKFQLNMGLEPDGIAGLKTYDTL 85 >gi|56963703|ref|YP_175434.1| cell wall lytic activity [Bacillus clausii KSM-K16] gi|56909946|dbj|BAD64473.1| cell wall lytic activity [Bacillus clausii KSM-K16] Length = 307 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 8/65 (12%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + G+ + +V+ ++ +L I D F E V+ FQ +GL G+V + Sbjct: 70 TVRFGDRNETVREVQAKLGIPAD--------GIFGPQTEKEVREFQANNGLAADGIVGPA 121 Query: 161 TLEAM 165 T +A+ Sbjct: 122 TKKAL 126 >gi|23008969|ref|ZP_00050195.1| COG3409: Putative peptidoglycan-binding domain-containing protein [Magnetospirillum magnetotacticum MS-1] Length = 151 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 8/94 (8%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN--VP 168 + L++RL G + F + AV Q GL G+V +T A++ V Sbjct: 1 MVALQQRLADLGYFIGAPDGD--FGGGTQQAVWALQKAAGLSRDGVVGPATQAALDEGVT 58 Query: 169 VDLRI---RQLQVNLMRIKKLLEQKMGLRYVLVN 199 R + ++++L R + LL + G +VN Sbjct: 59 PQPRSGSGKVVEIDLDR-QLLLAVEDGRVVTVVN 91 >gi|153953613|ref|YP_001394378.1| gamma-D-glutamyl-L-diamino acid endopeptidase [Clostridium kluyveri DSM 555] gi|219854235|ref|YP_002471357.1| hypothetical protein CKR_0892 [Clostridium kluyveri NBRC 12016] gi|146346494|gb|EDK33030.1| Predicted gamma-D-glutamyl-L-diamino acid endopeptidase [Clostridium kluyveri DSM 555] gi|219567959|dbj|BAH05943.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 423 Score = 51.0 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LG+ V ++ L G + + + AV++FQ HGL G++ +T Sbjct: 4 FKLGSRGTEVMHIQATLKKIGY--NPGVIDGIYGTDTKKAVEIFQRNHGLIVDGIIGPNT 61 Query: 162 LEAM 165 + Sbjct: 62 YRIL 65 >gi|328884811|emb|CCA58050.1| hypothetical protein SVEN_4764 [Streptomyces venezuelae ATCC 10712] Length = 380 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 11/95 (11%) Query: 92 GGWPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GG P P+ PL G++ V+ L+ L G +F E AV+ FQ Sbjct: 243 GGDPAPPVWPLLRTGDTGERVRALQHLLAGRG---APLVPDGSFGPATEQAVRDFQRLVR 299 Query: 151 LDPSGMVDSSTLEAMNVPV-------DLRIRQLQV 178 P G+ T + VPV +R Q+ + Sbjct: 300 ARPDGLAGDQTWHQLGVPVRAGDAGEAVRAVQVLL 334 Score = 46.8 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 12/98 (12%) Query: 76 AQTEKAIAFYQDILSR--------GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS 127 TE+A+ +Q ++ W +L + P+ G++ +V+ ++ L G + Sbjct: 285 PATEQAVRDFQRLVRARPDGLAGDQTWHQLGV-PVRAGDAGEAVRAVQVLLGARGVPAEA 343 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 GL F +AV FQ GL G+VD+ TL + Sbjct: 344 DGL---FGPGTAAAVASFQSGAGLPADGLVDARTLGRL 378 >gi|305673895|ref|YP_003865567.1| putative phage N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. spizizenii str. W23] gi|305412139|gb|ADM37258.1| putative phage N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. spizizenii str. W23] Length = 207 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 7/64 (10%) Query: 109 VSVQRLRERLIISGDLDPSK----GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST--- 161 +V++++ L K G+ + AV+ FQ+ +GL G+ T Sbjct: 142 DAVEQIQTALAALHFYPDKKAKNFGIDSYYGPQTADAVRRFQLMYGLSADGIYGPKTKAK 201 Query: 162 LEAM 165 +EA+ Sbjct: 202 IEAL 205 >gi|182436464|ref|YP_001824183.1| hypothetical protein SGR_2671 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464980|dbj|BAG19500.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 206 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 4/129 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G+ S V+ L+ RL G + + + + AV+ FQ + L +G D+ T Sbjct: 1 MRTGSESDRVRELQARLRQIGHF--GRNPTGYYGSVTADAVRSFQAKRRLPVTGSTDAVT 58 Query: 162 L-EAMNVPVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVENGKVGLRSTV 219 + + +L R +++ + R + ++ + +L + +GKV V Sbjct: 59 WQRLLAMTRVPTAEELDPPTERPLAAPDERCLKGRVLCISKESRTLAWMRDGKVLSAMDV 118 Query: 220 IVGRVDRQT 228 G T Sbjct: 119 RFGSEYTPT 127 >gi|225452586|ref|XP_002275671.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 303 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 7/73 (9%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVA-------FDAYVESAVKLFQMRHGLDPSG 155 G+ + ++++ L G L + + FD +ESA+K FQ + L P+G Sbjct: 43 QKGDKVEGIHKVKKYLQHFGYLGSTHSQTETQVDSEDHFDDALESAIKAFQTYYHLKPTG 102 Query: 156 MVDSSTLEAMNVP 168 ++D+ T M+ Sbjct: 103 ILDAPTATQMSRT 115 >gi|167757364|ref|ZP_02429491.1| hypothetical protein CLORAM_02914 [Clostridium ramosum DSM 1402] gi|167703539|gb|EDS18118.1| hypothetical protein CLORAM_02914 [Clostridium ramosum DSM 1402] Length = 248 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 9/138 (6%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD 87 + + S + N S + + + P S+ + + Sbjct: 114 DNGVQVSTCANVSNGSKSRKWTKHGKSPYIDYGTTVSTPAPEPSQP----VDDWLNRLNA 169 Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 ++R G+ P + G + ++ERL G + + F + A+ +FQ Sbjct: 170 EIARQGFSSYP--TVKKGAKGGITRLIQERLNSVGF---NLVVDGDFGKKTKEAIIVFQR 224 Query: 148 RHGLDPSGMVDSSTLEAM 165 GL G+V S+T + + Sbjct: 225 NRGLVQDGVVGSNTWDWL 242 >gi|304404313|ref|ZP_07385975.1| spore cortex-lytic enzyme [Paenibacillus curdlanolyticus YK9] gi|304347291|gb|EFM13123.1| spore cortex-lytic enzyme [Paenibacillus curdlanolyticus YK9] Length = 261 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + +G+S V L+ RL G + F +AVK FQ + G+ G Sbjct: 33 TFSSATIKMGSSGKDVYELQGRLKFLGFYSGKVDGN--FGTTTLNAVKWFQWKFGMTADG 90 Query: 156 MVDSS 160 +V + Sbjct: 91 VVGAK 95 >gi|194015644|ref|ZP_03054260.1| N-acetylmuramoyl-L-alanine amidase XlyB (Cellwall hydrolase) (Autolysin) [Bacillus pumilus ATCC 7061] gi|194013048|gb|EDW22614.1| N-acetylmuramoyl-L-alanine amidase XlyB (Cellwall hydrolase) (Autolysin) [Bacillus pumilus ATCC 7061] Length = 267 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 16/123 (13%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH-- 103 D+F +A G S + E+++ KA Q + LP L Sbjct: 144 GRW-DQFKAGIATARTGSKSTRKPVRTESLSH--KAPVTKQKSSN------LPSGILKIT 194 Query: 104 -LGNSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 V +++ L + G+ + + +AVK FQ+ +GL G+ Sbjct: 195 KPLTKGPQVIAVQKALSSLYFYPDKGAKNNGIDGYYGSKTANAVKRFQLMNGLAADGIYG 254 Query: 159 SST 161 T Sbjct: 255 PKT 257 >gi|119511006|ref|ZP_01630127.1| Peptidoglycan-binding domain 1 protein [Nodularia spumigena CCY9414] gi|119464351|gb|EAW45267.1| Peptidoglycan-binding domain 1 protein [Nodularia spumigena CCY9414] Length = 292 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 15/93 (16%) Query: 76 AQTEKAIAF--YQDILSRG-GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 +T AI YQ+ G G P + L LG+ +V ++ L + + Sbjct: 209 PETRNAIFRNGYQNGYQSGTGGPVI----LGLGSRGSAVTEIQRALGVE--------PTG 256 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + V+ FQ R+ L G+V T A+ Sbjct: 257 YYGPTTTRVVREFQARNYLRVDGIVGPETRSAI 289 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 8/64 (12%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+ S +V ++ L + + + V+ FQ R+ L G+V T Sbjct: 160 LSLGSRSSAVTEVQRALGV--------QPTGYYGPTTTRVVRQFQARNNLRVDGIVGPET 211 Query: 162 LEAM 165 A+ Sbjct: 212 RNAI 215 >gi|283770491|ref|ZP_06343383.1| ctpA serine protease [Staphylococcus aureus subsp. aureus H19] gi|283460638|gb|EFC07728.1| ctpA serine protease [Staphylococcus aureus subsp. aureus H19] Length = 496 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 SKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|282916688|ref|ZP_06324446.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus D139] gi|282319175|gb|EFB49527.1| ctpA-like serine protease [Staphylococcus aureus subsp. aureus D139] Length = 496 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 SKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|325983405|ref|YP_004295807.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas sp. AL212] gi|325532924|gb|ADZ27645.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas sp. AL212] Length = 392 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 53/175 (30%), Gaps = 55/175 (31%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKV-----GLRSTVIVGRVDRQTPILHSRINRIMFNPY 243 + +++N+ A L K + V +GRV+ +TP +RI NP Sbjct: 122 PDAPRQGIVINLAAMRLFYFPQTKPGEPQRVITHPVGIGRVEWKTPEGMTRITAKNKNPS 181 Query: 244 WVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPG 303 W+ SI +K+ ++ PG Sbjct: 182 WIPTPSI-RKE----------------------------------HAKNGNPLPAIVPPG 206 Query: 304 KINAMA--STKIEFYSRNNTYMHDT---PEPILFNNVVRFETSGCVRVRNIIDLD 353 N M ++ + H T P L R + GCVR+ D+ Sbjct: 207 PDNPMGAHVLRLAWP-SYAI--HGTDKPPSIGL-----RG-SHGCVRM-YPEDIA 251 >gi|257869674|ref|ZP_05649327.1| carboxyl-terminal protease [Enterococcus gallinarum EG2] gi|257803838|gb|EEV32660.1| carboxyl-terminal protease [Enterococcus gallinarum EG2] Length = 473 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G SS +V RL + L G + FD SAV+ Q + L+ +G V++ Sbjct: 388 KELKEGQSSEAVDRLNQFLSALGY----RTTGDTFDQTTVSAVQAVQQKAELEVTGKVNA 443 Query: 160 STLEAMNVPVDLRIRQ 175 T +A+ V +++Q Sbjct: 444 ETAQAIEKAVTDQLKQ 459 >gi|331082131|ref|ZP_08331259.1| hypothetical protein HMPREF0992_00183 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405726|gb|EGG85256.1| hypothetical protein HMPREF0992_00183 [Lachnospiraceae bacterium 6_1_63FAA] Length = 163 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPS 154 P +PL +G+S +++++E+L + P+ + F ++AVK FQ GL + Sbjct: 79 PGQPLDIGSSGSKIRQIQEQLNAIANAYPALPKISVDGVFGENTQNAVKKFQQIFGLPAT 138 Query: 155 GMVDSSTLEAM 165 G++D ST + Sbjct: 139 GIIDYSTWYEI 149 >gi|291485863|dbj|BAI86938.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. natto BEST195] Length = 313 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 7/71 (9%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+ G+ V+R+++ L + G+ + +AVK FQ +GL Sbjct: 241 TNPMRKGD---DVRRIQKALAALYFYPDKGAKNNGIDGVYGPKTANAVKRFQSMYGLTQD 297 Query: 155 GMVDSSTLEAM 165 G+ S T + Sbjct: 298 GIYGSKTKAKL 308 >gi|156742786|ref|YP_001432915.1| peptidoglycan binding domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156234114|gb|ABU58897.1| Peptidoglycan-binding domain 1 protein [Roseiflexus castenholzii DSM 13941] Length = 554 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 1/66 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R + G+ V ++ L G P + F A FQ GL P G++ Sbjct: 156 RMISYGSQGPDVADAQQLLNQHGAAPPLA-VDGIFGPKTRQATIAFQKSRGLAPDGIIGP 214 Query: 160 STLEAM 165 T A+ Sbjct: 215 LTWGAL 220 >gi|296087731|emb|CBI34987.3| unnamed protein product [Vitis vinifera] Length = 296 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 7/73 (9%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVA-------FDAYVESAVKLFQMRHGLDPSG 155 G+ + ++++ L G L + + FD +ESA+K FQ + L P+G Sbjct: 36 QKGDKVEGIHKVKKYLQHFGYLGSTHSQTETQVDSEDHFDDALESAIKAFQTYYHLKPTG 95 Query: 156 MVDSSTLEAMNVP 168 ++D+ T M+ Sbjct: 96 ILDAPTATQMSRT 108 >gi|224584279|ref|YP_002638077.1| periplasmic protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468806|gb|ACN46636.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 321 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P + I+ K + + + V Sbjct: 151 ANPTWT-PTANIR---------------------ARYKAQGIDLPAVV------------ 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 -PAGPDNPMGHHAIRLAAHGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|226358218|ref|YP_002787957.1| peptidoglycan-binding domain 1 protein [Deinococcus deserti VCD115] gi|226319861|gb|ACO47855.1| putative peptidoglycan-binding domain 1 protein [Deinococcus deserti VCD115] Length = 241 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 I+ W +L I + G+S+ +V+ ++++L +G S + F + SAV+ FQ Sbjct: 5 IVGGNTWEKL-IATVQQGDSNTAVRAVQDQL-RNGYGYGSVTIDGVFGSGTNSAVRDFQS 62 Query: 148 RHGLDPSGMVDSSTLEAM 165 + GL G+V +T ++ Sbjct: 63 KRGLGVDGVVGLNTWHSL 80 >gi|323339888|ref|ZP_08080157.1| carboxy-terminal processing protease CtpA [Lactobacillus ruminis ATCC 25644] gi|323092761|gb|EFZ35364.1| carboxy-terminal processing protease CtpA [Lactobacillus ruminis ATCC 25644] Length = 481 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L L +S SV+ L++ L G + + F + AV+ +Q + L +G D+ Sbjct: 395 KELKLDDSGSSVESLQKMLNFLGY--DAGKENGYFSEKTQKAVEAYQKENKLTVNGKADT 452 Query: 160 STLEAMNVPVDLRIRQ 175 TL + + +I Q Sbjct: 453 KTLTTLETQISQKINQ 468 >gi|319650801|ref|ZP_08004939.1| hypothetical protein HMPREF1013_01545 [Bacillus sp. 2_A_57_CT2] gi|317397499|gb|EFV78199.1| hypothetical protein HMPREF1013_01545 [Bacillus sp. 2_A_57_CT2] Length = 205 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+ L G++ V ++ L G + + + E+AV+ FQ GL Sbjct: 22 PKADAAVLKNGSAGPEVTYIQSALQKLGYFNTDN--TGYYGTVTENAVRNFQYDFGLAAD 79 Query: 155 GMVDSST 161 G+V +T Sbjct: 80 GIVGVNT 86 >gi|220929205|ref|YP_002506114.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium cellulolyticum H10] gi|219999533|gb|ACL76134.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium cellulolyticum H10] Length = 236 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 R L G+ V ++ERL G + + S ++ ++ A+ FQ H L Sbjct: 167 RNLKPGDRGSDVLAVQERLKQLGYFNGYE--SGIYEDDLKEAIFQFQKDHNLKV 218 >gi|187934789|ref|YP_001887348.1| spore cortex-lytic enzyme, pre-pro-form [Clostridium botulinum B str. Eklund 17B] gi|187722942|gb|ACD24163.1| spore cortex-lytic enzyme, pre-pro-form [Clostridium botulinum B str. Eklund 17B] Length = 792 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 25/129 (19%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P PL L + + +V+ ++++L + + FD E AVK+FQ L Sbjct: 324 PGTPLRLNDENNNVKVIQKQLNRISQNFPAIPKIPYENGKFDKSTEDAVKVFQKVFNLTQ 383 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ--------KMGLRYVLVNIPAASL 205 G+V +T RI + V + R+ +L ++ G Y P L Sbjct: 384 DGIVGRATWY--------RISSIYVGVKRLAELDQEPEIDGENPPPGGEY-----PGYLL 430 Query: 206 EAVENGKVG 214 + G+ Sbjct: 431 KYGSRGEKV 439 Score = 44.4 bits (104), Expect = 0.034, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLII--SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 P L G+ V+ ++ L + PS F + AV FQ GL P G Sbjct: 426 PGYLLKYGSRGEKVKEVQSYLSVISKSYNIPSIKADGIFGQMTKDAVIAFQRLFGLAPDG 485 Query: 156 MVDSSTLE 163 ++ +T Sbjct: 486 IIGINTWN 493 Score = 41.7 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSV---QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L LG+ V Q+ L + L + FD E A+K Q + GL + Sbjct: 704 PGFDLELGDRDGYVTVFQKYINVLAKNNYLSNQIIENGVFDKRTEKAIKELQEKFGLKVT 763 Query: 155 GMVDSSTL 162 G+VD T Sbjct: 764 GIVDKLTW 771 Score = 40.2 bits (93), Expect = 0.61, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 10/89 (11%) Query: 85 YQDILSRGGWPEL--------PIRPLHLGNSSVSVQRLRERLII--SGDLDPSKGLSVAF 134 Y+D++ G +L P L G+ V+ ++ L + PS F Sbjct: 499 YKDLIKGTGQQDLNEDFDGKYPGYLLSYGSRGEKVREMQTYLSVISKSYNIPSINADGIF 558 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +AV FQ GL G+V +T Sbjct: 559 GEMTRNAVLSFQRLFGLAQDGVVGLNTWN 587 >gi|34496770|ref|NP_900985.1| hypothetical protein CV_1315 [Chromobacterium violaceum ATCC 12472] gi|34102625|gb|AAQ58990.1| probable phage-related protein [Chromobacterium violaceum ATCC 12472] Length = 264 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 6/93 (6%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ L+ G+ V+ L+ RL G + + + E AV Q R GL SG+ Sbjct: 1 MQALNKGSCGQEVRELQTRLNCQG---ARLLVDGWYGSATEQAVAKLQRRAGLVVSGVAG 57 Query: 159 SSTLEAMNVPVDLRI---RQLQVNLMRIKKLLE 188 S+TL A+ D R L ++ L Sbjct: 58 SATLAALRGQRDPRRLGETDLIAAAESLRLPLP 90 >gi|72537711|ref|YP_293741.1| gp28-like protein [Burkholderia phage phi52237] gi|254188181|ref|ZP_04894693.1| putative peptidoglycan binding domain [Burkholderia pseudomallei Pasteur 52237] gi|72398401|gb|AAZ72636.1| gp28-like protein [Burkholderia phage phi52237] gi|157935861|gb|EDO91531.1| putative peptidoglycan binding domain [Burkholderia pseudomallei Pasteur 52237] Length = 270 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L++RL+ +G +S +D E AV+ Q GL G+ Sbjct: 4 LRFNDHGAEVGLLQQRLVRAGY---PVDVSHLYDEQTERAVQTLQAAAGLVVDGIAGPKM 60 Query: 162 LEAM 165 + Sbjct: 61 YRVL 64 >gi|260583839|ref|ZP_05851587.1| carboxyl protease [Granulicatella elegans ATCC 700633] gi|260158465|gb|EEW93533.1| carboxyl protease [Granulicatella elegans ATCC 700633] Length = 485 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 3/75 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G S +V + L G S FD + AVK +Q + GL +G VD Sbjct: 401 TLKVGTVSQNVLSVETILKGLGY---SVTADGYFDEATKEAVKAYQQKEGLTATGEVDEE 457 Query: 161 TLEAMNVPVDLRIRQ 175 T + + V I+Q Sbjct: 458 TAQKLMNSVRELIQQ 472 >gi|307152104|ref|YP_003887488.1| hypothetical protein Cyan7822_2234 [Cyanothece sp. PCC 7822] gi|306982332|gb|ADN14213.1| protein of unknown function DUF187 [Cyanothece sp. PCC 7822] Length = 423 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G VQ ++ L G + F ++AV FQ +GL G+V T Sbjct: 359 GMRGDDVQEIQRLLQNRGFYRGKLNGNFGF--RTKAAVTAFQKANGLKNDGIVGPLTYRQ 416 Query: 165 M 165 + Sbjct: 417 L 417 >gi|320086345|emb|CBY96118.1| Uncharacterized protein ycfS Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 321 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + +D + P Sbjct: 151 ANPTWTPTATI-----------------RARYK----------AQGIDLPAVVP------ 177 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 178 --AGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|17232476|ref|NP_489024.1| hypothetical protein alr4984 [Nostoc sp. PCC 7120] gi|17134122|dbj|BAB76683.1| alr4984 [Nostoc sp. PCC 7120] Length = 203 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L GNS ++V+ L+ L+ G G F A E+AVK FQ++ L G+V + Sbjct: 140 TLRFGNSGLAVRALQRLLVAKGYAIRVDGN---FGALTETAVKAFQIQRNLSVDGVVGFN 196 Query: 161 TLEAM 165 T ++ Sbjct: 197 TWYSL 201 >gi|304317987|ref|YP_003853132.1| carboxyl-terminal protease [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779489|gb|ADL70048.1| carboxyl-terminal protease [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 455 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + + + G++ V+ L+ L + G + F A+ FQ G+ +G+ Sbjct: 366 VYTKDIKKGDTGNDVKLLQSYLSLLGYYKGEP--NGYFGNDTYDAIVSFQKYAGIPATGV 423 Query: 157 VDSSTLEAM 165 +D T +A+ Sbjct: 424 LDRGTTDAL 432 >gi|194363931|ref|YP_002026541.1| peptidoglycan-binding domain 1 protein [Stenotrophomonas maltophilia R551-3] gi|194346735|gb|ACF49858.1| Peptidoglycan-binding domain 1 protein [Stenotrophomonas maltophilia R551-3] Length = 665 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 G S V++++E+L G + F ++AV+ Q +GL G+V Sbjct: 466 YKQGAHSEGVRKVQEQLGHLGYVGADGKPLVEDGRFGRNTDAAVRQLQKDNGLVVDGIVG 525 Query: 159 SSTLEAMNVPVDLRIRQLQVNLMR 182 + TLEA+ D R R L +N R Sbjct: 526 AKTLEAI---KDARERPL-LNDER 545 >gi|256752829|ref|ZP_05493670.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus CCSD1] gi|256748279|gb|EEU61342.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus CCSD1] Length = 110 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S V+ L++ L +G + + F ++AV Q + L P G+ T Sbjct: 29 LKYGMRSPEVRHLQQNLNKAGYFVTANP-TDYFGPATKNAVMRLQKDYNLVPDGIYGPLT 87 Query: 162 LEAM 165 +A+ Sbjct: 88 EKAL 91 >gi|153868973|ref|ZP_01998687.1| Peptidoglycan-binding domain 1 [Beggiatoa sp. PS] gi|152074467|gb|EDN71319.1| Peptidoglycan-binding domain 1 [Beggiatoa sp. PS] Length = 281 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDS 159 L LG+ V +L+E+L ++ +D + AV+ +Q + GL +G+ D Sbjct: 67 TLKLGDQGALVAKLQEKLTERKYY--QGKITGFYDENTQKAVRQYQTEYFGLPATGIADP 124 Query: 160 ST 161 T Sbjct: 125 LT 126 >gi|119493546|ref|ZP_01624211.1| hypothetical protein L8106_25882 [Lyngbya sp. PCC 8106] gi|119452600|gb|EAW33782.1| hypothetical protein L8106_25882 [Lyngbya sp. PCC 8106] Length = 196 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 ++ + L+ G+ +V+ L+ RL +G G F VK FQ R GL G Sbjct: 128 DVNMPELYQGSVGDAVECLQLRLYDNGFFLFIDG---IFGPKTLEVVKAFQRREGLKVDG 184 Query: 156 MVDSSTLEAM 165 +V T + Sbjct: 185 IVGVQTWRKL 194 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 49/113 (43%), Gaps = 13/113 (11%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQR 113 + + ++ S + + A + A + I +LP+ L LG + +V+ Sbjct: 2 SAMTNIETNGKSTVSTATIPASASVQSAAVQSRGI-------DLPL--LKLGAAGEAVRF 52 Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDSSTLEAM 165 ++R I +G G + + +++AV+ FQ + GL G++ +T + Sbjct: 53 AQQRFIANGY---RIGFNGQYGPQMKAAVEHFQRNYGGLVVDGIIGENTWRVL 102 >gi|117919296|ref|YP_868488.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sp. ANA-3] gi|117611628|gb|ABK47082.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sp. ANA-3] Length = 304 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 52/160 (32%) Query: 196 VLVNIPAASLEAVENGKVGLRS-TVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSI--- 250 +++N+ L GK + + +G++ + TP + + R NP W I Sbjct: 98 IVINVAEMRLYYYPKGKNTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKE 157 Query: 251 --IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + +++ + W G N M Sbjct: 158 YAARGEILPAV----------------------------W------------PAGPDNPM 177 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + H T F +R + GCVR+R+ Sbjct: 178 GLYALYIGNLYAI--HGTNAS--FGIGLR-VSQGCVRLRH 212 >gi|224092308|ref|XP_002309552.1| predicted protein [Populus trichocarpa] gi|222855528|gb|EEE93075.1| predicted protein [Populus trichocarpa] Length = 243 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 5/68 (7%) Query: 103 HLGNSSVSVQRLRERLIISGDLDP-----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G+ V +L++ L G L+ + FD +E A+K +Q+ L P+G++ Sbjct: 48 KKGDKVEGVDQLKKLLHHFGYLNHGGLNNDEVDDDYFDETIERALKTYQINFNLKPTGVL 107 Query: 158 DSSTLEAM 165 D+ T+ M Sbjct: 108 DAETVSLM 115 >gi|24375244|ref|NP_719287.1| LysM domain-containing protein [Shewanella oneidensis MR-1] gi|24350038|gb|AAN56731.1|AE015808_7 LysM domain protein [Shewanella oneidensis MR-1] Length = 304 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 52/160 (32%) Query: 196 VLVNIPAASLEAVENGKVGLRS-TVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSI--- 250 +++N+ L GK + + +G++ + TP + + R NP W I Sbjct: 98 IVINVAEMRLYYYPKGKKTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKE 157 Query: 251 --IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + +++ + W G N M Sbjct: 158 YAARGEILPAV----------------------------W------------PAGPDNPM 177 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + H T F +R + GCVR+R+ Sbjct: 178 GLYALYIGNLYAI--HGTNAS--FGIGLR-VSQGCVRLRH 212 >gi|114046387|ref|YP_736937.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sp. MR-7] gi|113887829|gb|ABI41880.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sp. MR-7] Length = 304 Score = 50.6 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 52/160 (32%) Query: 196 VLVNIPAASLEAVENGKVGLRS-TVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSI--- 250 +++N+ L GK + + +G++ + TP + + R NP W I Sbjct: 98 IVINVAEMRLYYYPKGKNTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKE 157 Query: 251 --IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + +++ + W G N M Sbjct: 158 YAARGEILPAV----------------------------W------------PAGPDNPM 177 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + H T F +R + GCVR+R+ Sbjct: 178 GLYALYIGNLYAI--HGTNAS--FGIGLR-VSQGCVRLRH 212 >gi|119484926|ref|ZP_01619408.1| hypothetical protein L8106_15675 [Lyngbya sp. PCC 8106] gi|119457744|gb|EAW38868.1| hypothetical protein L8106_15675 [Lyngbya sp. PCC 8106] Length = 135 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 24/118 (20%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL------HLGNS 107 F + + +D I+ +TI +A +PIR L G+ Sbjct: 31 EFQKKSGLTVDG---IVGPKTINILSQA-------------TSVPIRTLNSLPILRQGSK 74 Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V +++ L + + F E+A+K FQ GL G+V T A+ Sbjct: 75 GEDVIQIQNNLN--NYSGENLVVDGVFGNATEAAIKKFQAEKGLVVDGIVGRLTWNAL 130 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 ++ +L I G F A E+AVK FQ + GL G+V T+ ++ + I Sbjct: 4 IQAQLNIFG---AKLVEDGIFGATTEAAVKEFQKKSGLTVDGIVGPKTINILSQATSVPI 60 Query: 174 RQL 176 R L Sbjct: 61 RTL 63 >gi|218441711|ref|YP_002380040.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 7424] gi|218174439|gb|ACK73172.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 7424] Length = 217 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 39/154 (25%), Gaps = 52/154 (33%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 + + + V VG+ +TP + +++ NP W P Sbjct: 101 RVYVYQGDQEIGNYPVAVGKKGWETPTGDFAVMQMIVNPSWQNPW--------------- 145 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS--TKIEFYSRNNT 321 G+ V G N + +N Sbjct: 146 -------------NGRIV-------------------PAGPKNPLGERWIGFWTDGKNFI 173 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 H T L + GCVR+RN ++ Sbjct: 174 GFHGTAAEHLIGQ---AVSHGCVRMRNSDIKALY 204 >gi|281357197|ref|ZP_06243686.1| Peptidoglycan-binding domain 1 protein [Victivallis vadensis ATCC BAA-548] gi|281316228|gb|EFB00253.1| Peptidoglycan-binding domain 1 protein [Victivallis vadensis ATCC BAA-548] Length = 308 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 9/80 (11%) Query: 95 PELPIRP-------LHLGNSSVSVQRLRERLIISGDL--DPSKGLSVAFDAYVESAVKLF 145 P +P + + G S V L L++ L D G V +D +E +VK F Sbjct: 117 PVVPAKTYEYGERTIRSGMSGSDVATLATFLVLHKYLTMDVKPGKRVFYDWRIEESVKKF 176 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q L +G+ D+ T + + Sbjct: 177 QRDANLPETGICDAQTAKKL 196 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 15/92 (16%) Query: 79 EKAIAFYQD-ILSRGGWPELPIRPLHLGNSSVSV----------QRLRERLIISGDLDPS 127 ++ +A YQ+ I P +P + LG + + L +RL + + Sbjct: 209 KERLAGYQEKITPITPIPVIPSKTFKLGMRDLRIGCTGEDVTDFISLLQRLNLLDYSESM 268 Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 FD VE+AVK +Q + G +G+ D Sbjct: 269 D----FFDTKVEAAVKKYQKQTGRTETGVADK 296 >gi|314933610|ref|ZP_07840975.1| carboxyl- protease [Staphylococcus caprae C87] gi|313653760|gb|EFS17517.1| carboxyl- protease [Staphylococcus caprae C87] Length = 492 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + HLG+ + +V+ ++ L G S FD+ +ES +K FQ + L+ +G D Sbjct: 406 KTYHLGDENKNVKTMKIGLTALGY--KVNNESNQFDSELESTIKSFQKDNHLEVTGKFDK 463 Query: 160 ST 161 T Sbjct: 464 KT 465 >gi|291533713|emb|CBL06826.1| Cell wall-associated hydrolases (invasion-associated proteins) [Megamonas hypermegale ART12/1] Length = 251 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L L + V L++ LI +S +D + AVK FQ H + +G+V+ T Sbjct: 32 LKLNSHGHDVIVLQQNLIRMNY--DLSKVSGNYDKETQEAVKAFQKDHKIKVTGIVNRET 89 Query: 162 LEAM 165 A+ Sbjct: 90 WWAI 93 >gi|126175624|ref|YP_001051773.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS155] gi|152999445|ref|YP_001365126.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS185] gi|217972124|ref|YP_002356875.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS223] gi|304411043|ref|ZP_07392659.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS183] gi|307301834|ref|ZP_07581592.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica BA175] gi|125998829|gb|ABN62904.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS155] gi|151364063|gb|ABS07063.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS185] gi|217497259|gb|ACK45452.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS223] gi|304350578|gb|EFM14980.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS183] gi|306913872|gb|EFN44293.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica BA175] Length = 304 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 55/175 (31%), Gaps = 44/175 (25%) Query: 196 VLVNIPAASLEAVENGKVGLRS-TVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L GK + + +G++ + TP + + R NP W I +K Sbjct: 98 IVINVAEMRLYYYPKGKKTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRI-RK 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + A + W G N M + Sbjct: 157 EYAAKG----------------------EILPAVW------------PAGPDNPMGLYAL 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 + H T F +R + GCVR+R+ + L K+ P +R Sbjct: 183 YIGNLYAI--HGTNAS--FGIGLR-VSQGCVRLRH--EDIEHLFKNVPVGTRVQF 230 >gi|24372876|ref|NP_716918.1| general secretion pathway protein a [Shewanella oneidensis MR-1] gi|24346991|gb|AAN54363.1|AE015573_10 general secretion pathway protein a [Shewanella oneidensis MR-1] Length = 554 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P LP+ + +S +Q L L FD +E+ +K FQ +HGL Sbjct: 468 PNLPMMEISQKSSPGQLQWLENALAHV--AKRPSRRVSQFDLKLENDLKAFQSQHGLKAD 525 Query: 155 GMVDSSTLEAMN 166 G+ + TL +N Sbjct: 526 GIAGNQTLVRLN 537 >gi|117923807|ref|YP_864424.1| ErfK/YbiS/YcfS/YnhG family protein [Magnetococcus sp. MC-1] gi|117607563|gb|ABK43018.1| ErfK/YbiS/YcfS/YnhG family protein [Magnetococcus sp. MC-1] Length = 362 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 46/158 (29%), Gaps = 57/158 (36%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 +++N+P L V +GR TPI ++I R P W +P SI +++ Sbjct: 135 LVINLPEMRLYHRRADGRLETFPVGIGREGFDTPISRAKIIRKKSAPSWYVPASI-REE- 192 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 P PG N + Sbjct: 193 -------------------------------------NPKLPAVIPPGASNPLG------ 209 Query: 316 YSRNNTY-------MHDTPEPILFNNVVRFETSGCVRV 346 + Y +H T +P V + GC+R+ Sbjct: 210 --SHAIYLSLPGYLIHGTNKPYGIGRRV---SHGCIRM 242 >gi|113971426|ref|YP_735219.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sp. MR-4] gi|113886110|gb|ABI40162.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sp. MR-4] Length = 304 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 52/160 (32%) Query: 196 VLVNIPAASLEAVENGKVGLRS-TVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSI--- 250 +++N+ L GK + + +G++ + TP + + R NP W I Sbjct: 98 IVINVAEMRLYYYPKGKNTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKE 157 Query: 251 --IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAM 308 + +++ + W G N M Sbjct: 158 YAARGEILPAV----------------------------W------------PAGPDNPM 177 Query: 309 ASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + H T F +R + GCVR+R+ Sbjct: 178 GLYALYIGNLYAI--HGTNAS--FGIGLR-VSQGCVRLRH 212 >gi|120597701|ref|YP_962275.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sp. W3-18-1] gi|146294162|ref|YP_001184586.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella putrefaciens CN-32] gi|120557794|gb|ABM23721.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella sp. W3-18-1] gi|145565852|gb|ABP76787.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella putrefaciens CN-32] gi|319427505|gb|ADV55579.1| L,D-transpeptidase, YbiS [Shewanella putrefaciens 200] Length = 304 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 48/155 (30%), Gaps = 42/155 (27%) Query: 196 VLVNIPAASLEAVENGKVGLRS-TVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L GK + + +G++ + TP + + R NP W I +K Sbjct: 98 IVINVAEMRLYYYPKGKKTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRI-RK 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + A + W G N M + Sbjct: 157 EYAAKG----------------------EILPAVW------------PAGPDNPMGLYAL 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + H T F +R + GCVR+R+ Sbjct: 183 YIGNLYAI--HGTNAS--FGIGLR-VSQGCVRLRH 212 >gi|326442995|ref|ZP_08217729.1| hypothetical protein SclaA2_18108 [Streptomyces clavuligerus ATCC 27064] Length = 326 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 63/183 (34%), Gaps = 19/183 (10%) Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQD----ILSRGGWPELPIRPLHLGNSSVSVQRL 114 D P + A+T++A I + G + R G V+ L Sbjct: 71 ADAQRTRTTPKEQQAQKARTQRAPERPARSTDTIPAAGQATVVMSR----GAQGPRVREL 126 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRI 173 + RL G + + + AV+ FQ + GL +G+ D++T + + Sbjct: 127 QARLAQIGWFGSAP--TGFYGRLTADAVRGFQGKRGLSVTGLTDTTTWRKLRGMTTAPTA 184 Query: 174 RQLQ-------VNLMRIK-KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 +L + + +L + + R + ++ SL V +G V V G Sbjct: 185 EELSGTRKDPVKAAHKPRPRLDPRCLNGRVLCISKTTRSLSWVVDGTVRSTMDVRFGAEY 244 Query: 226 RQT 228 T Sbjct: 245 TPT 247 >gi|242092574|ref|XP_002436777.1| hypothetical protein SORBIDRAFT_10g008650 [Sorghum bicolor] gi|241915000|gb|EER88144.1| hypothetical protein SORBIDRAFT_10g008650 [Sorghum bicolor] Length = 370 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 H G + ++++ L G L S G + FDA +E A+K++Q GLD +G +D+ST Sbjct: 57 HFGEQQQGLAKVKDYLSHFGYLPESSSGFNDLFDADLEEAIKVYQRNFGLDVTGAMDAST 116 Query: 162 LEAM 165 + M Sbjct: 117 VAQM 120 >gi|296221444|ref|XP_002756745.1| PREDICTED: matrix metalloproteinase-21 [Callithrix jacchus] Length = 571 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 31/129 (24%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKA---IAFYQDILSRGGWPELPI 99 + + ++ D P+ + IA A ++ Y ++ W P Sbjct: 15 WLAAPGPTQPESLFHSRDHSDLEPSPLRQAQPIADLHAAQRFLSRYGWSGAQAAWGPSPE 74 Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 P P + + AV+ FQ + L SG +D+ Sbjct: 75 GP------------------------PETPKGTS----LAQAVRRFQRANALPASGELDA 106 Query: 160 STLEAMNVP 168 +TL AMN P Sbjct: 107 ATLAAMNQP 115 >gi|146311422|ref|YP_001176496.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter sp. 638] gi|145318298|gb|ABP60445.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter sp. 638] Length = 337 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 24/172 (13%), Positives = 56/172 (32%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L ++VN+ L G+ + + +G++ +TP+ +R+++ + NP W Sbjct: 89 MLLPDTPREGIVVNLAELRLYYFPPGENIVQVYPLGIGQLGLETPVSTTRVSQKIPNPTW 148 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I + + ++ G Sbjct: 149 TPTAGIRARSLAQGIK-----------------------------------LPPVVPAGP 173 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + + Y +H T P ++V +SGC+R+ ++ Sbjct: 174 NNPLGRFALRLGIGHGEYLIHGTSAP---DSVGLRVSSGCMRMNAPDIKALF 222 >gi|315658324|ref|ZP_07911196.1| carboxy-terminal processing protease CtpA [Staphylococcus lugdunensis M23590] gi|315496653|gb|EFU84976.1| carboxy-terminal processing protease CtpA [Staphylococcus lugdunensis M23590] Length = 483 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 H G+++ V+ ++ L G S FD +E A+K FQ + L +G D Sbjct: 398 SYHKGDNNKHVKAMKIGLTALGY--KVDNESKDFDDNLEQAIKAFQQDNNLTVNGQFDKE 455 Query: 161 T 161 T Sbjct: 456 T 456 >gi|297617789|ref|YP_003702948.1| peptidoglycan-binding lysin domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145626|gb|ADI02383.1| Peptidoglycan-binding lysin domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 381 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V +L++ L G +KG+ F SAV FQ + L G+V T +A+ Sbjct: 111 VSQLQKDLTFVGF--DTKGVDGCFGPATVSAVLSFQTANKLKADGIVGPETKKAL 163 Score = 45.2 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L LG V+++++ L + G+ + SAV FQ L G+ Sbjct: 44 KDLALGTYGEDVRQVQQCLSHLNY--NTGGIDGIYGPQTVSAVSAFQKDQQLVVDGIAGP 101 Query: 160 STLEAM 165 T A+ Sbjct: 102 ETQWAL 107 >gi|289550827|ref|YP_003471731.1| Probable carboxy-terminal processing proteinase ctpA [Staphylococcus lugdunensis HKU09-01] gi|289180359|gb|ADC87604.1| Probable carboxy-terminal processing proteinase ctpA [Staphylococcus lugdunensis HKU09-01] Length = 483 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 H G+++ V+ ++ L G S FD +E A+K FQ + L +G D Sbjct: 398 SYHKGDNNKHVKAMKIGLTALGY--KVDNESKDFDDNLEQAIKAFQQDNNLTVNGQFDKE 455 Query: 161 T 161 T Sbjct: 456 T 456 >gi|304315730|ref|YP_003850875.1| spore cortex-lytic enzyme [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777232|gb|ADL67791.1| spore cortex-lytic enzyme [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 238 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GNS V R++ RL G D + F AV+ FQ +GL+ +G+VD T A Sbjct: 42 GNSGSDVSRVQSRLKDWGYYDG--PVDGFFGVRTWLAVRKFQANNGLNVTGIVDDETKVA 99 Query: 165 M--NVPVDL 171 + N Sbjct: 100 LGFNTSTSA 108 >gi|328952431|ref|YP_004369765.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfobacca acetoxidans DSM 11109] gi|328452755|gb|AEB08584.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfobacca acetoxidans DSM 11109] Length = 314 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 49/163 (30%), Gaps = 48/163 (29%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 + ++VN L + + + +G +D +TP ++ NP W Sbjct: 97 WIVPDHPEHPIIVNTGEMRLYFFTDNFTKVITYPIGMGVLDFKTPTGVFKVTEKKTNPPW 156 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 +P+++ + +++ G Sbjct: 157 FVPKTLQ---------------AKYGMSVMES--------------------------GP 175 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 N + K+ Y +H T +P F V R + GC R+ Sbjct: 176 DNPLGKYKLTL--SWGDYGIHGTSQP--FG-VGRLVSHGCTRM 213 >gi|308069349|ref|YP_003870954.1| peptidoglycan-binding domain-containing protein [Paenibacillus polymyxa E681] gi|305858628|gb|ADM70416.1| Putative peptidoglycan-binding domain-containing protein [Paenibacillus polymyxa E681] Length = 163 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 7/82 (8%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 G+P L G+S V+ L+ L G + +F + V++ ++ FQ GL Sbjct: 38 NGFPT-----LRQGDSGGYVRALQANLWAYGQQGDVGKIDGSFGSGVKTGLQNFQRNKGL 92 Query: 152 DPSGMVDSSTLEAM--NVPVDL 171 G+ S T M NV +++ Sbjct: 93 SADGIAGSGTWNRMTYNVSIEV 114 >gi|291545276|emb|CBL18385.1| Putative peptidoglycan-binding domain-containing protein [Ruminococcus sp. 18P13] Length = 463 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHG 150 P P RPL G+SS V+ ++ RL + F +AV+ FQ Sbjct: 175 PSYPERPLQEGDSSDDVRAIQIRLRRIAQNYPAIPVIPDTDGVFGTPTAAAVEEFQRIFS 234 Query: 151 LDPSGMVDSSTLE 163 L +G+VD ST Sbjct: 235 LPATGVVDQSTWY 247 Score = 44.4 bits (104), Expect = 0.031, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G S+ V+ ++ L + G ++ + ++V+ FQ GL +G+++ Sbjct: 280 LRPGMESMQVKLVQYYLAVVGAYYEQVQPVEITGYYGDQTAASVRSFQQVFGLPQTGIIN 339 Query: 159 SSTLEAM 165 +T + Sbjct: 340 RATWNQL 346 Score = 41.0 bits (95), Expect = 0.39, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIIS-GDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G +S +V+ +E L G P+ + F SAV FQ GL+ + Sbjct: 369 PGTVLKEGTTSEAVRIAQEYLNFLHGVYPQIPAVNNTGYFGPVTRSAVLAFQRLMGLEEN 428 Query: 155 GMVDSSTLEAM 165 G++ T + + Sbjct: 429 GLIGPITWDEL 439 >gi|82751011|ref|YP_416752.1| carboxy-terminal processing proteinase [Staphylococcus aureus RF122] gi|94708711|sp|Q2YXZ9|CTPAL_STAAB RecName: Full=Probable CtpA-like serine protease gi|82656542|emb|CAI80964.1| carboxy-terminal processing proteinase [Staphylococcus aureus RF122] Length = 496 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENQVKAFQQTNKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|282899460|ref|ZP_06307426.1| hypothetical protein CRC_00907 [Cylindrospermopsis raciborskii CS-505] gi|281195617|gb|EFA70548.1| hypothetical protein CRC_00907 [Cylindrospermopsis raciborskii CS-505] Length = 313 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 18/33 (54%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + E+A+K FQ ++GL G++ +T + Sbjct: 279 IYGRQTEAAIKRFQQQNGLTADGIIGPATWGKL 311 Score = 44.1 bits (103), Expect = 0.048, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 5/89 (5%) Query: 92 GGWPELPIRPLH--LGNSSVSVQRLRERLIISG--DLDPSKGLSVAFD-AYVESAVKLFQ 146 G P P++P+ G+ S+ RL++ L D + F SAV+ FQ Sbjct: 168 GKLPTAPVKPVEDVTGDKDTSILRLQKALNQLKITDRNNRPLTEDNFTGPATSSAVEKFQ 227 Query: 147 MRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 G+ P+GM +T +A+N + R Q Sbjct: 228 RVVGIIPTGMATQTTWDAINQILAKRTVQ 256 >gi|238895185|ref|YP_002919920.1| putative ATP synthase subunit [Klebsiella pneumoniae NTUH-K2044] gi|238547502|dbj|BAH63853.1| putative ATP synthase subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 328 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 52/164 (31%), Gaps = 40/164 (24%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + ++VN+ L G+ + +G++ +TP + +R+ + + NP W Sbjct: 89 MLLPDVPREGIVVNLAELRLYYFPPGENQVQVYPLGIGQLGLETPEMTTRVGQKIPNPTW 148 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I + + + G Sbjct: 149 TPTAGIRARSL-----------------------------------EKGVTLPAVVPAGP 173 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR 347 N + + N Y +H T P ++V +SGC+R+ Sbjct: 174 NNPLGRYALRLAYGNGEYLIHGTNAP---DSVGLRVSSGCMRMN 214 >gi|227114591|ref|ZP_03828247.1| hypothetical protein PcarbP_16598 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 303 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 60/200 (30%), Gaps = 53/200 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRS-TVIVGRVDRQTPILHSRINRIMFN---PYWVIPRSII 251 +++N+ L G + + +G+ R TP + + + + P W Sbjct: 98 IVINVAEMRLYYYPKGSNTVEVLPIGIGQAGRDTP--TNWVTSVKYKKEGPTWT------ 149 Query: 252 QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAST 311 Y + P F G N M Sbjct: 150 -----PTAATHRDYARR---------------------GESLPAFF---PAGPENPMGLY 180 Query: 312 KIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR-----Y 366 I + H T F +R + GCVR+RN D +L ++ P +R Sbjct: 181 AIYIGNLYAI--HGTNAN--FGIGLR-ISQGCVRLRN--DDIKYLFENVPNGTRVQFINE 233 Query: 367 HIEEVVKTRKTTPVKLATEV 386 I+ ++ T +++ + Sbjct: 234 PIKVSLEPDGTHWIEVHEPL 253 >gi|152970684|ref|YP_001335793.1| putative ATP synthase subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262044179|ref|ZP_06017251.1| ErfK/srfK family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330012607|ref|ZP_08307442.1| protein ErfK/srfK [Klebsiella sp. MS 92-3] gi|150955533|gb|ABR77563.1| putative ATP synthase subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259038476|gb|EEW39675.1| ErfK/srfK family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328533766|gb|EGF60455.1| protein ErfK/srfK [Klebsiella sp. MS 92-3] Length = 328 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 52/164 (31%), Gaps = 40/164 (24%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + ++VN+ L G+ + +G++ +TP + +R+ + + NP W Sbjct: 89 MLLPDVPREGIVVNLAELRLYYFPPGENQVQVYPLGIGQLGLETPEMTTRVGQKIPNPTW 148 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I + + + G Sbjct: 149 TPTAGIRARSL-----------------------------------EKGVTLPAVVPAGP 173 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR 347 N + + N Y +H T P ++V +SGC+R+ Sbjct: 174 NNPLGRYALRLAYGNGEYLIHGTNAP---DSVGLRVSSGCMRMN 214 >gi|160874063|ref|YP_001553379.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS195] gi|160859585|gb|ABX48119.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS195] gi|315266295|gb|ADT93148.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella baltica OS678] Length = 304 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 48/155 (30%), Gaps = 42/155 (27%) Query: 196 VLVNIPAASLEAVENGKVGLRS-TVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L GK + + +G++ + TP + + R NP W I +K Sbjct: 98 IVINVAEMRLYYYPKGKKTVEVLPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRI-RK 156 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + A + W G N M + Sbjct: 157 EYAAKG----------------------EILPAVW------------PAGPDNPMGLYAL 182 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + H T F +R + GCVR+R+ Sbjct: 183 YIGNLYAI--HGTNAS--FGIGLR-VSQGCVRLRH 212 >gi|78221508|ref|YP_383255.1| hypothetical protein Gmet_0285 [Geobacter metallireducens GS-15] gi|78192763|gb|ABB30530.1| hypothetical protein Gmet_0285 [Geobacter metallireducens GS-15] Length = 292 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V +L++ L G + F E+A++ FQ + GL +G+V Sbjct: 229 LQKGDRGPKVVQLQKALKSRGY---NLKSDGVFGKKTETALQDFQRKQGLPDNGIVGPKA 285 Query: 162 LEAM 165 + Sbjct: 286 AAYL 289 >gi|269795813|ref|YP_003315268.1| membrane-fusion protein [Sanguibacter keddieii DSM 10542] gi|269097998|gb|ACZ22434.1| membrane-fusion protein [Sanguibacter keddieii DSM 10542] Length = 379 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%) Query: 94 WPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 + ELP R L +G+ V +L+E L G + AV +Q GL Sbjct: 127 FGELPAYRELGVGDRGADVSQLKENLTALGY--TGFSADDRYTQATSRAVSRWQKDVGLP 184 Query: 153 PSGMVDSS 160 +G + Sbjct: 185 QTGRLGPE 192 >gi|297617690|ref|YP_003702849.1| peptidoglycan-binding protein [Syntrophothermus lipocalidus DSM 12680] gi|297145527|gb|ADI02284.1| Peptidoglycan-binding domain 1 protein [Syntrophothermus lipocalidus DSM 12680] Length = 246 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 3/70 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISG---DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 R L G+ V L+ RL + F E+AVKLFQ G+ G Sbjct: 100 SRTLRRGSRHTDVWILQNRLNAKAKKYAVALGGPADGNFGPKTETAVKLFQGDSGISVDG 159 Query: 156 MVDSSTLEAM 165 +V T + + Sbjct: 160 VVGPVTFDQL 169 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G + + V L+++L+ F E+AV FQ G+ G+ Sbjct: 178 RNLQKGRNGIDVFALQKKLVALSY--NPGPCDGKFGPKTEAAVIKFQKDAGIAADGIAGP 235 Query: 160 STLEAMNV 167 T ++ + Sbjct: 236 QTYYSLGI 243 >gi|126729498|ref|ZP_01745311.1| spore cortex-lytic enzyme precursor [Sagittula stellata E-37] gi|126709617|gb|EBA08670.1| spore cortex-lytic enzyme precursor [Sagittula stellata E-37] Length = 335 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 2/76 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V+ L+E L + FD +A+ FQ +GL + T Sbjct: 175 LRFGDQGADVRVLQEDLAGLRYFAGRRDG--RFDTLTRAALLAFQADNGLATDAVAGQQT 232 Query: 162 LEAMNVPVDLRIRQLQ 177 A+ +R + Sbjct: 233 WAALARAQPRPLRDIA 248 >gi|194289051|ref|YP_002004958.1| lytic protein [Cupriavidus taiwanensis LMG 19424] gi|193222886|emb|CAQ68891.1| putative lytic enzyme, similar to phage phiCTX_orf11 [Cupriavidus taiwanensis LMG 19424] Length = 268 Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 3/90 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG+ V+ L+ L G ++ FDA +AV+ Q R+GL G+ T Sbjct: 4 LRLGDVGADVRELQRLLRERG---AQLEMTGDFDAATLAAVRAAQARYGLVVDGIAGPKT 60 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKM 191 L A+ +L R +LE + Sbjct: 61 LLALQRDTRQPAHLSAADLQRAADVLEVPL 90 >gi|309389082|gb|ADO76962.1| Peptidase M23 [Halanaerobium praevalens DSM 2228] Length = 434 Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 3/70 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + L + V ++ L I G + F E A K FQ + L G Sbjct: 23 SVSAFQVKLNDRGKEVIEAQKHLEILGY---EVAIDGIFGKSTEDAAKKFQAENNLQVDG 79 Query: 156 MVDSSTLEAM 165 ++ TL + Sbjct: 80 IIGGKTLSLL 89 >gi|320334702|ref|YP_004171413.1| peptidoglycan-binding domain 1 protein [Deinococcus maricopensis DSM 21211] gi|319755991|gb|ADV67748.1| Peptidoglycan-binding domain 1 protein [Deinococcus maricopensis DSM 21211] Length = 258 Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 + ++ L+ RL+ +D KG + E+ + FQ +GL +G+VD++T Sbjct: 173 PRMNGEDIRALQNRLMDVSRIDRGKGGDGWYGPMTEANIIAFQSANGLPANGVVDAATWR 232 Query: 164 AM 165 A+ Sbjct: 233 AL 234 >gi|282861682|ref|ZP_06270746.1| Peptidoglycan-binding domain 1 protein [Streptomyces sp. ACTE] gi|282563498|gb|EFB69036.1| Peptidoglycan-binding domain 1 protein [Streptomyces sp. ACTE] Length = 334 Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 4/67 (5%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVD 158 L G+ V L+ RL + VE AV+ FQ + G+ Sbjct: 259 TLRRGDQGPEVAELQRRLREKWIYQGPD--DAHYSDRVERAVREFQRWVSVGTDAPGVYG 316 Query: 159 SSTLEAM 165 T +A+ Sbjct: 317 PETRKAL 323 >gi|332710724|ref|ZP_08430665.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332350501|gb|EGJ30100.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 368 Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 V+ +++ L +G G + E VK FQ ++GLD G+V +T Sbjct: 307 QPYMKGEDVRAIQQALAKAGYSLEPDG---VYGPGSEGVVKQFQEQNGLDVDGVVGPATR 363 Query: 163 EAM 165 M Sbjct: 364 AKM 366 >gi|1170043|sp|P45754|GSPA_AERHY RecName: Full=General secretion pathway protein A gi|551216|emb|CAA57225.1| ExeA [Aeromonas hydrophila] Length = 547 Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 L FDA +++ ++ FQ GL+P G+ S+TL +NV + +L+ R Sbjct: 466 LQQPDRKVRRFDAELKNKLQQFQREQGLNPDGIAGSNTLLRLNVMAGEPMPKLEDESQR 524 >gi|56963693|ref|YP_175424.1| peptidoglycan binding domain-containing protein [Bacillus clausii KSM-K16] gi|56909936|dbj|BAD64463.1| peptidoglycan-binding domain-containing protein [Bacillus clausii KSM-K16] Length = 362 Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + R L G+S V++L+ L +G D ++ F SA+K FQ L G Sbjct: 33 AMSDRTLSQGDSGEQVEQLQLLLTDNGVFDKED-INGTFGNSTASAIKEFQASEDLLVDG 91 Query: 156 MVDSSTLEAM 165 + TL A+ Sbjct: 92 IAGLQTLGAL 101 Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 53/151 (35%), Gaps = 12/151 (7%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVNDR-FDNFLARVDMGIDSDIPIISKETI 75 + M ++ ++ + E + + + ++ FD G + I + Sbjct: 25 FSAPTMANAMSDRTLSQGDSGEQVEQLQLLLTDNGVFDKEDINGTFGNSTASAIKEFQAS 84 Query: 76 AQTE-KAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 IA Q + + + L G+ V+ L+++L+ + F Sbjct: 85 EDLLVDGIAGLQTLGA--------LHALEHGDEGKLVEELQKQLLNLNYYKGE--VDGLF 134 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + E AV+ FQ +G+ G+ +T + Sbjct: 135 GSLTERAVENFQSDNGIAVDGIAGPATYSKL 165 >gi|67923403|ref|ZP_00516882.1| Peptidoglycan-binding domain 1:Staphylococcus nuclease (SNase-like) [Crocosphaera watsonii WH 8501] gi|67854738|gb|EAM50018.1| Peptidoglycan-binding domain 1:Staphylococcus nuclease (SNase-like) [Crocosphaera watsonii WH 8501] Length = 319 Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L LG++ +V ++++ L L PS F + +AV +Q L G+V Sbjct: 101 SLKLGDTGEAVGQVQKYLAKLNYL-PSNSPDGIFGSQTNAAVLKYQKDKNLTIDGVVGCG 159 Query: 161 TLEAM 165 T ++ Sbjct: 160 TFSSL 164 >gi|294814609|ref|ZP_06773252.1| Lipoprotein [Streptomyces clavuligerus ATCC 27064] gi|294327208|gb|EFG08851.1| Lipoprotein [Streptomyces clavuligerus ATCC 27064] Length = 344 Score = 50.2 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 63/183 (34%), Gaps = 19/183 (10%) Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQD----ILSRGGWPELPIRPLHLGNSSVSVQRL 114 D P + A+T++A I + G + R G V+ L Sbjct: 89 ADAQRTRTTPKEQQAQKARTQRAPERPARSTDTIPAAGQATVVMSR----GAQGPRVREL 144 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPVDLRI 173 + RL G + + + AV+ FQ + GL +G+ D++T + + Sbjct: 145 QARLAQIGWFGSAP--TGFYGRLTADAVRGFQGKRGLSVTGLTDTTTWRKLRGMTTAPTA 202 Query: 174 RQLQ-------VNLMRIK-KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 +L + + +L + + R + ++ SL V +G V V G Sbjct: 203 EELSGTRKDPVKAAHKPRPRLDPRCLNGRVLCISKTTRSLSWVVDGTVRSTMDVRFGAEY 262 Query: 226 RQT 228 T Sbjct: 263 TPT 265 >gi|284929484|ref|YP_003422006.1| hypothetical protein UCYN_09450 [cyanobacterium UCYN-A] gi|284809928|gb|ADB95625.1| uncharacterized conserved protein [cyanobacterium UCYN-A] Length = 181 Score = 49.8 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 46/156 (29%), Gaps = 52/156 (33%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++ +N+ + +N +V V +G+ +TP + + ++ NP W Sbjct: 57 HISINLKERRVYVYQNSEVIKSYKVAIGKKGWETPKGNFAVMEMVENPQW---------- 106 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++P + G + + I Sbjct: 107 ------KNP-------------WNGRIS------------------AAGPNSPLGERWIA 129 Query: 315 FYSRNNTY--MHDTPEPILFNNVVRFETSGCVRVRN 348 F ++ Y H T + GCVR+RN Sbjct: 130 FSQQDGKYVGFHGTAGEHSMGK---AVSHGCVRMRN 162 >gi|307265061|ref|ZP_07546621.1| carboxyl-terminal protease [Thermoanaerobacter wiegelii Rt8.B1] gi|306919859|gb|EFN50073.1| carboxyl-terminal protease [Thermoanaerobacter wiegelii Rt8.B1] Length = 457 Score = 49.8 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 19/101 (18%) Query: 82 IAFY-----QDILSRGGWPELPI------------RPLHLGNSSVSVQRLRERLIISGDL 124 IA Y + I +G P++ + L +G+ V+ L++ L I Sbjct: 335 IARYKLPSGRYIDKQGLKPDIYVVNTQYTPSFKFNGTLKVGSRGNDVKILQKNLNILKF- 393 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F +AVK Q + GL P+G+ D +T +A+ Sbjct: 394 -NAGPEDGIFGPKTANAVKELQKKAGLTPTGVFDKNTYDAL 433 >gi|218704524|ref|YP_002412043.1| hypothetical protein ECUMN_1291 [Escherichia coli UMN026] gi|293404402|ref|ZP_06648396.1| L,D-transpeptidase YcfS [Escherichia coli FVEC1412] gi|298380179|ref|ZP_06989784.1| ycfS protein [Escherichia coli FVEC1302] gi|218431621|emb|CAR12500.1| conserved hypothetical protein [Escherichia coli UMN026] gi|291428988|gb|EFF02013.1| L,D-transpeptidase YcfS [Escherichia coli FVEC1412] gi|298279877|gb|EFI21385.1| ycfS protein [Escherichia coli FVEC1302] Length = 320 Score = 49.8 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 92 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 151 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 175 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 176 VPAGPDNPMGHHAIRMAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|300896876|ref|ZP_07115366.1| LysM domain protein [Escherichia coli MS 198-1] gi|300359283|gb|EFJ75153.1| LysM domain protein [Escherichia coli MS 198-1] Length = 319 Score = 49.8 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRMAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|21283039|ref|NP_646127.1| carboxy-terminal processing proteinase ctpA [Staphylococcus aureus subsp. aureus MW2] gi|49486261|ref|YP_043482.1| putative protease [Staphylococcus aureus subsp. aureus MSSA476] gi|297207922|ref|ZP_06924355.1| carboxy-terminal processing protease CtpA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912006|ref|ZP_07129449.1| carboxy-terminal processing protease CtpA [Staphylococcus aureus subsp. aureus TCH70] gi|81696321|sp|Q6G9E1|CTPAL_STAAS RecName: Full=Probable CtpA-like serine protease gi|81762507|sp|Q8NWR2|CTPAL_STAAW RecName: Full=Probable CtpA-like serine protease gi|21204478|dbj|BAB95175.1| probable carboxy-terminal processing proteinase ctpA [Staphylococcus aureus subsp. aureus MW2] gi|49244704|emb|CAG43139.1| putative protease [Staphylococcus aureus subsp. aureus MSSA476] gi|296887496|gb|EFH26396.1| carboxy-terminal processing protease CtpA [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886252|gb|EFK81454.1| carboxy-terminal processing protease CtpA [Staphylococcus aureus subsp. aureus TCH70] gi|329733430|gb|EGG69762.1| peptidase, S41 family [Staphylococcus aureus subsp. aureus 21193] Length = 496 Score = 49.8 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G + FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNETTQFDQALENQVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|296332614|ref|ZP_06875075.1| N-acetylmuramoyl-L-alanine amidase; skin element [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|296150532|gb|EFG91420.1| N-acetylmuramoyl-L-alanine amidase; skin element [Bacillus subtilis subsp. spizizenii ATCC 6633] Length = 159 Score = 49.8 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 7/64 (10%) Query: 109 VSVQRLRERLIISGDLDPSK----GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST--- 161 +V++++ L K G+ + AV+ FQ+ +GL G+ T Sbjct: 94 DAVEQIQTALAALHFYPDKKAKNFGIDSYYGPQTADAVRRFQLMYGLSADGIYGPKTKAK 153 Query: 162 LEAM 165 +EA+ Sbjct: 154 IEAL 157 >gi|325171175|ref|YP_004251150.1| putative Gp5 baseplate hub subunit and tail lysozyme [Vibrio phage ICP1] gi|323512570|gb|ADX88025.1| putative Gp5 baseplate hub subunit and tail lysozyme [Vibrio phage ICP1] gi|323512797|gb|ADX88251.1| Gp5 baseplate hub subunit and tail lysozyme [Vibrio phage ICP1_2006_D] gi|323513025|gb|ADX88478.1| Gp5 baseplate hub subunit and tail lysozyme [Vibrio phage ICP1_2006_C] gi|323513250|gb|ADX88702.1| Gp5 baseplate hub subunit and tail lysozyme [Vibrio phage ICP1_2006_B] gi|323513477|gb|ADX88928.1| Gp5 baseplate hub subunit and tail lysozyme [Vibrio phage ICP1_2006_A] gi|323513708|gb|ADX89158.1| Gp5 baseplate hub subunit and tail lysozyme [Vibrio phage ICP1_2005_A] gi|323513939|gb|ADX89388.1| Gp5 baseplate hub subunit and tail lysozyme (Shigella phage phiSboM-AG3) [Vibrio phage ICP1_2001_A] gi|323514167|gb|ADX89615.1| Gp5 baseplate hub subunit and tail lysozyme [Vibrio phage ICP1_2004_A] Length = 238 Score = 49.8 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDSS 160 L G+S V+ ++E L G +KG+ F+ ESAVK FQ G++ + Sbjct: 3 LKRGSSGADVKNMQEYLTALGY--DTKGVEGTFEGGTESAVKAFQKDMSFTVVDGIIGNQ 60 Query: 161 TLEAM 165 T + + Sbjct: 61 TAKHL 65 >gi|117921513|ref|YP_870705.1| peptidoglycan binding domain-containing protein [Shewanella sp. ANA-3] gi|117613845|gb|ABK49299.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. ANA-3] Length = 562 Score = 49.8 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P LP+ + +S +Q L L + PS+ +S FD +E+ +K FQ +HGL Sbjct: 476 PNLPMLEISQKSSPGQLQWLENALAHVAN-RPSRRVSQ-FDLKLENDLKAFQSQHGLKAD 533 Query: 155 GMVDSSTLEAMN 166 G+ + TL +N Sbjct: 534 GIAGNQTLVRLN 545 >gi|323706253|ref|ZP_08117820.1| spore cortex-lytic enzyme [Thermoanaerobacterium xylanolyticum LX-11] gi|323534417|gb|EGB24201.1| spore cortex-lytic enzyme [Thermoanaerobacterium xylanolyticum LX-11] Length = 238 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GNS V R++ RL G D + F AV+ FQ +GL+ +G+VD T A Sbjct: 42 GNSGSDVSRVQSRLKDWGYYDG--PVDGFFGVRTWLAVRKFQANNGLNVTGIVDDQTKVA 99 Query: 165 M--NVP 168 + N+ Sbjct: 100 LGFNIS 105 >gi|84497560|ref|ZP_00996382.1| endopeptidase [Janibacter sp. HTCC2649] gi|84382448|gb|EAP98330.1| endopeptidase [Janibacter sp. HTCC2649] Length = 193 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 20/111 (18%) Query: 105 GNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ V L++RL G L G + + AV Q GL G V S+T + Sbjct: 2 GDRGPKVLALQQRLSNLGYWLGEPDG---HYGSLTRQAVWALQKSAGLSRDGNVGSATQK 58 Query: 164 AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 A+ N +R ++ + +N+ L V G+V Sbjct: 59 AL------------ANGVR----PSTQLSGDGIDINLSRQILMIVRGGEVT 93 >gi|166031490|ref|ZP_02234319.1| hypothetical protein DORFOR_01187 [Dorea formicigenerans ATCC 27755] gi|166028895|gb|EDR47652.1| hypothetical protein DORFOR_01187 [Dorea formicigenerans ATCC 27755] Length = 287 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 8/63 (12%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + ++E+L + + F ++AV FQ HGL G+V +T Sbjct: 230 RKGARGNITRLIQEKLGV--------AVDGIFGQKTKNAVIAFQRAHGLIADGIVGKNTW 281 Query: 163 EAM 165 A+ Sbjct: 282 RAL 284 >gi|307353609|ref|YP_003894660.1| peptidoglycan-binding domain 1 protein [Methanoplanus petrolearius DSM 11571] gi|307156842|gb|ADN36222.1| Peptidoglycan-binding domain 1 protein [Methanoplanus petrolearius DSM 11571] Length = 807 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 67/199 (33%), Gaps = 50/199 (25%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ V L+ +L G DP + F AV FQ GL G++ Sbjct: 2 SLKIGSKGEPVCELQSKLKELGY-DPGEVDGN-FGQVTRKAVSKFQENKGLSIDGVIGPE 59 Query: 161 TLEAMNV------PVDLRIR---QLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 ++ A+ + P R++ L N G NI A+ +AV++ Sbjct: 60 SVNALGIKTVLEKPEPERLKFRELLLTN--------PNYFG------NIKASKFKAVKSK 105 Query: 212 KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNI 271 K + + +NPY + Q + + +++D Y Sbjct: 106 KQDTSF---------------EELKCLGYNPY------LSQLEAVIHIKKDYGY----GG 140 Query: 272 HMIDEKGKEVFVEEVDWNS 290 + E +DWN+ Sbjct: 141 DICSCGTPEYVRFYIDWNN 159 >gi|319651171|ref|ZP_08005303.1| hypothetical protein HMPREF1013_01915 [Bacillus sp. 2_A_57_CT2] gi|317397153|gb|EFV77859.1| hypothetical protein HMPREF1013_01915 [Bacillus sp. 2_A_57_CT2] Length = 498 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L L SS V+ ++ L G DP + FD E AVK FQ L+ +G++ Sbjct: 405 PDTELKLSVSSAQVKAGQQMLKALGY-DPGREDG-FFDEKTEQAVKEFQAAEKLEQNGVL 462 Query: 158 -DSSTLEAM 165 STL M Sbjct: 463 SGQSTLRLM 471 >gi|290509071|ref|ZP_06548442.1| ynhG [Klebsiella sp. 1_1_55] gi|289778465|gb|EFD86462.1| ynhG [Klebsiella sp. 1_1_55] Length = 328 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 40/164 (24%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + ++VN+ L G+ + +G++ +TP + +RI + + NP W Sbjct: 89 MLLPDVPREGIVVNLAELRLYYFPPGENQVQVYPLGIGQLGLETPEMTTRIGQKIPNPTW 148 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I + + + G Sbjct: 149 TPTAGIRARSL-----------------------------------EKGVTLPAVVPAGP 173 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR 347 N + + N Y +H T P ++V +SGC+R+ Sbjct: 174 YNPLGRYALRLAYGNGEYLIHGTNAP---DSVGLRVSSGCMRMN 214 >gi|206580759|ref|YP_002238022.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Klebsiella pneumoniae 342] gi|288935010|ref|YP_003439069.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella variicola At-22] gi|206569817|gb|ACI11593.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Klebsiella pneumoniae 342] gi|288889719|gb|ADC58037.1| ErfK/YbiS/YcfS/YnhG family protein [Klebsiella variicola At-22] Length = 328 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 40/164 (24%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + ++VN+ L G+ + +G++ +TP + +RI + + NP W Sbjct: 89 MLLPDVPREGIVVNLAELRLYYFPPGENQVQVYPLGIGQLGLETPEMTTRIGQKIPNPTW 148 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I + + + G Sbjct: 149 TPTAGIRARSL-----------------------------------EKGVTLPAVVPAGP 173 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR 347 N + + N Y +H T P ++V +SGC+R+ Sbjct: 174 YNPLGRYALRLAYGNGEYLIHGTNAP---DSVGLRVSSGCMRMN 214 >gi|121605872|ref|YP_983201.1| peptidoglycan-binding domain-containing protein [Polaromonas naphthalenivorans CJ2] gi|120594841|gb|ABM38280.1| Peptidoglycan-binding domain 1 protein [Polaromonas naphthalenivorans CJ2] Length = 589 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 2/76 (2%) Query: 106 NSSVSVQRLRERLIISGDLDP--SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 ++ +QRL +L + + DA + + V+ FQ GL+ G T Sbjct: 512 STGPVIQRLASQLALLDGAPAPLASTAPPVLDAALRARVRAFQRAQGLEADGQPGPMTFM 571 Query: 164 AMNVPVDLRIRQLQVN 179 ++ +LQ N Sbjct: 572 QIDRATHADEPRLQTN 587 >gi|303241300|ref|ZP_07327805.1| Peptidoglycan-binding domain 1 protein [Acetivibrio cellulolyticus CD2] gi|302591139|gb|EFL60882.1| Peptidoglycan-binding domain 1 protein [Acetivibrio cellulolyticus CD2] Length = 1528 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 16/126 (12%) Query: 110 SVQRLRERLIISGDLDPSKGLSV-------AFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 V L++ L+ G L+ + + E+AVK FQ ++GLD G V T Sbjct: 1007 DVIVLQKILVSLGLLEMPIDPNTKTYVPFGTYAGLTENAVKKFQKKNGLDQDGKVGKITW 1066 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 + +P D Q N +L+ IP +L G + + VG Sbjct: 1067 NKLMLPWDENSAQPDRNSWSYIYILQND----RFYTAIPQVTLSTPTKG-----TKIKVG 1117 Query: 223 RVDRQT 228 R T Sbjct: 1118 EPLRIT 1123 >gi|121535699|ref|ZP_01667503.1| ErfK/YbiS/YcfS/YnhG family protein [Thermosinus carboxydivorans Nor1] gi|121305730|gb|EAX46668.1| ErfK/YbiS/YcfS/YnhG family protein [Thermosinus carboxydivorans Nor1] Length = 238 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%) Query: 95 PELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P++ + R L + V L+ +L G L F A E AV+ FQ GL+ Sbjct: 167 PKVKVQRTLKKQMTGADVVMLQVKLKELGYLKARADG--IFGAVTEEAVRAFQADKGLEV 224 Query: 154 SGMVDSSTLEAMNV 167 +G+V+ L+ + + Sbjct: 225 NGVVNRQMLDLLGI 238 Score = 40.6 bits (94), Expect = 0.53, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 52/170 (30%), Gaps = 68/170 (40%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 G +++ +P LE +G++ + V VG+ TP+ W Sbjct: 52 PTGTVSIIIKVPERILEVYNDGQLYKKYRVAVGKSKTPTPVGE-----------W----- 95 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 +V ++ +W S + M Sbjct: 96 ------------------------------KVVWKDYNWGSGFGTRW-----------MG 114 Query: 310 STKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 Y +H T P ++ RF + GC+R+RN + +L W+ Sbjct: 115 L---NVP--WGVYGIHGTNNPW---SIGRFASHGCIRMRNKDVEELFEWV 156 >gi|302532771|ref|ZP_07285113.1| predicted protein [Streptomyces sp. C] gi|302441666|gb|EFL13482.1| predicted protein [Streptomyces sp. C] Length = 231 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+S V L+ L + LD + + A E+AV+ Q +GL+ G+ +T Sbjct: 155 GSSGEHVSELQRALAVCHGLDTG-TIDGVYGAKTEAAVRTLQSWNGLNADGIYGPNTRN 212 >gi|271970428|ref|YP_003344624.1| hypothetical protein Sros_9263 [Streptosporangium roseum DSM 43021] gi|270513603|gb|ACZ91881.1| hypothetical protein Sros_9263 [Streptosporangium roseum DSM 43021] Length = 381 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 41/124 (33%), Gaps = 15/124 (12%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ + V+RL+ RL ++ + A + AV FQ GL V Sbjct: 42 RTLRPGDYAKIVERLQRRLQELNFSPG--LVNGYYGAETQVAVWAFQKSQGLMAKDEVGP 99 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTV 219 T A+ P L R V +++ L + + L S V Sbjct: 100 ETWRALAHPH-------------WAPPLVSAGRPRRVEIDLRRQLLTVYRHNRPMLISHV 146 Query: 220 IVGR 223 G Sbjct: 147 STGS 150 >gi|260588566|ref|ZP_05854479.1| spore cortex-lytic enzyme SleC [Blautia hansenii DSM 20583] gi|260541041|gb|EEX21610.1| spore cortex-lytic enzyme SleC [Blautia hansenii DSM 20583] Length = 421 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPS 154 P +PL +G+S +++++E+L + P+ + F ++AVK FQ GL + Sbjct: 337 PGQPLDIGSSGSKIRQIQEQLNAIANAYPALPKISVDGVFGENTQNAVKKFQQIFGLPAT 396 Query: 155 GMVDSSTLEAM 165 G++D ST + Sbjct: 397 GIIDYSTWYEI 407 >gi|91788684|ref|YP_549636.1| peptidoglycan-binding domain-containing protein [Polaromonas sp. JS666] gi|91697909|gb|ABE44738.1| Peptidoglycan-binding domain 1 [Polaromonas sp. JS666] Length = 556 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 11/93 (11%) Query: 91 RGGWPELPIRPLHLG------NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 +G + L P G S V+ + RL ++ DA + + ++ Sbjct: 463 QGDFSTLWRSPAGYGGRPLDSQSGPVVEWVAARLTAVD--GTAQAGRPVLDASLRARLRT 520 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVPV---DLRIR 174 FQ+ GL G + T +N + R+R Sbjct: 521 FQLAQGLPTDGRLGPLTFMQLNRTAGVDEPRLR 553 >gi|113971231|ref|YP_735024.1| peptidoglycan binding domain-containing protein [Shewanella sp. MR-4] gi|113885915|gb|ABI39967.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. MR-4] Length = 562 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 PS+ +S FD +E+ +K FQ +HGL G+ + TL +N Sbjct: 506 PSRRVSQ-FDLKLENDLKAFQSQHGLKADGIAGNQTLVRLN 545 >gi|114048469|ref|YP_739019.1| peptidoglycan binding domain-containing protein [Shewanella sp. MR-7] gi|113889911|gb|ABI43962.1| Peptidoglycan-binding domain 1 protein [Shewanella sp. MR-7] Length = 562 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 PS+ +S FD +E+ +K FQ +HGL G+ + TL +N Sbjct: 506 PSRRVSQ-FDLKLENDLKAFQSQHGLKADGIAGNQTLVRLN 545 >gi|332710365|ref|ZP_08430313.1| peptidoglycan binding domain protein [Lyngbya majuscula 3L] gi|332350914|gb|EGJ30506.1| peptidoglycan binding domain protein [Lyngbya majuscula 3L] Length = 152 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 2/79 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + L GN+ +V+ L++ LI G + FD Y V FQ + L G Sbjct: 75 TVTMPVLTPGNNGDAVRFLQQILISLGY--TIVKFNANFDRYTYLGVTQFQRNNRLKVDG 132 Query: 156 MVDSSTLEAMNVPVDLRIR 174 +V T + R R Sbjct: 133 VVGWHTWRKLGEASVSRRR 151 >gi|160933190|ref|ZP_02080579.1| hypothetical protein CLOLEP_02035 [Clostridium leptum DSM 753] gi|156868264|gb|EDO61636.1| hypothetical protein CLOLEP_02035 [Clostridium leptum DSM 753] Length = 439 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + LG++ +V +L++RL+ G + FD E V FQ + G+ D + Sbjct: 363 TMKLGDTGDNVTKLQQRLLELG--HTYSEPTGTFDELTEQGVMNFQFLSDMVADGIADDA 420 Query: 161 TLEAM 165 L+A+ Sbjct: 421 LLDAL 425 >gi|260597485|ref|YP_003210056.1| hypothetical protein CTU_16930 [Cronobacter turicensis z3032] gi|260216662|emb|CBA29996.1| Uncharacterized protein ycfS [Cronobacter turicensis z3032] Length = 324 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 42/169 (24%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVD--RQTPILHSRINRIMF 240 +++L +L+NI L G K + +G++D TP + + +++ Sbjct: 94 RQMLLPDAPREGILINIAELRLYYFPPGEKSVTVYPIGIGQLDGDTLTPTMQTTVSQKRA 153 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP W P + I+ K + + + V Sbjct: 154 NPTWT-PTANIR---------------------ARYKAQGIDLPPVV------------- 178 Query: 301 DPGKINAMASTKIEFYSRNNTYM-HDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y+ H T F +R +SGC+R+R+ Sbjct: 179 PAGPENPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 224 >gi|311068413|ref|YP_003973336.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage-related protein [Bacillus atrophaeus 1942] gi|310868930|gb|ADP32405.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage-related protein [Bacillus atrophaeus 1942] Length = 274 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 4/66 (6%) Query: 104 LGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +V ++++ L + G+ + A +AVK FQ +GL G+ Sbjct: 204 PLMKGAAVTKIQKALAALYFYPDKGAENNGIDGYYGAKTANAVKRFQSMYGLTADGIYGP 263 Query: 160 STLEAM 165 + + Sbjct: 264 KSKAKL 269 >gi|149911042|ref|ZP_01899670.1| general secretion pathway protein a [Moritella sp. PE36] gi|149805868|gb|EDM65856.1| general secretion pathway protein a [Moritella sp. PE36] Length = 546 Score = 49.8 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 4/64 (6%) Query: 100 RPLHLGNSSVSVQRL-RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L + ++ L R + G+ FD + V FQ + GL G+V Sbjct: 462 NSLKQNDKGELIRWLDRNISAVLGE---KAASGAKFDWPLMKKVMRFQQQSGLSADGIVG 518 Query: 159 SSTL 162 T+ Sbjct: 519 PQTM 522 >gi|291300295|ref|YP_003511573.1| peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] gi|290569515|gb|ADD42480.1| Peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] Length = 364 Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 56/152 (36%), Gaps = 12/152 (7%) Query: 14 FFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKE 73 F Y L G S E +LD+ + N +D A+ +DI + Sbjct: 221 FKKYPALKDGDSGDEVTAAQCLLDKSGRPTTDGDPNGEYDKATAKSVKQFQADIGLKETG 280 Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 I +L RG L G +V RL+ L + L+ + + Sbjct: 281 EIDSHTWT-----ALLGRG-----SNVQLQEGEEGRNVSRLQRALTAA--LETTVPIDGK 328 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F A +A K +Q + GLD G+V +T A+ Sbjct: 329 FTAETTAAAKKYQEKAGLDADGIVGVNTWRAL 360 >gi|317127871|ref|YP_004094153.1| peptidase S8 and S53 subtilisin kexin sedolisin [Bacillus cellulosilyticus DSM 2522] gi|315472819|gb|ADU29422.1| peptidase S8 and S53 subtilisin kexin sedolisin [Bacillus cellulosilyticus DSM 2522] Length = 1027 Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 66/185 (35%), Gaps = 25/185 (13%) Query: 17 YLILPMGLSLVEKPIHASVLDEIINESYHSIVND----RFDNFLARVDMGIDSDI----- 67 Y ++ G+ + + EI++ + + + L+ +D + ++ Sbjct: 657 YGLVATGMITTDTKVKIQ---EILSSPLRNGQHHDSAIQLKINLSFLDFHVSNNPTTYYG 713 Query: 68 PIISKETIAQTEKAIAFYQDILSRGGWPELPI---RPLHLGNSSVSVQRLRERLIISGDL 124 P ++ EK I ++ P+ LG V L+ L I G Sbjct: 714 PTTERKVREFQEKYGLRVNGIADEITLKKIESLINSPMALGTYRKDVITLKNNLAILGF- 772 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM---------NVPVDLRIRQ 175 S + + E V+ FQ +GL+ +G+ TLE + N D Q Sbjct: 773 HISNNPTTYYGPTTERVVREFQDYYGLEVTGIASQETLEKIEEILSSPLRNGQHDEGAIQ 832 Query: 176 LQVNL 180 L++NL Sbjct: 833 LKINL 837 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 E+ PL G +L+ L + G S + + E V+ FQ +GL +G Sbjct: 815 EILSSPLRNGQHDEGAIQLKINLSLLGF-HISNNPTTHYGPTTERKVREFQQVNGLKVNG 873 Query: 156 MVDSSTLE 163 + D TL+ Sbjct: 874 IADKVTLK 881 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 PL G S +L+ L + G S + + E V+ FQ HGL +G+ D Sbjct: 958 SSPLRNGQHHESAIQLKINLSLLGF-HVSNNPTTYYGPMTERRVREFQSAHGLIVNGIAD 1016 Query: 159 SSTLE 163 TL Sbjct: 1017 EITLA 1021 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 10/89 (11%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + LG S V L+ L G S + + E V+ FQ +GL +G+ Sbjct: 890 TMALGTHSQEVVTLKNNLATLGF-HISNNPTTYYGPITEQVVREFQRYYGLKMTGVASQE 948 Query: 161 TLEAM---------NVPVDLRIRQLQVNL 180 TL + N QL++NL Sbjct: 949 TLNKIESVLSSPLRNGQHHESAIQLKINL 977 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L+ G L+ S ++ F+ E A++ FQ +GL +GM+ + T Sbjct: 627 LMRLGFLNNSD-VNGEFNIETEVAIRDFQEYYGLVATGMITTDT 669 >gi|333026677|ref|ZP_08454741.1| hypothetical protein STTU_4183 [Streptomyces sp. Tu6071] gi|332746529|gb|EGJ76970.1| hypothetical protein STTU_4183 [Streptomyces sp. Tu6071] Length = 196 Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 14/123 (11%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM--NVPVD 170 L+ RL G + F A+ FQ GL SG++D++T + P Sbjct: 3 ALQARLWSLGFFRQQP--TGYFGDVTAQALAAFQRDRGLAASGVLDAATWARLRAAGPAP 60 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVL-----VNIPAASLEAVENGKVGLRSTVIVGRVD 225 + L L + R + V+ + +L + +G+V V G Sbjct: 61 TKA-----ALYPETTLPPTRPDPRCLTGRALCVSKKSRTLAWMVDGRVVSVMDVRFGSAY 115 Query: 226 RQT 228 T Sbjct: 116 TPT 118 >gi|162456517|ref|YP_001618884.1| hypothetical protein sce8234 [Sorangium cellulosum 'So ce 56'] gi|161167099|emb|CAN98404.1| hypothetical protein predicted by Glimmer/Critica [Sorangium cellulosum 'So ce 56'] Length = 834 Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Query: 98 PIRPLHLGNSSVSVQRLRERLIIS-GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 P L G V+ ++ L+ L P G F A E+A ++FQ GL +G Sbjct: 392 PGGGLARGAKGPEVKAWQQHLLTWRAGLLPRFGADGEFGAETEAATRIFQQEMGLPVTGA 451 Query: 157 VDSSTLEAM 165 V T EAM Sbjct: 452 VGPETREAM 460 >gi|319784207|ref|YP_004143683.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170095|gb|ADV13633.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 334 Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 81/288 (28%), Gaps = 110/288 (38%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR-----------------IRQLQVNLMRI 183 AV FQ +GL G + T + + V R R++ + R+ Sbjct: 74 AVSAFQAANGLPADGKLTRETWDKL-VATSSRPAIETYDLTRKDVHGPFTRRIPARMERM 132 Query: 184 KKLLE-------QKMGLRY---------------------------------------VL 197 +L +KM R+ V Sbjct: 133 ARLPRLAYHNALEKMAERFHISEQLLERLNPGIGFRKAGQKLLVPAVTRGDPPQDIASVE 192 Query: 198 VNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMM 256 V+ A + ++ +GKV +G ++ P + + R++ +P + Sbjct: 193 VDKSARQVRVLDPSGKVLATYPASIGSQEKPAPSGQAEVKRVVHHPTYH----------- 241 Query: 257 ALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY 316 DP++ F G N + S I+ Sbjct: 242 ----YDPEFAFK--------------------GVRSKRPFTI--AAGPNNPVGSVWIDLS 275 Query: 317 -SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 H TP+P + + + GC+R+ N DL + K T Sbjct: 276 IDSYGI--HGTPDPG---KIGKTFSHGCIRLTNWDAEDLASEVQKGTK 318 >gi|156934400|ref|YP_001438316.1| hypothetical protein ESA_02231 [Cronobacter sakazakii ATCC BAA-894] gi|156532654|gb|ABU77480.1| hypothetical protein ESA_02231 [Cronobacter sakazakii ATCC BAA-894] Length = 324 Score = 49.8 bits (118), Expect = 9e-04, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 42/169 (24%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVD--RQTPILHSRINRIMF 240 +++L +L+N+ L G+ + +G++D TP + + +++ Sbjct: 94 RQMLLPDAPREGILINLAELRLYYFAPGENTVTVYPIGIGQLDGDTLTPTMQTTVSQKRA 153 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP W +I + K I + Sbjct: 154 NPTWTPTANIRAR------------YKAQGIDL-----------------------PAVM 178 Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 179 PAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 224 >gi|53804993|ref|YP_113349.1| ErfK/YbiS/YcfS/YnhG family protein [Methylococcus capsulatus str. Bath] gi|53758754|gb|AAU93045.1| ErfK/YbiS/YcfS/YnhG family protein [Methylococcus capsulatus str. Bath] Length = 361 Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 71/213 (33%), Gaps = 49/213 (23%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVEN-GKVGLRSTVI-----VGRVDRQTPILHSRINR 237 ++ + ++VNIP L + GK + V+ +GR+D ++P+ +++ Sbjct: 86 RQFILPDAPRNGIVVNIPEMRLYFYPSAGKGAKPTKVVTYPISIGRMDWRSPLGLTKVVA 145 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 + +P W P SI + K E+ + V Sbjct: 146 KVKDPVWRPPASIKAE---------------------HAKNGEILPDVV----------- 173 Query: 298 FRQDPGKINAMASTKIEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 G N + + H T + + +R T GC+R+ D+ Sbjct: 174 ---PAGPNNPLGQFAMRLGVPGYLI--HGTDQDKSYGIGMR-VTHGCIRM-YPEDVAKLF 226 Query: 357 LKDTPTWSRYHIEEVVK---TRKTTPVKLATEV 386 + + + VK +T ++++ + Sbjct: 227 PEVAVGTPVNLVNQPVKLGWQGETLYIEVSESL 259 >gi|77919622|ref|YP_357437.1| hypothetical protein Pcar_2026 [Pelobacter carbinolicus DSM 2380] gi|77545705|gb|ABA89267.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380] Length = 303 Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 57/184 (30%), Gaps = 49/184 (26%) Query: 196 VLVNIPAASLEAVENGKVGLRSTV---IVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 + +N+ L V + LR V +G TP I + +P W P SI + Sbjct: 105 ITINLAEFRLYYVWQEQNRLRVRVYPVGIGSSGWDTPQGEFEITEKIVHPVWYAPASI-R 163 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 K+ +P+ R G N + Sbjct: 164 KE-------NPRLAA-------------------------------RIPAGPDNPLGEYW 185 Query: 313 IEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEV 371 + +R H T +P V R + GC+R+ D+ + P + I + Sbjct: 186 LGLSARGYGI--HGTSKPY---GVGRRISHGCLRL-YPADIRDLFARVKPGTTVRIIRQP 239 Query: 372 VKTR 375 VKT Sbjct: 240 VKTG 243 >gi|21233610|ref|NP_639527.1| hypothetical protein XCC4193 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770575|ref|YP_245337.1| hypothetical protein XC_4282 [Xanthomonas campestris pv. campestris str. 8004] gi|188993806|ref|YP_001905816.1| hypothetical protein xccb100_4411 [Xanthomonas campestris pv. campestris str. B100] gi|21115476|gb|AAM43409.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575907|gb|AAY51317.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] gi|167735566|emb|CAP53784.1| hypothetical protein xcc-b100_4411 [Xanthomonas campestris pv. campestris] Length = 449 Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGL 151 P + + +G SS VQ++++ L G + +++AV +Q HGL Sbjct: 217 PFVDDGTIRIGGSSEMVQKVQQTLNAEGYRGADNQPLQEDGVYRLSMQAAVINYQQAHGL 276 Query: 152 DPSGMVDSSTLEAM 165 +G +D +TL+ + Sbjct: 277 SQTGDIDPATLQQI 290 >gi|255659023|ref|ZP_05404432.1| LysM domain protein [Mitsuokella multacida DSM 20544] gi|260848808|gb|EEX68815.1| LysM domain protein [Mitsuokella multacida DSM 20544] Length = 187 Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ +V++++ LI G L + +A+K FQ +GLD G+ + T Sbjct: 21 RQGSRGPAVRQVQSLLIEQGWLTGAADGICG--NQTVAAIKSFQKANGLDADGVCGNGTY 78 Query: 163 EAM 165 + Sbjct: 79 SVL 81 >gi|212640371|ref|YP_002316891.1| periplasmic protease [Anoxybacillus flavithermus WK1] gi|212561851|gb|ACJ34906.1| Periplasmic protease [Anoxybacillus flavithermus WK1] Length = 491 Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 42/114 (36%), Gaps = 23/114 (20%) Query: 82 IAFYQDILSRGGW-------PELPIR--------------PLHLGNSSVSVQRLRERLII 120 + Y+ + G W P + ++ PL ++ V+ ++ L Sbjct: 363 LTLYKWLTPNGNWIHEKGIQPNVQVKQPDFFYAHPLQIDKPLAYDMNNEQVKSAQQMLKG 422 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 G DP + F E AV+ FQ +GL +G +D T + V +R Sbjct: 423 LGF-DPGREDG-YFSKQTEQAVQAFQKANGLQATGKIDKQTANMLQTKVMEAVR 474 >gi|15895098|ref|NP_348447.1| fused Zn-dependent amidase/peptidase/peptodoglycan-binding domain-containing protein [Clostridium acetobutylicum ATCC 824] gi|15024797|gb|AAK79787.1|AE007691_5 Fusion of predicted Zn-dependent amidase/peptidase (cell wall hydrolase/DD-carboxypeptidase family) and uncharacterized domain of ErfK family; peptodoglycan-binding domain [Clostridium acetobutylicum ATCC 824] gi|325509236|gb|ADZ20872.1| peptodoglycan-binding domain protein [Clostridium acetobutylicum EA 2018] Length = 281 Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LG+S V+ ++++L G + G F + AV+ FQ +H + G V T Sbjct: 57 FKLGSSGSDVKSIQDKLNNYGYAITADGK---FGPSTDWAVRDFQYKHNIAMDGSVSDQT 113 Query: 162 LEAMNVPVDL 171 + +N Sbjct: 114 MNLLNQTPTD 123 >gi|297568912|ref|YP_003690256.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfurivibrio alkaliphilus AHT2] gi|296924827|gb|ADH85637.1| ErfK/YbiS/YcfS/YnhG family protein [Desulfurivibrio alkaliphilus AHT2] Length = 348 Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 46/165 (27%) Query: 185 KLLEQKMGLRYVLVNIPAASLEAV---ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 ++L Q +++N+P L + ++ + V +G DR TP+ I + + + Sbjct: 133 RVLPQIPSEPGMVLNLPEKRLYYFYRRNDNRLVISFPVGIGTADRGTPLGDFSITQKLTD 192 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W +P S+ + P+ Sbjct: 193 PSWTVPASV---------------------------------------REQRPHLPAIVP 213 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 PG N M + ++ S + ++H T P ++ R T GC R+ Sbjct: 214 PGPDNPMGAYALQL-SGGSYFIHGTNRPW---SIGRRATLGCARL 254 >gi|218288281|ref|ZP_03492580.1| hypothetical protein AaLAA1DRAFT_0165 [Alicyclobacillus acidocaldarius LAA1] gi|218241640|gb|EED08813.1| hypothetical protein AaLAA1DRAFT_0165 [Alicyclobacillus acidocaldarius LAA1] Length = 300 Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 18/102 (17%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 + + AV F+ HGL G + +L + L L Sbjct: 123 DPDRYTEITKGAVMRFEADHGLRVDGYTGPRVRRTL---------ELALAL-----HLTA 168 Query: 190 KMGLRYVLVN--IPAASLEAVENGK-VGLRSTVIVGRVDRQT 228 R V+V+ IP L E+G+ V ++ G T Sbjct: 169 TQPYRLVMVDQSIP-QQLRVWEDGRGVIFQTVCSTGVPAAPT 209 >gi|218529555|ref|YP_002420371.1| peptidoglycan-binding protein [Methylobacterium chloromethanicum CM4] gi|218521858|gb|ACK82443.1| Peptidoglycan-binding domain 1 protein [Methylobacterium chloromethanicum CM4] Length = 232 Score = 49.8 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 19/56 (33%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V ++ L+ G G +AV FQ GL G+ T A+ Sbjct: 2 DVAAIQRALLARGYDLGKSGADGDAGPRTIAAVTAFQRSAGLVADGIAGPKTQAAL 57 >gi|157692648|ref|YP_001487110.1| peptidase [Bacillus pumilus SAFR-032] gi|157681406|gb|ABV62550.1| S41 family carboxy-terminal processing peptidase [Bacillus pumilus SAFR-032] Length = 461 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 10/100 (10%) Query: 76 AQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 Q + ++ Y + P L P + L +S V+ ++ LD + + Sbjct: 353 PQVKASLPSYAKL------PYLSPKKTYQLNDSGDEVKAAQKMFQA---LDYKAKANGEY 403 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 D ++ VK FQ + L G++ T + + +++ Sbjct: 404 DQAFQAIVKKFQTDNDLKADGILTGDTTTVLMTKIQDKLK 443 >gi|270160068|ref|ZP_06188724.1| ErfK/YbiS/YcfS/YnhG family protein [Legionella longbeachae D-4968] gi|289165151|ref|YP_003455289.1| hypothetical protein LLO_1815 [Legionella longbeachae NSW150] gi|269988407|gb|EEZ94662.1| ErfK/YbiS/YcfS/YnhG family protein [Legionella longbeachae D-4968] gi|288858324|emb|CBJ12192.1| hypothetical protein LLO_1815 [Legionella longbeachae NSW150] Length = 295 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 64/185 (34%), Gaps = 47/185 (25%) Query: 196 VLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N+ L EN V L + +GR +TP+ +++ + NP W P ++++ Sbjct: 100 IVINLAEYRLYYFPENENVVLTFPIGIGRKGWKTPLGVTKVVAKVANPKWR-PTKNLREE 158 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ +L EE+ G N + + Sbjct: 159 ----AEKNGDFL----------------PEEL--------------PSGPYNPLGQYTLR 184 Query: 315 F--YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH-IEEV 371 H T V ++GC+R+ D+ L + P ++ I + Sbjct: 185 LGWP-TFLI--HGTNRQDGIGARV---SAGCIRM-YPDDI-ELLFRSVPVGTQVRIINQP 236 Query: 372 VKTRK 376 VKT K Sbjct: 237 VKTGK 241 >gi|297201935|ref|ZP_06919332.1| lipoprotein [Streptomyces sviceus ATCC 29083] gi|197712688|gb|EDY56722.1| lipoprotein [Streptomyces sviceus ATCC 29083] Length = 279 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 26/137 (18%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST--- 161 G+S V+ L+ RL L G + ++D E AVK FQ + GL +G D+ T Sbjct: 77 GDSGRDVRELQARLRQVAWL--YDGPTGSYDDLTERAVKGFQGKRGLPRTGRTDTVTWKR 134 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLL----------EQKMGLRYVLVNIPAASLEAVENG 211 L+AM + L + + R + ++ + +L + +G Sbjct: 135 LKAMTHEPGK-----------WELYLMGGQPADAPDPRCLTGRVLCISKTSRTLRWMIDG 183 Query: 212 KVGLRSTVIVGRVDRQT 228 + + +V G V T Sbjct: 184 RTVMTVSVRFGSVGTPT 200 >gi|304409318|ref|ZP_07390938.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS183] gi|307303676|ref|ZP_07583429.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica BA175] gi|304351836|gb|EFM16234.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS183] gi|306912574|gb|EFN42997.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica BA175] Length = 557 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P LP+ + +S +Q L L + + FD +E+ +K FQ +HGL Sbjct: 471 PNLPMMDISQKSSPGQLQWLENALAHVN--NRNARRVNQFDVQLENDLKSFQSQHGLKAD 528 Query: 155 GMVDSSTLEAMN 166 G+ + TL +N Sbjct: 529 GIAGNQTLVRLN 540 >gi|217974314|ref|YP_002359065.1| peptidoglycan-binding domain 1 protein [Shewanella baltica OS223] gi|217499449|gb|ACK47642.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS223] Length = 557 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P LP+ + +S +Q L L + + FD +E+ +K FQ +HGL Sbjct: 471 PNLPMMDISQKSSPGQLQWLENALAHVN--NRNARRVNQFDVQLENDLKSFQSQHGLKAD 528 Query: 155 GMVDSSTLEAMN 166 G+ + TL +N Sbjct: 529 GIAGNQTLVRLN 540 >gi|282881413|ref|ZP_06290089.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] gi|281304711|gb|EFA96795.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] Length = 289 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 4/74 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPS----KGLSVAFDAYVESAVKLFQMRHGL 151 + R L G V L L ++ S K +DA + SAVK FQ GL Sbjct: 121 SIGDRTLKTGIHGSDVTSLTGYLATGLYINRSWIKEKEGYALYDATIASAVKHFQKDAGL 180 Query: 152 DPSGMVDSSTLEAM 165 +G+ D +T+ + Sbjct: 181 PQTGVADQTTINKL 194 Score = 40.6 bits (94), Expect = 0.55, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 106 NSSVSVQRLRERLIISGDLDPSK------GLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + V L L +G K F + +AV+ FQ + L +G D Sbjct: 219 DKGTDVTELVNLLTKAGFAPDPKKIVMTSDGRTEFTKDIATAVRFFQAYNNLSVTGRADE 278 Query: 160 STLEAM 165 +T++A+ Sbjct: 279 ATIKAL 284 >gi|94266656|ref|ZP_01290333.1| ErfK/YbiS/YcfS/YnhG [delta proteobacterium MLMS-1] gi|93452703|gb|EAT03254.1| ErfK/YbiS/YcfS/YnhG [delta proteobacterium MLMS-1] Length = 328 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 52/170 (30%) Query: 184 KKLLEQKMG--LRYVLVNIPAASLEAVE---NGKVGLRSTVIVGRVDRQTPILHSRINRI 238 +++L +++N+ L + L V +G +TP RI Sbjct: 117 RRVLPDFTPTAEPAIVINLAEKRLYYFHRRGDEAAVLTFPVGIGADYGETPTGEYRITNK 176 Query: 239 MFNPYWVIPRSI--IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNF 296 + P W +P SI + ++ ++ Sbjct: 177 LVEPSWTVPPSIRQRRPELPPIV------------------------------------- 199 Query: 297 IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 PG N M S ++ S + Y+H T P ++ R T GC+R+ Sbjct: 200 ----PPGPDNPMGSHALQL-SGGSYYIHGTNRPW---SIGRRATQGCLRL 241 >gi|56750889|ref|YP_171590.1| hypothetical protein syc0880_c [Synechococcus elongatus PCC 6301] gi|56685848|dbj|BAD79070.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 208 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 36/147 (24%), Gaps = 52/147 (35%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 + + V +G+ +TP R+ + NP W P Sbjct: 92 RVTVYRDRLAIASYPVGIGKPGWETPRGTFRVMSKIVNPTWQHPW--------------- 136 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS--TKIEFYSRNNT 321 G V PG N + +N+ Sbjct: 137 -------------NGSLV-------------------PPGPNNPLGDRWIGFWTDGKNSI 164 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRN 348 H T L + GCVR++N Sbjct: 165 GFHGTTAESLIGQ---AVSHGCVRMKN 188 >gi|323464476|gb|ADX76629.1| carboxy-terminal processing proteinase ctpA, putative [Staphylococcus pseudintermedius ED99] Length = 509 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 13/92 (14%) Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 A Y++I +P + H G V+ ++ L G + ++A + +A Sbjct: 410 ADYENI------SVIPTKTTYHQGQEDKHVKSIKIGLKALGY--DVGTIDEHYNAQLTTA 461 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 VK FQ ++ L +GM + T N R+ Sbjct: 462 VKQFQQKNDLTANGMFNKET----NGVFTERL 489 >gi|307825945|ref|ZP_07656160.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] gi|307733064|gb|EFO03926.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacter tundripaludum SV96] Length = 338 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 65/197 (32%), Gaps = 45/197 (22%) Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRI--KKLLEQKMGLRYVLVNIPAASLEAV---ENG 211 + + + +N P R + + ++R+ +++L + +NI + + G Sbjct: 63 LGQTEIVRLN-PDVDRWQVKKDEIVRLSNRRILPDTPHEG-ITLNIAEYRMYYYPPTQKG 120 Query: 212 K--VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDN 269 + +GR D +TP+ + I + + +P W P SI ++ Sbjct: 121 VAPQVMSYAHGIGRQDWKTPLGKTSIVQKVKDPAWHPPESIRRE---------------- 164 Query: 270 NIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEP 329 ++ PG N + + + +H T Sbjct: 165 -------------------HAANGDPLPAVVQPGPHNPLGAYMLHLAVPGGYLIHGTDID 205 Query: 330 ILFNNVVRFETSGCVRV 346 ++ + T GCVR+ Sbjct: 206 KIYGIGM-QITHGCVRM 221 >gi|168467173|ref|ZP_02701015.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630351|gb|EDX48977.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 321 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P + I+ K + + + V Sbjct: 151 ANPTWT-PTANIR---------------------ARYKAQGIDLPAVV------------ 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 -PAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|288922819|ref|ZP_06416985.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia sp. EUN1f] gi|288345834|gb|EFC80197.1| ErfK/YbiS/YcfS/YnhG family protein [Frankia sp. EUN1f] Length = 300 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 8/83 (9%) Query: 98 PIRP--LHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P P L G + + L+ +L+ +G L G F + AV Q G+ Sbjct: 99 PTGPPILRPGATGPEILELQRQLMTAGYWLGTPDG---TFGLLTQQAVLAVQKTAGIGLD 155 Query: 155 GMVDSSTLEAM--NVPVDLRIRQ 175 G+V +T A+ V D R Q Sbjct: 156 GLVGPATRAAIARGVRPDARSTQ 178 >gi|254384384|ref|ZP_04999726.1| hypothetical protein SSAG_04028 [Streptomyces sp. Mg1] gi|194343271|gb|EDX24237.1| hypothetical protein SSAG_04028 [Streptomyces sp. Mg1] Length = 120 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 4/68 (5%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMV 157 R L ++ V L+ RL G S L +D +++ A + FQ ++G+ G+ Sbjct: 50 RTLRRHDTGPEVVDLQRRLAQLGLW--SLPLRGRYDRHLDDAAQRFQAKYGVRGDPPGVY 107 Query: 158 DSSTLEAM 165 +T + + Sbjct: 108 GPATRQRL 115 >gi|76825185|gb|AAI06861.1| Mmp21 protein [Mus musculus] Length = 415 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 45/135 (33%), Gaps = 34/135 (25%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL 102 + + + D P+ + IA A Q L + GW E+P Sbjct: 15 WLVAPQPTQPERLFHSRDRSDLEPSPLSQAKPIADLHDA----QSFLLKYGWSEIPSPK- 69 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 S G+ V F + AV+ FQ + L SG +DS TL Sbjct: 70 -----------------------ESAGVPVGF--TLAQAVRRFQKANRLPASGELDSPTL 104 Query: 163 EAMNVP----VDLRI 173 AMN P D R+ Sbjct: 105 AAMNKPRCGVPDTRL 119 >gi|220916978|ref|YP_002492282.1| Peptidoglycan-binding domain 1 protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219954832|gb|ACL65216.1| Peptidoglycan-binding domain 1 protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 136 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 9/84 (10%) Query: 91 RGGWPELPIRP---LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 RG P +P P L G LR+R G L + + D +A++ FQ Sbjct: 47 RGERPRVPSSPEALLAPGAVGEIQDALRDR----GYLGAHRRGEL--DRATSAALRRFQE 100 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDL 171 GL +G D TL ++V Sbjct: 101 AQGLAATGAPDRETLRRLHVDPAR 124 >gi|169335908|ref|ZP_02863101.1| hypothetical protein ANASTE_02343 [Anaerofustis stercorihominis DSM 17244] gi|169258646|gb|EDS72612.1| hypothetical protein ANASTE_02343 [Anaerofustis stercorihominis DSM 17244] Length = 279 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ ++ +E LI +G L + + FD+ +AVK +Q + GL +G +D+ Sbjct: 213 TYKQGHKGDVIKDYQEILIRTGYLKGTA--NGTFDSKTTAAVKSYQTKKGLSVTGNLDTK 270 Query: 161 TLEAM 165 T+EA+ Sbjct: 271 TMEAL 275 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + G S + + L L S + FD+ AVK +Q G+ + +D Sbjct: 75 SKTFSEGESGDEILSYKLILYYLDYL--SDTPNNTFDSTTTKAVKEYQTSRGIKETSKLD 132 Query: 159 SSTLEAM 165 +T++ + Sbjct: 133 KTTMQTL 139 Score = 38.3 bits (88), Expect = 2.7, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G SS +++ L G L + + A + A + +Q L +G + T Sbjct: 146 YKTGKSSEDIKKYNYILYYLGYLTKEP--NSTYTAETKVACENYQKAKSLPVTGTMTPQT 203 Query: 162 LEAM 165 ++ Sbjct: 204 RRSL 207 >gi|119484925|ref|ZP_01619407.1| hypothetical protein L8106_15670 [Lyngbya sp. PCC 8106] gi|119457743|gb|EAW38867.1| hypothetical protein L8106_15670 [Lyngbya sp. PCC 8106] Length = 164 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG + +V L+ L I G + + F + E AVK FQ + L G+V S T Sbjct: 17 LQLGKTGDNVIYLQNSLNIVG---ANLRIDGVFGSDTEIAVKRFQRDNELIIDGIVGSQT 73 Query: 162 LEAM 165 + Sbjct: 74 WRIL 77 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +GN+ V L+ L +++ + + F AVKLFQ++HGL +G+V +T Sbjct: 95 LKVGNTGKIVFELQTHLN---NIEANLVVDGIFGVKTLDAVKLFQLKHGLVANGIVGLNT 151 Query: 162 LEA-MN 166 + +N Sbjct: 152 WKEILN 157 >gi|89098735|ref|ZP_01171616.1| carboxyl-terminal processing protease [Bacillus sp. NRRL B-14911] gi|89086411|gb|EAR65531.1| carboxyl-terminal processing protease [Bacillus sp. NRRL B-14911] Length = 475 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +PL L ++ V+ + L G L P + F E+AVK FQ GL+ +G VDS Sbjct: 386 KPLVLDMNNEQVKNAQIMLDGLG-LSPGRKDG-YFSEATETAVKAFQQHQGLEATGKVDS 443 Query: 160 STLEAM 165 T A+ Sbjct: 444 KTAAAL 449 >gi|312143244|ref|YP_003994690.1| Peptidoglycan-binding domain 1 protein [Halanaerobium sp. 'sapolanicus'] gi|311903895|gb|ADQ14336.1| Peptidoglycan-binding domain 1 protein [Halanaerobium sp. 'sapolanicus'] Length = 337 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + +V++ ++ L G + + AV FQ GL G++ T Sbjct: 78 LRENDRGENVKKAQKILRQKGFYQGE--IDGHYGHQTRLAVIKFQKIAGLQADGVLGPKT 135 Query: 162 LEAM 165 L + Sbjct: 136 LSKL 139 >gi|326803551|ref|YP_004321369.1| peptidase, S41 family [Aerococcus urinae ACS-120-V-Col10a] gi|326650259|gb|AEA00442.1| peptidase, S41 family [Aerococcus urinae ACS-120-V-Col10a] Length = 497 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 6/90 (6%) Query: 76 AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 E + Y ++ G + LG S ++ ++ +L + G L+ S + FD Sbjct: 387 PDIEAKLPDYSELSLVDG-----SQNYQLGEESDKIKNIQAQLALLGYLE-SDQVQGKFD 440 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++A+ FQ H L+ +G V+ T +A+ Sbjct: 441 EQTQTALGAFQADHELEKTGQVNDETAQAL 470 >gi|152999733|ref|YP_001365414.1| peptidoglycan-binding domain-containing protein [Shewanella baltica OS185] gi|151364351|gb|ABS07351.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS185] Length = 557 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 28/51 (54%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 FD +E+ +K FQ +HGL G+ + TL +N+ + + +L N +R Sbjct: 506 NQFDVQLENDLKSFQSQHGLKADGIAGNQTLVRLNLYLSQQGPRLTDNGVR 556 >gi|56413799|ref|YP_150874.1| hypothetical protein SPA1635 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362722|ref|YP_002142359.1| hypothetical protein SSPA1520 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128056|gb|AAV77562.1| putative exported protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094199|emb|CAR59703.1| putative exported protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 321 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P + I+ K + + + V Sbjct: 151 ANPTWT-PTANIR---------------------ARYKAQGIDLPAVV------------ 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 -PAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|15894296|ref|NP_347645.1| cell wall biogenesis enzymedomain-containing related to L-alanoyl-D-glutamate peptidase); peptodoglycan-binding domain [Clostridium acetobutylicum ATCC 824] gi|15023918|gb|AAK78985.1|AE007616_7 Cell wall biogenesis enzyme (N-terminal domain related to N-Acetylmuramoyl-L-alanine amidase and C-terminal domain related to L-alanoyl-D-glutamate peptidase); peptodoglycan-binding domain [Clostridium acetobutylicum ATCC 824] gi|325508424|gb|ADZ20060.1| Cell wall biogenesis enzyme [Clostridium acetobutylicum EA 2018] Length = 279 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P P L L SV+ L+ L ++ FD+ V+ FQ+ H L P Sbjct: 2 PTFP--TLRLYYEGPSVRILQMNLYGLNYRYNGLKVTGVFDSLTYEVVRDFQVEHKLVPD 59 Query: 155 GMVDSSTLEAM 165 G+V T + Sbjct: 60 GIVGPITWSVL 70 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 16/33 (48%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F AV FQ +GL +G+VD T + + Sbjct: 94 IFGPVTIDAVTRFQSVNGLVKNGVVDPRTRQQL 126 >gi|126173395|ref|YP_001049544.1| peptidoglycan binding domain-containing protein [Shewanella baltica OS155] gi|125996600|gb|ABN60675.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS155] Length = 557 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 20/35 (57%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 FD +E+ +K FQ +HGL G+ + TL +N Sbjct: 506 NQFDVQLENDLKSFQSQHGLKADGIAGNQTLVRLN 540 >gi|332706811|ref|ZP_08426872.1| N-acetylmuramoyl-L-alanine amidase [Lyngbya majuscula 3L] gi|332354695|gb|EGJ34174.1| N-acetylmuramoyl-L-alanine amidase [Lyngbya majuscula 3L] Length = 306 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 47/131 (35%), Gaps = 26/131 (19%) Query: 51 RFDNFLARVDMGIDSDIPIISKETIAQ-TEKAIAFYQDIL--------SRGGWPELP--- 98 L R+ + + P++ ++ Q T AI +Q I+ W + Sbjct: 184 ELQKALNRLKIKSPAGKPLVENGSLDQATIAAIKTFQAIVGINQTGIGDSTTWKTINQIL 243 Query: 99 ----IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +RP H G +V+ L+ R F + SAV FQ + GL Sbjct: 244 EQPILRPNHAG--GTTVKYLQRR--------VGTQADGIFGSGTASAVIRFQKQQGLTAD 293 Query: 155 GMVDSSTLEAM 165 G+V + T + Sbjct: 294 GIVGAQTWSQL 304 >gi|168239119|ref|ZP_02664177.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734349|ref|YP_002114220.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930801|ref|ZP_03221674.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194709851|gb|ACF89072.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288095|gb|EDY27482.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320260|gb|EDZ05464.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322616591|gb|EFY13500.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619894|gb|EFY16768.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622462|gb|EFY19307.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629420|gb|EFY26197.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633908|gb|EFY30646.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636839|gb|EFY33542.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641361|gb|EFY38000.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645126|gb|EFY41655.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652290|gb|EFY48646.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655641|gb|EFY51943.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660946|gb|EFY57176.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665468|gb|EFY61656.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667555|gb|EFY63716.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673651|gb|EFY69753.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677577|gb|EFY73641.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679758|gb|EFY75797.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687231|gb|EFY83203.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194017|gb|EFZ79218.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199426|gb|EFZ84519.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202442|gb|EFZ87484.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208845|gb|EFZ93783.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210653|gb|EFZ95532.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217819|gb|EGA02534.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323229622|gb|EGA13745.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232847|gb|EGA16943.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240117|gb|EGA24161.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242896|gb|EGA26917.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246811|gb|EGA30781.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254289|gb|EGA38106.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323261592|gb|EGA45169.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266984|gb|EGA50469.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272088|gb|EGA55502.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 321 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P + I+ K + + + V Sbjct: 151 ANPTWT-PTANIR---------------------ARYKAQGIDLPAVV------------ 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 -PAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|145297589|ref|YP_001140430.1| general secretion pathway protein A [Aeromonas salmonicida subsp. salmonicida A449] gi|142850361|gb|ABO88682.1| general secretion pathway protein A [Aeromonas salmonicida subsp. salmonicida A449] Length = 547 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 24/44 (54%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L FDA +++ ++ FQ GL+P G+ S+TL +NV Sbjct: 466 LQQPDRKVRRFDAELKNKLQQFQREQGLNPDGIAGSNTLLRLNV 509 >gi|160874352|ref|YP_001553668.1| peptidoglycan-binding domain-containing protein [Shewanella baltica OS195] gi|160859874|gb|ABX48408.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS195] gi|315266587|gb|ADT93440.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS678] Length = 557 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 20/35 (57%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 FD +E+ +K FQ +HGL G+ + TL +N Sbjct: 506 NQFDVQLENDLKSFQSQHGLKADGIAGNQTLVRLN 540 >gi|290962512|ref|YP_003493694.1| hypothetical protein SCAB_82141 [Streptomyces scabiei 87.22] gi|260652038|emb|CBG75170.1| putative membrane protein [Streptomyces scabiei 87.22] Length = 299 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVDS 159 L LG+ V L+ RL G + +D V+SAV+ +Q+ L G+ Sbjct: 227 LGLGDRGAEVTELQLRLNEVGFYNGDADGE--YDREVQSAVRGYQLTRVLLEDESGVYGE 284 Query: 160 STLEAM 165 +T ++ Sbjct: 285 ATRASL 290 >gi|146295638|ref|YP_001179409.1| carboxyl-terminal protease [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409214|gb|ABP66218.1| carboxyl-terminal protease [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 472 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + G+ + V ++RL L + D +A+K FQ + L +G++D Sbjct: 381 TKKYKKGDMDLEVLAAQQRLYYLRYLS---SWTGKMDDATVNAIKKFQKDNKLSLNGVLD 437 Query: 159 SSTLEAMN 166 +T + +N Sbjct: 438 ITTQKKLN 445 >gi|290954841|ref|YP_003486023.1| peptidoglycan-binding surface protein [Streptomyces scabiei 87.22] gi|260644367|emb|CBG67452.1| putative peptidoglycan-binding surface protein [Streptomyces scabiei 87.22] Length = 275 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 21/43 (48%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 KG+ +F ++AV+ FQ GL+ G+V T + P Sbjct: 231 DPKGIDASFGPNTKAAVQRFQRSRGLEDDGIVGPMTWRELRKP 273 >gi|73662628|ref|YP_301409.1| carboxy-terminal processing protease [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|94709230|sp|Q49XN1|CTPAL_STAS1 RecName: Full=Probable CtpA-like serine protease gi|72495143|dbj|BAE18464.1| carboxy-terminal processing protease [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 491 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + LG+ +V+ ++ L + G S FD+ +E A+K FQ ++ LD +G + Sbjct: 405 KTYQLGDDDKNVKTMKVGLNVLGY--HINNHSTEFDSELEDALKSFQKKNNLDVNGTFNK 462 Query: 160 ST 161 ST Sbjct: 463 ST 464 >gi|311030560|ref|ZP_07708650.1| hypothetical protein Bm3-1_08466 [Bacillus sp. m3-13] Length = 352 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDSS 160 + G + V L+ RL +G + + AVK FQ GLD G+V Sbjct: 34 IQKGATGNDVVELQARLQYNGYYH--ARIDGVYGWSTYWAVKNFQQEFGLDHVDGLVGPK 91 Query: 161 TLEAM 165 T E + Sbjct: 92 TKEML 96 >gi|168264276|ref|ZP_02686249.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205347257|gb|EDZ33888.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 321 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P + I+ K + + + V Sbjct: 151 ANPTWT-PTANIR---------------------ARYKAQGIDLPAVV------------ 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 -PAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|168244286|ref|ZP_02669218.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194444973|ref|YP_002040469.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450628|ref|YP_002045214.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194403636|gb|ACF63858.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408932|gb|ACF69151.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205336782|gb|EDZ23546.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 321 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P + I+ K + + + V Sbjct: 151 ANPTWT-PTANIR---------------------ARYKAQGIDLPAVV------------ 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 -PAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|168233093|ref|ZP_02658151.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472579|ref|ZP_03078563.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|198243629|ref|YP_002215923.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205353051|ref|YP_002226852.1| hypothetical protein SG1906 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857278|ref|YP_002243929.1| hypothetical protein SEN1834 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194458943|gb|EDX47782.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197938145|gb|ACH75478.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205272832|emb|CAR37758.1| putative exported protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205332648|gb|EDZ19412.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|206709081|emb|CAR33414.1| putative exported protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326623671|gb|EGE30016.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628130|gb|EGE34473.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 321 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P + I+ K + + + V Sbjct: 151 ANPTWT-PTANIR---------------------ARYKAQGIDLPAVV------------ 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 -PAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|161503692|ref|YP_001570804.1| hypothetical protein SARI_01776 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865039|gb|ABX21662.1| hypothetical protein SARI_01776 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 319 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P + I+ K + + + V Sbjct: 151 ANPTWT-PTANIR---------------------ARYKAQGIDLPAVV------------ 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 -PAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|62179735|ref|YP_216152.1| hypothetical protein SC1165 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161614556|ref|YP_001588521.1| hypothetical protein SPAB_02305 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167553626|ref|ZP_02347374.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|62127368|gb|AAX65071.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161363920|gb|ABX67688.1| hypothetical protein SPAB_02305 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|205321976|gb|EDZ09815.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|322714205|gb|EFZ05776.1| Peptidoglycan-binding LysM [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 321 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P + I+ K + + + V Sbjct: 151 ANPTWT-PTANIR---------------------ARYKAQGIDLPAVV------------ 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 -PAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|302333033|gb|ADL23226.1| serine protease [Staphylococcus aureus subsp. aureus JKD6159] Length = 496 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G + FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNETTQFDQALENQVKAFQQTNKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|291439401|ref|ZP_06578791.1| predicted protein [Streptomyces ghanaensis ATCC 14672] gi|291342296|gb|EFE69252.1| predicted protein [Streptomyces ghanaensis ATCC 14672] Length = 390 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 6/76 (7%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L R + + L+ L+ G + G F + AV FQ R+ L Sbjct: 235 WPLLRKRT---EDQYTRGRALQHLLMAHGYEVKADGF---FGDETQDAVMDFQRRNHLPS 288 Query: 154 SGMVDSSTLEAMNVPV 169 G V T A+ PV Sbjct: 289 DGKVGKDTWPALVKPV 304 Score = 43.3 bits (101), Expect = 0.073, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L ++P+ G +V L+E L +G +S F A ++ FQ H L P Sbjct: 297 WPAL-VKPVGPGADEHTVLALQELLHNTG--QGGTEVSGEFTAATAEDLRFFQRGHDLPP 353 Query: 154 SGMVDSSTLEAM 165 +G D T A+ Sbjct: 354 TGRADVDTWLAL 365 >gi|295318214|gb|ADF98591.1| glycosyl hydrolase, family 25/peptidoglycan binding domain protein [Clostridium botulinum F str. 230613] Length = 307 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 22/59 (37%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G + +++ LI G S G F +A+K FQ L G+V T Sbjct: 249 KQGARGGITKVIQQMLISIGYPVGSHGADGVFGDSTVTAIKAFQKDCHLVADGIVGKET 307 >gi|153940604|ref|YP_001390124.1| glycosy hydrolase family protein [Clostridium botulinum F str. Langeland] gi|152936500|gb|ABS41998.1| glycosyl hydrolase, family 25/peptidoglycan binding domain protein [Clostridium botulinum F str. Langeland] Length = 309 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 22/59 (37%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G + +++ LI G S G F +A+K FQ L G+V T Sbjct: 251 KQGARGGITKVIQQMLISIGYPVGSHGADGVFGDSTVTAIKAFQKDCHLVADGIVGKET 309 >gi|16764570|ref|NP_460185.1| periplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992001|ref|ZP_02573100.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168822318|ref|ZP_02834318.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197251546|ref|YP_002146827.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197261709|ref|ZP_03161783.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|238910965|ref|ZP_04654802.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16419733|gb|AAL20144.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197215249|gb|ACH52646.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197239964|gb|EDY22584.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205329693|gb|EDZ16457.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205341233|gb|EDZ27997.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|261246427|emb|CBG24236.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992991|gb|ACY87876.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157756|emb|CBW17248.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912203|dbj|BAJ36177.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223831|gb|EFX48894.1| L,D-transpeptidase YcfS [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129484|gb|ADX16914.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988106|gb|AEF07089.1| putative periplasmic protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 321 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P + I+ K + + + V Sbjct: 151 ANPTWT-PTANIR---------------------ARYKAQGIDLPAVV------------ 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 -PAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|260892380|ref|YP_003238477.1| ErfK/YbiS/YcfS/YnhG family protein [Ammonifex degensii KC4] gi|260864521|gb|ACX51627.1| ErfK/YbiS/YcfS/YnhG family protein [Ammonifex degensii KC4] Length = 206 Score = 49.4 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V ++ L G +S FDA + AV+ FQ H L G VD Sbjct: 141 RVLREGDCGSDVMEVQRVLRRQGFYSG--PISGRFDAQTKEAVRRFQQHHRLPSLGEVDE 198 Query: 160 STLEAM 165 T E + Sbjct: 199 KTYELL 204 >gi|239931029|ref|ZP_04687982.1| Peptidoglycan-binding domain 1 protein [Streptomyces ghanaensis ATCC 14672] Length = 370 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 6/76 (7%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L R + + L+ L+ G + G F + AV FQ R+ L Sbjct: 215 WPLLRKRT---EDQYTRGRALQHLLMAHGYEVKADGF---FGDETQDAVMDFQRRNHLPS 268 Query: 154 SGMVDSSTLEAMNVPV 169 G V T A+ PV Sbjct: 269 DGKVGKDTWPALVKPV 284 Score = 43.3 bits (101), Expect = 0.079, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L ++P+ G +V L+E L +G +S F A ++ FQ H L P Sbjct: 277 WPAL-VKPVGPGADEHTVLALQELLHNTG--QGGTEVSGEFTAATAEDLRFFQRGHDLPP 333 Query: 154 SGMVDSSTLEAM 165 +G D T A+ Sbjct: 334 TGRADVDTWLAL 345 >gi|254478173|ref|ZP_05091555.1| C-terminal processing peptidase subfamily, putative [Carboxydibrachium pacificum DSM 12653] gi|214035902|gb|EEB76594.1| C-terminal processing peptidase subfamily, putative [Carboxydibrachium pacificum DSM 12653] Length = 470 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 61/180 (33%), Gaps = 35/180 (19%) Query: 3 GYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG 62 YL K V ++ I + + ++ E+ + Sbjct: 285 SYLTKPKYKLAVLVNKGTASAAEILAGAIQDTKVGFLVGENTYG-------------KGT 331 Query: 63 IDSDIPIISKETIAQTEKAIAFY-----QDILSRGGWPELPIR------------PLHLG 105 + S +P+ T IA Y + I G P++ ++ L +G Sbjct: 332 VQSVVPLQDGSGFKLT---IARYKLPSGRYIGKEGLTPDVYVKNVQYTADIKFAGELKIG 388 Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + V+ L++ L + + F +AVK Q + GL P+G+ D +T A+ Sbjct: 389 SRGNEVKILQKYLNLLKF--NAGPEDGIFGPKTANAVKELQKKAGLSPTGVFDKNTYNAL 446 >gi|197122202|ref|YP_002134153.1| peptidoglycan-binding protein [Anaeromyxobacter sp. K] gi|196172051|gb|ACG73024.1| Peptidoglycan-binding domain 1 protein [Anaeromyxobacter sp. K] Length = 136 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 9/84 (10%) Query: 91 RGGWPELPIRP---LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 RG P +P P L G LR+R G L + + D +A++ FQ Sbjct: 47 RGERPRVPSSPEALLAPGAVGEIQDALRDR----GYLGAHRRGEL--DRATSAALRRFQE 100 Query: 148 RHGLDPSGMVDSSTLEAMNVPVDL 171 GL +G D TL ++V Sbjct: 101 AQGLAATGAPDRETLRRLHVDPAR 124 >gi|20808900|ref|NP_624071.1| spore cortex-lytic enzyme prepeptide [Thermoanaerobacter tengcongensis MB4] gi|20517559|gb|AAM25675.1| spore cortex-lytic enzyme prepeptide [Thermoanaerobacter tengcongensis MB4] Length = 234 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GN+ V +++ RL G D + F AV+ FQ +GL +G+VD T A Sbjct: 40 GNTGSDVAKVQARLKAWGYYDG--PVDGFFGVKTWLAVRKFQAYNGLAVTGIVDDDTKVA 97 Query: 165 M 165 + Sbjct: 98 L 98 >gi|313896346|ref|ZP_07829899.1| NlpC/P60 family protein [Selenomonas sp. oral taxon 137 str. F0430] gi|320529278|ref|ZP_08030368.1| NlpC/P60 family protein [Selenomonas artemidis F0399] gi|312975145|gb|EFR40607.1| NlpC/P60 family protein [Selenomonas sp. oral taxon 137 str. F0430] gi|320138452|gb|EFW30344.1| NlpC/P60 family protein [Selenomonas artemidis F0399] Length = 246 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V L++ L +G K + FD E AV FQ + +G+V+++ Sbjct: 27 TLREGSHGHEVLVLQQALQNAGY--KIKNANGVFDKDTERAVAEFQRDSKIKITGVVNNA 84 Query: 161 TLEAMNVPVDLR 172 T A+ R Sbjct: 85 TWRALKDAPATR 96 >gi|294629109|ref|ZP_06707669.1| peptidodoglycan-binding membrane protein [Streptomyces sp. e14] gi|292832442|gb|EFF90791.1| peptidodoglycan-binding membrane protein [Streptomyces sp. e14] Length = 184 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 7/81 (8%) Query: 90 SRGGWPELPIR---PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 + G P P R L G+ V L+ RL + ++ +D VE +V+++Q Sbjct: 102 ATTGKPSAPARLGPVLQRGDHGPEVAELQSRLAEL--YLYTGPVNGDYDRRVEDSVRVYQ 159 Query: 147 MRHGLDPS--GMVDSSTLEAM 165 G G+ +T ++ Sbjct: 160 WSRGTTSDGLGVYGPATRASL 180 >gi|187779103|ref|ZP_02995576.1| hypothetical protein CLOSPO_02698 [Clostridium sporogenes ATCC 15579] gi|187772728|gb|EDU36530.1| hypothetical protein CLOSPO_02698 [Clostridium sporogenes ATCC 15579] Length = 308 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++ LI G S G F E+AVK Q L G+V T Sbjct: 241 KKGAKGGITKAIQKMLINIGYPVGSSGADGVFGDGTETAVKAVQKDCNLSVDGIVGKETW 300 Query: 163 EAM 165 +A+ Sbjct: 301 KAL 303 >gi|172057401|ref|YP_001813861.1| peptidoglycan binding domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171989922|gb|ACB60844.1| Peptidoglycan-binding domain 1 protein [Exiguobacterium sibiricum 255-15] Length = 220 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 36/134 (26%) Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW------------------------ 94 D G ++ P + + A+ YQ + G W Sbjct: 91 ADGGKRAEFPAPPDPRLKRIVAAMKRYQ-MQWGGDWGSFPDYPHFQLYDAVNGQTKPLLG 149 Query: 95 PELPIRPLHLG---NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 P P +PL+ G ++ +++RL + L+ FD + +K FQ +H L Sbjct: 150 PRYPGQPLYAGAERMDRTLIRLIQKRLRL--------PLTGRFDQKLTQRIKQFQRQHRL 201 Query: 152 DPSGMVDSSTLEAM 165 G++ T + Sbjct: 202 AVDGIIGPVTWRHL 215 >gi|323228042|gb|EGA12183.1| hypothetical protein SEEM0055_19941 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] Length = 248 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P + I+ K + + + V Sbjct: 151 ANPTWT-PTANIR---------------------ARYKAQGIDLPAVV------------ 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 -PAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|225452582|ref|XP_002275556.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 315 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 103 HLGNSSVSVQRLRERLIISGDLD------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 H G+ + +L++ L G L + FD VESA+K +Q + L+ +G Sbjct: 50 HKGDKVEGIHKLKKYLGQFGYLSYSHSKYHTHANDDDFDDLVESAIKTYQTNYHLNATGS 109 Query: 157 VDSSTLEAMNVP 168 +DS T+ M P Sbjct: 110 LDSETVSQMVKP 121 >gi|159028466|emb|CAO89913.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 170 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 44/147 (29%), Gaps = 52/147 (35%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 + ++ KV + V VG+ +TP + ++ NP W P + Sbjct: 54 KVYVYQDSKVLAQFAVAVGKKGWETPTGKFEVRELVRNPVWKSPWT-------------- 99 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNNT 321 GK PG + + I F +N+ Sbjct: 100 --------------GKVS-------------------APGPNSPLGERWIGFWSDGKNSI 126 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRN 348 H TP R + GCVR+RN Sbjct: 127 GFHGTPAENSLG---RAASHGCVRMRN 150 >gi|200389840|ref|ZP_03216451.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602285|gb|EDZ00831.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 321 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P + I+ K + + + V Sbjct: 151 ANPTWT-PTANIR---------------------ARYKAQGIDLPAVV------------ 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 -PAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|291550276|emb|CBL26538.1| peptidoglycan transpeptidase precursor, ErfK-YbiS-YhnG family [Ruminococcus torques L2-14] Length = 483 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG--RVDRQTP 229 Q G Y+ V+IPA + V NG V L + V+ G +R+TP Sbjct: 348 AQDWGTTYLEVDIPAQHMWYVVNGAVQLETDVVTGLPTPERETP 391 >gi|319400781|gb|EFV89000.1| C-terminal processing peptidase family protein [Staphylococcus epidermidis FRI909] Length = 491 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + H G +V+ ++ L G + FD +ESA+K FQ + L +G D Sbjct: 405 KTYHQGEKDKNVKTMKIGLKALGY--QIDNETNIFDEQLESAIKTFQQDNNLKVNGNFDK 462 Query: 160 ST 161 T Sbjct: 463 KT 464 >gi|326779611|ref|ZP_08238876.1| Peptidoglycan-binding domain 1 protein [Streptomyces cf. griseus XylebKG-1] gi|326659944|gb|EGE44790.1| Peptidoglycan-binding domain 1 protein [Streptomyces cf. griseus XylebKG-1] Length = 399 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GM 156 L G+ V L+ RL G+ L ++ V +V ++Q + G+ Sbjct: 318 SSLRPGDRGPEVAELQTRLRTVGEWLYSGPVDGSSYSDQVAHSVAIYQSYKAIQGDPIGV 377 Query: 157 VDSSTLEAM 165 +T A+ Sbjct: 378 YGPNTRRAL 386 >gi|242242707|ref|ZP_04797152.1| S41A family carboxy-terminal peptidase [Staphylococcus epidermidis W23144] gi|242233843|gb|EES36155.1| S41A family carboxy-terminal peptidase [Staphylococcus epidermidis W23144] Length = 491 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + H G +V+ ++ L G + FD +ESA+K FQ + L +G D Sbjct: 405 KTYHQGEKDKNVKTMKIGLKALGY--QIDNETNIFDEQLESAIKTFQQDNNLKVNGNFDK 462 Query: 160 ST 161 T Sbjct: 463 KT 464 >gi|168003279|ref|XP_001754340.1| predicted protein [Physcomitrella patens subsp. patens] gi|162694442|gb|EDQ80790.1| predicted protein [Physcomitrella patens subsp. patens] Length = 861 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S V L+ L G L L+ F + A++ FQ+ G+ +G+ SS+ +A Sbjct: 423 GDSGPQVLDLQRALYWYGFLPKRTELTAYFGPGTKRALQQFQIAQGVPGTGVWGSSSRQA 482 Query: 165 M 165 + Sbjct: 483 L 483 >gi|145300422|ref|YP_001143263.1| peptidoglycan-binding LysM [Aeromonas salmonicida subsp. salmonicida A449] gi|142853194|gb|ABO91515.1| peptidoglycan-binding LysM [Aeromonas salmonicida subsp. salmonicida A449] Length = 308 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 57/205 (27%), Gaps = 49/205 (23%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRS-TVIVGRVDRQTPI-LHSRINRIMFNPYWVI 246 +++N+ L GK + + +G++ TP + + R P W Sbjct: 95 PDAPREGIVLNVAEMRLYYYPKGKKVVEVLPIGIGQLGTDTPENWVTSVQRKKAGPTWT- 153 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 + +Y + G N Sbjct: 154 ----------PTAKMHAEYAAR------------------------GESLPAVWPAGPDN 179 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 M + H T F +R + GCVR+RN + +L K P +R Sbjct: 180 PMGLFALYIGKMYAI--HGTNAQ--FGIGLR-VSHGCVRLRN--EDIEYLFKQIPVGTRV 232 Query: 367 H-----IEEVVKTRKTTPVKLATEV 386 I+ V+ +++ + Sbjct: 233 QFVNQPIKATVEPDGRRYLEVHQPL 257 >gi|81299458|ref|YP_399666.1| hypothetical protein Synpcc7942_0647 [Synechococcus elongatus PCC 7942] gi|81168339|gb|ABB56679.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942] Length = 180 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 36/147 (24%), Gaps = 52/147 (35%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 + + V +G+ +TP R+ + NP W P Sbjct: 64 RVTVYRDRLAIASYPVGIGKPGWETPRGTFRVMSKIVNPTWQHPW--------------- 108 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS--TKIEFYSRNNT 321 G V PG N + +N+ Sbjct: 109 -------------NGSLV-------------------PPGPNNPLGDRWIGFWTDGKNSI 136 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRN 348 H T L + GCVR++N Sbjct: 137 GFHGTTAESLIGQ---AVSHGCVRMKN 160 >gi|23308683|ref|NP_694423.1| matrix metalloproteinase-21 precursor [Mus musculus] gi|50401063|sp|Q8K3F2|MMP21_MOUSE RecName: Full=Matrix metalloproteinase-21; Short=MMP-21; Flags: Precursor gi|22252944|gb|AAM94032.1| matrix metalloproteinase-21 [Mus musculus] gi|22854900|gb|AAN09805.1| matrix metalloproteinase 21 [Mus musculus] gi|76827853|gb|AAI06862.1| Matrix metallopeptidase 21 [Mus musculus] gi|148685821|gb|EDL17768.1| matrix metallopeptidase 21 [Mus musculus] Length = 568 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 45/135 (33%), Gaps = 34/135 (25%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL 102 + + + D P+ + IA A Q L + GW E+P Sbjct: 15 WLVAPQPTQPERLFHSRDRSDLEPSPLSQAKPIADLHDA----QSFLLKYGWSEIPSPK- 69 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 S G+ V F + AV+ FQ + L SG +DS TL Sbjct: 70 -----------------------ESAGVPVGF--TLAQAVRRFQKANRLPASGELDSPTL 104 Query: 163 EAMNVP----VDLRI 173 AMN P D R+ Sbjct: 105 AAMNKPRCGVPDTRL 119 >gi|295703232|ref|YP_003596307.1| putative peptidoglycan binding domain-containing protein [Bacillus megaterium DSM 319] gi|294800891|gb|ADF37957.1| putative peptidoglycan binding domain protein [Bacillus megaterium DSM 319] Length = 139 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 9/75 (12%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + L G++ V+ +++ L + F E AVK FQ++ G G+V Sbjct: 65 SVAALGKGSAGEEVKTVQKSLGL--------NPDGYFGLETEQAVKEFQVKQGYTADGVV 116 Query: 158 DSSTLEAM-NVPVDL 171 T +A+ N D Sbjct: 117 GPQTWDALVNTSKDT 131 >gi|121996923|ref|YP_001001710.1| ErfK/YbiS/YcfS/YnhG family protein [Halorhodospira halophila SL1] gi|121588328|gb|ABM60908.1| ErfK/YbiS/YcfS/YnhG family protein [Halorhodospira halophila SL1] Length = 355 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 56/166 (33%), Gaps = 43/166 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L V++N+ L E+ V V +GR+D TP+ + + + +P Sbjct: 128 RYILP-DAPREGVVINLAEMRLYHYPEDENVVEVFPVSIGRMDWSTPLGRTEVTGKIQDP 186 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P SI ++ E+ E EV P Sbjct: 187 AWYPPESIRKQ---------------------AEQRGETMPREV--------------PP 211 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVR 347 G N + I + Y +H T P +R T GC+R+ Sbjct: 212 GPDNPLGRHAILL--DISGYLLHGTNRPW--GIGMRA-THGCIRLH 252 >gi|323222137|gb|EGA06522.1| hypothetical protein SEEM0047_13609 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] Length = 247 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P + I+ K + + + V Sbjct: 151 ANPTWT-PTANIR---------------------ARYKAQGIDLPAVV------------ 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 -PAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|218130611|ref|ZP_03459415.1| hypothetical protein BACEGG_02200 [Bacteroides eggerthii DSM 20697] gi|217986955|gb|EEC53286.1| hypothetical protein BACEGG_02200 [Bacteroides eggerthii DSM 20697] Length = 298 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPS----KGLSVAFDAYVESAVKLFQMRHGL 151 + R L G V L L + ++ S K +DA + SAVK FQ GL Sbjct: 130 SIGDRTLKTGIHGSDVTSLTGYLATALYINRSWIKEKEGYSLYDATIASAVKHFQKDAGL 189 Query: 152 DPSGMVDSSTLEAM 165 +G+ D +T+ + Sbjct: 190 PQTGIADQTTINKL 203 Score = 41.0 bits (95), Expect = 0.43, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 6/71 (8%) Query: 106 NSSVSVQRLRERLIISGDLDP------SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + V L L +G + F + +AV+ FQ + L +G D Sbjct: 228 DKGTDVTELVNLLTKAGFAPDPKKIVMTNDGRTEFTKDIATAVRFFQAYNNLSVTGRADE 287 Query: 160 STLEAMNVPVD 170 +T++A+ Sbjct: 288 ATIKALKTKAQ 298 >gi|332799121|ref|YP_004460620.1| cell wall hydrolase SleB [Tepidanaerobacter sp. Re1] gi|332696856|gb|AEE91313.1| cell wall hydrolase SleB [Tepidanaerobacter sp. Re1] Length = 228 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 25/77 (32%), Gaps = 2/77 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 +L R L G V +L++ L G A+ FQ GL G Sbjct: 27 QLGDRVLTKGCRGQDVAQLQQVLNNKGFWSGYADG--ILGNKTVDALVKFQKAKGLKADG 84 Query: 156 MVDSSTLEAMNVPVDLR 172 + T A+ V R Sbjct: 85 IAGFETFSALGVDTSYR 101 >gi|298492059|ref|YP_003722236.1| peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] gi|298233977|gb|ADI65113.1| Peptidoglycan-binding domain 1 protein ['Nostoc azollae' 0708] Length = 182 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 59/135 (43%), Gaps = 10/135 (7%) Query: 40 INESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIA------FYQDILSR-G 92 I + R + ++ + + D + I +E ++Q +A Q +L+R Sbjct: 51 ITPPEFMKTDGREEANISTLAIKRDKVLAQIKQEYLSQISDKLADVHNIPTKQQLLTRYP 110 Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 + + + L G++ +SV+ ++ L+ +G + F E+A+K FQ +H L Sbjct: 111 AYGQQAMPTLLFGSAGMSVRIMQRLLVSNGY---GVRVDGIFGPLTEAAIKAFQNQHNLF 167 Query: 153 PSGMVDSSTLEAMNV 167 G+V T +++ Sbjct: 168 VDGIVGQKTWWELSI 182 >gi|114320738|ref|YP_742421.1| ErfK/YbiS/YcfS/YnhG family protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227132|gb|ABI56931.1| ErfK/YbiS/YcfS/YnhG family protein [Alkalilimnicola ehrlichii MLHE-1] Length = 329 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 46/158 (29%), Gaps = 47/158 (29%) Query: 196 VLVNIPAASLEAVE-----NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 V+VN+ L + V VGR+D +TP+ + I +P W P SI Sbjct: 104 VVVNVAEMRLYYYRPVTAGERRRVETYPVSVGRMDWETPVGRTEITAKAEDPSWYPPESI 163 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 +Y + + PG N + Sbjct: 164 ------------REYARRE----------------------QGKELPRVVPPGPDNPLGR 189 Query: 311 --TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 ++ H T P V TSGC+R+ Sbjct: 190 HALRLGIP-GYLI--HGTNRPWGIGMRV---TSGCIRM 221 >gi|147807819|emb|CAN73128.1| hypothetical protein VITISV_030256 [Vitis vinifera] Length = 305 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 103 HLGNSSVSVQRLRERLIISGDLD------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 H G+ + +L++ L G L + FD VESA+K +Q + L+ +G Sbjct: 50 HKGDKVEGIHKLKKYLGQFGYLSYSHSKYHTHANDDDFDDLVESAIKTYQTNYHLNATGS 109 Query: 157 VDSSTLEAMNVP 168 +DS T+ M P Sbjct: 110 LDSETVSQMVKP 121 >gi|29829926|ref|NP_824560.1| lipoprotein [Streptomyces avermitilis MA-4680] gi|29607036|dbj|BAC71095.1| putative lipoprotein [Streptomyces avermitilis MA-4680] Length = 285 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 5/134 (3%) Query: 98 PIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 P + L G+ +V+ L+ RL L G + +D +AV+ FQ + GL +G Sbjct: 75 PAKVLWSAGDKGTAVRELQARLRQVAWL--FDGPTGTYDDLTVTAVRGFQGKRGLPRTGE 132 Query: 157 VDSSTLEAMNVPV--DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 D+ T + + + + + M R + ++ + +L + +GK Sbjct: 133 TDAVTWQRLVRMTHEPTKWELYALGGQPAAAPDPRCMTGRALCISKTSRTLRWMIDGKTV 192 Query: 215 LRSTVIVGRVDRQT 228 V G T Sbjct: 193 STMAVRFGAQYTPT 206 >gi|291004107|ref|ZP_06562080.1| putative muramoyl-pentapeptide carboxypeptidase [Saccharopolyspora erythraea NRRL 2338] Length = 245 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 7/81 (8%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLF 145 + W R L G+S V+ L+ R+ K + F ++AV F Sbjct: 32 AAAYDW----SRELREGHSGADVRELQIRVAGWAADSAQKTHVAVDGQFGPGTKAAVVRF 87 Query: 146 QMRHGLDPSGMVDSSTLEAMN 166 Q +GL SG+VDS+T + +N Sbjct: 88 QKAYGLAGSGVVDSATQQKLN 108 >gi|134102502|ref|YP_001108163.1| putative muramoyl-pentapeptide carboxypeptidase [Saccharopolyspora erythraea NRRL 2338] gi|133915125|emb|CAM05238.1| putative muramoyl-pentapeptide carboxypeptidase [Saccharopolyspora erythraea NRRL 2338] Length = 243 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 7/81 (8%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLF 145 + W R L G+S V+ L+ R+ K + F ++AV F Sbjct: 30 AAAYDW----SRELREGHSGADVRELQIRVAGWAADSAQKTHVAVDGQFGPGTKAAVVRF 85 Query: 146 QMRHGLDPSGMVDSSTLEAMN 166 Q +GL SG+VDS+T + +N Sbjct: 86 QKAYGLAGSGVVDSATQQKLN 106 >gi|296329447|ref|ZP_06871934.1| carboxy-terminal processing protease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674771|ref|YP_003866443.1| carboxy-terminal processing protease [Bacillus subtilis subsp. spizizenii str. W23] gi|296153329|gb|EFG94191.1| carboxy-terminal processing protease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413015|gb|ADM38134.1| carboxy-terminal processing protease [Bacillus subtilis subsp. spizizenii str. W23] Length = 466 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 14/111 (12%) Query: 76 AQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 Q + + Y + P L + G+S +V+ ++ L G ++ + Sbjct: 359 PQVKAELPDYAKL------PYLDADKTYKSGDSGTNVKVAQKMLKALGY---KVKVNSTY 409 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR----QLQVNLM 181 D S VK FQ + L +G++ T + + ++ Q++ + Sbjct: 410 DQDFVSVVKQFQKKEKLKETGVLTGDTTTKLMTELQKKLSNNDTQMEKAIE 460 >gi|258511360|ref|YP_003184794.1| ErfK/YbiS/YcfS/YnhG family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478086|gb|ACV58405.1| ErfK/YbiS/YcfS/YnhG family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 300 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 18/101 (17%) Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQK 190 + + AV F+ HGL G + ++ + L L Sbjct: 124 PDQYTEITKGAVMRFEADHGLRVDGYTGPRVRRTL---------EIALAL-----HLTAT 169 Query: 191 MGLRYVLVN--IPAASLEAVENGK-VGLRSTVIVGRVDRQT 228 R V+V+ IP L E+G+ V ++ G T Sbjct: 170 QPYRLVMVDQSIP-QQLRVWEDGRGVIFQTACSTGVPAAPT 209 >gi|297192509|ref|ZP_06909907.1| lipoprotein [Streptomyces pristinaespiralis ATCC 25486] gi|197718051|gb|EDY61959.1| lipoprotein [Streptomyces pristinaespiralis ATCC 25486] Length = 282 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 64/185 (34%), Gaps = 6/185 (3%) Query: 48 VNDRFDNFLARVDMGIDSDIPIISK-ETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGN 106 D + P S + +++E A + S P + G Sbjct: 21 ATDAPSAGTPSAAPATSASTPPASPTPSASESETAEPSKKPSPSPSTQKPAPKVLMAPGA 80 Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM- 165 V+ L+ RL G D + + +AVK FQ + GL +G D+ T + + Sbjct: 81 KGEQVRELQARLAQIGWFD--DKPTGTYGPVTTTAVKGFQGKRGLLATGSTDTVTWDRLL 138 Query: 166 -NVPVDLRIRQLQVNLMRIK-KLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 R ++ + + KL + M R + ++ +L + +GKV V G Sbjct: 139 GMTTKPTRAELDGKDVKKPQAKLDPRCMTGRVMCISKTTRTLSWMIDGKVLSTMDVRFGS 198 Query: 224 VDRQT 228 T Sbjct: 199 QYTPT 203 >gi|313900439|ref|ZP_07833932.1| peptidoglycan binding domain protein [Clostridium sp. HGF2] gi|312954501|gb|EFR36176.1| peptidoglycan binding domain protein [Clostridium sp. HGF2] Length = 356 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMR 148 G W + L G+ + VQ+L+ L IIS PS + F ++ AV+ +Q Sbjct: 274 GLW---TGKVLRQGDVGIEVQQLQYFLSIISESYPSIPSVTVDSRFGPGLDRAVRAYQRE 330 Query: 149 HGLDPSGMVDSSTLEAM 165 GL G+V T ++ Sbjct: 331 FGLAVDGLVGRYTWNSI 347 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 8/87 (9%) Query: 87 DILSRGGW----PELPIRPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYV 138 L W P P L L +S V ++E L ++ F Sbjct: 163 QFLETDNWQPYTPSYPGYALRLESSGQPVFIIQELLNGIAVNYPNIPLIYPPDAVFGPQT 222 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ESAV+ FQ + L G+V ST + Sbjct: 223 ESAVRAFQRQFDLTVDGIVGQSTWYQI 249 >gi|328880762|emb|CCA54001.1| hypothetical protein SVEN_0714 [Streptomyces venezuelae ATCC 10712] Length = 130 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQM 147 S GW +P R G++ V V+ L+ + +DP+ + F + +K FQ Sbjct: 48 SANGW-LIPARNFQYGSTGVCVRELQSDVASIMGIDPADWPFVDGVFGTKTDDYIKEFQR 106 Query: 148 RHGLDPSGMVDSSTLEAM 165 +H L G+V +T EA+ Sbjct: 107 QHHLIVDGVVGPNTWEAL 124 >gi|320011044|gb|ADW05894.1| Peptidoglycan-binding domain 1 protein [Streptomyces flavogriseus ATCC 33331] Length = 329 Score = 49.1 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 6/73 (8%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLI-ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 E+ L G+S V L+ RL I P G + A VE AV +Q + Sbjct: 249 EVSGATLRRGDSGAEVAELQRRLQEIWVYRGPDNGD---YSAQVEQAVAEYQRWVSVRND 305 Query: 155 --GMVDSSTLEAM 165 G+ T A+ Sbjct: 306 PPGVYGPETRSAL 318 >gi|162449468|ref|YP_001611835.1| hypothetical protein sce1198 [Sorangium cellulosum 'So ce 56'] gi|161160050|emb|CAN91355.1| hypothetical protein predicted by Glimmer/Critica [Sorangium cellulosum 'So ce 56'] Length = 241 Score = 49.1 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + R L+ S V ++ RL G + + DA +A+K FQ H L+ +G Sbjct: 170 IAPRTLNP---SRDVDGIQARLANLGYYSGPRHGEL--DAATIAALKRFQSDHDLEATGK 224 Query: 157 VDSSTLEAM 165 D +T A+ Sbjct: 225 PDEATASAL 233 >gi|315145030|gb|EFT89046.1| peptidase [Enterococcus faecalis TX2141] Length = 480 Score = 49.1 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + L + + A ++AV Q ++GL +G +D+ Sbjct: 392 KTLKEGDQSEDIQNLNAILAVLAYLVDENNAN--YTAETKAAVSDLQQKNGLPVTGEIDN 449 Query: 160 ST 161 T Sbjct: 450 ET 451 >gi|182438957|ref|YP_001826676.1| putative peptidodoglycan-binding membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467473|dbj|BAG21993.1| putative peptidodoglycan-binding membrane protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 431 Score = 49.1 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GM 156 L G+ V L+ RL G+ L ++ V +V ++Q + G+ Sbjct: 350 SSLRPGDRGPEVAELQTRLRTVGEWLYSGPVDGSSYSDQVAHSVAIYQSYKAIQGDPIGV 409 Query: 157 VDSSTLEAM 165 +T A+ Sbjct: 410 YGPNTRRAL 418 >gi|117619176|ref|YP_858054.1| LysM domain-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560583|gb|ABK37531.1| LysM domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 344 Score = 49.1 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 57/205 (27%), Gaps = 49/205 (23%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRS-TVIVGRVDRQTPI-LHSRINRIMFNPYWVI 246 +++N+ L GK + + +G++ TP + + R P W Sbjct: 131 PDAPREGIVLNVAEMRLYYYPKGKKVVEVLPIGIGQLGTDTPENWVTSVQRKKAGPTWT- 189 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 + +Y + G N Sbjct: 190 ----------PTAKMHAEYAAR------------------------GESLPAVWPAGPDN 215 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 M + H T F +R + GCVR+RN D +L K P +R Sbjct: 216 PMGLFALYIGKMYAI--HGTNAQ--FGIGLR-VSHGCVRLRN--DDIEYLFKKVPVGTRV 268 Query: 367 H-----IEEVVKTRKTTPVKLATEV 386 I+ V+ +++ + Sbjct: 269 QFVNQPIKASVEPDGRRYLEVHQPL 293 >gi|111224313|ref|YP_715107.1| hypothetical protein FRAAL4924 [Frankia alni ACN14a] gi|111151845|emb|CAJ63565.1| hypothetical protein; Putative peptidoglycan binding domain [Frankia alni ACN14a] Length = 200 Score = 49.1 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 VQ+++++L G G F VK +Q++HGL G+V T ++ + Sbjct: 146 DVQQIQQKLANLGYPIQVDG---QFGYQTNHMVKDYQLKHGLLVDGVVGPQTRASLGI 200 >gi|319650587|ref|ZP_08004727.1| carboxyl-terminal processing protease [Bacillus sp. 2_A_57_CT2] gi|317397768|gb|EFV78466.1| carboxyl-terminal processing protease [Bacillus sp. 2_A_57_CT2] Length = 474 Score = 49.1 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +PL + ++ V+ +E L G F+ +AVK FQ + L+ SG +D Sbjct: 385 KPLAIDMNNEMVKNAQEILAGLGYAPG--RTDGYFNDSTAAAVKAFQKQKELEASGRIDK 442 Query: 160 STLEAM 165 T A+ Sbjct: 443 KTAAAL 448 >gi|291447220|ref|ZP_06586610.1| lipoprotein [Streptomyces roseosporus NRRL 15998] gi|291350167|gb|EFE77071.1| lipoprotein [Streptomyces roseosporus NRRL 15998] Length = 295 Score = 49.1 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 8/131 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G+ S V+ L+ RL G + + + + AV+ FQ + L +G D T Sbjct: 90 MRTGSESDRVRELQARLRQIGHF--GRTPTGYYGSVTADAVRSFQAKRSLPVTGSTDEVT 147 Query: 162 ---LEAMNVPVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVENGKVGLRS 217 L AM +L+ R +++ + R + ++ + +L + +GKV Sbjct: 148 WQRLRAMTRVPT--AAELRPPTERPVAAPDERCLKGRVLCISKNSRTLAWMIDGKVVSAM 205 Query: 218 TVIVGRVDRQT 228 V G T Sbjct: 206 DVRFGSDYTPT 216 >gi|323438436|gb|EGA96190.1| carboxy-terminal processing proteinase [Staphylococcus aureus O11] gi|323444074|gb|EGB01685.1| carboxy-terminal processing proteinase [Staphylococcus aureus O46] Length = 496 Score = 49.1 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G + FD +E+ +K FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSALGY--KVDNETTQFDQALENQIKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|163853780|ref|YP_001641823.1| peptidoglycan binding domain-containing protein [Methylobacterium extorquens PA1] gi|163665385|gb|ABY32752.1| Peptidoglycan-binding domain 1 protein [Methylobacterium extorquens PA1] Length = 233 Score = 49.1 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 19/55 (34%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V ++ L+ G G +AV FQ GL G+ T A+ Sbjct: 4 VADIQRALLARGYDLGKAGADGDAGPRTIAAVTAFQRSAGLVADGIAGPKTQAAL 58 >gi|239990210|ref|ZP_04710874.1| hypothetical protein SrosN1_23088 [Streptomyces roseosporus NRRL 11379] Length = 350 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 8/131 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G+ S V+ L+ RL G + + + + AV+ FQ + L +G D T Sbjct: 145 MRTGSESDRVRELQARLRQIGHF--GRTPTGYYGSVTADAVRSFQAKRSLPVTGSTDEVT 202 Query: 162 ---LEAMNVPVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVENGKVGLRS 217 L AM +L+ R +++ + R + ++ + +L + +GKV Sbjct: 203 WQRLRAMTRVPT--AAELRPPTERPVAAPDERCLKGRVLCISKNSRTLAWMIDGKVVSAM 260 Query: 218 TVIVGRVDRQT 228 V G T Sbjct: 261 DVRFGSDYTPT 271 >gi|331271040|ref|YP_004385751.1| putative N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum BKT015925] gi|329127432|gb|AEB77376.1| putative N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum BKT015925] Length = 304 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 2/75 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L +G+ V++L+ L G + F ++AV FQ + L G+V Sbjct: 168 SSGLLKIGSKEDKVKQLQANLNKLGYTCGNADG--IFGQETKNAVISFQRNNELSADGIV 225 Query: 158 DSSTLEAMNVPVDLR 172 ST + ++ R Sbjct: 226 GQSTWNKILSNLEDR 240 >gi|253573587|ref|ZP_04850930.1| spore cortex-lytic enzyme [Paenibacillus sp. oral taxon 786 str. D14] gi|251847115|gb|EES75120.1| spore cortex-lytic enzyme [Paenibacillus sp. oral taxon 786 str. D14] Length = 277 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 2/67 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + + G V L+ RL G L F A+K FQ G+ Sbjct: 42 PAFSEQVIDYGAYGKDVYELQGRLAYLGFYHG--KLDSYFGPKTLGALKWFQSEFGMKVD 99 Query: 155 GMVDSST 161 G+ T Sbjct: 100 GLAGPKT 106 >gi|126729787|ref|ZP_01745600.1| hypothetical protein SSE37_04915 [Sagittula stellata E-37] gi|126709906|gb|EBA08959.1| hypothetical protein SSE37_04915 [Sagittula stellata E-37] Length = 335 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 2/76 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V+ L+E L + FD +A+ FQ +GL + + T Sbjct: 175 LRFGDRGADVRVLQEDLAGLRYFAGRRDG--RFDTLTRAALLAFQADNGLATDAVAGALT 232 Query: 162 LEAMNVPVDLRIRQLQ 177 A+ +R + Sbjct: 233 WAALARAQPRPLRDIA 248 >gi|172056176|ref|YP_001812636.1| peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Exiguobacterium sibiricum 255-15] gi|171988697|gb|ACB59619.1| peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Exiguobacterium sibiricum 255-15] Length = 210 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 18/38 (47%) Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ FDA V+ +Q R GL G+V +T M Sbjct: 172 ATVTKRFDAETAEKVRAYQKRQGLTVDGVVGPATWNRM 209 >gi|315287491|gb|EFU46902.1| LysM domain protein [Escherichia coli MS 110-3] Length = 307 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|325912856|ref|ZP_08175234.1| peptidase, S41 family [Lactobacillus iners UPII 60-B] gi|325477849|gb|EGC80983.1| peptidase, S41 family [Lactobacillus iners UPII 60-B] Length = 460 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L S L+ +D ++VK+FQ + L +G+V+ Sbjct: 376 LKYNMMGLDIAILQKYLMALGYL--SNNLTGVYDNATLNSVKMFQKDNNLKVTGIVNKDI 433 Query: 162 LEAM 165 A+ Sbjct: 434 RYAL 437 >gi|312873993|ref|ZP_07734029.1| peptidase, S41 family [Lactobacillus iners LEAF 2052A-d] gi|311090542|gb|EFQ48950.1| peptidase, S41 family [Lactobacillus iners LEAF 2052A-d] Length = 460 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L S L+ +D ++VK+FQ + L +G+V+ Sbjct: 376 LKYNMMGLDIAILQKYLMALGYL--SNNLTGVYDNATLNSVKMFQKDNNLKVTGIVNKDI 433 Query: 162 LEAM 165 A+ Sbjct: 434 RYAL 437 >gi|312875468|ref|ZP_07735471.1| peptidase, S41 family [Lactobacillus iners LEAF 2053A-b] gi|311088979|gb|EFQ47420.1| peptidase, S41 family [Lactobacillus iners LEAF 2053A-b] Length = 460 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L S L+ +D ++VK+FQ + L +G+V+ Sbjct: 376 LKYNMMGLDIAILQKYLMALGYL--SNNLTGVYDNATLNSVKMFQKDNNLKVTGIVNKDI 433 Query: 162 LEAM 165 A+ Sbjct: 434 RYAL 437 >gi|309804179|ref|ZP_07698257.1| peptidase, S41 family [Lactobacillus iners LactinV 11V1-d] gi|309809279|ref|ZP_07703148.1| peptidase, S41 family [Lactobacillus iners SPIN 2503V10-D] gi|329921343|ref|ZP_08277781.1| peptidase, S41 family [Lactobacillus iners SPIN 1401G] gi|308163762|gb|EFO66031.1| peptidase, S41 family [Lactobacillus iners LactinV 11V1-d] gi|308170392|gb|EFO72416.1| peptidase, S41 family [Lactobacillus iners SPIN 2503V10-D] gi|328934635|gb|EGG31139.1| peptidase, S41 family [Lactobacillus iners SPIN 1401G] Length = 460 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L S L+ +D ++VK+FQ + L +G+V+ Sbjct: 376 LKYNMMGLDIAILQKYLMALGYL--SNNLTGVYDNATLNSVKMFQKDNNLKVTGIVNKDI 433 Query: 162 LEAM 165 A+ Sbjct: 434 RYAL 437 >gi|259500647|ref|ZP_05743549.1| carboxy-terminal processing protease CtpA [Lactobacillus iners DSM 13335] gi|302191336|ref|ZP_07267590.1| hypothetical protein LineA_04932 [Lactobacillus iners AB-1] gi|259168031|gb|EEW52526.1| carboxy-terminal processing protease CtpA [Lactobacillus iners DSM 13335] Length = 460 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L S L+ +D ++VK+FQ + L +G+V+ Sbjct: 376 LKYNMMGLDIAILQKYLMALGYL--SNNLTGVYDNATLNSVKMFQKDNNLKVTGIVNKDI 433 Query: 162 LEAM 165 A+ Sbjct: 434 RYAL 437 >gi|256395379|ref|YP_003116943.1| NLP/P60 protein [Catenulispora acidiphila DSM 44928] gi|256361605|gb|ACU75102.1| NLP/P60 protein [Catenulispora acidiphila DSM 44928] Length = 285 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 3/66 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L++ L G + F +AVK +Q H L G+V T Sbjct: 50 ISYGQKSGCVTELQQLLNKHG---AHLAVDGDFGPATRAAVKSYQSSHKLSVDGIVGPKT 106 Query: 162 LEAMNV 167 +++ Sbjct: 107 KASLDG 112 >gi|20808962|ref|NP_624133.1| periplasmic protease [Thermoanaerobacter tengcongensis MB4] gi|20517627|gb|AAM25737.1| Periplasmic protease [Thermoanaerobacter tengcongensis MB4] Length = 453 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 61/180 (33%), Gaps = 35/180 (19%) Query: 3 GYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMG 62 YL K V ++ I + + ++ E+ + Sbjct: 268 SYLTKPKYKLAVLVNKGTASAAEILAGAIQDTKVGFLVGENTYG-------------KGT 314 Query: 63 IDSDIPIISKETIAQTEKAIAFY-----QDILSRGGWPELPIR------------PLHLG 105 + S +P+ T IA Y + I G P++ ++ L +G Sbjct: 315 VQSVVPLEDGSGFKLT---IARYKLPSGRYIGKEGLTPDVYVKNVQYTADIKFGGELKIG 371 Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + V+ L++ L + + F +AVK Q + GL P+G+ D +T A+ Sbjct: 372 SRGNEVKILQKYLNLLKF--NAGPEDGIFGPKTANAVKELQKKAGLSPTGVFDKNTYNAL 429 >gi|308232610|ref|ZP_07416616.2| hydrolase [Mycobacterium tuberculosis SUMu001] gi|308371501|ref|ZP_07425158.2| hydrolase [Mycobacterium tuberculosis SUMu003] gi|308371550|ref|ZP_07425287.2| hydrolase [Mycobacterium tuberculosis SUMu004] gi|308375032|ref|ZP_07442437.2| hydrolase [Mycobacterium tuberculosis SUMu007] gi|308376280|ref|ZP_07438228.2| hydrolase [Mycobacterium tuberculosis SUMu008] gi|308378515|ref|ZP_07482827.2| hydrolase [Mycobacterium tuberculosis SUMu009] gi|308379665|ref|ZP_07487059.2| hydrolase [Mycobacterium tuberculosis SUMu010] gi|308380864|ref|ZP_07491276.2| hydrolase [Mycobacterium tuberculosis SUMu011] gi|308213429|gb|EFO72828.1| hydrolase [Mycobacterium tuberculosis SUMu001] gi|308328608|gb|EFP17459.1| hydrolase [Mycobacterium tuberculosis SUMu003] gi|308336263|gb|EFP25114.1| hydrolase [Mycobacterium tuberculosis SUMu004] gi|308347665|gb|EFP36516.1| hydrolase [Mycobacterium tuberculosis SUMu007] gi|308351583|gb|EFP40434.1| hydrolase [Mycobacterium tuberculosis SUMu008] gi|308352290|gb|EFP41141.1| hydrolase [Mycobacterium tuberculosis SUMu009] gi|308356293|gb|EFP45144.1| hydrolase [Mycobacterium tuberculosis SUMu010] gi|308360180|gb|EFP49031.1| hydrolase [Mycobacterium tuberculosis SUMu011] Length = 324 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V L+ RL G + F +A+ +Q +GL G+ TL ++ Sbjct: 23 GDDVATLQARLQDLGFYTG--LVDGHFGLQTHNALMSYQREYGLAADGICGPETLRSL 78 >gi|302519494|ref|ZP_07271836.1| lipoprotein [Streptomyces sp. SPB78] gi|318081632|ref|ZP_07988946.1| hypothetical protein SSA3_34132 [Streptomyces sp. SA3_actF] gi|302428389|gb|EFL00205.1| lipoprotein [Streptomyces sp. SPB78] Length = 196 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 14/123 (11%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM--NVPVD 170 L+ RL G + F A+ FQ GL SG++D++T + P Sbjct: 3 ALQARLWSLGFFRQQP--TGFFGDVTAQALAAFQRDRGLGASGVLDAATWARLRAAGPAP 60 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRYVL-----VNIPAASLEAVENGKVGLRSTVIVGRVD 225 + L L + R + V+ + +L + +G+V V G Sbjct: 61 TKA-----ALYPETTLPPTRPDPRCLTGRALCVSKKSRTLAWMVDGRVVSVMDVRFGSAY 115 Query: 226 RQT 228 T Sbjct: 116 TPT 118 >gi|326804586|ref|YP_004327457.1| phage-encoded peptidoglycan binding protein [Salmonella phage Vi01] gi|301795236|emb|CBW37954.1| phage-encoded peptidoglycan binding protein [Salmonella phage Vi01] Length = 264 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LGN V+ L++ L G S F E+AVK Q GL G+ T Sbjct: 4 LKLGNRGSEVKSLQQSLNKIGF---SLVADGIFGKATENAVKSVQAGAGLVIDGIAGPKT 60 Query: 162 LEAM 165 A+ Sbjct: 61 FYAI 64 >gi|260425195|ref|ZP_05734487.2| ErfK/YbiS/YcfS/YnhG family protein [Dialister invisus DSM 15470] gi|260404459|gb|EEW98006.1| ErfK/YbiS/YcfS/YnhG family protein [Dialister invisus DSM 15470] Length = 351 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 66/229 (28%), Gaps = 80/229 (34%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 + +N+ + L E + V VG + +P+ I+ NP W P++ K Sbjct: 59 ITLNLASRLLTLYEGTEKVRIYPVAVGAPETPSPVGEFSISEKEVNPVWTDPKT---KTT 115 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + G N + + Sbjct: 116 VP--------------------------------------------SGPSNPLGYRWLGL 131 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 Y H T P ++ R + GC+R+ +EE+ ++ Sbjct: 132 YGNYGI--HGTNAPW---SIGRSVSHGCIRMY-----------------EEDVEELFES- 168 Query: 376 KTTPVKLATEVPVHFVYISAWSPK--DSIIQF--RDDIYGLDNVHVGII 420 V + T PV +Y + D + + D YG + + V + Sbjct: 169 ----VPMGT--PVEIIYDRVIMEEAPDHTVSYYIYPDGYGWEPLTVSSV 211 >gi|320664513|gb|EFX31664.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. LSU-61] Length = 319 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|315653518|ref|ZP_07906439.1| carboxy-terminal processing protease CtpA [Lactobacillus iners ATCC 55195] gi|315489209|gb|EFU78850.1| carboxy-terminal processing protease CtpA [Lactobacillus iners ATCC 55195] Length = 460 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L S L+ +D ++VK+FQ + L +G+V+ Sbjct: 376 LKYNMMGLDIAILQKYLMALGYL--SNNLTGVYDNATLNSVKMFQKDNNLKVTGIVNKDI 433 Query: 162 LEAM 165 A+ Sbjct: 434 RYAL 437 >gi|239943759|ref|ZP_04695696.1| hypothetical protein SrosN15_22371 [Streptomyces roseosporus NRRL 15998] Length = 321 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 8/131 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G+ S V+ L+ RL G + + + + AV+ FQ + L +G D T Sbjct: 116 MRTGSESDRVRELQARLRQIGHF--GRTPTGYYGSVTADAVRSFQAKRSLPVTGSTDEVT 173 Query: 162 ---LEAMNVPVDLRIRQLQVNLMRIKKLLEQK-MGLRYVLVNIPAASLEAVENGKVGLRS 217 L AM +L+ R +++ + R + ++ + +L + +GKV Sbjct: 174 WQRLRAMTRVPT--AAELRPPTERPVAAPDERCLKGRVLCISKNSRTLAWMIDGKVVSAM 231 Query: 218 TVIVGRVDRQT 228 V G T Sbjct: 232 DVRFGSDYTPT 242 >gi|149911553|ref|ZP_01900167.1| hypothetical protein PE36_11747 [Moritella sp. PE36] gi|149805398|gb|EDM65408.1| hypothetical protein PE36_11747 [Moritella sp. PE36] Length = 287 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 65/173 (37%), Gaps = 41/173 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + + +++N+P L +N V +GR R+TP ++S + + +P W Sbjct: 74 MLLPDVEHKGIVINLPELRLYYFPKNSNKVHVFPVGIGREGRETPQMNSFVKTKLKDPVW 133 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 + + + YL + + Q GK Sbjct: 134 TPTPT-TRAE----------YLDKYKMVLP----------------------RIVQ-AGK 159 Query: 305 INAMASTKIEF-YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWL 356 N + S ++ Y + N +H T F +R ++GC+R+ N D+ WL Sbjct: 160 HNPLGSFALQLAYGKRNYLIHGTNTD--FGIGMR-ISAGCIRM-NPDDI-EWL 207 >gi|319892421|ref|YP_004149296.1| Probable carboxy-terminal processing proteinase ctpA [Staphylococcus pseudintermedius HKU10-03] gi|317162117|gb|ADV05660.1| Probable carboxy-terminal processing proteinase ctpA [Staphylococcus pseudintermedius HKU10-03] Length = 509 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 13/92 (14%) Query: 83 AFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 A Y++I +P + H G V+ ++ L G + ++A + A Sbjct: 410 ADYENI------SVIPTKTTYHQGQEDKHVKSIKIGLKALGY--DVGTIDEHYNAQLTIA 461 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 VK FQ ++ L +GM + T N R+ Sbjct: 462 VKQFQQKNDLTANGMFNKET----NGVFTERL 489 >gi|261339562|ref|ZP_05967420.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cancerogenus ATCC 35316] gi|288318379|gb|EFC57317.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cancerogenus ATCC 35316] Length = 337 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 56/172 (32%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLR-STVIVGRVDRQTPILHSRINRIMFNPYW 244 +L ++VN+ L G+ + + +G++ +TP+ +R+++ + NP W Sbjct: 89 MLLPDTPREGIVVNLAELRLYYFPPGENRVEVYPLGIGQLGLETPVSTTRVSQKIPNPTW 148 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I + + I + G Sbjct: 149 TPTAGIRARSL------------AQGIKL-----------------------PPVVPAGP 173 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P N+V +SGC+R+ ++ Sbjct: 174 NNPLGRFALRLGIGNGEYLIHGTSAP---NSVGLRVSSGCMRMNAPDIKALF 222 >gi|218528353|ref|YP_002419169.1| peptidoglycan-binding protein [Methylobacterium chloromethanicum CM4] gi|218520656|gb|ACK81241.1| Peptidoglycan-binding domain 1 protein [Methylobacterium chloromethanicum CM4] Length = 232 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%) Query: 111 VQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V ++ L+ G DL PS A +AV FQ GL G+ T A+ Sbjct: 3 VAEIQRALLARGYDLGPSGADGDA-GPRTIAAVTAFQYSAGLVADGIAGPRTQAAL 57 >gi|325836775|ref|ZP_08166242.1| peptidase, S41 family [Turicibacter sp. HGF1] gi|325491153|gb|EGC93442.1| peptidase, S41 family [Turicibacter sp. HGF1] Length = 475 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 15/104 (14%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 +YQ L+ G + L S+ + L G +D SAV+ Sbjct: 376 YYQVYLTDG-------KSLEYDMVDSSIANAQNILTALGY--QVGRHDGYYDKSTVSAVE 426 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR------QLQVNLM 181 FQ + + +G++D+ T + + + ++R QLQ L Sbjct: 427 NFQADNEILVTGIIDNKTASELTLALRNKVRDKQYDTQLQTALE 470 >gi|325911993|ref|ZP_08174395.1| peptidase, S41 family [Lactobacillus iners UPII 143-D] gi|325476178|gb|EGC79342.1| peptidase, S41 family [Lactobacillus iners UPII 143-D] Length = 460 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L S L+ +D ++VK+FQ + L +G+V+ Sbjct: 376 LKYNMMGLDIAILQKYLMALGYL--SNNLTGVYDNATLNSVKMFQKDNNLKVTGIVNKDI 433 Query: 162 LEAM 165 A+ Sbjct: 434 RYAL 437 >gi|293375596|ref|ZP_06621870.1| peptidase, S41 family [Turicibacter sanguinis PC909] gi|292645813|gb|EFF63849.1| peptidase, S41 family [Turicibacter sanguinis PC909] Length = 475 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 15/104 (14%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 +YQ L+ G + L S+ + L G +D SAV+ Sbjct: 376 YYQVYLTDG-------KSLEYDMVDSSIANAQNILTALGY--QVGRHDGYYDKSTVSAVE 426 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR------QLQVNLM 181 FQ + + +G++D+ T + + + ++R QLQ L Sbjct: 427 NFQADNEILVTGIIDNKTASELTLALRNKVRDKQYDTQLQTALE 470 >gi|326391572|ref|ZP_08213103.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus JW 200] gi|325992402|gb|EGD50863.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus JW 200] Length = 229 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 95 PELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P P P+ G+ +V V ++ L +G L + + F ++AV FQ H L P Sbjct: 155 PGSPYYPIVQYGSQNVYVATCQDALYYNGYLTLTD-IDGIFGDITKNAVIKFQKDHNLTP 213 Query: 154 SGMVDSSTLEAM 165 G+V S T A+ Sbjct: 214 DGIVGSQTWSAL 225 >gi|290968167|ref|ZP_06559712.1| ErfK/YbiS/YcfS/YnhG [Megasphaera genomosp. type_1 str. 28L] gi|290781842|gb|EFD94425.1| ErfK/YbiS/YcfS/YnhG [Megasphaera genomosp. type_1 str. 28L] Length = 340 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 43/154 (27%), Gaps = 51/154 (33%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 + +N+ + L ENG+ V VG TP I NP W Sbjct: 43 TRIAINLASRILTLYENGQKAAIYAVGVGTRRTPTPTGRFVIQNKAVNPTW--------- 93 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 P N R PG N + + Sbjct: 94 -------------------------------------VNPQNTQMRIGPGPNNPVGKRWM 116 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 FY H T P +V ++ + GCVR++ Sbjct: 117 GFYGSYGI--HGTNHP---ESVGKYVSHGCVRMK 145 >gi|295398972|ref|ZP_06808954.1| spore cortex-lytic enzyme [Geobacillus thermoglucosidasius C56-YS93] gi|312110421|ref|YP_003988737.1| spore cortex-lytic enzyme [Geobacillus sp. Y4.1MC1] gi|294978438|gb|EFG54034.1| spore cortex-lytic enzyme [Geobacillus thermoglucosidasius C56-YS93] gi|311215522|gb|ADP74126.1| spore cortex-lytic enzyme [Geobacillus sp. Y4.1MC1] Length = 275 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 7/82 (8%) Query: 89 LSRGGWPELPIRP-----LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 L+ GG P ++ + G V L+ RL G + + F AV+ Sbjct: 22 LAIGGKPAEEVKAFSNQVIQRGAVGDDVIELQARLQYIGFYNG--KIDGVFGWRTYWAVR 79 Query: 144 LFQMRHGLDPSGMVDSSTLEAM 165 FQ +GL G+V ST + Sbjct: 80 NFQYEYGLPVDGLVGESTKAKL 101 >gi|302874407|ref|YP_003843040.1| SpoIID/LytB domain-containing protein [Clostridium cellulovorans 743B] gi|307690988|ref|ZP_07633434.1| SpoIID/LytB domain-containing protein [Clostridium cellulovorans 743B] gi|302577264|gb|ADL51276.1| SpoIID/LytB domain protein [Clostridium cellulovorans 743B] Length = 856 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 2/70 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + P+ G V ++ L G + + + SAV FQ L +G Sbjct: 775 VSTLPISYGMRGTDVATIQSGLTTLGYSPGV--IDGIYGSKTYSAVINFQKSVSLKATGS 832 Query: 157 VDSSTLEAMN 166 VD +T AMN Sbjct: 833 VDVTTFNAMN 842 >gi|309807519|ref|ZP_07701476.1| peptidase, S41 family [Lactobacillus iners LactinV 01V1-a] gi|308169246|gb|EFO71307.1| peptidase, S41 family [Lactobacillus iners LactinV 01V1-a] Length = 431 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L S L+ +D ++VK+FQ + L +G+V+ Sbjct: 347 LKYNMMGLDIAILQKYLMALGYL--SNNLTGVYDNATLNSVKMFQKDNNLKVTGIVNKDI 404 Query: 162 LEAM 165 A+ Sbjct: 405 RYAL 408 >gi|309805739|ref|ZP_07699779.1| peptidase, S41 family [Lactobacillus iners LactinV 09V1-c] gi|308164992|gb|EFO67235.1| peptidase, S41 family [Lactobacillus iners LactinV 09V1-c] Length = 399 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L S L+ +D ++VK+FQ + L +G+V+ Sbjct: 315 LKYNMMGLDIAILQKYLMALGYL--SNNLTGVYDNATLNSVKMFQKDNNLKVTGIVNKDI 372 Query: 162 LEAM 165 A+ Sbjct: 373 RYAL 376 >gi|295696385|ref|YP_003589623.1| spore cortex-lytic enzyme [Bacillus tusciae DSM 2912] gi|295411987|gb|ADG06479.1| spore cortex-lytic enzyme [Bacillus tusciae DSM 2912] Length = 241 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 3/72 (4%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W + + L G V L++RL G + + F +V+ FQ HGL Sbjct: 32 W-AMSDKTLMKGGRGEDVYELQDRLKFLGLYRGA--IDGVFGWNTYWSVRSFQSGHGLSA 88 Query: 154 SGMVDSSTLEAM 165 +G VD T A+ Sbjct: 89 TGQVDDRTRRAL 100 >gi|329571926|gb|EGG53604.1| peptidase, S41 family [Enterococcus faecalis TX1467] Length = 484 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 389 KTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 446 Query: 160 ST 161 T Sbjct: 447 ET 448 >gi|315162340|gb|EFU06357.1| peptidase [Enterococcus faecalis TX0645] Length = 477 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 389 KTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 446 Query: 160 ST 161 T Sbjct: 447 ET 448 >gi|312971249|ref|ZP_07785427.1| lysM domain protein [Escherichia coli 1827-70] gi|310336451|gb|EFQ01637.1| lysM domain protein [Escherichia coli 1827-70] Length = 377 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 149 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 207 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 208 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 232 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 233 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 279 >gi|309806746|ref|ZP_07700740.1| peptidase, S41 family [Lactobacillus iners LactinV 03V1-b] gi|308166861|gb|EFO69046.1| peptidase, S41 family [Lactobacillus iners LactinV 03V1-b] Length = 431 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L S L+ +D ++VK+FQ + L +G+V+ Sbjct: 347 LKYNMMGLDIAILQKYLMALGYL--SNNLTGVYDNATLNSVKMFQKDNNLKVTGIVNKDI 404 Query: 162 LEAM 165 A+ Sbjct: 405 RYAL 408 >gi|295113069|emb|CBL31706.1| C-terminal peptidase (prc) [Enterococcus sp. 7L76] Length = 477 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 389 KTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 446 Query: 160 ST 161 T Sbjct: 447 ET 448 >gi|294781608|ref|ZP_06746944.1| peptidase, S41 family [Enterococcus faecalis PC1.1] gi|294451304|gb|EFG19770.1| peptidase, S41 family [Enterococcus faecalis PC1.1] Length = 477 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 389 KTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 446 Query: 160 ST 161 T Sbjct: 447 ET 448 >gi|289665239|ref|ZP_06486820.1| hypothetical protein XcampvN_19755 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 212 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +L + L + G F A + AV+ FQ HGL G+V T A+ Sbjct: 7 QLAQ-LGVVGRDGKPLHADGDFGANTKYAVEQFQREHGLHVDGVVGRQTQAAL 58 >gi|257419406|ref|ZP_05596400.1| predicted protein [Enterococcus faecalis T11] gi|257161234|gb|EEU91194.1| predicted protein [Enterococcus faecalis T11] Length = 480 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 392 KTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 449 Query: 160 ST 161 T Sbjct: 450 ET 451 >gi|257416201|ref|ZP_05593195.1| carboxyl-terminal protease [Enterococcus faecalis AR01/DG] gi|257158029|gb|EEU87989.1| carboxyl-terminal protease [Enterococcus faecalis ARO1/DG] Length = 480 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 392 KTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 449 Query: 160 ST 161 T Sbjct: 450 ET 451 >gi|257086967|ref|ZP_05581328.1| carboxyl-terminal protease [Enterococcus faecalis D6] gi|256994997|gb|EEU82299.1| carboxyl-terminal protease [Enterococcus faecalis D6] gi|315027837|gb|EFT39769.1| peptidase [Enterococcus faecalis TX2137] gi|315172408|gb|EFU16425.1| peptidase [Enterococcus faecalis TX1346] Length = 480 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 392 KTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 449 Query: 160 ST 161 T Sbjct: 450 ET 451 >gi|257085074|ref|ZP_05579435.1| carboxyl-terminal protease [Enterococcus faecalis Fly1] gi|256993104|gb|EEU80406.1| carboxyl-terminal protease [Enterococcus faecalis Fly1] Length = 477 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 389 KTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 446 Query: 160 ST 161 T Sbjct: 447 ET 448 >gi|256959090|ref|ZP_05563261.1| carboxyl-terminal protease [Enterococcus faecalis DS5] gi|257079121|ref|ZP_05573482.1| carboxyl-terminal protease [Enterococcus faecalis JH1] gi|307269492|ref|ZP_07550831.1| peptidase [Enterococcus faecalis TX4248] gi|256949586|gb|EEU66218.1| carboxyl-terminal protease [Enterococcus faecalis DS5] gi|256987151|gb|EEU74453.1| carboxyl-terminal protease [Enterococcus faecalis JH1] gi|306514112|gb|EFM82688.1| peptidase [Enterococcus faecalis TX4248] gi|315037093|gb|EFT49025.1| peptidase [Enterococcus faecalis TX0027] gi|315147375|gb|EFT91391.1| peptidase [Enterococcus faecalis TX4244] gi|327535245|gb|AEA94079.1| S41A family carboxy-terminal peptidase [Enterococcus faecalis OG1RF] Length = 480 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 392 KTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 449 Query: 160 ST 161 T Sbjct: 450 ET 451 >gi|256762610|ref|ZP_05503190.1| carboxyl-terminal protease [Enterococcus faecalis T3] gi|257422502|ref|ZP_05599492.1| carboxyl-terminal protease [Enterococcus faecalis X98] gi|256683861|gb|EEU23556.1| carboxyl-terminal protease [Enterococcus faecalis T3] gi|257164326|gb|EEU94286.1| carboxyl-terminal protease [Enterococcus faecalis X98] gi|315156169|gb|EFU00186.1| peptidase [Enterococcus faecalis TX0043] Length = 480 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 392 KTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 449 Query: 160 ST 161 T Sbjct: 450 ET 451 >gi|255972683|ref|ZP_05423269.1| predicted protein [Enterococcus faecalis T1] gi|255963701|gb|EET96177.1| predicted protein [Enterococcus faecalis T1] Length = 480 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 392 KTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 449 Query: 160 ST 161 T Sbjct: 450 ET 451 >gi|229549899|ref|ZP_04438624.1| S41A family carboxy-terminal peptidase [Enterococcus faecalis ATCC 29200] gi|256961817|ref|ZP_05565988.1| carboxyl-terminal protease [Enterococcus faecalis Merz96] gi|293389633|ref|ZP_06634088.1| carboxyl- protease [Enterococcus faecalis S613] gi|307289219|ref|ZP_07569175.1| peptidase [Enterococcus faecalis TX0109] gi|312907649|ref|ZP_07766640.1| peptidase [Enterococcus faecalis DAPTO 512] gi|312910266|ref|ZP_07769113.1| C-terminal processing peptidase [Enterococcus faecalis DAPTO 516] gi|312951611|ref|ZP_07770506.1| peptidase [Enterococcus faecalis TX0102] gi|229304972|gb|EEN70968.1| S41A family carboxy-terminal peptidase [Enterococcus faecalis ATCC 29200] gi|256952313|gb|EEU68945.1| carboxyl-terminal protease [Enterococcus faecalis Merz96] gi|291081026|gb|EFE17989.1| carboxyl- protease [Enterococcus faecalis S613] gi|306499928|gb|EFM69289.1| peptidase [Enterococcus faecalis TX0109] gi|310626677|gb|EFQ09960.1| peptidase [Enterococcus faecalis DAPTO 512] gi|310630328|gb|EFQ13611.1| peptidase [Enterococcus faecalis TX0102] gi|311289539|gb|EFQ68095.1| C-terminal processing peptidase [Enterococcus faecalis DAPTO 516] gi|315152368|gb|EFT96384.1| peptidase [Enterococcus faecalis TX0031] gi|315158189|gb|EFU02206.1| peptidase [Enterococcus faecalis TX0312] gi|315164128|gb|EFU08145.1| peptidase [Enterococcus faecalis TX1302] Length = 480 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 392 KTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 449 Query: 160 ST 161 T Sbjct: 450 ET 451 >gi|227518870|ref|ZP_03948919.1| S41A family carboxy-terminal peptidase [Enterococcus faecalis TX0104] gi|227073661|gb|EEI11624.1| S41A family carboxy-terminal peptidase [Enterococcus faecalis TX0104] Length = 480 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 392 KTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 449 Query: 160 ST 161 T Sbjct: 450 ET 451 >gi|157159394|ref|YP_001462346.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E24377A] gi|157081424|gb|ABV21132.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E24377A] Length = 320 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 92 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 151 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 175 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 176 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|29376233|ref|NP_815387.1| carboxyl-terminal protease [Enterococcus faecalis V583] gi|293382880|ref|ZP_06628798.1| carboxyl- protease [Enterococcus faecalis R712] gi|29343696|gb|AAO81457.1| carboxyl-terminal protease [Enterococcus faecalis V583] gi|291079545|gb|EFE16909.1| carboxyl- protease [Enterococcus faecalis R712] gi|315576110|gb|EFU88301.1| peptidase [Enterococcus faecalis TX0309B] gi|315580684|gb|EFU92875.1| peptidase [Enterococcus faecalis TX0309A] gi|323480840|gb|ADX80279.1| carboxy-terminal processing proteinase [Enterococcus faecalis 62] Length = 477 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 389 KTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 446 Query: 160 ST 161 T Sbjct: 447 ET 448 >gi|114330477|ref|YP_746699.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas eutropha C91] gi|114307491|gb|ABI58734.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas eutropha C91] Length = 323 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 76/218 (34%), Gaps = 60/218 (27%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVEN---GK--VGLRSTVIVGRVDRQTPILHSRINR 237 ++ ++ Q +++N+P L G+ + V +GR+D TP+ + I R Sbjct: 91 LRFIIPQA-ERTGLVINLPEMRLYYFPKPIKGQKPEIITHPVSIGRMDWNTPLGKTTIVR 149 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 +P W P+S+ +K+ + E+G+ ++ V Sbjct: 150 KQKDPTWTPPQSL-RKEAI-------------------EEGRPPLLDVV----------- 178 Query: 298 FRQDPGKINAMASTKIEFYSRNNTY-------MHDTPEPILFNNVVRFETSGCVRV--RN 348 G N + + Y +H T +P +R T GC+R+ + Sbjct: 179 ---PAGPDNPLG--------KYALYLGLPGYLIHGTNKP--LGVGMR-VTHGCMRLYPED 224 Query: 349 IIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEV 386 I +L + TP ++ ++L + Sbjct: 225 IEELFNLIPTGTPVQIVNQPIKLGWQGDLLYIELHPPL 262 >gi|301328513|ref|ZP_07221579.1| LysM domain protein [Escherichia coli MS 78-1] gi|300845120|gb|EFK72880.1| LysM domain protein [Escherichia coli MS 78-1] Length = 304 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|331646371|ref|ZP_08347474.1| putative LysM domain protein [Escherichia coli M605] gi|331045123|gb|EGI17250.1| putative LysM domain protein [Escherichia coli M605] Length = 377 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 149 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 207 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 208 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 232 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 233 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 279 >gi|86158504|ref|YP_465289.1| peptidoglycan-binding protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775015|gb|ABC81852.1| peptidoglycan-binding protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 135 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 9/89 (10%) Query: 86 QDILSRGGWPELPIRP---LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 + + RG P +P P L G LR+R G L + + D +A+ Sbjct: 41 RGVPPRGERPRVPASPEALLAPGAVGEIQDALRDR----GYLGAHRRGEL--DRATSAAL 94 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + FQ GL +G D TL ++V Sbjct: 95 RRFQEAQGLAATGAPDRETLRRLHVDPAR 123 >gi|78049967|ref|YP_366142.1| hypothetical protein XCV4411 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038397|emb|CAJ26142.1| conserved hypothetical protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 615 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 57/159 (35%), Gaps = 14/159 (8%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETI-AQTEKAIAFYQ 86 P + I+ E + ++ L+ + G + + A T++A+ +Q Sbjct: 294 ASPGRQAAQSHILKEGSSGREVRKLESNLSALGYGDSDGHALQIDQKFNASTKQAVEAFQ 353 Query: 87 DILSRGGWPELP--IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV----ES 140 G + P L + L+ LI G + + D Y+ Sbjct: 354 W---ANGLTPVDGKAGPATLDAIGRQARGLQSDLIELGF-TGADSKPLRVDGYLGSGTRQ 409 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 AV FQ +GL +G+ D TL+++ Q+Q N Sbjct: 410 AVSAFQEANGLPVTGIADRGTLDSL---ARQTAEQIQTN 445 >gi|91210268|ref|YP_540254.1| hypothetical protein UTI89_C1241 [Escherichia coli UTI89] gi|117623298|ref|YP_852211.1| hypothetical protein APECO1_194 [Escherichia coli APEC O1] gi|218557994|ref|YP_002390907.1| hypothetical protein ECS88_1127 [Escherichia coli S88] gi|237706901|ref|ZP_04537382.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|91071842|gb|ABE06723.1| hypothetical protein UTI89_C1241 [Escherichia coli UTI89] gi|115512422|gb|ABJ00497.1| conserved hypothetical protein [Escherichia coli APEC O1] gi|218364763|emb|CAR02453.1| conserved hypothetical protein [Escherichia coli S88] gi|226898111|gb|EEH84370.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|294490390|gb|ADE89146.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli IHE3034] Length = 320 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 92 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 151 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 175 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 176 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|315291029|gb|EFU50392.1| LysM domain protein [Escherichia coli MS 153-1] Length = 306 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|312143788|ref|YP_003995234.1| cell wall hydrolase SleB [Halanaerobium sp. 'sapolanicus'] gi|311904439|gb|ADQ14880.1| cell wall hydrolase SleB [Halanaerobium sp. 'sapolanicus'] Length = 229 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 R L GN + V L+++L + S L + AVK FQ + L G+ Sbjct: 36 SRALSRGNEGLDVAVLQQKLKQLNYYNSS--LDGLYGDATVEAVKGFQRDNDLKADGV 91 >gi|110641289|ref|YP_669019.1| hypothetical protein ECP_1105 [Escherichia coli 536] gi|191173052|ref|ZP_03034585.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli F11] gi|300982405|ref|ZP_07176103.1| LysM domain protein [Escherichia coli MS 200-1] gi|306814037|ref|ZP_07448210.1| hypothetical protein ECNC101_18404 [Escherichia coli NC101] gi|110342881|gb|ABG69118.1| hypothetical protein YcfS precursor [Escherichia coli 536] gi|190906597|gb|EDV66203.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli F11] gi|300307242|gb|EFJ61762.1| LysM domain protein [Escherichia coli MS 200-1] gi|305852674|gb|EFM53122.1| hypothetical protein ECNC101_18404 [Escherichia coli NC101] gi|307627416|gb|ADN71720.1| hypothetical protein UM146_11755 [Escherichia coli UM146] gi|323953200|gb|EGB49066.1| ykud domain-containing protein [Escherichia coli H252] gi|323957939|gb|EGB53651.1| ykud domain-containing protein [Escherichia coli H263] gi|324005971|gb|EGB75190.1| LysM domain protein [Escherichia coli MS 57-2] gi|324013203|gb|EGB82422.1| LysM domain protein [Escherichia coli MS 60-1] Length = 319 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|146297696|ref|YP_001181467.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411272|gb|ABP68276.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 234 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R + G++ V ++ RL G + + +E+A+ LFQ ++GL + + Sbjct: 165 RTIFPGDTGDDVMAVQRRLKELGFYHGE--VDGKYGLAMEAAINLFQKKNGLPITNKITP 222 Query: 160 STLEAM 165 L+ M Sbjct: 223 YLLKKM 228 >gi|291558332|emb|CBL35449.1| Cell Wall Hydrolase./Putative peptidoglycan binding domain [Eubacterium siraeum V10Sc8a] Length = 219 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 5/96 (5%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ V+ +++ L G + ++ F E A+ FQ + GL +G+ D +TL Sbjct: 32 QKGSQGSEVEAVQQTLKDRGLFNAE--VTGYFGEKTEEAILRFQKQQGLAQTGVADEATL 89 Query: 163 EAMNVPVDLR--IRQLQVNLMRIKKLLEQKMGLRYV 196 + + + + +NL+ + + + G Y+ Sbjct: 90 KRLGISIGSIPPATTANINLL-ARIISAEGRGEPYI 124 >gi|26247257|ref|NP_753297.1| hypothetical protein c1387 [Escherichia coli CFT073] gi|26107658|gb|AAN79857.1|AE016759_131 Hypothetical protein ycfS precursor [Escherichia coli CFT073] Length = 377 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 149 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 207 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 208 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 232 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 233 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 279 >gi|78224173|ref|YP_385920.1| ErfK/YbiS/YcfS/YnhG [Geobacter metallireducens GS-15] gi|78195428|gb|ABB33195.1| ErfK/YbiS/YcfS/YnhG [Geobacter metallireducens GS-15] Length = 300 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 52/165 (31%), Gaps = 45/165 (27%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAV-ENGKV-GLRSTVIVGRVDRQTPILHSRINRIMFN 241 + ++ + ++VN+ L V E G + V G ++TP+ R+ N Sbjct: 93 RHVVPAAVVPGRLVVNLSELRLYFVPEGGTPRIVSFPVGTGSEGKETPLGVYRVTEKRAN 152 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W +P SI Q+ P Sbjct: 153 PAWHVPLSIRQE---------------------------------------RPRLPAVVP 173 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 PG N + S + + +H T P V R + GC+R+ Sbjct: 174 PGPDNPLGSHALRLT-DDGLMIHGTNRPW---GVGRNVSHGCIRL 214 >gi|330883919|gb|EGH18068.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 103 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 2/71 (2%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L VL N+ + G+ V + VGR +PI +++ NP Sbjct: 15 RFILPPGPREGIVL-NLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNP 73 Query: 243 YWVIPRSIIQK 253 W P SI + Sbjct: 74 TWTPPASIKAE 84 >gi|75812752|ref|YP_320369.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75705508|gb|ABA25180.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 171 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 9/89 (10%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDL---------DPSKGLSVAFDAYV 138 IL + +L + L G+ +VQ L+ L +G L + F A Sbjct: 64 ILIATAYTDLTLPTLRQGDRGRNVQLLQRILQDNGFLGAAGVRLGNPRGAIIDGIFGAVT 123 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 SAV+ Q R+ + +G V+ +T E +++ Sbjct: 124 VSAVRDLQRRYRIPVTGRVNPTTWEVLDM 152 >gi|303241311|ref|ZP_07327816.1| YD repeat protein [Acetivibrio cellulolyticus CD2] gi|302591150|gb|EFL60893.1| YD repeat protein [Acetivibrio cellulolyticus CD2] Length = 2818 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSS 160 L +G+ V L++ L+ G L KG+ + + + AV+ +Q+R + G Sbjct: 2478 LKVGSKGEDVVILQKELVELGCLTMPKGVEYGYYGNLTQEAVRQYQIRARITVDGKAGDQ 2537 Query: 161 TLEAM 165 T +A+ Sbjct: 2538 TWKAL 2542 >gi|315296618|gb|EFU55913.1| LysM domain protein [Escherichia coli MS 16-3] Length = 319 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|254161219|ref|YP_003044327.1| hypothetical protein ECB_01109 [Escherichia coli B str. REL606] gi|242376915|emb|CAQ31634.1| L,D-transpeptidase YcfS [Escherichia coli BL21(DE3)] gi|253973120|gb|ACT38791.1| hypothetical protein ECB_01109 [Escherichia coli B str. REL606] gi|253977334|gb|ACT43004.1| hypothetical protein ECD_01109 [Escherichia coli BL21(DE3)] Length = 320 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 92 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 151 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 175 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 176 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|312968808|ref|ZP_07783015.1| lysM domain protein [Escherichia coli 2362-75] gi|331657176|ref|ZP_08358138.1| putative LysM domain protein [Escherichia coli TA206] gi|222032866|emb|CAP75605.1| Uncharacterized protein ycfS [Escherichia coli LF82] gi|312286210|gb|EFR14123.1| lysM domain protein [Escherichia coli 2362-75] gi|312945675|gb|ADR26502.1| hypothetical protein NRG857_05370 [Escherichia coli O83:H1 str. NRG 857C] gi|330910929|gb|EGH39439.1| l,D-transpeptidase YcfS [Escherichia coli AA86] gi|331055424|gb|EGI27433.1| putative LysM domain protein [Escherichia coli TA206] Length = 319 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|215486324|ref|YP_002328755.1| hypothetical protein E2348C_1205 [Escherichia coli O127:H6 str. E2348/69] gi|215264396|emb|CAS08753.1| predicted protein [Escherichia coli O127:H6 str. E2348/69] gi|281178223|dbj|BAI54553.1| conserved hypothetical protein [Escherichia coli SE15] Length = 320 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 92 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 151 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 175 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 176 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|170681577|ref|YP_001744065.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli SMS-3-5] gi|300938684|ref|ZP_07153408.1| LysM domain protein [Escherichia coli MS 21-1] gi|170519295|gb|ACB17473.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli SMS-3-5] gi|300456329|gb|EFK19822.1| LysM domain protein [Escherichia coli MS 21-1] Length = 319 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|194439722|ref|ZP_03071791.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 101-1] gi|253773864|ref|YP_003036695.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|300928332|ref|ZP_07143867.1| LysM domain protein [Escherichia coli MS 187-1] gi|194421341|gb|EDX37359.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 101-1] gi|253324908|gb|ACT29510.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|300463664|gb|EFK27157.1| LysM domain protein [Escherichia coli MS 187-1] gi|323962712|gb|EGB58290.1| ykud domain-containing protein [Escherichia coli H489] gi|323973297|gb|EGB68486.1| ykud domain-containing protein [Escherichia coli TA007] gi|332342662|gb|AEE55996.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 319 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|186682808|ref|YP_001866004.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186465260|gb|ACC81061.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 223 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 10/99 (10%) Query: 75 IAQTEKAIAFY-QDILSRGGWPELPIRPLHLG-----NSSVSVQRLRERLIISGDLDPSK 128 A+ Y + + + P + RP +G Q +R+ G+L Sbjct: 129 FARLSTGRYVYARWVADKPNNPPVTSRPGGVGGSVILTRGSRGQLVRDVQTALGNL---- 184 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + + + V+ FQ GL G V T A+ + Sbjct: 185 RVDGIYGQETVNQVRSFQASKGLLVDGTVGPETRAALGI 223 >gi|118443521|ref|YP_878230.1| N-acetylmuramoyl-L-alanine amidase [Clostridium novyi NT] gi|118133977|gb|ABK61021.1| N-acetylmuramoyl-L-alanine amidase cwlL precursor (Cellwall hydrolase) (Autolysin) [Clostridium novyi NT] Length = 431 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + ++ERLI G G +F + AV Q + L G+V T A Sbjct: 368 GAKGNITKIIQERLIDKGYSVGKWGADGSFGSGTYDAVVKLQKDNSLSADGIVGKDTWRA 427 Query: 165 M 165 + Sbjct: 428 L 428 >gi|239827527|ref|YP_002950151.1| spore cortex-lytic enzyme [Geobacillus sp. WCH70] gi|239807820|gb|ACS24885.1| spore cortex-lytic enzyme [Geobacillus sp. WCH70] Length = 270 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + + G V L+ RL G + + F AV+ FQ +GL Sbjct: 29 KAFSNQVIQRGAVGDDVIELQARLQYIGFYNG--KIDGVFGWNTYWAVRNFQYEYGLPVD 86 Query: 155 GMVDSSTLEAM 165 G+V ST + Sbjct: 87 GLVGESTKAKL 97 >gi|332089283|gb|EGI94389.1| lysM domain protein [Shigella boydii 5216-82] Length = 213 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 45 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 103 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 104 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 128 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 129 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 175 >gi|291282133|ref|YP_003498951.1| hypothetical protein G2583_1373 [Escherichia coli O55:H7 str. CB9615] gi|209773014|gb|ACI84819.1| hypothetical protein ECs1491 [Escherichia coli] gi|290762006|gb|ADD55967.1| hypothetical protein G2583_1373 [Escherichia coli O55:H7 str. CB9615] Length = 320 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 92 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 151 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 175 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 176 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|74311674|ref|YP_310093.1| hypothetical protein SSON_1133 [Shigella sonnei Ss046] gi|73855151|gb|AAZ87858.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|323165622|gb|EFZ51409.1| lysM domain protein [Shigella sonnei 53G] Length = 272 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 44 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 102 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 103 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PTV 127 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 128 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 174 >gi|332092852|gb|EGI97920.1| hypothetical protein SD15574_2037 [Shigella dysenteriae 155-74] Length = 273 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 45 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 103 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 104 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 128 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 129 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 175 >gi|218689065|ref|YP_002397277.1| hypothetical protein ECED1_1256 [Escherichia coli ED1a] gi|218426629|emb|CAR07457.1| conserved hypothetical protein [Escherichia coli ED1a] Length = 320 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 92 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 151 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 175 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 176 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|209918369|ref|YP_002292453.1| hypothetical protein ECSE_1178 [Escherichia coli SE11] gi|209911628|dbj|BAG76702.1| conserved hypothetical protein [Escherichia coli SE11] gi|284920938|emb|CBG34001.1| putative peptidoglycan-binding protein [Escherichia coli 042] Length = 321 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 93 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 151 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 152 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 223 >gi|170078936|ref|YP_001735575.1| peptidoglycan binding domain-containing protein [Synechococcus sp. PCC 7002] gi|169886605|gb|ACB00319.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7002] Length = 537 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + V L+ L +G L S + F E+AV+ FQ + L +G VD T + Sbjct: 75 NDDVGYLQAFLQAAGFLPRSAVIDGIFGRTTEAAVRSFQRANKLPKTGTVDPRTWRTI-- 132 Query: 168 PVDLRIRQLQVN 179 R +QL + Sbjct: 133 ---ERYQQLFLA 141 Score = 43.7 bits (102), Expect = 0.058, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 58/171 (33%), Gaps = 16/171 (9%) Query: 2 VGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDM 61 VGYL+ F + G+ V+ R + R Sbjct: 78 VGYLQAFLQAAGFLPRSAVIDGIFGRTTEAAVRSFQRANKLPKTGTVDPRTWRTIERYQ- 136 Query: 62 GIDSDIPIISKETIAQTEKAIAFYQD------ILSRG-GWPELPIRPLHLGNSSVSVQRL 114 + P ++ Q + +F Q +L RG G+ P + +V L Sbjct: 137 QLFLASPATAEPPSEQAPEPTSFLQQDRPEKLLLRRGAGFEISPQQ--------QAVYYL 188 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ L + + L F E+ VK FQ+R L G+V ST EA+ Sbjct: 189 QKLLQRGLFIPETAKLDGKFGRQTENGVKFFQVRQKLVADGIVGLSTWEAL 239 Score = 37.5 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 17/37 (45%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F + E AV+ FQM L G+V + T + Sbjct: 306 PIDGHFGSQTEQAVRRFQMIAELTIDGVVGAQTWMTL 342 >gi|82777274|ref|YP_403623.1| hypothetical protein SDY_2037 [Shigella dysenteriae Sd197] gi|331652165|ref|ZP_08353184.1| putative LysM domain protein [Escherichia coli M718] gi|81241422|gb|ABB62132.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|331050443|gb|EGI22501.1| putative LysM domain protein [Escherichia coli M718] Length = 320 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 92 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 151 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 175 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 176 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|320659378|gb|EFX26947.1| hypothetical protein ECO5905_20078 [Escherichia coli O55:H7 str. USDA 5905] Length = 319 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|309788185|ref|ZP_07682791.1| lysM domain protein [Shigella dysenteriae 1617] gi|308924037|gb|EFP69538.1| lysM domain protein [Shigella dysenteriae 1617] Length = 319 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|291448714|ref|ZP_06588104.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291351661|gb|EFE78565.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 503 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S +V+RL+ L + L + G+ +F ++AV+ +Q L G V +T Sbjct: 438 LKQGGSGDAVKRLQRALTAA--LGKTVGVDGSFGPATDTAVRNYQDTRKLGVDGQVGPAT 495 Query: 162 LEAM 165 +A+ Sbjct: 496 WKAL 499 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S V ++ L + F + +SAV+ FQ LD GMV T A Sbjct: 371 GSSGPQVTAVQTLLTQQKYSPG--KVDGLFGSDTKSAVEKFQRDRSLDADGMVGPKTWTA 428 Query: 165 M 165 + Sbjct: 429 L 429 >gi|239945248|ref|ZP_04697185.1| putative amidase [Streptomyces roseosporus NRRL 15998] Length = 518 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S +V+RL+ L + L + G+ +F ++AV+ +Q L G V +T Sbjct: 453 LKQGGSGDAVKRLQRALTAA--LGKTVGVDGSFGPATDTAVRNYQDTRKLGVDGQVGPAT 510 Query: 162 LEAM 165 +A+ Sbjct: 511 WKAL 514 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S V ++ L + F + +SAV+ FQ LD GMV T A Sbjct: 386 GSSGPQVTAVQTLLTQQKYSPG--KVDGLFGSDTKSAVEKFQRDRSLDADGMVGPKTWTA 443 Query: 165 M 165 + Sbjct: 444 L 444 >gi|227886530|ref|ZP_04004335.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 83972] gi|300974585|ref|ZP_07172646.1| LysM domain protein [Escherichia coli MS 45-1] gi|301051098|ref|ZP_07197932.1| LysM domain protein [Escherichia coli MS 185-1] gi|227836734|gb|EEJ47200.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 83972] gi|300297270|gb|EFJ53655.1| LysM domain protein [Escherichia coli MS 185-1] gi|300410527|gb|EFJ94065.1| LysM domain protein [Escherichia coli MS 45-1] gi|307553114|gb|ADN45889.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli ABU 83972] Length = 319 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|15801230|ref|NP_287247.1| hypothetical protein Z1752 [Escherichia coli O157:H7 EDL933] gi|15830745|ref|NP_309518.1| hypothetical protein ECs1491 [Escherichia coli O157:H7 str. Sakai] gi|157160640|ref|YP_001457958.1| LysM/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli HS] gi|170080764|ref|YP_001730084.1| hypothetical protein ECDH10B_1185 [Escherichia coli str. K-12 substr. DH10B] gi|188496367|ref|ZP_03003637.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 53638] gi|218553690|ref|YP_002386603.1| hypothetical protein ECIAI1_1150 [Escherichia coli IAI1] gi|218694646|ref|YP_002402313.1| hypothetical protein EC55989_1225 [Escherichia coli 55989] gi|238900367|ref|YP_002926163.1| hypothetical protein BWG_0961 [Escherichia coli BW2952] gi|254792496|ref|YP_003077333.1| hypothetical protein ECSP_1415 [Escherichia coli O157:H7 str. TW14359] gi|260843353|ref|YP_003221131.1| hypothetical protein ECO103_1158 [Escherichia coli O103:H2 str. 12009] gi|260854596|ref|YP_003228487.1| hypothetical protein ECO26_1446 [Escherichia coli O26:H11 str. 11368] gi|260867475|ref|YP_003233877.1| hypothetical protein ECO111_1390 [Escherichia coli O111:H- str. 11128] gi|293414406|ref|ZP_06657055.1| ycfS protein [Escherichia coli B185] gi|293433402|ref|ZP_06661830.1| ycfS protein [Escherichia coli B088] gi|331641656|ref|ZP_08342791.1| putative LysM domain protein [Escherichia coli H736] gi|331662524|ref|ZP_08363447.1| putative LysM domain protein [Escherichia coli TA143] gi|331667513|ref|ZP_08368377.1| putative LysM domain protein [Escherichia coli TA271] gi|331672628|ref|ZP_08373417.1| putative LysM domain protein [Escherichia coli TA280] gi|331676905|ref|ZP_08377601.1| putative LysM domain protein [Escherichia coli H591] gi|331682619|ref|ZP_08383238.1| putative LysM domain protein [Escherichia coli H299] gi|332279699|ref|ZP_08392112.1| conserved hypothetical protein [Shigella sp. D9] gi|12514663|gb|AAG55859.1|AE005321_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13360955|dbj|BAB34914.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|157066320|gb|ABV05575.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli HS] gi|169888599|gb|ACB02306.1| conserved protein [Escherichia coli str. K-12 substr. DH10B] gi|188491566|gb|EDU66669.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli 53638] gi|209773008|gb|ACI84816.1| hypothetical protein ECs1491 [Escherichia coli] gi|209773010|gb|ACI84817.1| hypothetical protein ECs1491 [Escherichia coli] gi|209773012|gb|ACI84818.1| hypothetical protein ECs1491 [Escherichia coli] gi|209773016|gb|ACI84820.1| hypothetical protein ECs1491 [Escherichia coli] gi|218351378|emb|CAU97084.1| conserved hypothetical protein [Escherichia coli 55989] gi|218360458|emb|CAQ98012.1| conserved hypothetical protein [Escherichia coli IAI1] gi|238860297|gb|ACR62295.1| conserved protein [Escherichia coli BW2952] gi|254591896|gb|ACT71257.1| conserved protein [Escherichia coli O157:H7 str. TW14359] gi|257753245|dbj|BAI24747.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368] gi|257758500|dbj|BAI29997.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009] gi|257763831|dbj|BAI35326.1| conserved predicted protein [Escherichia coli O111:H- str. 11128] gi|291324221|gb|EFE63643.1| ycfS protein [Escherichia coli B088] gi|291434464|gb|EFF07437.1| ycfS protein [Escherichia coli B185] gi|309701384|emb|CBJ00685.1| putative peptidoglycan-binding protein [Escherichia coli ETEC H10407] gi|323937853|gb|EGB34117.1| ykud domain-containing protein [Escherichia coli E1520] gi|323942582|gb|EGB38749.1| ykud domain-containing protein [Escherichia coli E482] gi|324117316|gb|EGC11223.1| ykud domain-containing protein [Escherichia coli E1167] gi|331038454|gb|EGI10674.1| putative LysM domain protein [Escherichia coli H736] gi|331060946|gb|EGI32910.1| putative LysM domain protein [Escherichia coli TA143] gi|331065098|gb|EGI36993.1| putative LysM domain protein [Escherichia coli TA271] gi|331070271|gb|EGI41637.1| putative LysM domain protein [Escherichia coli TA280] gi|331075594|gb|EGI46892.1| putative LysM domain protein [Escherichia coli H591] gi|331080250|gb|EGI51429.1| putative LysM domain protein [Escherichia coli H299] gi|332102051|gb|EGJ05397.1| conserved hypothetical protein [Shigella sp. D9] Length = 320 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 92 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 151 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 175 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 176 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|303240529|ref|ZP_07327045.1| Peptidoglycan-binding domain 1 protein [Acetivibrio cellulolyticus CD2] gi|302591931|gb|EFL61663.1| Peptidoglycan-binding domain 1 protein [Acetivibrio cellulolyticus CD2] Length = 1456 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Query: 103 HLGNSSV-SVQRLRERLIISGDLDPSKGLSV-------AFDAYVESAVKLFQMRHGLDPS 154 G+++ V L+++L+ G L FD + AV+ +Q GL Sbjct: 1008 QYGDNNKNDVIVLQKKLVTHGYLKMPIDQYTKTQVPFGTFDEVTKEAVEQYQSDKGLYVD 1067 Query: 155 GMVDSSTLEAMNVP 168 G+VD T A+ +P Sbjct: 1068 GVVDKDTWIALTLP 1081 >gi|227549428|ref|ZP_03979477.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium lipophiloflavum DSM 44291] gi|227078505|gb|EEI16468.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium lipophiloflavum DSM 44291] Length = 369 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 71/185 (38%), Gaps = 27/185 (14%) Query: 50 DRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH-----L 104 D +D + + S ++ +A++ KA + I+ G + +R L L Sbjct: 3 DGYDGKVGEWNSRQFSHEEMLFDAHLAESLKAFQQSRGIVPTGDIDTVTLRELREASYTL 62 Query: 105 G-----------NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 G V+RL+E+L G S + F+ A+ +Q+ GL+ Sbjct: 63 GARVLSFQPNQIMVGDDVRRLQEQLQELGFY--SHRVDGHFNRQTHKALVNYQINSGLEG 120 Query: 154 SGMVDSSTLEAMNVPVDLRI----RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVE 209 G+ S+TL A+++ + RI R+++ + G R V+ S+ Sbjct: 121 DGVCGSATLHALSL-LGRRITGGSAHAIRERERVRQAGPRLSGKRVVI----DPSVHYSA 175 Query: 210 NGKVG 214 NG Sbjct: 176 NGTTV 180 >gi|225453480|ref|XP_002274477.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297734565|emb|CBI16616.3| unnamed protein product [Vitis vinifera] Length = 353 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKG-LSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G+ + L++ G L G ++ FD +ESAV +Q + GL +G +DS T Sbjct: 55 RRGSRISGMAELKKYFNRFGYLGFQDGNVTDVFDTRLESAVAAYQAKLGLPVTGRLDSET 114 Query: 162 LEAM 165 L M Sbjct: 115 LSQM 118 >gi|90419802|ref|ZP_01227711.1| putative serine protease, trypsin family [Aurantimonas manganoxydans SI85-9A1] gi|90335843|gb|EAS49591.1| putative serine protease, trypsin family [Aurantimonas manganoxydans SI85-9A1] Length = 523 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 10/56 (17%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVES----AVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ RL +GD + +D + + A++ FQ RHG+ G++D + L + Sbjct: 59 LQIRLSWTGDYAGA------YDGQIAASSLRAIRDFQARHGMVADGVIDEAMLRLL 108 >gi|320653897|gb|EFX21971.1| hypothetical protein ECO7815_16598 [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 319 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|291484557|dbj|BAI85632.1| carboxy-terminal processing protease [Bacillus subtilis subsp. natto BEST195] Length = 466 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 10/107 (9%) Query: 76 AQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 Q + + Y + P L + G++ +V+ ++ L G ++ + Sbjct: 359 PQVKAELPDYAKL------PYLDADKTYKSGDTGTNVKVAQKMLKALGY---KVNVNSTY 409 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 D S VK FQ + L +G++ T + + + ++ + Sbjct: 410 DQDFVSVVKQFQKKEELKETGILTGDTTTKLMIELQKKLSDNDTQME 456 >gi|254562718|ref|YP_003069813.1| hypothetical protein METDI4352 [Methylobacterium extorquens DM4] gi|254269996|emb|CAX25982.1| conserved hypothetical protein [Methylobacterium extorquens DM4] Length = 232 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 19/55 (34%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V ++ L+ G G +AV FQ GL G+ T A+ Sbjct: 3 VAEIQRALLARGYDLGKSGADGDAGPLTIAAVTAFQRSAGLVADGIAGPKTQAAL 57 >gi|226305739|ref|YP_002765699.1| hypothetical protein RER_22520 [Rhodococcus erythropolis PR4] gi|226184856|dbj|BAH32960.1| hypothetical protein RER_22520 [Rhodococcus erythropolis PR4] Length = 262 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 5/103 (4%) Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELPIRP-----LHLGNSSVSVQRLRERLIISGDL 124 S + +A ++ Y +L+ P + +P L GN+ V L+ L Sbjct: 159 ASAKLVAFAQRLEGGYLGLLAGTAVPPIIPKPVARPTLRRGNTGGDVTYLQGLLNRMFAS 218 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + F ES V+ Q R GL G+V S T AM V Sbjct: 219 YSKLVVDGDFGPATESVVREVQRRSGLAVDGIVGSDTWRAMGV 261 >gi|320197560|gb|EFW72173.1| L,D-transpeptidase YcfS [Escherichia coli WV_060327] Length = 319 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|320179185|gb|EFW54143.1| L,D-transpeptidase YcfS [Shigella boydii ATCC 9905] Length = 273 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 45 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 103 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 104 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 128 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 129 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 175 >gi|300727563|ref|ZP_07060953.1| putative peptidoglycan binding domain protein [Prevotella bryantii B14] gi|299775152|gb|EFI71754.1| putative peptidoglycan binding domain protein [Prevotella bryantii B14] Length = 274 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPS----KGLSVAFDAYVESAVKLFQMRHGL 151 + R L G V L L ++ S K +DA + SAVK FQ GL Sbjct: 132 SIGDRTLKTGIHGSDVTALTGYLATGLYINHSWIKEKEGYSLYDATIASAVKHFQKDAGL 191 Query: 152 DPSGMVDSSTLEAM 165 +G+ D +T++ + Sbjct: 192 AQTGIADQTTIDKL 205 >gi|258652666|ref|YP_003201822.1| peptidoglycan-binding protein [Nakamurella multipartita DSM 44233] gi|258555891|gb|ACV78833.1| Peptidoglycan-binding domain 1 protein [Nakamurella multipartita DSM 44233] Length = 201 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 13/98 (13%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 + G WP L G ++ +V +R + + F +AV+ FQ RH Sbjct: 50 AVGTWPVLSH-----GVANSAV-TVRSLQYLLNAHASCLAVDGVFGPRTTAAVRNFQARH 103 Query: 150 GLDPSGMVDSSTLEAM-------NVPVDLRIRQLQVNL 180 L G+V T A+ +V ++ Q Q+N Sbjct: 104 ALVVDGIVGPQTWTALLVTIRRGSVGPAVQAFQDQMNA 141 >gi|224162231|ref|XP_002338425.1| predicted protein [Populus trichocarpa] gi|222872207|gb|EEF09338.1| predicted protein [Populus trichocarpa] Length = 304 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGL-SVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G + + L++ L G L + FD +ESA+K +Q L+ +G++D ST Sbjct: 47 RKGQTVEGLVELKQYLKRFGYYPSDVNLMTSDFDDLLESALKTYQNYFHLNVTGILDDST 106 Query: 162 LEAMNVP 168 ++ M +P Sbjct: 107 IKQMMIP 113 >gi|118488262|gb|ABK95950.1| unknown [Populus trichocarpa] Length = 304 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGL-SVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G + + L++ L G L + FD +ESA+K +Q L+ +G++D ST Sbjct: 47 RKGQTVEGLVELKQYLKRFGYYPSDVNLMTSDFDDLLESALKTYQNYFHLNVTGILDDST 106 Query: 162 LEAMNVP 168 ++ M +P Sbjct: 107 IKQMMIP 113 >gi|110805127|ref|YP_688647.1| hypothetical protein SFV_1133 [Shigella flexneri 5 str. 8401] gi|110614675|gb|ABF03342.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|281600529|gb|ADA73513.1| hypothetical protein SFxv_1270 [Shigella flexneri 2002017] Length = 321 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 93 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 151 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 152 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 223 >gi|170020492|ref|YP_001725446.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli ATCC 8739] gi|187776311|ref|ZP_02801799.2| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4196] gi|188025150|ref|ZP_02776359.2| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4113] gi|189010664|ref|ZP_02808490.2| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4076] gi|189402503|ref|ZP_02782835.2| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4401] gi|189403583|ref|ZP_02796346.2| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4486] gi|189404503|ref|ZP_02789897.2| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4501] gi|189405395|ref|ZP_02815098.2| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC869] gi|189406283|ref|ZP_02827509.2| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC508] gi|193066279|ref|ZP_03047330.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E22] gi|193070913|ref|ZP_03051844.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E110019] gi|194429794|ref|ZP_03062308.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli B171] gi|195938872|ref|ZP_03084254.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4024] gi|208808997|ref|ZP_03251334.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4206] gi|208816343|ref|ZP_03257522.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4045] gi|208822587|ref|ZP_03262906.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4042] gi|209398807|ref|YP_002269958.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4115] gi|217327994|ref|ZP_03444076.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. TW14588] gi|256018631|ref|ZP_05432496.1| hypothetical protein ShiD9_06934 [Shigella sp. D9] gi|256023189|ref|ZP_05437054.1| hypothetical protein E4_07444 [Escherichia sp. 4_1_40B] gi|261256217|ref|ZP_05948750.1| hypothetical protein EscherichiacoliO157EcO_10354 [Escherichia coli O157:H7 str. FRIK966] gi|300821106|ref|ZP_07101255.1| LysM domain protein [Escherichia coli MS 119-7] gi|300902507|ref|ZP_07120487.1| LysM domain protein [Escherichia coli MS 84-1] gi|300917884|ref|ZP_07134517.1| LysM domain protein [Escherichia coli MS 115-1] gi|300922642|ref|ZP_07138739.1| LysM domain protein [Escherichia coli MS 182-1] gi|300948703|ref|ZP_07162780.1| LysM domain protein [Escherichia coli MS 116-1] gi|300956221|ref|ZP_07168533.1| LysM domain protein [Escherichia coli MS 175-1] gi|301023323|ref|ZP_07187116.1| LysM domain protein [Escherichia coli MS 69-1] gi|301029580|ref|ZP_07192658.1| LysM domain protein [Escherichia coli MS 196-1] gi|301305648|ref|ZP_07211737.1| LysM domain protein [Escherichia coli MS 124-1] gi|301644529|ref|ZP_07244522.1| LysM domain protein [Escherichia coli MS 146-1] gi|307137748|ref|ZP_07497104.1| hypothetical protein EcolH7_06395 [Escherichia coli H736] gi|307310110|ref|ZP_07589760.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli W] gi|309796543|ref|ZP_07690950.1| LysM domain protein [Escherichia coli MS 145-7] gi|169755420|gb|ACA78119.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli ATCC 8739] gi|187767857|gb|EDU31701.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4196] gi|188014622|gb|EDU52744.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4113] gi|188999155|gb|EDU68141.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4076] gi|189355237|gb|EDU73656.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4401] gi|189359863|gb|EDU78282.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4486] gi|189365188|gb|EDU83604.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4501] gi|189370390|gb|EDU88806.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC869] gi|189375507|gb|EDU93923.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC508] gi|192926051|gb|EDV80694.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E22] gi|192955767|gb|EDV86239.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli E110019] gi|194412141|gb|EDX28449.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli B171] gi|208728798|gb|EDZ78399.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4206] gi|208732991|gb|EDZ81679.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4045] gi|208738072|gb|EDZ85755.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4042] gi|209160207|gb|ACI37640.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. EC4115] gi|217318421|gb|EEC26847.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. TW14588] gi|260449748|gb|ACX40170.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli DH1] gi|299877575|gb|EFI85786.1| LysM domain protein [Escherichia coli MS 196-1] gi|300316949|gb|EFJ66733.1| LysM domain protein [Escherichia coli MS 175-1] gi|300397048|gb|EFJ80586.1| LysM domain protein [Escherichia coli MS 69-1] gi|300405408|gb|EFJ88946.1| LysM domain protein [Escherichia coli MS 84-1] gi|300414874|gb|EFJ98184.1| LysM domain protein [Escherichia coli MS 115-1] gi|300420991|gb|EFK04302.1| LysM domain protein [Escherichia coli MS 182-1] gi|300451797|gb|EFK15417.1| LysM domain protein [Escherichia coli MS 116-1] gi|300526405|gb|EFK47474.1| LysM domain protein [Escherichia coli MS 119-7] gi|300839076|gb|EFK66836.1| LysM domain protein [Escherichia coli MS 124-1] gi|301077111|gb|EFK91917.1| LysM domain protein [Escherichia coli MS 146-1] gi|306909828|gb|EFN40322.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli W] gi|308119855|gb|EFO57117.1| LysM domain protein [Escherichia coli MS 145-7] gi|315060390|gb|ADT74717.1| L,D-transpeptidase linking LPP to murein [Escherichia coli W] gi|315135745|dbj|BAJ42904.1| hypothetical protein ECDH1ME8569_1048 [Escherichia coli DH1] gi|315253013|gb|EFU32981.1| LysM domain protein [Escherichia coli MS 85-1] gi|315618285|gb|EFU98875.1| lysM domain protein [Escherichia coli 3431] gi|320188120|gb|EFW62785.1| L,D-transpeptidase YcfS [Escherichia coli O157:H7 str. EC1212] gi|320201008|gb|EFW75592.1| L,D-transpeptidase YcfS [Escherichia coli EC4100B] gi|320637564|gb|EFX07364.1| hypothetical protein ECO5101_10667 [Escherichia coli O157:H7 str. G5101] gi|320643125|gb|EFX12326.1| hypothetical protein ECO9389_04146 [Escherichia coli O157:H- str. 493-89] gi|320648583|gb|EFX17238.1| hypothetical protein ECO2687_20261 [Escherichia coli O157:H- str. H 2687] gi|323156750|gb|EFZ42886.1| lysM domain protein [Escherichia coli EPECa14] gi|323163657|gb|EFZ49479.1| lysM domain protein [Escherichia coli E128010] gi|323175268|gb|EFZ60881.1| lysM domain protein [Escherichia coli LT-68] gi|323175655|gb|EFZ61249.1| lysM domain protein [Escherichia coli 1180] gi|323185764|gb|EFZ71125.1| lysM domain protein [Escherichia coli 1357] gi|323379050|gb|ADX51318.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli KO11] gi|324017495|gb|EGB86714.1| LysM domain protein [Escherichia coli MS 117-3] gi|326339336|gb|EGD63150.1| L,D-transpeptidase YcfS [Escherichia coli O157:H7 str. 1125] gi|326340417|gb|EGD64220.1| L,D-transpeptidase YcfS [Escherichia coli O157:H7 str. 1044] Length = 319 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|30062646|ref|NP_836817.1| hypothetical protein S1197 [Shigella flexneri 2a str. 2457T] gi|56479826|ref|NP_707028.2| hypothetical protein SF1117 [Shigella flexneri 2a str. 301] gi|30040892|gb|AAP16623.1| hypothetical protein S1197 [Shigella flexneri 2a str. 2457T] gi|56383377|gb|AAN42735.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|332767335|gb|EGJ97529.1| putative L,D-transpeptidase YcfS [Shigella flexneri 2930-71] Length = 320 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 92 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 151 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 175 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 176 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|167749731|ref|ZP_02421858.1| hypothetical protein EUBSIR_00698 [Eubacterium siraeum DSM 15702] gi|167751426|ref|ZP_02423553.1| hypothetical protein EUBSIR_02422 [Eubacterium siraeum DSM 15702] gi|167655672|gb|EDR99801.1| hypothetical protein EUBSIR_02422 [Eubacterium siraeum DSM 15702] gi|167657354|gb|EDS01484.1| hypothetical protein EUBSIR_00698 [Eubacterium siraeum DSM 15702] gi|291531931|emb|CBK97516.1| Cell Wall Hydrolase./Putative peptidoglycan binding domain [Eubacterium siraeum 70/3] Length = 231 Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 5/96 (5%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ V+ +++ L G + ++ F E A+ FQ + GL +G+ D++TL Sbjct: 44 QKGSQGSEVEAVQQTLKDRGLFNAE--VTGYFGEKTEEAILRFQKQQGLAQTGVADNATL 101 Query: 163 EAMNVPVDLR--IRQLQVNLMRIKKLLEQKMGLRYV 196 + + + + +NL+ + + + G Y+ Sbjct: 102 KRLGISIGSIPPATTANINLL-ARIISAEGRGEPYI 136 >gi|191168573|ref|ZP_03030357.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli B7A] gi|190901367|gb|EDV61132.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli B7A] Length = 319 Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|328882102|emb|CCA55341.1| hypothetical protein SVEN_2054 [Streptomyces venezuelae ATCC 10712] Length = 333 Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 6/72 (8%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVD 158 L LG+S V+ L+ RL ++ FD V+ AV +Q + G+ Sbjct: 262 TLSLGSSGPEVRELQRRLEAVWAYHG--RINGRFDEEVQEAVARYQSWRYVQDDPEGVYG 319 Query: 159 SSTLEAM--NVP 168 +T + N P Sbjct: 320 PTTRRLLEENTP 331 >gi|160915943|ref|ZP_02078151.1| hypothetical protein EUBDOL_01967 [Eubacterium dolichum DSM 3991] gi|158432419|gb|EDP10708.1| hypothetical protein EUBDOL_01967 [Eubacterium dolichum DSM 3991] Length = 641 Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 4/73 (5%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHG 150 P P PL LG+ V L+ L + P ++ F+ +SAV+ FQ + Sbjct: 298 PSYPGTPLQLGSVGKDVAMLQAFLNAIAINYPAIRPIFPVNGEFETATQSAVRTFQRQFN 357 Query: 151 LDPSGMVDSSTLE 163 L G+V +T Sbjct: 358 LTVDGIVGRTTWY 370 Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 7/85 (8%) Query: 98 PIRPLHLGNSSVSVQRL---RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P PL LG S +V+ + +L PS + F A +A++ FQ L Sbjct: 491 PGIPLQLGTSGDAVEAVQNAINKLAKQYTDIPSVNVDGIFGAATRNAIRNFQSLFDLTAD 550 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVN 179 G+V T E + QLQ N Sbjct: 551 GIVGVKTWELL----FSIAAQLQAN 571 Score = 43.3 bits (101), Expect = 0.080, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 10/83 (12%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRE-----RLIISGDLDPSKGLSVAFDAYVE 139 Y L G W + R L G+ SV Q ++ RL P + F A Sbjct: 390 YLSTLYSGVWQQ---RVLRQGDRSVETQLMQYYLSSIRLFYPE--IPEVSIDGRFGAGTY 444 Query: 140 SAVKLFQMRHGLDPSGMVDSSTL 162 +A+ FQ R GL G+V +T Sbjct: 445 NAILAFQKRFGLTADGLVGQATW 467 >gi|115373620|ref|ZP_01460915.1| interstitial collagenase (Matrixmetalloproteinase-1) (MMP-1) (Fibroblast collagenase) [Stigmatella aurantiaca DW4/3-1] gi|310824941|ref|YP_003957299.1| peptidase [Stigmatella aurantiaca DW4/3-1] gi|115369323|gb|EAU68263.1| interstitial collagenase (Matrixmetalloproteinase-1) (MMP-1) (Fibroblast collagenase) [Stigmatella aurantiaca DW4/3-1] gi|309398013|gb|ADO75472.1| Peptidase [Stigmatella aurantiaca DW4/3-1] Length = 477 Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 16/79 (20%) Query: 103 HLGNSSVSVQRLRERLIISGDLD----------------PSKGLSVAFDAYVESAVKLFQ 146 G+ V+ L G FD +E+ ++ FQ Sbjct: 38 RKGSRGPQVEEAFRHLQAHGYFPNAELAREYPGFRPAVAREPARPDVFDDALEAGLQRFQ 97 Query: 147 MRHGLDPSGMVDSSTLEAM 165 GL +G +D++T M Sbjct: 98 EAQGLPVTGELDAATRALM 116 >gi|313650431|gb|EFS14838.1| lysM domain protein [Shigella flexneri 2a str. 2457T] gi|332758276|gb|EGJ88599.1| lysM domain protein [Shigella flexneri 4343-70] gi|332761053|gb|EGJ91340.1| lysM domain protein [Shigella flexneri K-671] gi|333005662|gb|EGK25180.1| lysM domain protein [Shigella flexneri K-218] gi|333019353|gb|EGK38636.1| lysM domain protein [Shigella flexneri K-304] Length = 319 Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|320095837|ref|ZP_08027475.1| choline binding protein A [Actinomyces sp. oral taxon 178 str. F0338] gi|319977226|gb|EFW08931.1| choline binding protein A [Actinomyces sp. oral taxon 178 str. F0338] Length = 416 Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 5/68 (7%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G + + V ++ RL I + + DA +AVK FQ R GL +G+V Sbjct: 192 STNTLTWGMNGIKVMIVQRRLGIWHTMKLASV-----DASFVTAVKNFQWRAGLSQTGVV 246 Query: 158 DSSTLEAM 165 D T AM Sbjct: 247 DEQTWNAM 254 >gi|261226983|ref|ZP_05941264.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli O157:H7 str. FRIK2000] Length = 319 Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|242088519|ref|XP_002440092.1| hypothetical protein SORBIDRAFT_09g025870 [Sorghum bicolor] gi|241945377|gb|EES18522.1| hypothetical protein SORBIDRAFT_09g025870 [Sorghum bicolor] Length = 380 Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G+ + L+ L G + P+ FD ++E+AV+ +Q L +G +DS Sbjct: 57 RRGSRVAGLADLKRYLARFGYMQAPRPAHEHDDVFDDHMEAAVRRYQSSLSLPVTGRLDS 116 Query: 160 STL 162 STL Sbjct: 117 STL 119 >gi|226499088|ref|NP_001151749.1| metalloendoproteinase 1 [Zea mays] gi|195649493|gb|ACG44214.1| metalloendoproteinase 1 precursor [Zea mays] Length = 365 Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 H+G + L++ L G L P S AFD +E+A+ +Q GL+ +G +D Sbjct: 50 HMGEERQGLAGLKDYLSHFGYLPPPPPSSPFSDAFDQNLEAAIATYQRNFGLNATGALDP 109 Query: 160 STLEAMNVP 168 ST+ M P Sbjct: 110 STVSQMVAP 118 >gi|239991710|ref|ZP_04712374.1| putative amidase [Streptomyces roseosporus NRRL 11379] Length = 517 Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G S +V+RL+ L + L + G+ +F ++AV+ +Q L G V +T Sbjct: 452 LKQGGSGDAVKRLQRALTAA--LGKTVGVDGSFGPATDTAVRNYQDTRKLGVDGQVGPAT 509 Query: 162 LEAM 165 +A+ Sbjct: 510 WKAL 513 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S V ++ L + F + +SAV+ FQ LD GMV T A Sbjct: 385 GSSGPQVTAVQTLLTQQKYSPG--KVDGLFGSDTKSAVEKFQRDRSLDADGMVGPKTWTA 442 Query: 165 M 165 + Sbjct: 443 L 443 >gi|325677685|ref|ZP_08157337.1| putative spore cortex-lytic enzyme [Ruminococcus albus 8] gi|324110653|gb|EGC04817.1| putative spore cortex-lytic enzyme [Ruminococcus albus 8] Length = 225 Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +G+ V+ ++E+L G + ++ + +AV FQ + G+ +G TL+ Sbjct: 39 IGSYGTEVRAIQEKLKERGLFNS--NVTGYYGEITRNAVLAFQKQQGISQTGTAGPVTLK 96 Query: 164 AMNVP 168 A+ + Sbjct: 97 ALGIS 101 >gi|310644287|ref|YP_003949046.1| carboxyl-terminal protease [Paenibacillus polymyxa SC2] gi|309249238|gb|ADO58805.1| Carboxyl-terminal protease [Paenibacillus polymyxa SC2] Length = 488 Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 8/91 (8%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L +S V+ + L G + FD ES+V FQ L +G++D+ Sbjct: 391 KSLKYNMNSSDVKNAQIILQGLGYKPGREDG--YFDKVTESSVMAFQKEAKLTANGIIDA 448 Query: 160 STLEAMNVPVDLRIR------QLQVNLMRIK 184 T AM + +IR QL+ + I+ Sbjct: 449 KTAAAMEAKLIEKIRDPKNDNQLKQGIEEIR 479 >gi|328880760|emb|CCA53999.1| hypothetical protein SVEN_0712 [Streptomyces venezuelae ATCC 10712] Length = 134 Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 9/83 (10%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA---FDAYVESAVKLFQ 146 + WP +P L G+ V+ L+ LI + +D + ++ F E+AV FQ Sbjct: 48 AYNDWP-VPAVDLARGSRGDCVRALQWALIRTNFVDSADVMTFIDGDFGPKTEAAVLRFQ 106 Query: 147 MRH----GLDPSGMVDSSTLEAM 165 R+ G P G+V T + Sbjct: 107 SRYPRETG-GPDGIVGIKTWGYL 128 >gi|262275011|ref|ZP_06052822.1| general secretion pathway protein A/general secretion pathway protein B [Grimontia hollisae CIP 101886] gi|262221574|gb|EEY72888.1| general secretion pathway protein A/general secretion pathway protein B [Grimontia hollisae CIP 101886] Length = 755 Score = 48.3 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%) Query: 102 LHLGNSSVSVQRLRERL-IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + G V+ L +RL ++ GD P +S F V+ FQ GLD G+ + Sbjct: 483 IKFGQRGERVRWLDQRLNLVLGDTTP---VSDIFGQAQRVKVREFQRSKGLDADGIPGAM 539 Query: 161 TLEAM 165 T + Sbjct: 540 TFMVL 544 >gi|323947583|gb|EGB43587.1| ykud domain-containing protein [Escherichia coli H120] Length = 301 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 73 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 131 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 132 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 156 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 157 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 203 >gi|218700385|ref|YP_002408014.1| hypothetical protein ECIAI39_2047 [Escherichia coli IAI39] gi|218370371|emb|CAR18174.1| conserved hypothetical protein [Escherichia coli IAI39] Length = 320 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 92 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 151 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 175 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 176 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|332759475|gb|EGJ89783.1| lysM domain protein [Shigella flexneri 2747-71] Length = 301 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 73 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 131 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 132 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 156 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 157 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 203 >gi|300816815|ref|ZP_07097035.1| LysM domain protein [Escherichia coli MS 107-1] gi|300530589|gb|EFK51651.1| LysM domain protein [Escherichia coli MS 107-1] Length = 319 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|154509521|ref|ZP_02045163.1| hypothetical protein ACTODO_02053 [Actinomyces odontolyticus ATCC 17982] gi|153799155|gb|EDN81575.1| hypothetical protein ACTODO_02053 [Actinomyces odontolyticus ATCC 17982] Length = 513 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G + V+ + RL + + DA +AVK FQ R GL +G+VD Sbjct: 290 TNTLTWGMNGTKVRIAQVRLGLW-----HSNKLASVDAPFVAAVKNFQQRAGLPVTGVVD 344 Query: 159 SSTLEAMNVPVDLRIRQ 175 +T +AM+ + Q Sbjct: 345 KATWDAMDTGYPWTVDQ 361 >gi|315168921|gb|EFU12938.1| peptidase [Enterococcus faecalis TX1341] Length = 477 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 389 KTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 446 Query: 160 ST 161 T Sbjct: 447 ET 448 >gi|312899528|ref|ZP_07758858.1| peptidase [Enterococcus faecalis TX0470] gi|311293398|gb|EFQ71954.1| peptidase [Enterococcus faecalis TX0470] Length = 480 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 392 KTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 449 Query: 160 ST 161 T Sbjct: 450 ET 451 >gi|312903429|ref|ZP_07762609.1| peptidase [Enterococcus faecalis TX0635] gi|310633305|gb|EFQ16588.1| peptidase [Enterococcus faecalis TX0635] Length = 480 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 392 KTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 449 Query: 160 ST 161 T Sbjct: 450 ET 451 >gi|307277953|ref|ZP_07559037.1| peptidase [Enterococcus faecalis TX0860] gi|306505350|gb|EFM74536.1| peptidase [Enterococcus faecalis TX0860] Length = 477 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 389 KTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 446 Query: 160 ST 161 T Sbjct: 447 ET 448 >gi|282897482|ref|ZP_06305483.1| Peptidoglycan-binding domain protein 1 [Raphidiopsis brookii D9] gi|281197577|gb|EFA72472.1| Peptidoglycan-binding domain protein 1 [Raphidiopsis brookii D9] Length = 319 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 8/33 (24%), Positives = 18/33 (54%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + E+A+K +Q ++GL G++ +T + Sbjct: 285 IYGRQTEAAIKRYQQQNGLTADGIIGPATWGKL 317 Score = 37.9 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 11/95 (11%) Query: 92 GGWPELPIRPLH--LGNSSV------SVQRLRERLIISG--DLDPSKGLSVAFD-AYVES 140 G P P++P+ G+ S+ RL++ L D + F S Sbjct: 168 GKLPTTPVKPVEDVTGDQDTKENKDTSILRLQKALNQLKITDRNNRPLTEDNFTGPATSS 227 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 AV+ FQ G+ P+GM +T +A+N + R Q Sbjct: 228 AVEKFQRVVGIIPTGMATQTTWDAINQILAKRTVQ 262 >gi|257089995|ref|ZP_05584356.1| predicted protein [Enterococcus faecalis CH188] gi|256998807|gb|EEU85327.1| predicted protein [Enterococcus faecalis CH188] Length = 480 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 392 KTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 449 Query: 160 ST 161 T Sbjct: 450 ET 451 >gi|256853236|ref|ZP_05558606.1| carboxyl-terminal protease [Enterococcus faecalis T8] gi|256711695|gb|EEU26733.1| carboxyl-terminal protease [Enterococcus faecalis T8] gi|315029270|gb|EFT41202.1| peptidase [Enterococcus faecalis TX4000] Length = 480 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 392 KTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 449 Query: 160 ST 161 T Sbjct: 450 ET 451 >gi|256619174|ref|ZP_05476020.1| carboxyl-terminal protease [Enterococcus faecalis ATCC 4200] gi|256598701|gb|EEU17877.1| carboxyl-terminal protease [Enterococcus faecalis ATCC 4200] Length = 480 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 392 KTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 449 Query: 160 ST 161 T Sbjct: 450 ET 451 >gi|255975735|ref|ZP_05426321.1| carboxyl-terminal protease [Enterococcus faecalis T2] gi|255968607|gb|EET99229.1| carboxyl-terminal protease [Enterococcus faecalis T2] Length = 480 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 392 KTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 449 Query: 160 ST 161 T Sbjct: 450 ET 451 >gi|300860306|ref|ZP_07106393.1| peptidase, S41 family [Enterococcus faecalis TUSoD Ef11] gi|307275859|ref|ZP_07556998.1| peptidase [Enterococcus faecalis TX2134] gi|300849345|gb|EFK77095.1| peptidase, S41 family [Enterococcus faecalis TUSoD Ef11] gi|306507551|gb|EFM76682.1| peptidase [Enterococcus faecalis TX2134] gi|315031956|gb|EFT43888.1| peptidase [Enterococcus faecalis TX0017] gi|315577763|gb|EFU89954.1| peptidase [Enterococcus faecalis TX0630] Length = 477 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 389 KTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 446 Query: 160 ST 161 T Sbjct: 447 ET 448 >gi|229545708|ref|ZP_04434433.1| S41A family carboxy-terminal peptidase [Enterococcus faecalis TX1322] gi|307291882|ref|ZP_07571753.1| peptidase [Enterococcus faecalis TX0411] gi|229309158|gb|EEN75145.1| S41A family carboxy-terminal peptidase [Enterococcus faecalis TX1322] gi|306497148|gb|EFM66694.1| peptidase [Enterococcus faecalis TX0411] Length = 477 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 389 KTLKEGDQSEDIQNLNAILAVLAY--PIDENNANYTAETKAAVSDLQQKNGLPVTGEIDN 446 Query: 160 ST 161 T Sbjct: 447 ET 448 >gi|311747003|ref|ZP_07720788.1| putative peptidoglycan binding domain protein [Algoriphagus sp. PR1] gi|126578703|gb|EAZ82867.1| putative peptidoglycan binding domain protein [Algoriphagus sp. PR1] Length = 274 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + +V L+E L G S S FD ++AVK FQ +H L G V T Sbjct: 5 KYRSRGAAVSFLQELLNKVGY---SLNPSGYFDLTTDAAVKDFQQKHDLVVDGKVGVKTW 61 Query: 163 EAM 165 + Sbjct: 62 TIL 64 >gi|265766267|ref|ZP_06094308.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263253935|gb|EEZ25400.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 264 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ + LG L L +G S S F ++ AV FQ ++ LD G+V Sbjct: 1 MKTIKLGYEGEEALLLCRELKRNGY---SVKESRTFTQEMKEAVIDFQQKNKLDADGIVG 57 Query: 159 SSTLEAM 165 T E + Sbjct: 58 YRTWEVL 64 >gi|53714241|ref|YP_100233.1| putative phage-related protein [Bacteroides fragilis YCH46] gi|60682298|ref|YP_212442.1| putative phage-related protein [Bacteroides fragilis NCTC 9343] gi|52217106|dbj|BAD49699.1| putative phage-related protein [Bacteroides fragilis YCH46] gi|60493732|emb|CAH08521.1| putative phage-related protein [Bacteroides fragilis NCTC 9343] gi|301163771|emb|CBW23326.1| putative phage-related protein [Bacteroides fragilis 638R] Length = 264 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ + LG L L +G S S F ++ AV FQ ++ LD G+V Sbjct: 1 MKTIKLGYEGEEALLLCRELKRNGY---SVKESRTFTQEMKEAVIDFQQKNKLDADGIVG 57 Query: 159 SSTLEAM 165 T E + Sbjct: 58 YRTWEVL 64 >gi|304438000|ref|ZP_07397944.1| LysM domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368954|gb|EFM22635.1| LysM domain protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 256 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 8/106 (7%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G +V+ ++E LI G L + A++ Q H L G+ +T Sbjct: 79 KEGMRGGAVKHVQELLIQGGYLAGAADGIAG--PMTREAIERCQAAHQLTVDGICGEATY 136 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQ--KMGLRYVLVNIPAASLE 206 A++ D L + R Q + G R V V+ A S Sbjct: 137 HALSGGADYDPAALGIVEER----PPQVSRGGGRSVYVSATAYSAY 178 >gi|229816539|ref|ZP_04446838.1| hypothetical protein COLINT_03592 [Collinsella intestinalis DSM 13280] gi|229807874|gb|EEP43677.1| hypothetical protein COLINT_03592 [Collinsella intestinalis DSM 13280] Length = 302 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 21/101 (20%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDL-DPSKGLSVAFDAYVESAVKLFQMRHGLDP---- 153 + P+ G +V+ ++ RL G + D ++ + F A +AV+ F+ + GLD Sbjct: 1 MEPISQGMQGPAVEDVQTRLSSLGYMIDAAEMTAKEFGATTAAAVRAFRAQQGLDAGEDV 60 Query: 154 SG-----------MVDSSTLEAMNVP----VDLRIRQLQVN 179 G + TL + +P D+R Q +N Sbjct: 61 DGTCWSALVDESYKLGDRTLY-LRLPNFHGADVRALQRALN 100 Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 12/84 (14%) Query: 94 WPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W L LG+ V+ L+ L G F + E+A++ Sbjct: 65 WSALVDESYKLGDRTLYLRLPNFHGADVRALQRALNTLGFACGVDDG--YFGPHTEAALQ 122 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNV 167 FQ GL GM T +N Sbjct: 123 QFQENVGLFADGMAFQDTFNYVNR 146 >gi|78224668|ref|YP_386415.1| ErfK/YbiS/YcfS/YnhG [Geobacter metallireducens GS-15] gi|78195923|gb|ABB33690.1| ErfK/YbiS/YcfS/YnhG [Geobacter metallireducens GS-15] Length = 482 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 3/66 (4%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGL---RSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 R ++VN+ L + L V VG +R TP +R+ R P W Sbjct: 163 PDTPRRGIVVNVATMRLFQYKGDGASLAVSTYPVGVGTKERPTPTGPTRVYRKAARPTWH 222 Query: 246 IPRSII 251 +P SI Sbjct: 223 VPASIA 228 >gi|170768032|ref|ZP_02902485.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia albertii TW07627] gi|170122798|gb|EDS91729.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia albertii TW07627] Length = 320 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNAVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|329903586|ref|ZP_08273559.1| General secretion pathway protein A [Oxalobacteraceae bacterium IMCC9480] gi|327548281|gb|EGF32975.1| General secretion pathway protein A [Oxalobacteraceae bacterium IMCC9480] Length = 530 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 4/69 (5%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 P+ G L +L + D P+ D V+ FQ+ GL P G+ Sbjct: 450 PVSAGAQGPVSDWLAAQLAVI-DGSPAPPAGKPVDEAR---VRRFQLMQGLKPDGIAGPQ 505 Query: 161 TLEAMNVPV 169 TL + Sbjct: 506 TLMRLASTA 514 >gi|323967054|gb|EGB62480.1| ykud domain-containing protein [Escherichia coli M863] gi|323976514|gb|EGB71602.1| ykud domain-containing protein [Escherichia coli TW10509] gi|327253512|gb|EGE65150.1| lysM domain protein [Escherichia coli STEC_7v] Length = 319 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|226311326|ref|YP_002771220.1| hypothetical protein BBR47_17390 [Brevibacillus brevis NBRC 100599] gi|226094274|dbj|BAH42716.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 368 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 1/84 (1%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 + + + L G + V + + L D + +++Y VK FQ ++ Sbjct: 23 QPAFAKTSFTSLKKGMKNSRVLEVEKMLDAL-HYDYKLVVDKTYNSYTVYNVKAFQKKYK 81 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIR 174 L +G+V+ +T + + R + Sbjct: 82 LPQTGIVNKTTYDKLTSVYQARKQ 105 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 39/106 (36%), Gaps = 19/106 (17%) Query: 83 AFYQDILSRGGWPELPIRP-----------LHLGNSSVSVQRLRERLIISGDLDPSKGLS 131 A Q ++ P P +P L LG S V+ L+ L G S Sbjct: 102 ARKQVQPTQPAQPSTPSKPSTPAESNDYATLKLGASGERVKELQTMLAGLGY---KVTAS 158 Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-----NVPVDLR 172 FD AV LFQ R+ +G D+ T A+ N PV + Sbjct: 159 GQFDESTRFAVMLFQSRNKQTLTGEADTKTYTAIQTQYKNNPVQPK 204 >gi|150388378|ref|YP_001318427.1| peptidoglycan binding domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149948240|gb|ABR46768.1| Peptidoglycan-binding domain 1 protein [Alkaliphilus metalliredigens QYMF] Length = 320 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+ V+RL +RL+ DP + F + AV FQ + G+V T Sbjct: 130 LRVGSRGPDVERL-QRLLRDNGYDPGP-IDGIFGTRTQLAVIAFQRDLNIVADGIVGPRT 187 Query: 162 LEAMNV 167 + V Sbjct: 188 WTGLGV 193 >gi|116624466|ref|YP_826622.1| peptidoglycan binding domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116227628|gb|ABJ86337.1| Peptidoglycan-binding domain 1 protein [Candidatus Solibacter usitatus Ellin6076] Length = 262 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 15/77 (19%) Query: 96 ELPIRPLHLGNSS-VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR------ 148 P + G+ SV +++RL ++ D F A + AV+LFQ R Sbjct: 10 AFPGHVVKAGSDDKASVLAIQQRLNLTQD--------GVFSAETQEAVQLFQARSLDFQD 61 Query: 149 HGLDPSGMVDSSTLEAM 165 H L G V T A+ Sbjct: 62 HPLTVDGQVGPMTWAAL 78 >gi|282911000|ref|ZP_06318802.1| peptidase [Staphylococcus aureus subsp. aureus WBG10049] gi|282324695|gb|EFB55005.1| peptidase [Staphylococcus aureus subsp. aureus WBG10049] Length = 496 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G S FD +E+ VK FQ + L+ +G + Sbjct: 409 TKTFIVGDDDKNIKTIKIGLSALGY--KVDNESTQFDQALENLVKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|283784906|ref|YP_003364771.1| peptidoglycan-binding protein [Citrobacter rodentium ICC168] gi|282948360|emb|CBG87946.1| putative peptidoglycan-binding protein [Citrobacter rodentium ICC168] Length = 320 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 55/172 (31%), Gaps = 43/172 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKV-GLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL + +++N+ L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DVPREGIVINLAELRLYYYPPGKDSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTYM-HDTPEPILFNNVVRFETSGCVRVRNII 350 G N M I + Y+ H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRDAD 223 >gi|169827478|ref|YP_001697636.1| spore cortex-lytic enzyme (SCLE) [Lysinibacillus sphaericus C3-41] gi|168991966|gb|ACA39506.1| Spore cortex-lytic enzyme precursor (SCLE) [Lysinibacillus sphaericus C3-41] Length = 277 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G V L+ RL G ++ Y A++ FQ ++GL G+ + T Sbjct: 32 ITRGAYGDDVIELQARLQYLGFYKSKIDGKFGYNTY--WALRNFQEKYGLPVDGIAGAKT 89 >gi|15807153|ref|NP_295882.1| hypothetical protein DR_2159 [Deinococcus radiodurans R1] gi|6459963|gb|AAF11713.1|AE002049_18 hypothetical protein DR_2159 [Deinococcus radiodurans R1] Length = 255 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + V++L+ RL+ +DP KG F E+ V +FQ+ +GL P+G+VD +T Sbjct: 172 TPRMNGADVKQLQLRLMDRSHVDPGKGGDGWFGPVTEANVIVFQLANGLKPTGVVDRATW 231 Query: 163 EAM 165 + Sbjct: 232 TTL 234 >gi|295839236|ref|ZP_06826169.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|295827362|gb|EFG65354.1| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 238 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS-G 155 + L G+S V L+ERL + G G S FD + A+ +Q+ G G Sbjct: 162 VAAPVLRRGDSGPEVGELKERLRLVGIYPGGDGDS--FDRTLAYALTTYQITRGARDEHG 219 Query: 156 MVDSSTLEAM 165 + S T + Sbjct: 220 VYGSDTRTKL 229 >gi|187730975|ref|YP_001880717.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Shigella boydii CDC 3083-94] gi|187427967|gb|ACD07241.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Shigella boydii CDC 3083-94] Length = 320 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 53/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 92 LQTLLP-DAPREGIVINIAELRLYYYPTGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +Y K I + Sbjct: 151 ANPTWT-----------PTANTRARY-KAQGIEL-----------------------PAV 175 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 176 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|126653377|ref|ZP_01725481.1| sporulation specific N-acetylmuramoyl-L-alanine amidase (spore cortex-lytic enzyme) [Bacillus sp. B14905] gi|126589893|gb|EAZ84024.1| sporulation specific N-acetylmuramoyl-L-alanine amidase (spore cortex-lytic enzyme) [Bacillus sp. B14905] Length = 277 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G V L+ RL G ++ Y A++ FQ ++GL G+ + T Sbjct: 32 ITRGAYGDDVIELQARLQYLGFYKSKIDGKFGYNTY--WALRNFQEKYGLPVDGIAGAKT 89 >gi|332968505|gb|EGK07568.1| ErfK/YbiS/YcfS/YnhG family protein [Psychrobacter sp. 1501(2011)] Length = 369 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 91/245 (37%), Gaps = 39/245 (15%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN---LMRIKK 185 + F V A++ FQ ++GL +G +DS T + + + + VN Sbjct: 128 AVDGRFGENVVKALQAFQEKNGLQVTGDIDSETWNKLTEDSTINEQPVLVNYTLTDEDVT 187 Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG---RVDRQTPILHSRINRIMFNP 242 L+ G ++ + LEAV + G R++ T + +++NP Sbjct: 188 LISNPKGQQF------ESVLEAV---AEKFHMS--QGLLLRLNADT-SFEAGNTIVVYNP 235 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI-------------DEKGKEVFVEEVDWN 289 Y P +I ++A+ ++ Y D N ++ G+ + + Sbjct: 236 Y--QPNAIPVHRVVAVKSKNLLYAYDENDTLVASYPTTMGSVYKPSPNGEYKVLSRIKDP 293 Query: 290 SPEP--PNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 + N PG N + I ++ + +H +P P + R +SGCVR+ Sbjct: 294 TYNKDFKNPKTALPPGPNNPVGRVWIGI-NKRSYGIHGSPNP---ERISRQNSSGCVRLT 349 Query: 348 NIIDL 352 N L Sbjct: 350 NWDAL 354 >gi|213586771|ref|ZP_03368597.1| hypothetical protein SentesTyph_38025 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 257 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 39/124 (31%), Gaps = 33/124 (26%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y +L P+ +IN+ ++ + Sbjct: 158 MMGYLHFIANIPVKGQRWLYSNKPY-------ALATPPV------SVINQWQIALEEGQL 204 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP-IRPLHLGNSSVSV 111 F+A + A A+ + WP+L L G S V Sbjct: 205 PMFVASLAPQ---------HPQYAPMHDALLKL--VADSRPWPQLTNTATLRPGQWSNDV 253 Query: 112 QRLR 115 LR Sbjct: 254 PALR 257 >gi|85374415|ref|YP_458477.1| putative bacteriophage-acquired protein [Erythrobacter litoralis HTCC2594] gi|84787498|gb|ABC63680.1| putative bacteriophage-acquired protein [Erythrobacter litoralis HTCC2594] Length = 343 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 8/68 (11%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P R + +G+ SV L+E L ++ D D F +SAV FQ + L P G+V Sbjct: 201 PQRVIRMGDKGQSVMHLQELLGLTKDGD--------FGPGTKSAVIKFQKKAKLHPDGIV 252 Query: 158 DSSTLEAM 165 T A+ Sbjct: 253 GGQTWAAL 260 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 14/80 (17%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 QD+ R PL L + V+ L++ L + D D F + VK F Sbjct: 275 QDLAQR------SRAPLRLHDKGDDVKFLQKLLGLIEDGD--------FGPATLARVKKF 320 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q +GL G+V +T + Sbjct: 321 QQENGLVDDGIVGRNTWARL 340 >gi|332665190|ref|YP_004447978.1| peptidoglycan-binding domain 1 protein [Haliscomenobacter hydrossis DSM 1100] gi|332334004|gb|AEE51105.1| Peptidoglycan-binding domain 1 protein [Haliscomenobacter hydrossis DSM 1100] Length = 363 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ L L +S +V L+ L G + F + VK FQ +H L G+V Sbjct: 1 MQTLKLDSSGHAVIVLQHFLKTIG---QPISVDGEFGPKTLAQVKAFQSKHKLRADGVVG 57 Query: 159 SSTLEAM 165 T + Sbjct: 58 PKTWSLL 64 >gi|284046149|ref|YP_003396489.1| peptidoglycan-binding protein [Conexibacter woesei DSM 14684] gi|283950370|gb|ADB53114.1| Peptidoglycan-binding domain 1 protein [Conexibacter woesei DSM 14684] Length = 329 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G S V+ L++ L +G S + F + + VK FQ L +G+VD+ Sbjct: 111 RVLKKGMSGQDVRVLQDYLNRAGF---STTIDGQFGSGTQRLVKRFQQAQELTVTGIVDA 167 Query: 160 STLEAM 165 +T+ A+ Sbjct: 168 ATVTAL 173 Score = 37.1 bits (85), Expect = 5.6, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 3/77 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L R L G S V+ L++ L +G P G F VK F+ ++ L G Sbjct: 16 ALGRRTLKQGMSGQDVRVLQDFLTRAGFTTPVGGD---FGPITLGNVKKFEKQYRLTVDG 72 Query: 156 MVDSSTLEAMNVPVDLR 172 + DS+ + + D R Sbjct: 73 IADSAFVTKLREVADPR 89 >gi|255640072|gb|ACU20327.1| unknown [Glycine max] Length = 305 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 H G + + ++ G + + FD + SA+K +Q + L+ +G D + Sbjct: 44 TYHPGQNYKGLSNVKNYFHHLGYIPNAPHFDDNFDDTLVSAIKTYQKNYNLNVTGKFDIN 103 Query: 161 TLEAMNVP 168 TL+ + P Sbjct: 104 TLKQIMTP 111 >gi|333004925|gb|EGK24445.1| lysM domain protein [Shigella flexneri VA-6] Length = 229 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 50/164 (30%), Gaps = 42/164 (25%) Query: 189 QKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWV 245 +++NI L GK + +G++ D TP + + ++ NP W Sbjct: 96 PDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWT 155 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 +I + K I + G Sbjct: 156 PTANIRAR------------YKAQGIEL-----------------------PAVVPAGPD 180 Query: 306 NAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 N M I + Y +H T F +R +SGC+R+R+ Sbjct: 181 NPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|295096070|emb|CBK85160.1| Uncharacterized protein conserved in bacteria [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 337 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 56/172 (32%), Gaps = 40/172 (23%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L ++VN+ L G+ + + +G++ +TP+ +R+++ + NP W Sbjct: 89 MLLPDTEREGIVVNLAELRLYFYPPGENIVQVYPLGIGQLGLETPVSTTRVSQKIPNPTW 148 Query: 245 VIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGK 304 I + + I + G Sbjct: 149 TPTAGIRARSL------------AQGIKL-----------------------PPVVPAGP 173 Query: 305 INAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 174 NNPLGRFALRLGIGNGEYLIHGTSAP---DSVGLRVSSGCMRMNAPDIKALF 222 >gi|288549505|ref|ZP_05967273.2| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Enterobacter cancerogenus ATCC 35316] gi|288318218|gb|EFC57156.1| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Enterobacter cancerogenus ATCC 35316] Length = 323 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L GK + +G++ D TP + + ++ Sbjct: 94 LQTLLP-DAPREGIVINLAELRLYYYPPGKNEVTVYPIGIGQLGGDTLTPTMVTTVSDKR 152 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 153 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 177 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 178 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 224 >gi|186682970|ref|YP_001866166.1| cell wall hydrolase/autolysin [Nostoc punctiforme PCC 73102] gi|186465422|gb|ACC81223.1| cell wall hydrolase/autolysin [Nostoc punctiforme PCC 73102] Length = 313 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 21/103 (20%) Query: 76 AQTEKAIAFYQDI--------LSRGGWPEL----PIRPLHLGNSSVSVQR-LRERLIISG 122 A T+ A+ +Q I W + R + ++ +V R L+ RL + Sbjct: 217 ANTKSAVEKFQAIIGVQTTGIADSTTWNAINLILAKRIIRPNHAGGAVVRYLQYRLGVEN 276 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 D + E VK FQ ++GLD G+V ++ + + Sbjct: 277 D--------GVYGPQTEVVVKNFQKQNGLDADGIVGPASWQKL 311 >gi|321311605|ref|YP_004203892.1| carboxy-terminal processing protease [Bacillus subtilis BSn5] gi|320017879|gb|ADV92865.1| carboxy-terminal processing protease [Bacillus subtilis BSn5] Length = 466 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 10/107 (9%) Query: 76 AQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 Q + + Y + P L + G++ +V+ ++ L G ++ + Sbjct: 359 PQVKAELPDYAKL------PYLDADKTYKSGDTGTNVKVAQKMLKALGY---KVKVNSTY 409 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 D S VK FQ + L+ +G++ T + + + ++ + Sbjct: 410 DQDFVSVVKQFQKKEKLNETGILTGDTTTKLMIELQKKLSDNDTQME 456 >gi|159898673|ref|YP_001544920.1| N-acetylmuramoyl-L-alanine amidase [Herpetosiphon aurantiacus ATCC 23779] gi|159891712|gb|ABX04792.1| N-acetylmuramoyl-L-alanine amidase family 2 [Herpetosiphon aurantiacus ATCC 23779] Length = 356 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 7/72 (9%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L G + LR R + AF E+AVK FQ +GL Sbjct: 226 WPILRRNTPATGLAKTMQYLLRAR-------GATITADGAFGPGTETAVKSFQTANGLTS 278 Query: 154 SGMVDSSTLEAM 165 G+V ++T E + Sbjct: 279 DGVVGAATWEKL 290 Score = 44.1 bits (103), Expect = 0.046, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W +L I L G++ +V+ L+ +L + + +F V + V+ FQ L Sbjct: 287 WEKL-IMTLRSGDTGEAVKALQNQLTVQSY---PTTIDGSFGTGVNTLVRAFQTNRQLTV 342 Query: 154 SGMVD 158 G+V Sbjct: 343 DGVVG 347 >gi|291483763|dbj|BAI84838.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. natto BEST195] Length = 317 Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 7/77 (9%) Query: 96 ELPIRPLHLGN---SSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMR 148 LP + + + V++++ L + G+ + +AVK FQ Sbjct: 237 PLPSGVIKVTSPLTKGTKVKQVQTALAALYFYPDKGAKNHGVDGVYGPKTANAVKRFQSV 296 Query: 149 HGLDPSGMVDSSTLEAM 165 GL G+ T + Sbjct: 297 SGLTADGIYGPKTKAKL 313 >gi|297196973|ref|ZP_06914370.1| peptidoglycan binding domain-containing protein [Streptomyces sviceus ATCC 29083] gi|197717507|gb|EDY61541.1| peptidoglycan binding domain-containing protein [Streptomyces sviceus ATCC 29083] Length = 250 Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + V+ ++ RL G P + F + +A + FQ +GL G+V + T Sbjct: 184 KTGTVAEGVKNIQRRLNELG-WSPPLDVDGKFGPHSAAAARWFQTNNGLTADGIVGNQTW 242 Query: 163 EAM 165 + Sbjct: 243 RRL 245 >gi|16078311|ref|NP_389128.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|221309095|ref|ZP_03590942.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|221313422|ref|ZP_03595227.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318345|ref|ZP_03599639.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322618|ref|ZP_03603912.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. SMY] gi|321314988|ref|YP_004207275.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis BSn5] gi|45477245|sp|O34391|XLYB_BACSU RecName: Full=N-acetylmuramoyl-L-alanine amidase XlyB; AltName: Full=Autolysin; AltName: Full=Cell wall hydrolase; Flags: Precursor gi|2633600|emb|CAB13103.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus subtilis subsp. subtilis str. 168] gi|2645866|gb|AAB87514.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|320021262|gb|ADV96248.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus subtilis BSn5] Length = 317 Score = 47.9 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 7/77 (9%) Query: 96 ELPIRPLHLGN---SSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMR 148 LP + + + V++++ L + G+ + +AVK FQ Sbjct: 237 PLPSGVIKVTSPLTQGTKVKQVQTALAALYFYPDKGAKNHGVDGVYGPKTANAVKRFQSV 296 Query: 149 HGLDPSGMVDSSTLEAM 165 GL G+ T M Sbjct: 297 SGLTADGIYGPKTKAKM 313 >gi|2827777|sp|P29136|MEP1_SOYBN RecName: Full=Metalloendoproteinase 1; AltName: Full=SMEP1; Flags: Precursor gi|1679656|gb|AAB26959.1| metalloproteinase [Glycine max] Length = 305 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 H G + + ++ G + + FD + SA+K +Q + L+ +G D + Sbjct: 44 TYHPGQNYKGLSNVKNYFHHLGYIPNAPHFDDNFDDTLVSAIKTYQKNYNLNVTGKFDIN 103 Query: 161 TLEAMNVP 168 TL+ + P Sbjct: 104 TLKQIMTP 111 >gi|258512822|ref|YP_003186256.1| ErfK/YbiS/YcfS/YnhG family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479548|gb|ACV59867.1| ErfK/YbiS/YcfS/YnhG family protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 339 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 20/95 (21%) Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMN--VPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 E AV F+ +H L G+ + A++ + R Q+ Y+ Sbjct: 173 EGAVMAFESQHHLAVDGIAGPDVIHALSEALAAGERAPQV---------------PYSYI 217 Query: 197 LV--NIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 LV ++P +LE NGK+ L S G TP Sbjct: 218 LVTTSLPE-TLELWVNGKLVLTSLCNTGIPQAPTP 251 >gi|149921154|ref|ZP_01909612.1| hypothetical protein PPSIR1_24989 [Plesiocystis pacifica SIR-1] gi|149818041|gb|EDM77500.1| hypothetical protein PPSIR1_24989 [Plesiocystis pacifica SIR-1] Length = 335 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 20/39 (51%) Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ A++ AVK +Q RHGL GMV + T + Sbjct: 31 GTSVTGAWNDETVEAVKQWQGRHGLKADGMVGAGTYATL 69 >gi|297804516|ref|XP_002870142.1| hypothetical protein ARALYDRAFT_493212 [Arabidopsis lyrata subsp. lyrata] gi|297315978|gb|EFH46401.1| hypothetical protein ARALYDRAFT_493212 [Arabidopsis lyrata subsp. lyrata] Length = 362 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDL-DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +G+ V L+ L G + D S+ S FD +ESA+ L+Q GL +G +D+ST Sbjct: 61 QIGSHVNGVSELKRYLHRFGYVNDGSESFSDVFDGPLESAISLYQENLGLPITGRLDTST 120 Query: 162 LEAMNVP 168 + M++P Sbjct: 121 VSLMSLP 127 >gi|223984153|ref|ZP_03634304.1| hypothetical protein HOLDEFILI_01597 [Holdemania filiformis DSM 12042] gi|223963885|gb|EEF68246.1| hypothetical protein HOLDEFILI_01597 [Holdemania filiformis DSM 12042] Length = 171 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL G++ + VQ+++ L F A E+ V FQ H L P G + Sbjct: 102 PLEYGDTGLEVQKMQNYLNKLTLPSTPITADGVFGAKTEAKVIAFQNAHSLTPDGKIGEK 161 Query: 161 TL 162 T Sbjct: 162 TW 163 Score = 41.4 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 8/78 (10%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQ 146 +GG+ + + G + ++V++++ L + DL P +F + E+AV +FQ Sbjct: 2 KGGFTHMAY-VIRRGYTGLAVKKMQHYLNVLRTSYPDL-PVLKEDGSFGSATENAVMIFQ 59 Query: 147 MRHGLDPSGMVDSSTLEA 164 GL G++ TL Sbjct: 60 KHTGLTADGIIG--TLTW 75 >gi|254424824|ref|ZP_05038542.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] gi|196192313|gb|EDX87277.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] Length = 339 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 18/117 (15%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G++ SV L+ERL G + + + V+ +Q L +G D Sbjct: 198 TLAPGSTGSSVIALQERLNNFG---IPVFVDGTYGFETQQGVRTYQRLQRLPVTGTADRR 254 Query: 161 TLEAMNVPVDLR-----IRQLQV---NLMRIKKLLE-----QKMGLRYVLVNIPAAS 204 TL +M V + I + L I++L ++ G R++ NI + Sbjct: 255 TLSSMGFSVSSKPIRPYISAVIADESALDSIRELFPEAYVDRERGGRFI--NIGSFE 309 Score = 41.7 bits (97), Expect = 0.23, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 2/69 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L R L G+ V+ L+ L +G + V +Q L +G+ Sbjct: 55 LTRRALRRGDIGEDVRALQLYLSQNGLFPYQADG--IYGQETVDGVVTYQRIRDLPATGI 112 Query: 157 VDSSTLEAM 165 D TL M Sbjct: 113 ADEETLRDM 121 >gi|302532770|ref|ZP_07285112.1| predicted protein [Streptomyces sp. C] gi|302441665|gb|EFL13481.1| predicted protein [Streptomyces sp. C] Length = 138 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+S V L+ L LD GL + A E+AV+ Q R+GL G+ ST Sbjct: 62 GSSGDHVLALQHALQGCQGLDTG-GLDGIYGAKTEAAVRTLQSRNGLSVDGVYGPSTRN 119 >gi|163855444|ref|YP_001629742.1| peptidoglycan binding-like domain-containing protein [Bordetella petrii DSM 12804] gi|163259172|emb|CAP41472.1| protein with peptidoglycan binding-like domain [Bordetella petrii] Length = 270 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 5/115 (4%) Query: 51 RFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVS 110 R + + P + A T A + I G + L S Sbjct: 83 RLTSARTTASEAAAAQTPGPAARHSAPTGAQAATLRAIGGSGSLTQ----ELRYRVKSPQ 138 Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V+ L+ RL ++ L + F AV FQ +G +GMVD T + + Sbjct: 139 VRELQVRLRLAKYLALYD-VDDRFGMLTREAVLKFQRDNGFRATGMVDQQTWDTL 192 >gi|111225991|ref|YP_716785.1| N-acetylmuramoyl-L-alanine amidase [Frankia alni ACN14a] gi|111153523|emb|CAJ65280.1| N-acetylmuramoyl-L-alanine amidase (Autolysin) [Frankia alni ACN14a] Length = 233 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +G V+ + R+ G G F +A + FQ HGL G+V +T Sbjct: 173 VGQDRADVRAWQTRMSQLGYPIAVDG---HFGPRSAAAARSFQGSHGLAVDGIVGPATWH 229 Query: 164 A 164 A Sbjct: 230 A 230 >gi|329894374|ref|ZP_08270244.1| general secretion pathway protein A [gamma proteobacterium IMCC3088] gi|328923170|gb|EGG30493.1| general secretion pathway protein A [gamma proteobacterium IMCC3088] Length = 121 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 1/69 (1%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 LG+ + V + +R D F + V FQ GL GMV TL Sbjct: 41 LGSIGLDVVDIAQRFGRY-DRTNQVLADEVFTQALHERVIQFQAEQGLTTDGMVGRETLV 99 Query: 164 AMNVPVDLR 172 A+ ++ R Sbjct: 100 ALAAQMNER 108 >gi|256826841|ref|YP_003150800.1| putative peptidoglycan-binding domain-containing protein [Cryptobacterium curtum DSM 15641] gi|256582984|gb|ACU94118.1| putative peptidoglycan-binding domain-containing protein [Cryptobacterium curtum DSM 15641] Length = 303 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 13/90 (14%) Query: 86 QDILSRGGWPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFD 135 +D + W L LG+ V L++ L G + G+ F Sbjct: 58 RDEVDDKVWALLLDATFRLGDRTLYLRMPYFHGNDVAELQQALDALGFATSTDGM---FG 114 Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 A+ E A++LFQM GL G+ S T A+ Sbjct: 115 AHTELALRLFQMNMGLPSDGIAGSFTFRAI 144 >gi|237731095|ref|ZP_04561576.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226906634|gb|EEH92552.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 323 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + G + +G++ D TP + + I+ Sbjct: 94 LQTLLP-DAPREGIVINLAELRLYYYQPGTNSVTVYPIGIGQLGGDTLTPTMVTTISDKR 152 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K N I + Sbjct: 153 ANPTWTPTANIRAR------------YKANGIDL-----------------------PAV 177 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 178 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 224 >gi|257082442|ref|ZP_05576803.1| carboxyl-terminal protease [Enterococcus faecalis E1Sol] gi|256990472|gb|EEU77774.1| carboxyl-terminal protease [Enterococcus faecalis E1Sol] Length = 480 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 392 KTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLPITGEIDN 449 Query: 160 ST 161 T Sbjct: 450 ET 451 >gi|323190465|gb|EFZ75739.1| lysM domain protein [Escherichia coli RN587/1] Length = 319 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPSWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|118485900|gb|ABK94796.1| unknown [Populus trichocarpa] Length = 309 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGL--SVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 G + + L++ L G S FD ++E A+K +Q L+ +G +DSS Sbjct: 47 KKGQTVQGLIELKQYLKKLGYYPSDDITLTSSDFDDHLELALKTYQEYFHLNVTGNLDSS 106 Query: 161 TLEAMNVP 168 T++ M +P Sbjct: 107 TIQQMVIP 114 >gi|323136809|ref|ZP_08071890.1| Peptidoglycan-binding domain 1 protein [Methylocystis sp. ATCC 49242] gi|322398126|gb|EFY00647.1| Peptidoglycan-binding domain 1 protein [Methylocystis sp. ATCC 49242] Length = 155 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 9/80 (11%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERL--IISGDLDPSKGLSVAFDAYVESAVKLFQMR--- 148 W L + G+ V+ L+ L + DP F E+AVK FQ Sbjct: 75 WFRLAPAEVKKGSKGAGVRLLQGILKSFAVPEYDPGAVDGD-FGPTTETAVKAFQADFFD 133 Query: 149 ---HGLDPSGMVDSSTLEAM 165 + L G+V + T A+ Sbjct: 134 FDGNPLKVDGIVGAKTWAAL 153 >gi|150018076|ref|YP_001310330.1| peptidoglycan binding domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149904541|gb|ABR35374.1| Peptidoglycan-binding domain 1 protein [Clostridium beijerinckii NCIMB 8052] Length = 501 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 16/91 (17%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P R L LG+S +V+ ++ +L L P + +AVK FQ L + Sbjct: 385 PGRELTLGSSGPAVRAIQGQLNRIARNYPLIPKIAEDGKYGPKTAAAVKTFQQIFTLPQT 444 Query: 155 GMVDSST-------------LEAMNVPVDLR 172 G+VD +T L +N R Sbjct: 445 GVVDYATWYRISDIYVGVTKLAELNTTESSR 475 >gi|84501438|ref|ZP_00999643.1| hypothetical protein OB2597_13773 [Oceanicola batsensis HTCC2597] gi|84390729|gb|EAQ03217.1| hypothetical protein OB2597_13773 [Oceanicola batsensis HTCC2597] Length = 548 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 12/136 (8%) Query: 32 HASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR 91 A EI + + D + ++ + D+ ++ I + + +D + Sbjct: 420 QAEADAEIRDAWERARSEDTEEAYIRFLRRYPDNAFAGAARSRITELREPP---RDTAA- 475 Query: 92 GGWPELPIRPLHLGNSSVSV--QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 E R G + + + RL G + FDA A++ FQ Sbjct: 476 ----EEAARQQEAGVVNNPITRVLVERRLQQLGFEPGAPDG--RFDAETRRAIRRFQRSR 529 Query: 150 GLDPSGMVDSSTLEAM 165 GL+ +G V +T+ + Sbjct: 530 GLEVTGFVTQATMVRL 545 >gi|307942391|ref|ZP_07657742.1| N-acetylmuramoyl-L-alanine amidase [Roseibium sp. TrichSKD4] gi|307774677|gb|EFO33887.1| N-acetylmuramoyl-L-alanine amidase [Roseibium sp. TrichSKD4] Length = 258 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 3/71 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G++ V R RE L D + FD +E FQ G+ Sbjct: 149 PDGLLRRGDAGPDVHRWREDLGAYRDKIGHPYPVPATGPFDHTLELVTMWFQKERGIQVD 208 Query: 155 GMVDSSTLEAM 165 G+V LE M Sbjct: 209 GIVGPQVLEEM 219 >gi|220927494|ref|YP_002504403.1| spore cortex-lytic enzyme [Clostridium cellulolyticum H10] gi|219997822|gb|ACL74423.1| spore cortex-lytic enzyme [Clostridium cellulolyticum H10] Length = 231 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L +G+ V+ +++ L G D + +D +V +Q ++GL +G+ Sbjct: 30 SAPSLKIGDRGEEVKDMQQELKNWGYFDGNVDGRFGYD--TLRSVLSYQRQYGLKANGIA 87 Query: 158 DSSTL 162 D +TL Sbjct: 88 DRTTL 92 >gi|298694714|gb|ADI97936.1| carboxy-terminal processing proteinase [Staphylococcus aureus subsp. aureus ED133] Length = 496 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + +G+ +++ ++ L G + FD +E+ +K FQ + L+ +G + Sbjct: 409 TKTFKVGDDDKNIKTIKIGLSDLGY--KVDNETTQFDQALENQIKAFQQANKLEVTGEFN 466 Query: 159 SST 161 T Sbjct: 467 KET 469 >gi|47215736|emb|CAG05747.1| unnamed protein product [Tetraodon nigroviridis] Length = 560 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 14/97 (14%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + A + VE+A+K Q +GL +G +D T+EAM P D Sbjct: 3 LQKFGYLPPGDVRAQALRSPKTVETAIKAMQRFYGLSVTGSIDPQTIEAMRRPRCGVPDK 62 Query: 172 RIRQLQVNLMRIK------KLLEQKMGLRYVLVNIPA 202 +L+ NL R + K + ++ RY VN+ Sbjct: 63 FGPELKTNLRRKRFAVQGQKWDKSEVTFRY--VNMAD 97 >gi|254414414|ref|ZP_05028180.1| D-alanyl-D-alanine carboxypeptidase family [Microcoleus chthonoplastes PCC 7420] gi|196178644|gb|EDX73642.1| D-alanyl-D-alanine carboxypeptidase family [Microcoleus chthonoplastes PCC 7420] Length = 881 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 4/73 (5%) Query: 94 WPELPIRPLH-LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 W I L + V+++++ L D G+ F ++AVKLFQ L Sbjct: 292 WQGFEIIKLTSPYMHGIDVRKIQQALA---DAKIDVGVDGVFGPGTQAAVKLFQKARNLI 348 Query: 153 PSGMVDSSTLEAM 165 G+V +TL + Sbjct: 349 TDGVVGPATLVQL 361 >gi|153811479|ref|ZP_01964147.1| hypothetical protein RUMOBE_01871 [Ruminococcus obeum ATCC 29174] gi|149832606|gb|EDM87690.1| hypothetical protein RUMOBE_01871 [Ruminococcus obeum ATCC 29174] Length = 512 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 49/189 (25%), Gaps = 60/189 (31%) Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG---RVDRQTPILHSRINR 237 MR +G Y+ V++ + +NG + +S ++ G DR+T Sbjct: 371 MRANAHGINDLGDTYIEVDLTEQYMWYYQNGNIIFQSEIVSGLPSDPDRKT--------- 421 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 P I + + V E+ N + Sbjct: 422 ---------PPGI--------------------FTLNSKSSPSVLRGEMTAN----GTYS 448 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE---TSGCVRV--RNIIDL 352 + Q HD F R+ + GC+ + N L Sbjct: 449 YEQP---------VTYWMPFNGGIGFHDADWQPYFGGD-RYLTGGSHGCINLPPENAGQL 498 Query: 353 DVWLLKDTP 361 + D P Sbjct: 499 YSLIQYDVP 507 >gi|330830952|ref|YP_004393904.1| LysM domain-containing protein [Aeromonas veronii B565] gi|328806088|gb|AEB51287.1| LysM domain protein [Aeromonas veronii B565] Length = 306 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 42/154 (27%) Query: 196 VLVNIPAASLEAVENGKVGLRS-TVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L GK + + +G++ TP +++ R NP W +I ++ Sbjct: 100 IVINVAEMRLYYYPKGKNVVEVLPIGIGQLGVNTPENWITKVERKRANPTWTPTENIRRR 159 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M + Sbjct: 160 -----------------------------------YAAQGKTLPAVWPAGPDNPMGLHAL 184 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 + H T F +R +SGCVR+R Sbjct: 185 YIGNLYAI--HGTNAT--FGIGLR-VSSGCVRLR 213 >gi|47202237|emb|CAF87535.1| unnamed protein product [Tetraodon nigroviridis] Length = 279 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 14/97 (14%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + A + VE+A+K Q +GL +G +D T+EAM P D Sbjct: 3 LQKFGYLPPGDVRAQALRSPKTVETAIKAMQRFYGLSVTGSIDPQTIEAMRRPRCGVPDK 62 Query: 172 RIRQLQVNLMRIK------KLLEQKMGLRYVLVNIPA 202 +L+ NL R + K + ++ RY VN+ Sbjct: 63 FGPELKTNLRRKRFAVQGQKWDKSEVTFRY--VNMAD 97 >gi|332705083|ref|ZP_08425167.1| Putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332356150|gb|EGJ35606.1| Putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 238 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 6/67 (8%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +P G+ V+ L+E L+ + + F E AVK FQ L G+V Sbjct: 176 TKPYLEGD---DVRELQEALVK---ATITVEVDGVFGPATEEAVKEFQKLKDLTVDGIVG 229 Query: 159 SSTLEAM 165 +T A+ Sbjct: 230 PATRSAL 236 >gi|317124408|ref|YP_004098520.1| peptidoglycan-binding protein [Intrasporangium calvum DSM 43043] gi|315588496|gb|ADU47793.1| Peptidoglycan-binding domain 1 protein [Intrasporangium calvum DSM 43043] Length = 679 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 19/113 (16%) Query: 62 GIDSDIPIISKETIAQTEKAIAFYQ-DILSRGGWPELPIRP----------LHLGNSSVS 110 +D ++++ +A ++++A Q +++ W L R L LG++ Sbjct: 568 AVDGVFGSLTRDKVAALQRSLALPQTGVVTPEVWEVLESREFPFAAHRTTVLRLGDTGPQ 627 Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 V ++ L + + FD +AVK Q R GL +G+V S T Sbjct: 628 VSAVQRVLGV--------RPTGVFDERTRAAVKEAQARAGLASTGVVASRTWS 672 Score = 44.1 bits (103), Expect = 0.046, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 Q++L GWP L +G +S +VQ L+ RL G+L + F + + V + Sbjct: 422 QELLYTKGWPT-TYPTLSVGMTSTAVQNLQARL---GNLP----TTGYFGSMTRARVIEY 473 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q GL +G+ D+ T + + Sbjct: 474 QRFVGLATTGVADNRTQQLL 493 Score = 42.9 bits (100), Expect = 0.089, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 9/82 (10%) Query: 86 QDILSRGGWPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 Q+IL++ GW + L G +S +V+ L+ +L + F + + V Sbjct: 273 QEILAKRGWRTVSAAFPTLSYGMTSSAVRTLQTKLGSL-------PTTGYFGSLTKDRVL 325 Query: 144 LFQMRHGLDPSGMVDSSTLEAM 165 +Q GL +G D T + Sbjct: 326 AYQKFVGLPQTGTADPVTQYRL 347 Score = 39.8 bits (92), Expect = 0.91, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 7/77 (9%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 + GG L +G +S +V+ L+ L G+L + F + ++ V +Q Sbjct: 356 ATSGGGTATTYPTLSIGTTSAAVKNLQAEL---GNLP----TTGYFGSMTQARVTEYQKA 408 Query: 149 HGLDPSGMVDSSTLEAM 165 GL +G+ D +T E + Sbjct: 409 VGLPATGIADQTTQELL 425 >gi|302760259|ref|XP_002963552.1| hypothetical protein SELMODRAFT_404832 [Selaginella moellendorffii] gi|300168820|gb|EFJ35423.1| hypothetical protein SELMODRAFT_404832 [Selaginella moellendorffii] Length = 433 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMV 157 R L G V+ L+E L G + +F + + AVK +Q G G+V Sbjct: 230 ARSLKYGAEGDDVKLLQEALAKLGFYCGDDDMEYASFSSGTDRAVKSWQSSIGAAEDGIV 289 Query: 158 DSSTLEAM 165 + L + Sbjct: 290 TAQVLSQL 297 >gi|302799535|ref|XP_002981526.1| hypothetical protein SELMODRAFT_421058 [Selaginella moellendorffii] gi|300150692|gb|EFJ17341.1| hypothetical protein SELMODRAFT_421058 [Selaginella moellendorffii] Length = 433 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMV 157 R L G V+ L+E L G + +F + + AVK +Q G G+V Sbjct: 230 ARSLKYGAEGDDVKLLQEALAKLGFYCGDDDMEYASFSSGTDRAVKSWQSSIGAAEDGIV 289 Query: 158 DSSTLEAM 165 + L + Sbjct: 290 TAQVLSQL 297 >gi|295110060|emb|CBL24013.1| peptidoglycan transpeptidase precursor, ErfK-YbiS-YhnG family [Ruminococcus obeum A2-162] Length = 502 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 49/189 (25%), Gaps = 60/189 (31%) Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG---RVDRQTPILHSRINR 237 MR +G Y+ V++ + +NG + +S ++ G DR+T Sbjct: 361 MRANAHGINDLGDTYIEVDLTEQYMWYYQNGNIIFQSEIVSGLPSDPDRKT--------- 411 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 P I + + V E+ N + Sbjct: 412 ---------PPGI--------------------FTLNSKSSPSVLRGEMTAN----GTYS 438 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE---TSGCVRV--RNIIDL 352 + Q HD F R+ + GC+ + N L Sbjct: 439 YEQP---------VTYWMPFNGGIGFHDADWQPYFGGD-RYLTGGSHGCINLPPENAGQL 488 Query: 353 DVWLLKDTP 361 + D P Sbjct: 489 YSLIQYDVP 497 >gi|291550822|emb|CBL27084.1| Putative peptidoglycan-binding domain-containing protein [Ruminococcus torques L2-14] Length = 430 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G+ V++++E L +I+G P + E+AV+ FQ GL + Sbjct: 346 PGYTLEQGSQGPKVRQIQEELNVIAGAYPEIPKLTEDGIYGPETEAAVRKFQSIFGLPVT 405 Query: 155 GMVDSSTLE 163 G +D T Sbjct: 406 GEIDYKTWY 414 >gi|282599261|ref|YP_003358573.1| hypothetical protein [Shigella phage phiSboM-AG3] gi|226973567|gb|ACO94320.1| conserved hypothetical phage protein [Shigella phage phiSboM-AG3] Length = 264 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG V+ L++ L G + G F E+AVK Q GL G+V T Sbjct: 4 LKLGTRGSEVKSLQQSLNKIGFTLVADG---IFGKATENAVKTVQAGAGLVIDGIVGPKT 60 Query: 162 LEAM 165 A+ Sbjct: 61 SYAI 64 >gi|259046708|ref|ZP_05737109.1| carboxy-terminal processing peptidase [Granulicatella adiacens ATCC 49175] gi|259036604|gb|EEW37859.1| carboxy-terminal processing peptidase [Granulicatella adiacens ATCC 49175] Length = 497 Score = 47.5 bits (112), Expect = 0.004, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ S +V+ + L G FD+ AVK FQ G+ +G V+ T Sbjct: 415 KEGSVSDNVKTIETILKGLGY---DVKADGYFDSKTTEAVKQFQKSKGISETGEVNEQTG 471 Query: 163 EAM 165 A+ Sbjct: 472 SAL 474 >gi|1402944|emb|CAA66987.1| orfRM1 [Bacillus subtilis] Length = 466 Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 10/107 (9%) Query: 76 AQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 Q + + Y + P L + G++ +V+ ++ L G ++ + Sbjct: 359 PQVKAELPDYAKL------PYLDADKTYKSGDTGTNVKVAQKMLKALGY---KVKVNSMY 409 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 D S VK FQ + L+ +G++ T + + + ++ + Sbjct: 410 DQDFVSVVKQFQKKEKLNETGILTGDTTTKLMIELQKKLSDNDTQME 456 >gi|16079017|ref|NP_389840.1| carboxy-terminal processing protease [Bacillus subtilis subsp. subtilis str. 168] gi|221309859|ref|ZP_03591706.1| carboxy-terminal processing protease [Bacillus subtilis subsp. subtilis str. 168] gi|221314182|ref|ZP_03595987.1| carboxy-terminal processing protease [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319105|ref|ZP_03600399.1| carboxy-terminal processing protease [Bacillus subtilis subsp. subtilis str. JH642] gi|221323378|ref|ZP_03604672.1| carboxy-terminal processing protease [Bacillus subtilis subsp. subtilis str. SMY] gi|81669151|sp|O34666|CTPA_BACSU RecName: Full=Carboxy-terminal processing protease CtpA; Short=C-terminal processing protease; Flags: Precursor gi|2415395|gb|AAB72063.1| proteinase [Bacillus subtilis] gi|2529476|gb|AAB81168.1| OrfRM1 [Bacillus subtilis subsp. subtilis str. 168] gi|2634351|emb|CAB13850.1| carboxy-terminal processing protease [Bacillus subtilis subsp. subtilis str. 168] Length = 466 Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 10/107 (9%) Query: 76 AQTEKAIAFYQDILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 Q + + Y + P L + G++ +V+ ++ L G ++ + Sbjct: 359 PQVKAELPDYAKL------PYLDADKTYKSGDTGTNVKVAQKMLKALGY---KVKVNSMY 409 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 D S VK FQ + L+ +G++ T + + + ++ + Sbjct: 410 DQDFVSVVKQFQKKEKLNETGILTGDTTTKLMIELQKKLSDNDTQME 456 >gi|320184240|gb|EFW59054.1| L,D-transpeptidase YcfS [Shigella flexneri CDC 796-83] Length = 319 Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 53/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +Y K I + Sbjct: 150 ANPTWT-----------PTANTRARY-KAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|82544419|ref|YP_408366.1| hypothetical protein SBO_1948 [Shigella boydii Sb227] gi|81245830|gb|ABB66538.1| conserved hypothetical protein [Shigella boydii Sb227] gi|332094472|gb|EGI99521.1| lysM domain protein [Shigella boydii 3594-74] Length = 320 Score = 47.5 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 53/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 92 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +Y K I + Sbjct: 151 ANPTWT-----------PTANTRARY-KAQGIEL-----------------------PAV 175 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 176 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|282934018|ref|ZP_06339304.1| peptidoglycan binding domain protein [Lactobacillus jensenii 208-1] gi|281301914|gb|EFA94172.1| peptidoglycan binding domain protein [Lactobacillus jensenii 208-1] Length = 311 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 10/101 (9%) Query: 73 ETIAQTEKAIAFYQDILSRG-GWPELP-------IRPLHLGNSSVSVQRLRERLIISGDL 124 TI + + I + G G+ I + G S V+ ++ G + Sbjct: 34 PTIYSLREGLQHELGISALGEGFGSSTKAALSNIINKIRPGYSGNIVKLIKGAFWCKG-I 92 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +P+ S ++ + + +AVK Q G+ G++ + A+ Sbjct: 93 NPTD-FSASYGSELTNAVKTLQSDAGITADGILTVQLMAAL 132 >gi|256851783|ref|ZP_05557171.1| YbfG [Lactobacillus jensenii 27-2-CHN] gi|260661955|ref|ZP_05862865.1| YbfG [Lactobacillus jensenii 115-3-CHN] gi|297205404|ref|ZP_06922800.1| YbfG like protein [Lactobacillus jensenii JV-V16] gi|256615741|gb|EEU20930.1| YbfG [Lactobacillus jensenii 27-2-CHN] gi|260547424|gb|EEX23404.1| YbfG [Lactobacillus jensenii 115-3-CHN] gi|297149982|gb|EFH30279.1| YbfG like protein [Lactobacillus jensenii JV-V16] Length = 709 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 10/101 (9%) Query: 73 ETIAQTEKAIAFYQDILSRG-GWPELP-------IRPLHLGNSSVSVQRLRERLIISGDL 124 TI + + I + G G+ I + G S V+ ++ G + Sbjct: 34 PTIYSLREGLQHELGISALGEGFGSSTKAALSNIINKIRPGYSGNIVKLIKGAFWCKG-I 92 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +P+ S ++ + + +AVK Q G+ G++ + A+ Sbjct: 93 NPTD-FSASYGSELTNAVKTLQSDAGITADGILTVQLMAAL 132 >gi|294811200|ref|ZP_06769843.1| Putative peptidoglycan binding protein [Streptomyces clavuligerus ATCC 27064] gi|294323799|gb|EFG05442.1| Putative peptidoglycan binding protein [Streptomyces clavuligerus ATCC 27064] Length = 332 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 1/66 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P R + G+ V +L L+ G + +D E+AVK +Q + Sbjct: 85 PVPSFREMKPGDRGSDVLQLERNLVALGY-GGGLYVDPRYDRATEAAVKRWQKSLNRVVT 143 Query: 155 GMVDSS 160 G V Sbjct: 144 GRVGEG 149 >gi|154685680|ref|YP_001420841.1| XlyB [Bacillus amyloliquefaciens FZB42] gi|154351531|gb|ABS73610.1| XlyB [Bacillus amyloliquefaciens FZB42] Length = 317 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 7/69 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +PL G +V++++ L + G + +AVK FQ GL Sbjct: 246 TKPLTKG---TNVKQVQNALSALYFYPDKGAKNHGADGVYGPKTANAVKRFQSVSGLTAD 302 Query: 155 GMVDSSTLE 163 G+ T Sbjct: 303 GIYGPKTKA 311 >gi|332711580|ref|ZP_08431511.1| hypothetical protein LYNGBM3L_66650 [Lyngbya majuscula 3L] gi|332349558|gb|EGJ29167.1| hypothetical protein LYNGBM3L_66650 [Lyngbya majuscula 3L] Length = 241 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 52/153 (33%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 V+V++ ++ ++ V +G+ TP +I R NP W P I ++ Sbjct: 117 VVVDLSDTTVYLYWGEQLLQSHPVAIGKPGWDTPTGSFKIIRKQPNPIWKEP---ITGEL 173 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + PG N + I F Sbjct: 174 IP--------------------------------------------PGPDNPLGERWIGF 189 Query: 316 YSR--NNTYMHDTPEPILFNNVVRFETSGCVRV 346 +S + +H T E L + GC+R+ Sbjct: 190 WSDGHHQIGLHGTDEEELIGK---AVSHGCLRM 219 >gi|114775654|ref|ZP_01451222.1| hypothetical protein SPV1_04978 [Mariprofundus ferrooxydans PV-1] gi|114553765|gb|EAU56146.1| hypothetical protein SPV1_04978 [Mariprofundus ferrooxydans PV-1] Length = 533 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 13/82 (15%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-----PSGMVDSSTLE 163 ++ +R RL + G L+ G A + SA+ FQ L G V T Sbjct: 70 SRLRTIRNRLFLLGYLERDSGR-AALGPQLMSAITAFQQDARLSVASFVVDGWVGEQTWA 128 Query: 164 AMN--VPVDLRIRQLQVNLMRI 183 A+ V + + + R Sbjct: 129 ALQELVSFEQPLD-----MERW 145 >gi|308050969|ref|YP_003914535.1| peptidoglycan-binding domain 1 protein [Ferrimonas balearica DSM 9799] gi|307633159|gb|ADN77461.1| Peptidoglycan-binding domain 1 protein [Ferrimonas balearica DSM 9799] Length = 512 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 4/120 (3%) Query: 48 VNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLG-- 105 ++ + A ++ D + ++ + + + W P +G Sbjct: 380 DDNNRVFYAALLEQDGDQYRMALGEQQFWASADWLNQHYRGRYTVLWAPPSGLPGLIGPD 439 Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++S VQ L RL L FD +E+ ++ FQ + GLD G+ TLE + Sbjct: 440 SASAQVQWLENRLAQVQ--QRPARLLSGFDRQLEADLRGFQRQQGLDIDGLAGRQTLERL 497 >gi|94502083|ref|ZP_01308587.1| general secretion pathway protein A [Oceanobacter sp. RED65] gi|94425794|gb|EAT10798.1| general secretion pathway protein A [Oceanobacter sp. RED65] Length = 464 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 15/87 (17%) Query: 94 WPELPIRPL--HLGNSSVSVQRLRERLIIS-GDLDPSKGLSVA------------FDAYV 138 WP + + +V +R+ LI G + V FD + Sbjct: 366 WPFAFPKSVVVEPNEYHEAVSWVRQSLIQLQGQASLADDWEVIRPANSAQIRRNFFDPLL 425 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAM 165 E V+ FQ + L G++ S T+ A+ Sbjct: 426 EDQVRQFQSDYALRVDGIIGSQTIMAL 452 >gi|220933023|ref|YP_002509931.1| ErfK/YbiS/YcfS/YnhG family protein [Halothermothrix orenii H 168] gi|219994333|gb|ACL70936.1| ErfK/YbiS/YcfS/YnhG family protein [Halothermothrix orenii H 168] Length = 263 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G + +SV +L++ L G + + AVK + + GL G+ D S Sbjct: 197 LKPGMTGLSVMQLQDNLREYGF--NPGYMDARYGPTTVEAVKELESQFGLKVDGIADWSV 254 Query: 162 LEAMNVPVD 170 L +N+P D Sbjct: 255 LYILNLPDD 263 >gi|297687615|ref|XP_002821303.1| PREDICTED: matrix metalloproteinase-21-like [Pongo abelii] Length = 569 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 43/126 (34%), Gaps = 25/126 (19%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL 102 + + ++ D P+ + IA A Q LSR GW + Sbjct: 15 WLAAPWPTQPESLFHSRDRSDLEPSPLRQAKPIADLHGA----QRFLSRYGWSGVRA--- 67 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 S + G + KG A + AV+ FQ + L SG +D +TL Sbjct: 68 ---AWGPS---------LEGPPETPKG------AALAEAVRRFQRANALPASGELDVATL 109 Query: 163 EAMNVP 168 MN P Sbjct: 110 ATMNRP 115 >gi|239997099|ref|ZP_04717623.1| hypothetical protein AmacA2_21857 [Alteromonas macleodii ATCC 27126] Length = 39 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 17/33 (51%) Query: 388 VHFVYISAWSPKDSIIQFRDDIYGLDNVHVGII 420 V VY +A++ + I FR D Y D+ + + Sbjct: 1 VLIVYFTAFADEAGTIVFRRDAYNRDSYIIEKL 33 >gi|169632913|ref|YP_001706649.1| hypothetical protein ABSDF1149 [Acinetobacter baumannii SDF] gi|169151705|emb|CAP00498.1| conserved hypothetical protein; putative exported protein [Acinetobacter baumannii] Length = 418 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 46/250 (18%), Positives = 81/250 (32%), Gaps = 58/250 (23%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 A+ FQ +GL P+G + T +A+ V + ++ + + + Y + Sbjct: 170 KAIASFQQMNGLSPTGELTKETWDAL-VAKQNKPAFIEYTI------TDADLKGPYAQ-S 221 Query: 200 IP-AASLEAVENGKVGLRSTV--IVG----------RVDRQTPILHSRINRIMFNPYWVI 246 IP +L+ G + V ++G + T +I+ P + Sbjct: 222 IPSDYALQVKMKG--LYYTRVSEMLGEKFHIDEAFLKKINPTATFKKVGEKIIV-P--NV 276 Query: 247 ----PRSIIQKDMMALLRQDPQYLKDNNIHMIDEK----GKEVFVEEV-----------D 287 P I ++A YL ++ MI G Sbjct: 277 RNDLPEDIHL--IIAHKGAKQLYLFNSRNQMIASFPATIGSTETPSPTGTYKVVGVARNP 334 Query: 288 WNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W S P NF PG + + I S+ + +H TP P L + + Sbjct: 335 WYSYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGL-SKKSFGIHGTPNPSLISKTT---S 390 Query: 341 SGCVRVRNII 350 GC+R+ N Sbjct: 391 HGCIRLTNWD 400 >gi|323704753|ref|ZP_08116330.1| carboxyl-terminal protease [Thermoanaerobacterium xylanolyticum LX-11] gi|323535679|gb|EGB25453.1| carboxyl-terminal protease [Thermoanaerobacterium xylanolyticum LX-11] Length = 453 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + I + G++ +V+ L+ L + G + F A+ FQ G+ +G+ Sbjct: 363 IYINDVKKGDTGYNVKLLQSYLSLLGYYKGEP--NGYFGNDTYDALISFQKYAGIPATGV 420 Query: 157 VDSSTLEAM 165 +D T++A+ Sbjct: 421 MDRGTVDAL 429 >gi|126658355|ref|ZP_01729504.1| hypothetical protein CY0110_27385 [Cyanothece sp. CCY0110] gi|126620287|gb|EAZ91007.1| hypothetical protein CY0110_27385 [Cyanothece sp. CCY0110] Length = 191 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 50/166 (30%), Gaps = 52/166 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 V++N+ + ++ +V V +G+ +TP + +++ +P W Sbjct: 66 TRVVLNLKERKVYVYQDDQVIANYPVAIGKPGWETPRGEFSVIQMVEDPQW--------- 116 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 ++P V G + + I Sbjct: 117 -------KNP-------------WNGRVS------------------AAGPNSPLGERWI 138 Query: 314 EFYSRNNTY--MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 F+ Y H TP + + GCVR+RN ++ L Sbjct: 139 GFWREGGKYIGFHGTPGEHVMGQ---AVSHGCVRMRNQDVKALYEL 181 >gi|330881024|gb|EGH15173.1| ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 154 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +L +++N+ + G+ V + VGR +PI +++ NP Sbjct: 89 RFILPPGPREG-IVINLAEYRMYYYPKGQNVVHTYPLGVGREGWGSPIGVTKVTAKTPNP 147 Query: 243 YWVIPRS 249 W P S Sbjct: 148 TWTPPAS 154 >gi|218289273|ref|ZP_03493508.1| Peptidoglycan-binding domain 1 protein [Alicyclobacillus acidocaldarius LAA1] gi|218240621|gb|EED07801.1| Peptidoglycan-binding domain 1 protein [Alicyclobacillus acidocaldarius LAA1] Length = 339 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 16/93 (17%) Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 E AV F+ +H L G+ + A+ Q + + ++ Y+LV Sbjct: 173 EGAVMAFESQHHLAVDGIAGPDVIHAL--------SQALASGE-----MAPQVPYSYILV 219 Query: 199 --NIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 ++P +LE NGK+ L+S G TP Sbjct: 220 TTSLPE-TLELWVNGKLVLKSLCNTGIPQAPTP 251 >gi|302849927|ref|XP_002956492.1| hypothetical protein VOLCADRAFT_121539 [Volvox carteri f. nagariensis] gi|300258190|gb|EFJ42429.1| hypothetical protein VOLCADRAFT_121539 [Volvox carteri f. nagariensis] Length = 655 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 8/78 (10%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 +L+RG +P L G V +L+ L G + F E+AVK FQ Sbjct: 345 MLARG--EAVPESGLEAG----EVMQLQRYLHKYGWYGGE--VDGYFGPATEAAVKRFQE 396 Query: 148 RHGLDPSGMVDSSTLEAM 165 + L G+ +T M Sbjct: 397 FYHLKVDGIAGPATRSLM 414 >gi|292670157|ref|ZP_06603583.1| endopeptidase [Selenomonas noxia ATCC 43541] gi|292648109|gb|EFF66081.1| endopeptidase [Selenomonas noxia ATCC 43541] Length = 245 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G V L++ L +G K F E AV FQ + + +G+V+++ Sbjct: 27 TLREGAHGHDVLILQQALQKAGY--KIKNADGVFGKDTERAVAEFQRDNKIKITGVVNNA 84 Query: 161 TLEAMNVPVDLR 172 T A+ R Sbjct: 85 TWRALKNAPSTR 96 >gi|293409479|ref|ZP_06653055.1| ycfS protein [Escherichia coli B354] gi|291469947|gb|EFF12431.1| ycfS protein [Escherichia coli B354] Length = 321 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 55/170 (32%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 93 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 151 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + +D + P Sbjct: 152 ANPTWTPTANI-----------------RARYK----------AQGIDLPAVVP------ 178 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 179 --AGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 223 >gi|325122922|gb|ADY82445.1| ATP synthase [Acinetobacter calcoaceticus PHEA-2] Length = 412 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 85/253 (33%), Gaps = 64/253 (25%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 A+ FQ +GL P+G + T +A+ V + ++ + + + Y + Sbjct: 164 KAISSFQQMNGLSPTGELTKETWDAL-VAKQTKPAFIEYTI------SDADLKGPYAE-S 215 Query: 200 IP-AASLEAVENGKVGLRSTV--IVG----------RVDRQTPILHSRINRIMFNPYWVI 246 IP +L+A G + V ++G + T +I+ + Sbjct: 216 IPSDYALQAKMKG--LYYTRVSEMLGEKFHIDEAFLKKINPTATFKKAGEKII------V 267 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV--FVEEV------------------ 286 P ++ D+ + + +++ + + + + F + Sbjct: 268 PN--VRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVA 325 Query: 287 --DWNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 W S P NF PG + + I S+ + +H TP P L + Sbjct: 326 RNPWYSYSPSNFVQGKNLKPLSLPPGPNAPVGNIWIGL-SKKSFGIHGTPNPSLISKTA- 383 Query: 338 FETSGCVRVRNII 350 + GC+R+ N Sbjct: 384 --SHGCIRLTNWD 394 >gi|295838581|ref|ZP_06825514.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Streptomyces sp. SPB74] gi|295827071|gb|EDY44726.2| ErfK/YbiS/YcfS/YnhG superfamily protein [Streptomyces sp. SPB74] Length = 196 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 14/123 (11%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM--NVPVD 170 L+ RL G + F A+ FQ GL SG++D+ T + P Sbjct: 3 ALQARLWSLGFFRQQP--TGYFGEVTARALAAFQRDRGLGASGVLDAVTWGRLRAAGPAP 60 Query: 171 LRIRQLQVNLMRIKKLLEQKMGLRY-----VLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 + L L R + V+ + +L + +G+V V G Sbjct: 61 TKAE-----LYPETTLPPTDPDPRCRTGRALCVSKKSRTLSWMVDGRVVSVMDVRFGSAY 115 Query: 226 RQT 228 T Sbjct: 116 TPT 118 >gi|149182876|ref|ZP_01861336.1| sporulation specific N-acetylmuramoyl-L-alanine amidase (spore cortex-lytic enzyme) [Bacillus sp. SG-1] gi|148849435|gb|EDL63625.1| sporulation specific N-acetylmuramoyl-L-alanine amidase (spore cortex-lytic enzyme) [Bacillus sp. SG-1] Length = 296 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G + V L+ RL G + + F AV+ FQ GL G+V T Sbjct: 45 IQKGATGDDVIELQSRLQYIGYYNG--NIDGVFGWGTYWAVRNFQYEFGLPIDGLVGQET 102 Query: 162 LEAM 165 + + Sbjct: 103 KDKL 106 >gi|326439844|ref|ZP_08214578.1| hypothetical protein SclaA2_02210 [Streptomyces clavuligerus ATCC 27064] Length = 356 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 1/66 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P R + G+ V +L L+ G + +D E+AVK +Q + Sbjct: 109 PVPSFREMKPGDRGSDVLQLERNLVALGY-GGGLYVDPRYDRATEAAVKRWQKSLNRVVT 167 Query: 155 GMVDSS 160 G V Sbjct: 168 GRVGEG 173 >gi|254411200|ref|ZP_05024977.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181701|gb|EDX76688.1| Putative peptidoglycan binding domain protein [Microcoleus chthonoplastes PCC 7420] Length = 282 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 8/116 (6%) Query: 52 FDNFLARVDMGIDSDIPIISKETI-AQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVS 110 L R+ + P+ + A T+ A+ +Q I+ + + N ++ Sbjct: 160 LQKALNRLKIRSPKGTPLKEDGSNEADTKAALKTFQAIVGVTPTGTADAKTWQIINQILA 219 Query: 111 VQRLRERLIISGDLDP------SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + LRE +G + + + AVK FQ + G+ G++ + Sbjct: 220 MPVLREN-HATGFVVKYLQRRIGATPDGIYGSGTAGAVKRFQQQQGITADGIIGAQ 274 >gi|119486197|ref|ZP_01620257.1| carboxypeptidase [Lyngbya sp. PCC 8106] gi|119456688|gb|EAW37817.1| carboxypeptidase [Lyngbya sp. PCC 8106] Length = 536 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST-- 161 V++L+E L G + G F ++AV+ FQ GL G+V T Sbjct: 204 PPMQGERVRQLQEDLANVGIAITADG---IFGKQTDAAVRKFQAEQGLQVDGIVGFVTQT 260 Query: 162 -LEAMN 166 L+ +N Sbjct: 261 KLDQLN 266 >gi|158321863|ref|YP_001514370.1| peptidoglycan binding domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158142062|gb|ABW20374.1| Peptidoglycan-binding domain 1 protein [Alkaliphilus oremlandii OhILAs] Length = 762 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V+ L+ L G + + +F AVK +Q ++GL G V Sbjct: 42 RLLVKGSIGNDVKLLQTLLNNEG---ANLEVDGSFGPLTLKAVKEYQSKNGLKVDGFVGP 98 Query: 160 STLEAM 165 T ++ Sbjct: 99 LTRASL 104 >gi|330830587|ref|YP_004393539.1| general secretion pathway protein A [Aeromonas veronii B565] gi|328805723|gb|AEB50922.1| General secretion pathway protein A [Aeromonas veronii B565] Length = 522 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 22/43 (51%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 L + FD +++ ++ FQ GL P G+ S+TL +N Sbjct: 466 LQQPERKVRRFDGELKNKLQQFQRDQGLTPDGIAGSNTLLRLN 508 >gi|302545808|ref|ZP_07298150.1| putative peptidoglycan-binding membrane protein [Streptomyces hygroscopicus ATCC 53653] gi|302463426|gb|EFL26519.1| putative peptidoglycan-binding membrane protein [Streptomyces himastatinicus ATCC 53653] Length = 497 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 6/69 (8%) Query: 98 PIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS- 154 P P L G+S V L++RL L +D V+ AV +Q R+ + Sbjct: 421 PTGPPVLREGDSGAEVTELQKRLTQL--LIYIGVADGEYDDGVKDAVAAYQDRYDITGDP 478 Query: 155 -GMVDSSTL 162 G+ +T Sbjct: 479 EGVYGENTR 487 >gi|295698357|ref|YP_003603012.1| LysM domain protein [Candidatus Riesia pediculicola USDA] gi|291157235|gb|ADD79680.1| LysM domain protein [Candidatus Riesia pediculicola USDA] Length = 319 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 55/167 (32%), Gaps = 40/167 (23%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + ++ +L+N+ L + + V +G+ + TP ++I +++ P Sbjct: 95 QMIIPNLKEDEDILINLAELRLYHFLKKKNIVSVYPVGIGQKEASTPTFEAKIIQMIKKP 154 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W IP I+K + K EV ++ Sbjct: 155 IW-IPTKNIRK----------------RYELEGIKLPEVVPSGIN--------------- 182 Query: 303 GKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 N M + Y +H T E F R TSGC+R+R Sbjct: 183 ---NPMGMYAMRLSYGKGEYLIHGTNEN--FGIGSR-VTSGCIRLRK 223 >gi|116492825|ref|YP_804560.1| periplasmic protease [Pediococcus pentosaceus ATCC 25745] gi|116102975|gb|ABJ68118.1| Periplasmic protease [Pediococcus pentosaceus ATCC 25745] Length = 472 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 12/96 (12%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + +G S+ ++ ++ L G D +S + V+ AV+ +Q ++ L +G VD+ Sbjct: 383 KTYSVGESNSDIKNIQIALKGLGYYD--DKISKEYTEKVKQAVEAYQEKNQLAVTGKVDA 440 Query: 160 STLEAM--NVPVDLRIRQLQVN---LMRIKKLLEQK 190 T+ ++ NV I+ L N L + +K++ + Sbjct: 441 KTMRSIEQNV-----IKTLAKNDPALEKAQKVMNDE 471 >gi|95930333|ref|ZP_01313070.1| Peptidoglycan-binding domain 1 [Desulfuromonas acetoxidans DSM 684] gi|95133585|gb|EAT15247.1| Peptidoglycan-binding domain 1 [Desulfuromonas acetoxidans DSM 684] Length = 552 Score = 47.1 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 26/72 (36%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + V L ++L +P ++ + + ++ FQ GL Sbjct: 465 PSAYSGAVPPDEEGPMVLWLEQQLAHLMQREPRPDATLRLNGLLLDELQQFQQSEGLAAD 524 Query: 155 GMVDSSTLEAMN 166 G++ TL +N Sbjct: 525 GIIGPITLIHLN 536 >gi|302390075|ref|YP_003825896.1| carboxyl-terminal protease [Thermosediminibacter oceani DSM 16646] gi|302200703|gb|ADL08273.1| carboxyl-terminal protease [Thermosediminibacter oceani DSM 16646] Length = 473 Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 7/101 (6%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P RPL G + V L++ L G + F+ + AV+ FQ + G + Sbjct: 370 PLKSTRPLKYGCIGLDVMGLQQHLRFLGLFNGEPDG--VFEQRTKKAVEDFQAKKGFPVN 427 Query: 155 GMVDSSTLEAMNVPVDLRIR-----QLQVNLMRIKKLLEQK 190 G+ D LEA++ V+ ++ QL+ L +K LL +K Sbjct: 428 GIADEKLLEALDGAVNEALKSREDLQLKKALEVLKGLLTEK 468 >gi|308173220|ref|YP_003919925.1| N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens DSM 7] gi|307606084|emb|CBI42455.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus amyloliquefaciens DSM 7] gi|328553860|gb|AEB24352.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus amyloliquefaciens TA208] gi|328911284|gb|AEB62880.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus amyloliquefaciens LL3] Length = 317 Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 7/69 (10%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +PL G +V++++ L + G + +AVK FQ GL Sbjct: 246 TKPLTKG---TNVKQVQTALSALYFYPDKGAKNHGADGVYGPKTANAVKRFQSVSGLTAD 302 Query: 155 GMVDSSTLE 163 G+ T Sbjct: 303 GIYGPKTKA 311 >gi|253578249|ref|ZP_04855521.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850567|gb|EES78525.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 512 Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 49/189 (25%), Gaps = 60/189 (31%) Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIV---GRVDRQTPILHSRINR 237 MR +G Y+ V++ + +NG + +S ++ G DR+T Sbjct: 371 MRANAHGINDLGDTYIEVDLTEQYMWYYQNGNIIFQSEIVSGLPGDPDRKT--------- 421 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 P I + + V E+ N + Sbjct: 422 ---------PPGI--------------------FTLNSKSSPSVLRGEMTAN----GTYS 448 Query: 298 FRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE---TSGCVRV--RNIIDL 352 + Q HD F R+ + GC+ + N L Sbjct: 449 YEQP---------VTYWMPFNGGIGFHDADWQPYFGGD-RYLTGGSHGCINLPPENAGQL 498 Query: 353 DVWLLKDTP 361 + D P Sbjct: 499 YSLIQYDVP 507 >gi|114566295|ref|YP_753449.1| hypothetical protein Swol_0756 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337230|gb|ABI68078.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 204 Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 2/70 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V L++ L G + F A +AV FQ L G+V T Sbjct: 32 LQWGSRGNAVVELQKTLNNQGFWCGATDG--IFGAKTYNAVINFQKSKKLQVDGIVGPQT 89 Query: 162 LEAMNVPVDL 171 +A+ + Sbjct: 90 KKALGLSTAT 99 >gi|117619278|ref|YP_857770.1| LysM domain-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560685|gb|ABK37633.1| LysM domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 308 Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 42/154 (27%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L GK V + +G++ TP +++ R NP W +I ++ Sbjct: 100 IVINVAEMRLYYYPKGKNVVQVLPIGIGQLGVNTPENWITKVERKRANPTWTPTENIRRR 159 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M + Sbjct: 160 -----------------------------------YAAQGKTLPAVWPAGPDNPMGLHAL 184 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 + H T F +R +SGCVR+R Sbjct: 185 YIGNLYAI--HGTNAT--FGIGLR-VSSGCVRLR 213 >gi|39995294|ref|NP_951245.1| putative lipoprotein [Geobacter sulfurreducens PCA] gi|39982056|gb|AAR33518.1| lipoprotein, putative [Geobacter sulfurreducens PCA] gi|298504297|gb|ADI83020.1| peptidoglycan L,D-transpeptidase lipoprotein, YkuD family, SPOR domain-containing [Geobacter sulfurreducens KN400] Length = 435 Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 51/167 (30%), Gaps = 54/167 (32%) Query: 189 QKMGLRYVLVNIPAASLEAV-ENGKV--GLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 + +++N+ L ENG V +G +R TP +R+ R P W Sbjct: 115 PDAPRKGIVINLATMRLFQFKENGGALAVSTYPVGIGTKERPTPQGPTRVARKASRPTWY 174 Query: 246 IPRSII-----QKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 +P SI + D++ R Sbjct: 175 VPASIAEDHRKKGDILPA----------------------------------------RV 194 Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 PG N + + + Y +H T +P ++GC+R+ Sbjct: 195 PPGPENPLGDYALYL--SRSGYLIHGTNKPASIGLKA---SNGCMRL 236 >gi|242062568|ref|XP_002452573.1| hypothetical protein SORBIDRAFT_04g028370 [Sorghum bicolor] gi|241932404|gb|EES05549.1| hypothetical protein SORBIDRAFT_04g028370 [Sorghum bicolor] Length = 368 Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 H+G + L++ L G L P S AFD +ESA+ +Q GL+ +G +D+ Sbjct: 52 HMGEERQGLAGLKDYLSHFGYLPPPPPSSPFSDAFDQDLESAIATYQRNFGLNATGALDA 111 Query: 160 STLEAMNVP 168 ST+ M P Sbjct: 112 STVSQMVSP 120 >gi|149371059|ref|ZP_01890654.1| hypothetical protein SCB49_05220 [unidentified eubacterium SCB49] gi|149355845|gb|EDM44403.1| hypothetical protein SCB49_05220 [unidentified eubacterium SCB49] Length = 222 Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 +P L G+S+ +V+ L++ L+ S F E A+K FQ + + G Sbjct: 149 TIPSGYLRKGDSNENVKMLQKILLKLNYSPGSADG--IFGLKTEVALKEFQEANNITIDG 206 Query: 156 MVDSSTLE 163 + S T + Sbjct: 207 IYGSETRQ 214 >gi|125541078|gb|EAY87473.1| hypothetical protein OsI_08881 [Oryza sativa Indica Group] Length = 372 Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 H G + RL++ L G L P S AFD +E+A+ +Q GL+ +G +D+ Sbjct: 54 HAGEEREGLGRLKDYLSHFGYLPPPPSSSPYSDAFDDSLEAAIAAYQRNFGLNATGELDT 113 Query: 160 STLEAMNVP 168 T++ M P Sbjct: 114 DTVDQMVAP 122 >gi|145298061|ref|YP_001140902.1| LysM domain-containing protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142850833|gb|ABO89154.1| LysM domain protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 302 Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 42/154 (27%) Query: 196 VLVNIPAASLEAVENGKVGLRS-TVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N+ L GK + + +G++ TP +++ R NP W +I ++ Sbjct: 100 IVINVAEMRLYYYPKGKNVVEVLPIGIGQLGVNTPENWITKVERKRANPTWTPTENIRRR 159 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + G N M + Sbjct: 160 -----------------------------------YAAQGKTLPAVWPAGPDNPMGLHAL 184 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 + H T F +R +SGCVR+R Sbjct: 185 YIGNLYAI--HGTNAT--FGIGLR-VSSGCVRLR 213 >gi|113475770|ref|YP_721831.1| ErfK/YbiS/YcfS/YnhG [Trichodesmium erythraeum IMS101] gi|110166818|gb|ABG51358.1| ErfK/YbiS/YcfS/YnhG [Trichodesmium erythraeum IMS101] Length = 219 Score = 47.1 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 44/153 (28%), Gaps = 54/153 (35%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 + +N ++ + +G+ +TP ++ + + NP W P + +++ Sbjct: 103 RVYVYKNDQLKTSYPIAIGKEGWETPTGTHKVIQKIPNPSWTHPFT---GEIIP------ 153 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS--TKIEFYSRNNT 321 PG N + N Sbjct: 154 --------------------------------------PGPENPLGERWIGFWTDGTNYI 175 Query: 322 YMHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 H TP + GCVR+ ++++DL Sbjct: 176 GFHGTPNEETVGQ---AASHGCVRMFNQDVLDL 205 >gi|115448591|ref|NP_001048075.1| Os02g0740700 [Oryza sativa Japonica Group] gi|46390313|dbj|BAD15762.1| putative zinc metalloproteinase [Oryza sativa Japonica Group] gi|113537606|dbj|BAF09989.1| Os02g0740700 [Oryza sativa Japonica Group] Length = 372 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 H G + RL++ L G L P S AFD +E+A+ +Q GL+ +G +D+ Sbjct: 54 HAGEEREGLGRLKDYLSHFGYLPPPPSSSPYSDAFDDSLEAAIAAYQRNFGLNATGELDT 113 Query: 160 STLEAMNVP 168 T++ M P Sbjct: 114 DTVDQMVAP 122 >gi|293609704|ref|ZP_06692006.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828156|gb|EFF86519.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 415 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 85/253 (33%), Gaps = 64/253 (25%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 A+ FQ +GL P+G + T +A+ V + ++ + + + Y + Sbjct: 167 KAISSFQQMNGLSPTGELTKETWDAL-VAKQTKPAFIEYTI------SDADLKGPYAE-S 218 Query: 200 IP-AASLEAVENGKVGLRSTV--IVG----------RVDRQTPILHSRINRIMFNPYWVI 246 IP +L+A G + V ++G + T +I+ + Sbjct: 219 IPSDYALQAKMKG--LYYTRVSEMLGEKFHIDEAFLKKINPTATFKKAGEKII------V 270 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV--FVEEV------------------ 286 P ++ D+ + + +++ + + + + F + Sbjct: 271 PN--VRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVA 328 Query: 287 --DWNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 W S P NF PG + + I S+ + +H TP P L + Sbjct: 329 RNPWYSYSPSNFVQGKNLKPLSLPPGPNAPVGNIWIGL-SKKSFGIHGTPNPSLISKTA- 386 Query: 338 FETSGCVRVRNII 350 + GC+R+ N Sbjct: 387 --SHGCIRLTNWD 397 >gi|125583634|gb|EAZ24565.1| hypothetical protein OsJ_08327 [Oryza sativa Japonica Group] Length = 372 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 H G + RL++ L G L P S AFD +E+A+ +Q GL+ +G +D+ Sbjct: 54 HAGEEREGLGRLKDYLSHFGYLPPPPSSSPYSDAFDDSLEAAIAAYQRNFGLNATGELDT 113 Query: 160 STLEAMNVP 168 T++ M P Sbjct: 114 DTVDQMVAP 122 >gi|28393482|gb|AAO42162.1| putative proteinase [Arabidopsis thaliana] Length = 364 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDL-DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +G+ V L+ L G + D S+ S FD +ESA+ L+Q GL +G +D+ST Sbjct: 62 QIGSHVSGVSELKRYLHRFGYVNDGSEIFSDVFDGPLESAISLYQENLGLPITGRLDTST 121 Query: 162 LEAMNVP 168 + M++P Sbjct: 122 VTLMSLP 128 >gi|53804647|ref|YP_113750.1| N-acetylmuramoyl-L-alanine amidase domain/peptidoglycan binding domain-containing protein [Methylococcus capsulatus str. Bath] gi|53758408|gb|AAU92699.1| N-acetylmuramoyl-L-alanine amidase domain/peptidoglycan binding domain protein [Methylococcus capsulatus str. Bath] Length = 617 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFD---AYVESAVKLFQMRHGLDPSGMVDSSTLE 163 + +V +++ L G + LS A+ + +AV+ FQ GL SG VD +TL Sbjct: 291 TGDAVGAIQDLLSGHGHIGLPCLLSAAYGRFGSKTAAAVQDFQTGQGLSASGEVDVATLR 350 Query: 164 AMNVPVDLRIRQLQVNLM 181 A+ + R QV L Sbjct: 351 ALVRTPAAKPRISQVYLE 368 >gi|333027471|ref|ZP_08455535.1| hypothetical protein STTU_4975 [Streptomyces sp. Tu6071] gi|332747323|gb|EGJ77764.1| hypothetical protein STTU_4975 [Streptomyces sp. Tu6071] Length = 317 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS-G 155 + L G+S V +L ERL G FD +E A+ +Q+ G G Sbjct: 242 VTQAVLRRGDSGPEVAKLEERLRAVGIYPGRDDG--RFDRGLEYALMTYQVTRGASDEHG 299 Query: 156 MVDSSTLEAM 165 + + T + Sbjct: 300 VYGADTRTKL 309 >gi|304436665|ref|ZP_07396634.1| endopeptidase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370361|gb|EFM24017.1| endopeptidase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 245 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V L+ L +G K + F E AV FQ + + +G+V+++ Sbjct: 27 TLREGSHGHDVLVLQRALQNAGY--QIKSIDGNFGKETEHAVAAFQRDNKIKITGVVNNA 84 Query: 161 TLEAMNVPVDLR 172 T A+ R Sbjct: 85 TWRALRNAPAKR 96 >gi|302518748|ref|ZP_07271090.1| predicted protein [Streptomyces sp. SPB78] gi|302427643|gb|EFK99458.1| predicted protein [Streptomyces sp. SPB78] Length = 317 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS-G 155 + L G+S V +L ERL G FD +E A+ +Q+ G G Sbjct: 242 VTQAVLRRGDSGPEVAKLEERLRAVGIYPGRDDG--RFDRGLEYALMTYQVTRGASDEHG 299 Query: 156 MVDSSTLEAM 165 + + T + Sbjct: 300 VYGADTRTKL 309 >gi|330838933|ref|YP_004413513.1| ErfK/YbiS/YcfS/YnhG family protein [Selenomonas sputigena ATCC 35185] gi|329746697|gb|AEC00054.1| ErfK/YbiS/YcfS/YnhG family protein [Selenomonas sputigena ATCC 35185] Length = 409 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 8/93 (8%) Query: 188 EQKMGLRY-VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 +K G Y +++N+ A SL +N + V +G++ TP+ + + NP WV Sbjct: 60 AEKTGDPYKIIINVAARSLGVYKNNEKIRLYPVGLGKLSTPTPVGYFSVLTKEENPTWVD 119 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 P K+ + +P + G Sbjct: 120 PGD--SKNTIPSGEGNP-----LGYRWMQVWGN 145 >gi|260887313|ref|ZP_05898576.1| ErfK/YbiS/YcfS/YnhG family protein [Selenomonas sputigena ATCC 35185] gi|260862949|gb|EEX77449.1| ErfK/YbiS/YcfS/YnhG family protein [Selenomonas sputigena ATCC 35185] Length = 429 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 8/93 (8%) Query: 188 EQKMGLRY-VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 +K G Y +++N+ A SL +N + V +G++ TP+ + + NP WV Sbjct: 80 AEKTGDPYKIIINVAARSLGVYKNNEKIRLYPVGLGKLSTPTPVGYFSVLTKEENPTWVD 139 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGK 279 P K+ + +P + G Sbjct: 140 PGD--SKNTIPSGEGNP-----LGYRWMQVWGN 165 >gi|269124313|ref|YP_003297683.1| peptidoglycan-binding domain 1 protein [Thermomonospora curvata DSM 43183] gi|268309271|gb|ACY95645.1| Peptidoglycan-binding domain 1 protein [Thermomonospora curvata DSM 43183] Length = 332 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS---GMVD 158 L G++ V+ L+ L+ +G+ P G+ F A E+AV+ FQ +H + G Sbjct: 171 LKRGDTGDRVRDLQSALLKAGERLPEYGVDGDFGAETEAAVRSFQSKHPDEVDRVTGRYG 230 Query: 159 SSTLEAM 165 T A+ Sbjct: 231 PQTAAAL 237 >gi|56421627|ref|YP_148945.1| carboxyl-terminal processing protease [Geobacillus kaustophilus HTA426] gi|56381469|dbj|BAD77377.1| carboxyl-terminal processing protease [Geobacillus kaustophilus HTA426] Length = 482 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +PL + + ++ L G +P + F E AV+ FQ + L +G +D Sbjct: 392 KPLRYDMNDEQIANAQKMLKGLGF-NPGRTDG-YFSKETEQAVQAFQKANQLPVTGRIDE 449 Query: 160 STLEAM 165 +T +A+ Sbjct: 450 ATADAL 455 >gi|150390170|ref|YP_001320219.1| peptidoglycan binding domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149950032|gb|ABR48560.1| Peptidoglycan-binding domain 1 protein [Alkaliphilus metalliredigens QYMF] Length = 148 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 15/26 (57%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAM 165 +A+K FQ + L G+V T +A+ Sbjct: 121 AAIKAFQKDNDLTVDGIVGPQTRKAL 146 >gi|260904990|ref|ZP_05913312.1| N-acetymuramyl-L-alanine amidase [Brevibacterium linens BL2] Length = 354 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 10/97 (10%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK 128 ++ KET + E+A D + R P+R L + V RL+ L G + Sbjct: 38 VMGKETFTELERARYQLGDRVLRYD----PVRVL----TGDDVLRLQRTLAGLGFY--AG 87 Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + A ++AVK QM G G+ TL + Sbjct: 88 RMDAEYSAVTDAAVKELQMSLGTKVDGIAGPQTLRGL 124 Score = 43.3 bits (101), Expect = 0.072, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + G L+ S FD E V+ FQ G+ G++ T + Sbjct: 1 MARLG-LNVGDTDSDEFDRAFELGVRQFQQVRGILCDGVMGKETFTEL 47 >gi|21553383|gb|AAM62476.1| proteinase like protein [Arabidopsis thaliana] Length = 364 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDL-DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +G+ V L+ L G + D S+ S FD +ESA+ L+Q GL +G +D+ST Sbjct: 62 QIGSHVSGVSELKRYLHRFGYVKDGSEIFSDVFDGPLESAISLYQENLGLPITGRLDTST 121 Query: 162 LEAMNVP 168 + M++P Sbjct: 122 VTLMSLP 128 >gi|15235820|ref|NP_193397.1| matrix metalloproteinase, putative [Arabidopsis thaliana] gi|2245019|emb|CAB10439.1| proteinase like protein [Arabidopsis thaliana] gi|7268414|emb|CAB78706.1| proteinase like protein [Arabidopsis thaliana] gi|332658379|gb|AEE83779.1| matrix metalloprotease domain-containing protein [Arabidopsis thaliana] Length = 364 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDL-DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +G+ V L+ L G + D S+ S FD +ESA+ L+Q GL +G +D+ST Sbjct: 62 QIGSHVSGVSELKRYLHRFGYVNDGSEIFSDVFDGPLESAISLYQENLGLPITGRLDTST 121 Query: 162 LEAMNVP 168 + M++P Sbjct: 122 VTLMSLP 128 >gi|323963704|gb|EGB59214.1| peptidase M23 [Escherichia coli M863] gi|327254961|gb|EGE66571.1| putative peptidoglycan binding domain protein [Escherichia coli STEC_7v] Length = 253 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Query: 114 LRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 LR L ++G ++ + + F AVK+FQ +GL+ G+V T + VP Sbjct: 6 LRFTLSVAGIVEMATAVVVEDGIFGKNTYDAVKIFQRYNGLNDDGIVGPQTWRKLGVP 63 >gi|323518861|gb|ADX93242.1| hypothetical protein ABTW07_2818 [Acinetobacter baumannii TCDC-AB0715] Length = 415 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 91/284 (32%), Gaps = 78/284 (27%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 A+ FQ +GL P+G + T +A+ V + ++ + + + Y + Sbjct: 167 KAIASFQQMNGLSPTGELTKETWDAL-VAKQNKPAFIEYTI------TDADLKGPYAQ-S 218 Query: 200 IP-AASLEAVENGKVGLRSTV--IVG----------RVDRQTPILHSRINRIMFNPYWVI 246 IP +L+A G + V ++G + T +I+ + Sbjct: 219 IPSDYALQAKMKG--LYYTRVSEMLGEKFHIDEAFLKKINPTATFKKVGEKII------V 270 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV--FVEEV------------------ 286 P ++ D+ + + +++ + + + + F + Sbjct: 271 PN--VRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVA 328 Query: 287 --DWNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 W S P NF PG + + I S+ + +H TP P L + Sbjct: 329 RNPWYSYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGL-SKKSFGIHGTPNPSLISKTA- 386 Query: 338 FETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVK 381 + GC+R+ N W + V++ T Sbjct: 387 --SHGCIRLTN--------------WDANDLGNKVRSGVTVKFS 414 >gi|319764568|ref|YP_004128505.1| peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans BC] gi|317119129|gb|ADV01618.1| Peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans BC] Length = 342 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 PE + L S V+ L+ RL + L + + V+ FQ HGL + Sbjct: 44 PEPLAQELRHRMESPLVRELQVRLRHANYLALYD-VDDRYGLKTRETVRKFQKDHGLRET 102 Query: 155 GMVDSSTLEAM 165 G+VD +T + + Sbjct: 103 GVVDQATWDRL 113 >gi|326202807|ref|ZP_08192674.1| spore cortex-lytic enzyme [Clostridium papyrosolvens DSM 2782] gi|325986884|gb|EGD47713.1| spore cortex-lytic enzyme [Clostridium papyrosolvens DSM 2782] Length = 231 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L +G++ V+ +++ L G D +D +V +Q ++GL +G+ Sbjct: 30 SAPSLKIGDNGDKVKDMQQELKNWGYFDGQVDGRFGYD--TLRSVLNYQRQYGLKANGVA 87 Query: 158 DSSTLEAMNVPVDLRIRQLQVNL 180 D +TL + + + I VN Sbjct: 88 DRTTL--LTMGLAELIESGTVNA 108 >gi|138895808|ref|YP_001126261.1| sporulation specific N-acetylmuramoyl-L-alanineamidase [Geobacillus thermodenitrificans NG80-2] gi|134267321|gb|ABO67516.1| Sporulation specific N-acetylmuramoyl-L-alanineamidase, spore cortex-lytic enzyme [Geobacillus thermodenitrificans NG80-2] Length = 263 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 2/75 (2%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 G + + G V L+ RL G + F A++ FQ ++G Sbjct: 20 AGDAAAFSPQVIQRGAVGDDVIELQARLQYLGFYKG--KIDGVFGWGTYWALRNFQQKYG 77 Query: 151 LDPSGMVDSSTLEAM 165 L G+ + T + Sbjct: 78 LPVDGLAGAETKRKL 92 >gi|196248696|ref|ZP_03147396.1| spore cortex-lytic enzyme [Geobacillus sp. G11MC16] gi|196211572|gb|EDY06331.1| spore cortex-lytic enzyme [Geobacillus sp. G11MC16] Length = 263 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 2/75 (2%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 G + + G V L+ RL G + F A++ FQ ++G Sbjct: 20 AGDAAAFSPQVIQRGAVGDDVIELQARLQYLGFYKG--KIDGVFGWGTYWALRNFQQKYG 77 Query: 151 LDPSGMVDSSTLEAM 165 L G+ + T + Sbjct: 78 LPVDGLAGAETKRKL 92 >gi|182433829|ref|YP_001821548.1| hypothetical protein SGR_36t [Streptomyces griseus subsp. griseus NBRC 13350] gi|182440894|ref|YP_001828613.1| hypothetical protein SGR_7103t [Streptomyces griseus subsp. griseus NBRC 13350] gi|178462345|dbj|BAG16865.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178469410|dbj|BAG23930.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 142 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V+ ++ LI G + F +AV FQ GLD G+V ++T Sbjct: 80 GDTGDRVREIQCLLIFKGF--GVGAVDGDFGPATRTAVVAFQKNRGLDYDGIVGANTWRK 137 Query: 165 MNV 167 + V Sbjct: 138 LRV 140 >gi|157145092|ref|YP_001452411.1| hypothetical protein CKO_00823 [Citrobacter koseri ATCC BAA-895] gi|157082297|gb|ABV11975.1| hypothetical protein CKO_00823 [Citrobacter koseri ATCC BAA-895] Length = 310 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 61/198 (30%), Gaps = 49/198 (24%) Query: 196 VLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTP-ILHSRINRIMFNPYWVIPRSIIQK 253 ++VN+ L + G + +G R+TP + + R P W P + ++ Sbjct: 99 IVVNVAEMRLYYYPKGGDTVDVLPIGIGEAGRETPRNWVTAVERKQEAPSWT-PTANTRR 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + P ++ G N M I Sbjct: 158 EYAKRGESLPAFV----------------------------------PAGPDNPMGLYAI 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI----- 368 H T F +R + GC+R+RN D +L + P +R I Sbjct: 184 YIGKLYAI--HGTNAN--FGIGLR-VSQGCIRLRN--DDIKYLFDNVPVGTRVQIIDQPL 236 Query: 369 EEVVKTRKTTPVKLATEV 386 + V+ + +++ + Sbjct: 237 KTTVEADGSRWIEVHEPL 254 >gi|148264215|ref|YP_001230921.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter uraniireducens Rf4] gi|146397715|gb|ABQ26348.1| ErfK/YbiS/YcfS/YnhG family protein [Geobacter uraniireducens Rf4] Length = 439 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 3/65 (4%) Query: 189 QKMGLRYVLVNIPAASLEAVENGK---VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 + ++VN+ L + V V VG +R TP + R P W Sbjct: 119 PDAPRKGIVVNLATMRLFQFKGDSKSLVVSTYPVGVGTKERPTPTGQMHVERKATRPTWH 178 Query: 246 IPRSI 250 +P SI Sbjct: 179 VPASI 183 >gi|150390862|ref|YP_001320911.1| ErfK/YbiS/YcfS/YnhG family protein [Alkaliphilus metalliredigens QYMF] gi|149950724|gb|ABR49252.1| ErfK/YbiS/YcfS/YnhG family protein [Alkaliphilus metalliredigens QYMF] Length = 332 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 17/131 (12%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS---TLEAM-NVPVDLRI 173 L G D +A+ FQ H L G+ L A+ N + Sbjct: 49 LKTLGYFHEDTKQQ---DINKRNAIIRFQSEHNLTVDGIYGPQSETVLSALVNGSERRYL 105 Query: 174 RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHS 233 + + +++ +N L E KV + V G+ TP Sbjct: 106 DVID----------QPPTKGKWMTINKTKRILTLYEGDKVMKKYPVAQGKEPGLTPEGKF 155 Query: 234 RINRIMFNPYW 244 I + NP W Sbjct: 156 TIVNKLVNPGW 166 >gi|254423217|ref|ZP_05036935.1| ErfK/YbiS/YcfS/YnhG family [Synechococcus sp. PCC 7335] gi|196190706|gb|EDX85670.1| ErfK/YbiS/YcfS/YnhG family [Synechococcus sp. PCC 7335] Length = 202 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 40/140 (28%), Gaps = 52/140 (37%) Query: 211 GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNN 270 GK +R V VG+ QTPI + ++ P W P + ++D+ Sbjct: 93 GKPTIRYEVAVGQSAWQTPIGSFEVTSMIEQPTWQHP--LTKEDI--------------- 135 Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS--TKIEFYSRNNTYMHDTPE 328 PG N + + H T + Sbjct: 136 ------------------------------PPGPDNPLGDRWIGFWTDGKAQIGFHGTNQ 165 Query: 329 PILFNNVVRFETSGCVRVRN 348 L + GCVR+RN Sbjct: 166 EELIGQ---AVSHGCVRMRN 182 >gi|300863730|ref|ZP_07108662.1| ErfK/YbiS/YcfS/YnhG-like protein [Oscillatoria sp. PCC 6506] gi|300338298|emb|CBN53808.1| ErfK/YbiS/YcfS/YnhG-like protein [Oscillatoria sp. PCC 6506] Length = 213 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 45/152 (29%), Gaps = 52/152 (34%) Query: 206 EAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 ++ V VG+ +TP + ++ +++ P W P + +++ Sbjct: 99 YVYRKNELQTSFPVAVGKDGWETPTGNFKVMQMIREPSWEHPWT---GEVVP-------- 147 Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS--TKIEFYSRNNTYM 323 PG N + S +N Sbjct: 148 ------------------------------------PGPDNPLGSRWIGFWTDGKNVIGF 171 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 H TP P ++ R + GCVR+ + ++ Sbjct: 172 HGTPNP---ESIGRPASHGCVRMYDKDAQALF 200 >gi|257069799|ref|YP_003156054.1| putative peptidoglycan-binding domain-containing protein [Brachybacterium faecium DSM 4810] gi|256560617|gb|ACU86464.1| putative peptidoglycan-binding domain-containing protein [Brachybacterium faecium DSM 4810] Length = 254 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 2/72 (2%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ V+ L++ L + S F + AV Q GL G+V T Sbjct: 60 RRGDRGAGVKSLQQDLADLRYWLGAVDGS--FGHNTQQAVYALQKAAGLAKDGVVGPKTY 117 Query: 163 EAMNVPVDLRIR 174 A++ V + R Sbjct: 118 SALSRGVQPKRR 129 >gi|291298292|ref|YP_003509570.1| zinc D-Ala-D-Ala carboxypeptidase [Stackebrandtia nassauensis DSM 44728] gi|290567512|gb|ADD40477.1| Zinc D-Ala-D-Ala carboxypeptidase [Stackebrandtia nassauensis DSM 44728] Length = 263 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G + V++L+ R+ + + F +AVK FQ +GL +G D+ Sbjct: 47 RDLASGATGDDVKQLQIRVFGYPEYGKQLAVDGQFGPATTAAVKRFQQAYGLSQTGKGDA 106 Query: 160 STLE 163 +T Sbjct: 107 ATYA 110 >gi|327440155|dbj|BAK16520.1| periplasmic protease [Solibacillus silvestris StLB046] Length = 500 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + + S++ L + G + FD E+A+K +Q + L+ +G++ Sbjct: 403 PSQQYEKEANHASIKTAERILEVLGYEPG--KVDTQFDGATEAALKAYQQDNDLEVTGIL 460 Query: 158 DSSTLEAM 165 T A+ Sbjct: 461 TGDTTYAL 468 >gi|224092310|ref|XP_002309553.1| predicted protein [Populus trichocarpa] gi|222855529|gb|EEE93076.1| predicted protein [Populus trichocarpa] Length = 298 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%) Query: 103 HLGNSSVSVQRLRERLIISGDLDP-----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G+ V +L++ G L + FD +E A+K +Q+ L P+G++ Sbjct: 46 KKGDKVEGVDQLKKFFHHFGYLTHGGLNNDEVDDDYFDETIERALKTYQINFNLKPTGVL 105 Query: 158 DSSTLEAM 165 D+ T+ M Sbjct: 106 DAETVSLM 113 >gi|1351737|sp|P49320|YBP1_STRAU RecName: Full=Uncharacterized protein in bpoA1 3'region; AltName: Full=ORF1 gi|522151|gb|AAC43254.1| hypothetical 118 amino acid truncated protein encoded by ORF1 [Streptomyces aureofaciens] Length = 118 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 9/68 (13%) Query: 102 LHLGNSSVSVQRLR----ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L +S +V+ L+ L G + F +AV+ FQ GL P G+V Sbjct: 43 LSQDDSGDAVKALQCELYNSLAYMG-----PDVDGYFGPKTLAAVQKFQTCTGLKPDGIV 97 Query: 158 DSSTLEAM 165 T + Sbjct: 98 GPLTWAKL 105 >gi|332982349|ref|YP_004463790.1| ErfK/YbiS/YcfS/YnhG family protein [Mahella australiensis 50-1 BON] gi|332700027|gb|AEE96968.1| ErfK/YbiS/YcfS/YnhG family protein [Mahella australiensis 50-1 BON] Length = 266 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +R L+ G+ + +V +++RL G + S L + +++A+ F+ +GL + VD Sbjct: 196 LRLLNPGDRNSAVMEVQKRLKKLGYYNGS--LDGIYGEGMKAALLKFKKDYGLPYTHTVD 253 Query: 159 SSTLEAMNV 167 + T + +N+ Sbjct: 254 AVTYKTLNI 262 >gi|227498873|ref|ZP_03929013.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904325|gb|EEH90243.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 219 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G+ PL +G+ V+ ++ +L G P L+ + +E V++FQ H L Sbjct: 9 GFAAKKNAPLKVGDKGWKVKTVQTKLNTLGLKTP---LTGKYSRDLEKQVRIFQKTHKLP 65 Query: 153 PSGMVDSSTLEAMN 166 +G VD T +N Sbjct: 66 VTGKVDDKTYFRIN 79 >gi|17231422|ref|NP_487970.1| hypothetical protein alr3930 [Nostoc sp. PCC 7120] gi|17133064|dbj|BAB75629.1| alr3930 [Nostoc sp. PCC 7120] Length = 228 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 98 PIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 PI P L NS VSV+ L+ L+ +G P G F E AVK FQ + L G+ Sbjct: 158 PISPNLSFSNSGVSVRVLQRLLVANGYPIPVDG---VFGPVTEIAVKAFQEQQNLTVDGI 214 Query: 157 VDSSTLEAMNV 167 V T + Sbjct: 215 VGVQTWYCLTT 225 >gi|302876620|ref|YP_003845253.1| peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Clostridium cellulovorans 743B] gi|307687294|ref|ZP_07629740.1| peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Clostridium cellulovorans 743B] gi|302579477|gb|ADL53489.1| peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Clostridium cellulovorans 743B] Length = 339 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 8/78 (10%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L G+S V+V L+ + + + F +AVK FQ GL Sbjct: 35 WPT-----LQHGSSGVNVYALQ---YLLNNQSAGITVDGTFGPGTTTAVKNFQTSKGLTS 86 Query: 154 SGMVDSSTLEAMNVPVDL 171 G+V +T + V Sbjct: 87 DGIVGQNTWSKLCVTTQQ 104 >gi|296330698|ref|ZP_06873175.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673955|ref|YP_003865627.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSZ protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296152162|gb|EFG93034.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSX protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412199|gb|ADM37318.1| N-acetylmuramoyl-L-alanine amidase; bacteriophage PBSZ protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 317 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 7/75 (9%) Query: 96 ELPIRPLHLGN---SSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMR 148 LP + + + +V++++ L + G+ + +AVK FQ Sbjct: 237 PLPSGVIKVTSPLTKGTNVKQVQTALAALYFYPDKGAKNHGVDGVYGPKTANAVKRFQSV 296 Query: 149 HGLDPSGMVDSSTLE 163 GL G+ T Sbjct: 297 SGLTADGIYGPKTKA 311 >gi|284050198|ref|ZP_06380408.1| ErfK/YbiS/YcfS/YnhG [Arthrospira platensis str. Paraca] Length = 163 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 51/172 (29%), Gaps = 52/172 (30%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L+ +++ + + N ++ + +GR +TPI H ++ +++ +P W Sbjct: 29 WLQYSPSQLELVIRLGERRVYVYNNTQLVTSYPIAIGRNGWETPIGHYQVIQMIEDPIWE 88 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 P + D++ PG Sbjct: 89 HP---LNGDIIP--------------------------------------------PGGD 101 Query: 306 NAMAS--TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + S N H TP + GCVR+ N L ++ Sbjct: 102 NPLGSHWIGFWTDGTNYIGFHGTPNEETVGQ---AVSHGCVRMFNRDVLALF 150 >gi|317130271|ref|YP_004096553.1| carboxyl-terminal protease [Bacillus cellulosilyticus DSM 2522] gi|315475219|gb|ADU31822.1| carboxyl-terminal protease [Bacillus cellulosilyticus DSM 2522] Length = 489 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 10/88 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L L ++ + + L G DP + F +E AV+ FQ G++ +G++DS T Sbjct: 402 LQLDMNNSHIATAQVILKGLGY-DPQRSDG-YFSKEMEEAVRQFQADMGIEVTGVIDSET 459 Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQ 189 +++Q +N ++ ++ Q Sbjct: 460 --------ADQLQQEVINAIQSREHDNQ 479 >gi|119493547|ref|ZP_01624212.1| hypothetical protein L8106_25887 [Lyngbya sp. PCC 8106] gi|119452601|gb|EAW33783.1| hypothetical protein L8106_25887 [Lyngbya sp. PCC 8106] Length = 194 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 13/113 (11%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQR 113 + + ++ S + + + ILS G + + L LG + +V+ Sbjct: 2 SAMTNIETNGQSTVSTATIPAYTSVQSG-----AILSHG----VELPVLSLGVAGEAVRF 52 Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGMVDSSTLEAM 165 ++RL+ +G G + + +++A++ FQ +G L G++ +T + Sbjct: 53 AQQRLMANGY---RIGFNGQYGPQMKAAIEHFQAYYGGLVVDGILGENTWRGL 102 Score = 44.1 bits (103), Expect = 0.048, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 + + L+ G+ +V+ L+ RL G S + F AV++FQ R L G+ Sbjct: 127 VNMSELNQGHVGDAVECLQLRLYAQGF---SLFIDGDFGLRTREAVEVFQRRESLKIDGI 183 Query: 157 VDSSTLEAM 165 V T + Sbjct: 184 VGVQTWRKL 192 >gi|311279980|ref|YP_003942211.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] gi|308749175|gb|ADO48927.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] Length = 321 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L G+ + +G++ D TP + + ++ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYPPGQNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K N I + Sbjct: 151 ANPTWTPTANIRAR------------YKANGIEL-----------------------PAV 175 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 176 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|301511179|ref|ZP_07236416.1| hypothetical protein AbauAB05_06353 [Acinetobacter baumannii AB058] Length = 415 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 85/253 (33%), Gaps = 64/253 (25%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 A+ FQ +GL P+G + T +A+ V + ++ + + + Y + Sbjct: 167 KAIASFQQMNGLSPTGELTKETWDAL-VAKQNKPAFIEYTI------TDADLKGPYAQ-S 218 Query: 200 IP-AASLEAVENGKVGLRSTV--IVG----------RVDRQTPILHSRINRIMFNPYWVI 246 IP +L+A G + V ++G + T +I+ + Sbjct: 219 IPSDYALQAKMKG--LYYTRVSEMLGEKFHIDETFLKKINPTATFKKVGEKII------V 270 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV--FVEEV------------------ 286 P ++ D+ + + +++ + + + + F + Sbjct: 271 PN--VRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVA 328 Query: 287 --DWNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 W S P NF PG + + I S+ + +H TP P L + Sbjct: 329 RNPWYSYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGL-SKKSFGIHGTPNPSLISKTA- 386 Query: 338 FETSGCVRVRNII 350 + GC+R+ N Sbjct: 387 --SHGCIRLTNWD 397 >gi|284047500|ref|YP_003397839.1| NLP/P60 protein [Acidaminococcus fermentans DSM 20731] gi|283951721|gb|ADB46524.1| NLP/P60 protein [Acidaminococcus fermentans DSM 20731] Length = 232 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL +G+ V+ ++ +L G P G + +E V+ FQ H L +G VD + Sbjct: 30 PLKVGDKGWKVKTVQIKLNAIGMKTPQTGK---YTRELEGQVRNFQKEHRLPATGKVDDT 86 Query: 161 T 161 T Sbjct: 87 T 87 >gi|224476551|ref|YP_002634157.1| putative protease [Staphylococcus carnosus subsp. carnosus TM300] gi|222421158|emb|CAL27972.1| putative protease [Staphylococcus carnosus subsp. carnosus TM300] Length = 489 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+++ +V+ ++ L G + + FD ++SA++ FQ + L+ +G D T Sbjct: 405 LKEGDNNKNVKSIKIGLKALGY--DTGEENNDFDGTLKSAIESFQKDNQLEVNGTFDKET 462 >gi|152975663|ref|YP_001375180.1| spore cortex-lytic enzyme SleB [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024415|gb|ABS22185.1| Spore cortex-lytic enzyme SleB [Bacillus cytotoxicus NVH 391-98] Length = 247 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ T Sbjct: 38 IQRGASGEDVIELQSRLKYNGYYTG--KVDGVFGWGTYWALRNFQQKFGLKVDGLAGPKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|184158889|ref|YP_001847228.1| hypothetical protein ACICU_02569 [Acinetobacter baumannii ACICU] gi|213158089|ref|YP_002320140.1| ErfK/YbiS/YcfS/YnhG family [Acinetobacter baumannii AB0057] gi|215482781|ref|YP_002324982.1| hypothetical protein ABBFA_001071 [Acinetobacter baumannii AB307-0294] gi|239502499|ref|ZP_04661809.1| hypothetical protein AbauAB_09314 [Acinetobacter baumannii AB900] gi|301347442|ref|ZP_07228183.1| hypothetical protein AbauAB0_14373 [Acinetobacter baumannii AB056] gi|301596121|ref|ZP_07241129.1| hypothetical protein AbauAB059_09914 [Acinetobacter baumannii AB059] gi|332854140|ref|ZP_08435198.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter baumannii 6013150] gi|332867906|ref|ZP_08437908.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter baumannii 6013113] gi|332875748|ref|ZP_08443548.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter baumannii 6014059] gi|183210483|gb|ACC57881.1| uncharacterized protein conserved in bacteria [Acinetobacter baumannii ACICU] gi|193077900|gb|ABO12790.2| hypothetical protein A1S_2371 [Acinetobacter baumannii ATCC 17978] gi|213057249|gb|ACJ42151.1| ErfK/YbiS/YcfS/YnhG family [Acinetobacter baumannii AB0057] gi|213988538|gb|ACJ58837.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294] gi|322508867|gb|ADX04321.1| putative exported protein [Acinetobacter baumannii 1656-2] gi|332728196|gb|EGJ59582.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter baumannii 6013150] gi|332733679|gb|EGJ64837.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter baumannii 6013113] gi|332736072|gb|EGJ67099.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter baumannii 6014059] Length = 415 Score = 46.8 bits (110), Expect = 0.007, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 85/253 (33%), Gaps = 64/253 (25%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 A+ FQ +GL P+G + T +A+ V + ++ + + + Y + Sbjct: 167 KAIASFQQMNGLSPTGELTKETWDAL-VAKQNKPAFIEYTI------TDADLKGPYAQ-S 218 Query: 200 IP-AASLEAVENGKVGLRSTV--IVG----------RVDRQTPILHSRINRIMFNPYWVI 246 IP +L+A G + V ++G + T +I+ + Sbjct: 219 IPSDYALQAKMKG--LYYTRVSEMLGEKFHIDEAFLKKINPTATFKKVGEKII------V 270 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV--FVEEV------------------ 286 P ++ D+ + + +++ + + + + F + Sbjct: 271 PN--VRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVA 328 Query: 287 --DWNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 W S P NF PG + + I S+ + +H TP P L + Sbjct: 329 RNPWYSYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGL-SKKSFGIHGTPNPSLISKTA- 386 Query: 338 FETSGCVRVRNII 350 + GC+R+ N Sbjct: 387 --SHGCIRLTNWD 397 >gi|297204540|ref|ZP_06921937.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|197710599|gb|EDY54633.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length = 300 Score = 46.8 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G S V + L+ + P G+ F AVK FQ R GLD G++ + + Sbjct: 239 YGASGADVAE-AQCLLRRAGISPG-GIDGMFGPLTLRAVKTFQDREGLDADGILGPRSWK 296 Query: 164 AM 165 A+ Sbjct: 297 AL 298 >gi|324113536|gb|EGC07511.1| ykud domain-containing protein [Escherichia fergusonii B253] Length = 324 Score = 46.8 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINLAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|291569009|dbj|BAI91281.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 153 Score = 46.8 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 51/172 (29%), Gaps = 52/172 (30%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L+ +++ + + N ++ + +GR +TPI H ++ +++ +P W Sbjct: 19 WLQYSPSQLELVIRLGERRVYVYNNTQLVTSYPIAIGRNGWETPIGHYQVIQMIEDPIWE 78 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 P + D++ PG Sbjct: 79 HP---LNGDIIP--------------------------------------------PGGD 91 Query: 306 NAMAS--TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 N + S N H TP + GCVR+ N L ++ Sbjct: 92 NPLGSHWIGFWTDGTNYIGFHGTPNEETVGQ---AVSHGCVRMFNRDVLALF 140 >gi|50401100|sp|Q90YC2|MMP21_CYNPY RecName: Full=Matrix metalloproteinase-21; Short=MMP-21; Flags: Precursor gi|14787103|dbj|BAB62075.1| matrix metalloproteinase-21 [Cynops pyrrhogaster] Length = 616 Score = 46.8 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 17/118 (14%) Query: 60 DMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLH-LGNSSVSVQRLRER- 117 D P E + + A Q LS+ GW E P+ G SS + L Sbjct: 30 DHSDLQPSPQHQAELVTDLQSA----QQFLSKYGWTE----PVKWEGTSSKNAAELPRYG 81 Query: 118 ---LIISGD----LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L+ G L A++ FQ +GL +G +D ST+ AMN P Sbjct: 82 DADLMQEGASISRYGQEFPLEPTQAPAFVEALRKFQTLNGLPATGKLDDSTIAAMNKP 139 >gi|330828414|ref|YP_004391366.1| peptidoglycan-binding LysM [Aeromonas veronii B565] gi|328803550|gb|AEB48749.1| Peptidoglycan-binding LysM [Aeromonas veronii B565] Length = 308 Score = 46.8 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 58/205 (28%), Gaps = 49/205 (23%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRS-TVIVGRVDRQTPI-LHSRINRIMFNPYWVI 246 +++N+ L GK + + +G++ TP + + R P W Sbjct: 95 PDAPREGIVLNVAEMRLYYYPKGKKVVEVLPIGIGQLGTDTPENWVTSVQRKKAGPTWT- 153 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 + +Y + G N Sbjct: 154 ----------PTAKMHAEYAAR------------------------GESLPAVWPAGPDN 179 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 M + H T F +R + GCVR+RN D+ +L K P +R Sbjct: 180 PMGLFALYIGKMYAI--HGTNAN--FGIGLR-VSHGCVRLRN-DDIA-YLFKQVPVGTRV 232 Query: 367 H-----IEEVVKTRKTTPVKLATEV 386 I+ ++ +++ + Sbjct: 233 QFVNQPIKASLEPNGVRYLEVHQPL 257 >gi|302532773|ref|ZP_07285115.1| predicted protein [Streptomyces sp. C] gi|302441668|gb|EFL13484.1| predicted protein [Streptomyces sp. C] Length = 141 Score = 46.8 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 25/106 (23%) Query: 89 LSRGG-WPELPIRP-------LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 +SRGG W +P + G+S +V L+ L I +D S + A E+ Sbjct: 43 VSRGGYWTAVPATSGGSTSCVMGRGSSGPAVGELQLALAICYGMDTGGSDS-IYGAKTEA 101 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 AV+ Q G G+ +T N++ + Sbjct: 102 AVRSLQSATGQTADGIYGPNTR----------------NVVEWRWY 131 >gi|262372118|ref|ZP_06065397.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter junii SH205] gi|262312143|gb|EEY93228.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter junii SH205] Length = 402 Score = 46.8 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 84/248 (33%), Gaps = 54/248 (21%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 A+ FQ +GL P+G + T +A+ V + ++ + E + Y + Sbjct: 154 KAIASFQQMNGLTPTGELTKETWDAL-VAKQTKPAYVEYTI------TEADLKGPYAE-S 205 Query: 200 IP-AASLEAVENGKVGLRSTVIVG----------RVDRQTPILHSRINRIMFNPYWVI-- 246 IP +L+A G R T ++G + T +I+ + Sbjct: 206 IPSDYALQAKMKGLYYTRVTEMLGEKFHMDENFLKKINPTATFKKAGEKIIVA---NVRN 262 Query: 247 --PRSIIQKDMMALLRQDPQYLKDNNIHMI---------------DEKGKEVFVEEVDWN 289 P I ++A YL ++ MI K V V + W Sbjct: 263 DLPEDIHL--IVAHKGARQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVAKNPWY 320 Query: 290 SPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 S P NF PG + + I S+ + +H TP P L + + G Sbjct: 321 SYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGL-SKKSFGIHGTPSPSLISKTA---SHG 376 Query: 343 CVRVRNII 350 C+R+ N Sbjct: 377 CIRLTNWD 384 >gi|218548643|ref|YP_002382434.1| hypothetical protein EFER_1277 [Escherichia fergusonii ATCC 35469] gi|218356184|emb|CAQ88801.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469] Length = 326 Score = 46.8 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L GK + +G++ D TP + + ++ Sbjct: 93 LQTLLP-DAPREGIVINLAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 151 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 152 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 176 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 177 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 223 >gi|227113507|ref|ZP_03827163.1| hypothetical protein PcarbP_11112 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 357 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 57/205 (27%), Gaps = 49/205 (23%) Query: 189 QKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVI 246 +++N L G K + + +G + + TPI + + R P W Sbjct: 92 PDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGELGKDTPINWTTSVQRKKAGPTWT- 150 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 + +Y G N Sbjct: 151 ----------PTAKMHAEYAAR------------------------GETLQKVFPAGPDN 176 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 M + + H T F +R + GCVR+R+ D +L + P +R Sbjct: 177 PMGLYALYIGNLYAI--HGTNAN--FGIGLR-VSHGCVRLRD--DDIKYLFNNVPVGTRV 229 Query: 367 HI-----EEVVKTRKTTPVKLATEV 386 + V+ + V++ + Sbjct: 230 QFINEPVKATVEPDGSRYVEVHNPL 254 >gi|71278853|ref|YP_269370.1| CHAP domain-containing protein [Colwellia psychrerythraea 34H] gi|71144593|gb|AAZ25066.1| CHAP domain protein [Colwellia psychrerythraea 34H] Length = 265 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 8/74 (10%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDA-YVESAVKLFQMRH----G--LDPSGMVDSS 160 V +L++ L +G + K FD ++AV LFQ++H G L P G++ + Sbjct: 11 DPEVIKLQQLLSSNGYFEEIKPSHGLFDGITFDNAV-LFQLQHIYKDGDPLKPDGVIGAK 69 Query: 161 TLEAMNVPVDLRIR 174 T A+ P + R Sbjct: 70 TWWALKNPSGEKQR 83 >gi|28373183|ref|NP_783826.1| putative N-acetylmuramoyl-L-alanine amidase [Clostridium tetani E88] gi|28208767|gb|AAO37449.1|AF528097_55 putative N-acetylmuramoyl-L-alanine amidase [Clostridium tetani E88] Length = 227 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +V+ ++E+L+ G S G +A+K FQ +G+ G+V T + Sbjct: 167 KDNNVRIIQEKLMEKGYNVGSYGADGYLGGTTLNAIKSFQRDNGILVDGIVGRDTWGRL 225 >gi|172037339|ref|YP_001803840.1| hypothetical protein cce_2426 [Cyanothece sp. ATCC 51142] gi|171698793|gb|ACB51774.1| unknown [Cyanothece sp. ATCC 51142] Length = 198 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 52/166 (31%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 ++++N+ + A ++ +V V +G+ +TP + +++ +P W Sbjct: 73 THLVLNLKERRVYAYQDDQVIANYPVAIGKPGWETPRGDFSVIQMVEDPQW--------- 123 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 ++P V G + + I Sbjct: 124 -------KNP-------------WNGRVS------------------AAGPNSPLGERWI 145 Query: 314 EFYSRNNTY--MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 F+ Y H TP + + GCVR+RN ++ L Sbjct: 146 GFWREGGKYIGFHGTPGEHVMGQ---AVSHGCVRMRNRDVKALYEL 188 >gi|330826784|ref|YP_004390087.1| peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans K601] gi|329312156|gb|AEB86571.1| Peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans K601] Length = 342 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 PE + L S V+ L+ RL + L + + V+ FQ HGL + Sbjct: 44 PEPLAQELRHRMESPLVRELQVRLRHAKYLALYD-VDDRYGLKTRETVRKFQKDHGLRET 102 Query: 155 GMVDSSTLEAM 165 G+VD +T + + Sbjct: 103 GVVDQATWDRL 113 >gi|307273110|ref|ZP_07554356.1| peptidase [Enterococcus faecalis TX0855] gi|306510095|gb|EFM79119.1| peptidase [Enterococcus faecalis TX0855] Length = 477 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 389 KTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLLVTGEIDN 446 Query: 160 ST 161 T Sbjct: 447 ET 448 >gi|288554111|ref|YP_003426046.1| carboxy-terminal processing protease [Bacillus pseudofirmus OF4] gi|288545271|gb|ADC49154.1| carboxy-terminal processing protease [Bacillus pseudofirmus OF4] Length = 487 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 8/87 (9%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L L + ++ + L G +D E AV+ FQ GL +G +D Sbjct: 396 TLTLDMMNEQIRSAQTMLKGLG--HEPGRTDGYYDEQTEQAVRAFQKAQGLSETGDIDEE 453 Query: 161 TLEAMN------VPVDLRIRQLQVNLM 181 T A+ V + +QLQ + Sbjct: 454 TAGALQQIIVDEVRDESNDKQLQTAIE 480 >gi|256965014|ref|ZP_05569185.1| carboxyl-terminal protease [Enterococcus faecalis HIP11704] gi|256955510|gb|EEU72142.1| carboxyl-terminal protease [Enterococcus faecalis HIP11704] Length = 480 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ S +Q L L + P + + A ++AV Q ++GL +G +D+ Sbjct: 392 KTLKEGDQSEDIQNLNAILAVLAY--PVDENNANYTAETKAAVSDLQQKNGLLVTGEIDN 449 Query: 160 ST 161 T Sbjct: 450 ET 451 >gi|35210436|dbj|BAC87914.1| conserved hypothetical protein [Acinetobacter baumannii] Length = 415 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 85/253 (33%), Gaps = 64/253 (25%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 A+ FQ +GL P+G + T +A+ V + ++ + + + Y + Sbjct: 167 KAIASFQQMNGLSPTGELTKETWDAL-VAKQNKPAFIEYTI------TDADLKGPYAQ-S 218 Query: 200 IP-AASLEAVENGKVGLRSTV--IVG----------RVDRQTPILHSRINRIMFNPYWVI 246 IP +L+A G + V ++G + T +I+ + Sbjct: 219 IPSDYALQAKMKG--LYYTRVSEMLGEKFHIDEAFLKKINPTATFKKVGEKII------V 270 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV--FVEEV------------------ 286 P ++ D+ + + +++ + + + + F + Sbjct: 271 PN--VRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVA 328 Query: 287 --DWNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 W S P NF PG + + I S+ + +H TP P L + Sbjct: 329 RNPWYSYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGL-SKKSFGIHGTPNPSLISKTA- 386 Query: 338 FETSGCVRVRNII 350 + GC+R+ N Sbjct: 387 --SHGCIRLTNWD 397 >gi|258514282|ref|YP_003190504.1| glycoside hydrolase family 18 [Desulfotomaculum acetoxidans DSM 771] gi|257777987|gb|ACV61881.1| glycoside hydrolase family 18 [Desulfotomaculum acetoxidans DSM 771] Length = 426 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L LG+ V L+ +L ++G + +S F AV F+ + L G Sbjct: 31 SVTPGNLRLGDRGPDVTLLQTKLKVAGFY-QGEKVSGYFGLNTLFAVSKFEKANRLRVDG 89 Query: 156 MVDSS---TLEAMNVPVDLRIRQLQV 178 +VD+ L+ + +++++ + Sbjct: 90 IVDAEEWIALQKLTAIPADKLKKMVL 115 >gi|84495100|ref|ZP_00994219.1| hypothetical protein JNB_09879 [Janibacter sp. HTCC2649] gi|84384593|gb|EAQ00473.1| hypothetical protein JNB_09879 [Janibacter sp. HTCC2649] Length = 282 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + G S +V ++ L G + G +F ++AV FQ GL G+V Sbjct: 7 PWKTASQGAVSQAVSGIQYLLKAHGHAVATDG---SFGPGTKAAVIAFQKAKGLPADGVV 63 Query: 158 DSSTLEAM 165 + T + + Sbjct: 64 GTVTWQKL 71 Score = 42.5 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 7/73 (9%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 WP L I + LG+ +V+ ++ + + +F ++AV+ +Q Sbjct: 211 DWPAL-IVTVKLGDKGEAVKAVQT------LVPGGLTVDGSFGPSTDAAVRNYQTMFSPP 263 Query: 153 PSGMVDSSTLEAM 165 G+V +T + Sbjct: 264 SDGIVGPNTWHTL 276 >gi|194334671|ref|YP_002016531.1| peptidoglycan-binding domain 1 protein [Prosthecochloris aestuarii DSM 271] gi|194312489|gb|ACF46884.1| Peptidoglycan-binding domain 1 protein [Prosthecochloris aestuarii DSM 271] Length = 268 Score = 46.4 bits (109), Expect = 0.008, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 4/65 (6%) Query: 102 LHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V L+ L +G L G F + AVK Q + GL G+V Sbjct: 4 LKKGSRKERAVILLQIMLAEAGLLSSVDGK---FGQATDEAVKALQRQSGLVVDGIVGEK 60 Query: 161 TLEAM 165 T + Sbjct: 61 TWTTL 65 >gi|297545506|ref|YP_003677808.1| spore cortex-lytic enzyme [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843281|gb|ADH61797.1| spore cortex-lytic enzyme [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 236 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GN+ V +++ RL G + + F AV+ FQ +GL+ +G+VD T A Sbjct: 42 GNTGSDVAKVQARLKDWGYYQGA--VDGFFGVRTWLAVRKFQAYNGLNVTGIVDDDTKVA 99 Query: 165 M 165 + Sbjct: 100 L 100 >gi|150014928|ref|YP_001307182.1| peptidoglycan binding domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149901393|gb|ABR32226.1| Peptidoglycan-binding domain 1 protein [Clostridium beijerinckii NCIMB 8052] Length = 1061 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P PL +G+S +V+ ++ +L L P F+ AVK FQ L + Sbjct: 944 PGEPLTIGSSGPAVRTIQNQLNRIARNYPLIPKVAEDGQFNQKTADAVKTFQQIFTLPQT 1003 Query: 155 GMVDSSTLE 163 G+VD +T Sbjct: 1004 GIVDYATWY 1012 >gi|158311949|ref|YP_001504457.1| peptidoglycan binding domain-containing protein [Frankia sp. EAN1pec] gi|158107354|gb|ABW09551.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EAN1pec] Length = 408 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P R L G V+ L L G + FDA SAV+ +Q + GL G V Sbjct: 167 PYRTLATGTVGSDVKELEASLQELGY--TGFAVDDTFDAATASAVQAWQAKSGLPAQGTV 224 Query: 158 DSS 160 Sbjct: 225 SPD 227 >gi|295696531|ref|YP_003589769.1| spore cortex-lytic enzyme [Bacillus tusciae DSM 2912] gi|295412133|gb|ADG06625.1| spore cortex-lytic enzyme [Bacillus tusciae DSM 2912] Length = 239 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ V V L+ RL + + F AV+ FQ GL G+ +T A Sbjct: 39 GSRGVDVTELQGRLRYVNYYHGA--IDGVFGWQTYWAVRNFQRDVGLRVDGIAGPATKAA 96 Query: 165 M 165 + Sbjct: 97 L 97 >gi|4455296|emb|CAB36831.1| hypothetical protein [Arabidopsis thaliana] gi|7268071|emb|CAB78409.1| hypothetical protein [Arabidopsis thaliana] Length = 432 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDP 153 ++ R L +G+ VQ L+E L+ G + + +F + SAVK +Q G+ Sbjct: 171 KKIKRRILKVGSEGDDVQALQEALLKLGFYSGEEDMEFSSFSSGTASAVKTWQASLGVRE 230 Query: 154 SGMVDSSTLEAM 165 G++ + L+ + Sbjct: 231 DGVMTAELLQRL 242 >gi|157821123|ref|NP_001099778.1| matrix metalloproteinase-21 [Rattus norvegicus] gi|149061331|gb|EDM11754.1| matrix metalloproteinase 21 (predicted) [Rattus norvegicus] Length = 568 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 31/135 (22%), Positives = 45/135 (33%), Gaps = 34/135 (25%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL 102 + + + D P+ + IA A Q+ L + GW E+ Sbjct: 15 WLVTPQPAQPERLFHSRDRSDLEPSPLSRAKPIADLHAA----QNFLLKYGWSEVSSPK- 69 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 S G+ V F + AV+ FQ + L SG +DS TL Sbjct: 70 -----------------------ESAGVPVGF--TLAQAVRRFQKANRLPASGKLDSPTL 104 Query: 163 EAMNVP----VDLRI 173 AMN P D R+ Sbjct: 105 AAMNKPRCGVPDTRL 119 >gi|30682566|ref|NP_193103.2| PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5); heat shock protein binding / unfolded protein binding [Arabidopsis thaliana] gi|119360137|gb|ABL66797.1| At4g13670 [Arabidopsis thaliana] gi|332657911|gb|AEE83311.1| protein plastid transcriptionally active 5 [Arabidopsis thaliana] Length = 387 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDP 153 ++ R L +G+ VQ L+E L+ G + + +F + SAVK +Q G+ Sbjct: 171 KKIKRRILKVGSEGDDVQALQEALLKLGFYSGEEDMEFSSFSSGTASAVKTWQASLGVRE 230 Query: 154 SGMVDSSTLEAM 165 G++ + L+ + Sbjct: 231 DGVMTAELLQRL 242 >gi|260556712|ref|ZP_05828930.1| ErfK/YbiS/YcfS/YnhG family [Acinetobacter baumannii ATCC 19606] gi|260409971|gb|EEX03271.1| ErfK/YbiS/YcfS/YnhG family [Acinetobacter baumannii ATCC 19606] Length = 418 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 85/253 (33%), Gaps = 64/253 (25%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 A+ FQ +GL P+G + T +A+ V + ++ + + + Y + Sbjct: 170 KAIASFQQMNGLSPTGELTKETWDAL-VAKQNKPAFIEYTI------TDADLKGPYAQ-S 221 Query: 200 IP-AASLEAVENGKVGLRSTV--IVG----------RVDRQTPILHSRINRIMFNPYWVI 246 IP +L+A G + V ++G + T +I+ + Sbjct: 222 IPSDYALQAKMKG--LYYTRVSEMLGEKFHIDEAFLKKINPTATFKKVGEKII------V 273 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV--FVEEV------------------ 286 P ++ D+ + + +++ + + + + F + Sbjct: 274 PN--VRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVA 331 Query: 287 --DWNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 W S P NF PG + + I S+ + +H TP P L + Sbjct: 332 RNPWYSYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGL-SKKSFGIHGTPNPSLISKTA- 389 Query: 338 FETSGCVRVRNII 350 + GC+R+ N Sbjct: 390 --SHGCIRLTNWD 400 >gi|169795243|ref|YP_001713036.1| hypothetical protein ABAYE1105 [Acinetobacter baumannii AYE] gi|169148170|emb|CAM86033.1| conserved hypothetical protein; putative exported protein [Acinetobacter baumannii AYE] Length = 418 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 85/253 (33%), Gaps = 64/253 (25%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 A+ FQ +GL P+G + T +A+ V + ++ + + + Y + Sbjct: 170 KAIASFQQMNGLSPTGELTKETWDAL-VAKQNKPAFIEYTI------TDADLKGPYAQ-S 221 Query: 200 IP-AASLEAVENGKVGLRSTV--IVG----------RVDRQTPILHSRINRIMFNPYWVI 246 IP +L+A G + V ++G + T +I+ + Sbjct: 222 IPSDYALQAKMKG--LYYTRVSEMLGEKFHIDEAFLKKINPTATFKKVGEKII------V 273 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV--FVEEV------------------ 286 P ++ D+ + + +++ + + + + F + Sbjct: 274 PN--VRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVA 331 Query: 287 --DWNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 W S P NF PG + + I S+ + +H TP P L + Sbjct: 332 RNPWYSYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGL-SKKSFGIHGTPNPSLISKTA- 389 Query: 338 FETSGCVRVRNII 350 + GC+R+ N Sbjct: 390 --SHGCIRLTNWD 400 >gi|325497054|gb|EGC94913.1| hypothetical protein ECD227_1151 [Escherichia fergusonii ECD227] Length = 324 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINLAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 150 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 221 >gi|147812598|emb|CAN66084.1| hypothetical protein VITISV_024635 [Vitis vinifera] Length = 353 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKG-LSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G+ + L++ G L G ++ FD +ESAV +Q + GL +G DS T Sbjct: 55 RRGSRISGMAELKKYFNRFGYLGFQDGNVTDVFDTRLESAVAAYQAKLGLQVTGRFDSET 114 Query: 162 LEAM 165 L M Sbjct: 115 LSQM 118 >gi|291085508|ref|ZP_06571091.1| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Citrobacter youngae ATCC 29220] gi|291071175|gb|EFE09284.1| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Citrobacter youngae ATCC 29220] Length = 323 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + G + +G++ D TP + + ++ Sbjct: 94 LQTLLP-DAPREGIVINLAELRLYYYQPGTNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 152 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K N I + Sbjct: 153 ANPTWTPTANIRAR------------YKANGIDL-----------------------PAV 177 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 178 VPAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 224 >gi|254409634|ref|ZP_05023415.1| ErfK/YbiS/YcfS/YnhG family [Microcoleus chthonoplastes PCC 7420] gi|196183631|gb|EDX78614.1| ErfK/YbiS/YcfS/YnhG family [Microcoleus chthonoplastes PCC 7420] Length = 237 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 52/163 (31%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++V++ A + + + V VG+ +TP + ++ R NP W P I D Sbjct: 112 RLVVDLSDAKVYSYWGEQEIASYPVAVGQPGWETPTGNFKVLRKQRNPIWRQP---ITGD 168 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ G N + I Sbjct: 169 LIPT--------------------------------------------GPDNPLGDRWIG 184 Query: 315 FYSR--NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 F+S + H T + L V + GC+R+RN ++ Sbjct: 185 FWSDEYHQIGFHGTNDEDLVGQPV---SHGCLRMRNADIQALY 224 >gi|312792945|ref|YP_004025868.1| erfk/ybis/ycfs/ynhg family protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180085|gb|ADQ40255.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 223 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R ++ G++ V ++ RL G S + + A +E A+ LFQ ++ L + + Sbjct: 154 RTIYPGDTGEDVMAVQRRLKELGFYSGS--IDGKYGAALEYAINLFQKKNKLSVTNKITP 211 Query: 160 STLEAM 165 L M Sbjct: 212 YLLRKM 217 >gi|307265107|ref|ZP_07546667.1| spore cortex-lytic enzyme [Thermoanaerobacter wiegelii Rt8.B1] gi|326390828|ref|ZP_08212380.1| spore cortex-lytic enzyme [Thermoanaerobacter ethanolicus JW 200] gi|306919905|gb|EFN50119.1| spore cortex-lytic enzyme [Thermoanaerobacter wiegelii Rt8.B1] gi|325993087|gb|EGD51527.1| spore cortex-lytic enzyme [Thermoanaerobacter ethanolicus JW 200] Length = 236 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 + + + L+ GN+ V +++ RL G + + F AV+ FQ + Sbjct: 27 AAYDLTKTAMSNLYWGNTGSDVAKVQARLKDWGYYTGA--VDGFFGVRTWLAVRKFQAYN 84 Query: 150 GLDPSGMVDSSTLEAM 165 GL +G+VD T A+ Sbjct: 85 GLRVTGIVDDDTKVAL 100 >gi|298346070|ref|YP_003718757.1| hypothetical protein HMPREF0573_10944 [Mobiluncus curtisii ATCC 43063] gi|298236131|gb|ADI67263.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063] Length = 559 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + V+ +R RL + L+ S+ FD +AV FQ R GL SG+VD +T Sbjct: 346 GWNGTKVREVRARLGVGVPLNA----SMTFDRATRNAVVRFQRRSGLPASGVVDYATWVR 401 Query: 165 MNVPV 169 + Sbjct: 402 LTGRP 406 >gi|225849285|ref|YP_002729449.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225643963|gb|ACN99013.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 460 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 62/184 (33%), Gaps = 47/184 (25%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA---VENGKVGLRSTVIVGRV 224 P D+R Q+ + R + L + + +NI L +E+ + + +G Sbjct: 249 PFDIRKNQIIIVPFR-RILPIKNFSYGTIYININEKRLYYPVLIEDKSYIITFPIGIGAD 307 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 + Q+P+ +I + NP W P SI +K+ Sbjct: 308 EAQSPVGDFKITQKRKNPAWYPPESI-RKE------------------------------ 336 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 P+ PG N + + + + + MH T + V + GC+ Sbjct: 337 --------QPDLPPVFPPGPDNPLGTRAMRLGNT-SFLMHGTNKEYGIGMKV---SHGCI 384 Query: 345 RVRN 348 R+ N Sbjct: 385 RMYN 388 >gi|56963123|ref|YP_174850.1| N-acetylmuramoyl-L-alanine amidase [Bacillus clausii KSM-K16] gi|56909362|dbj|BAD63889.1| N-acetylmuramoyl-L-alanine amidase [Bacillus clausii KSM-K16] Length = 301 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R + G + L+ L ++G F E AV+ FQ GL G+ Sbjct: 236 ARNVRKGAKGNLTRVLQALLYMAG--HNPGPFDGVFGNGTEKAVRAFQRDKGLGVDGIAG 293 Query: 159 SSTLEAM 165 +T A+ Sbjct: 294 KNTWRAL 300 >gi|256390233|ref|YP_003111797.1| peptidoglycan-binding protein [Catenulispora acidiphila DSM 44928] gi|256356459|gb|ACU69956.1| Peptidoglycan-binding domain 1 protein [Catenulispora acidiphila DSM 44928] Length = 410 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 4/81 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 RPL +G + V+ L G + G S + A +AVK +Q GLD +G VD Sbjct: 151 RPLTVGTTGADVKEFETDLAALGYTGFTPGTS--YTADTAAAVKKWQAAVGLDQTGNVDP 208 Query: 160 STLEAMNVPVDLRIRQLQVNL 180 + +A +RI L +L Sbjct: 209 A--QAAVTSGPIRIAALHTSL 227 >gi|325981388|ref|YP_004293790.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas sp. AL212] gi|325530907|gb|ADZ25628.1| ErfK/YbiS/YcfS/YnhG family protein [Nitrosomonas sp. AL212] Length = 331 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 65/182 (35%), Gaps = 57/182 (31%) Query: 185 KLLEQK-----MGLRYVL---------VNIPAASLEAV---ENGK--VGLRSTVIVGRVD 225 + L + + RY++ +N+P + + G+ V +GR+D Sbjct: 75 RWLPEDGVTVTLPSRYIIPQAERKGLVLNLPEMRIYYFPEPKKGEKPTVTTHPVGIGRMD 134 Query: 226 RQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEE 285 TP+ SRI +P W+ P+S+ + Sbjct: 135 WVTPLGISRIIEKKKDPTWIPPKSL----------------------------------Q 160 Query: 286 VDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCV 344 +D + P + PG N + + + +Y +H T +P F +R ++GCV Sbjct: 161 MDRIANGEPPYPSIVPPGPTNPLGRHAMRLSIGSGSYLIHGTIKP--FGVGMR-VSAGCV 217 Query: 345 RV 346 R+ Sbjct: 218 RM 219 >gi|255658560|ref|ZP_05403969.1| endopeptidase, cell wall lytic activity [Mitsuokella multacida DSM 20544] gi|260849364|gb|EEX69371.1| endopeptidase, cell wall lytic activity [Mitsuokella multacida DSM 20544] Length = 254 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L L +S V L+++L G K + F + V FQ + L +G+V+++T Sbjct: 30 LKLNSSGRDVMLLQQKLQNVGY--TIKDIDGIFGEETQRIVTQFQKDNNLRATGVVNNAT 87 Query: 162 LEAM 165 A+ Sbjct: 88 WRAL 91 >gi|291521337|emb|CBK79630.1| FOG: Glucan-binding domain (YG repeat) [Coprococcus catus GD/7] Length = 645 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 22/35 (62%) Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + V +AVK FQ RHGL+ +G+ D +T +A+ Sbjct: 448 GAEYTRRVFNAVKSFQSRHGLEATGITDLATWKAL 482 >gi|167039266|ref|YP_001662251.1| cell wall hydrolase SleB [Thermoanaerobacter sp. X514] gi|256751676|ref|ZP_05492551.1| spore cortex-lytic enzyme [Thermoanaerobacter ethanolicus CCSD1] gi|300913906|ref|ZP_07131223.1| spore cortex-lytic enzyme [Thermoanaerobacter sp. X561] gi|307725409|ref|YP_003905160.1| spore cortex-lytic enzyme [Thermoanaerobacter sp. X513] gi|166853506|gb|ABY91915.1| cell wall hydrolase, SleB [Thermoanaerobacter sp. X514] gi|256749485|gb|EEU62514.1| spore cortex-lytic enzyme [Thermoanaerobacter ethanolicus CCSD1] gi|300890591|gb|EFK85736.1| spore cortex-lytic enzyme [Thermoanaerobacter sp. X561] gi|307582470|gb|ADN55869.1| spore cortex-lytic enzyme [Thermoanaerobacter sp. X513] Length = 236 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 + + + L+ GN+ V +++ RL G + + F AV+ FQ + Sbjct: 27 AAYDLTKTAMSNLYWGNTGSDVAKVQARLKDWGYYTGA--VDGFFGVRTWLAVRKFQAYN 84 Query: 150 GLDPSGMVDSSTLEAM 165 GL +G+VD T A+ Sbjct: 85 GLRVTGIVDDDTKVAL 100 >gi|308071058|ref|YP_003872663.1| Periplasmic protease [Paenibacillus polymyxa E681] gi|305860337|gb|ADM72125.1| Periplasmic protease [Paenibacillus polymyxa E681] Length = 488 Score = 46.4 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 8/91 (8%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L +S V+ + L G + FD ES+V FQ + L SG++D+ Sbjct: 391 KSLKYNMNSSDVKNAQIILQGLGYRPGREDG--YFDKVTESSVIAFQKQAKLTASGIIDA 448 Query: 160 STLEAMNVPVDLRIR------QLQVNLMRIK 184 T AM + +IR QL+ + I+ Sbjct: 449 KTAAAMEAKLIKKIRDPKNDNQLKQGIEEIR 479 >gi|7480279|pir||T34747 muramoyl-pentapeptide carboxypeptidase - Streptomyces coelicolor (fragment) Length = 189 Score = 46.4 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST---LEAM 165 + A +AVK FQ +GL G+ +T + A+ Sbjct: 14 SYDGQYGARTAAAVKKFQADYGLGADGVAGPATFSKIYAL 53 >gi|325916291|ref|ZP_08178569.1| putative peptidoglycan binding protein [Xanthomonas vesicatoria ATCC 35937] gi|325537462|gb|EGD09180.1| putative peptidoglycan binding protein [Xanthomonas vesicatoria ATCC 35937] Length = 268 Score = 46.4 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGL 151 P + + +G SS V++++ L G + ++ AV +Q GL Sbjct: 38 PIVDDGTIRIGESSDIVRQVQRTLNAEGFRGADNQPLQEDGVYRLSMQPAVINYQQARGL 97 Query: 152 DPSGMVDSSTLEAM 165 P+G +D +TL+ + Sbjct: 98 SPTGDIDPATLQQI 111 >gi|167036615|ref|YP_001664193.1| cell wall hydrolase SleB [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115042|ref|YP_004185201.1| spore cortex-lytic enzyme [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855449|gb|ABY93857.1| cell wall hydrolase, SleB [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928133|gb|ADV78818.1| spore cortex-lytic enzyme [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 236 Score = 46.4 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 + + + L+ GN+ V +++ RL G + + F AV+ FQ + Sbjct: 27 AAYDLTKTAMSNLYWGNTGSDVAKVQARLKDWGYYTGA--VDGFFGVRTWLAVRKFQAYN 84 Query: 150 GLDPSGMVDSSTLEAM 165 GL +G+VD T A+ Sbjct: 85 GLRVTGIVDDDTKVAL 100 >gi|114567574|ref|YP_754728.1| hypothetical protein Swol_2063 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338509|gb|ABI69357.1| hypothetical protein Swol_2063 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 434 Score = 46.4 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 3/71 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G + V ++++LI G + + +D V FQ H L+ +G+ + T Sbjct: 358 LKEGFTGDDVLEMQQQLIALGY---NCQANKVYDGQTRDMVAEFQSDHRLEVTGIATAET 414 Query: 162 LEAMNVPVDLR 172 + R Sbjct: 415 RALLQGVTGGR 425 >gi|328554309|gb|AEB24801.1| N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens TA208] gi|328912705|gb|AEB64301.1| N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens LL3] Length = 250 Score = 46.4 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 4/63 (6%) Query: 107 SSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 V +++ L + + G+ + +AVK FQ +GL G+ T Sbjct: 183 KGEKVTQVQRALAAAYFYPDKHAKNHGIDGIYGPKTANAVKRFQTMNGLQADGIYGPKTK 242 Query: 163 EAM 165 + + Sbjct: 243 DKL 245 >gi|251799935|ref|YP_003014666.1| peptidoglycan-binding protein [Paenibacillus sp. JDR-2] gi|247547561|gb|ACT04580.1| Peptidoglycan-binding domain 1 protein [Paenibacillus sp. JDR-2] Length = 336 Score = 46.4 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + ++ L G ++ +D VK +Q HGL +G VDS T ++ Sbjct: 48 GAKGPDIYVIQGMLKGIGSYSG--KINGYYDNTTVRGVKHYQKTHGLPVTGSVDSKTFQS 105 Query: 165 MNVPVDL 171 + + Sbjct: 106 ITYSYNT 112 >gi|297583387|ref|YP_003699167.1| carboxyl-terminal protease [Bacillus selenitireducens MLS10] gi|297141844|gb|ADH98601.1| carboxyl-terminal protease [Bacillus selenitireducens MLS10] Length = 496 Score = 46.4 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 5/77 (6%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL +S V+ + L +G DP + FD AV+ FQ GLD +G + Sbjct: 408 PLVFDMNSEHVESAQVMLAATGY-DPGREDG-YFDEGTVEAVEAFQEAEGLDVTGEIGEE 465 Query: 161 TLEAMNVPVDLRIRQLQ 177 T + + ++ I Q+Q Sbjct: 466 TADRLQ---EVLIEQIQ 479 >gi|146311284|ref|YP_001176358.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter sp. 638] gi|145318160|gb|ABP60307.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter sp. 638] Length = 317 Score = 46.4 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L GK + +G++ D TP + + ++ Sbjct: 90 LQTLLP-DAPREGLVINLAELRLYYYPPGKKEVTVYPIGIGQLGGDTLTPTMVTTVSDKR 148 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W P + I+ K + + + V Sbjct: 149 ANPTWT-PTANIR---------------------ARYKAQGIDLPAVV------------ 174 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 175 -PAGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 220 >gi|254520785|ref|ZP_05132841.1| peptidoglycan-binding domain 1 protein [Clostridium sp. 7_2_43FAA] gi|226914534|gb|EEH99735.1| peptidoglycan-binding domain 1 protein [Clostridium sp. 7_2_43FAA] Length = 605 Score = 46.4 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P L +G+ + +V+ ++E+L + F E +VK+FQ L P Sbjct: 324 PGYSLRIGDVNENVKVIQEQLNRVSKNFPAIPRIYPEDGRFGKETEDSVKVFQRVFNLTP 383 Query: 154 SGMVDSSTLE 163 G+V +T Sbjct: 384 DGVVGRATWY 393 Score = 39.4 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 14/74 (18%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLD--------PSKGLSVAFDAYVESAVKLFQMRH 149 P L G V+ L+ G L P+ + F + A+ FQ Sbjct: 434 PGYLLKYGARGEKVRELQ------GYLSEISKSYNIPNVSVDGIFGNVTKDAIIKFQRLF 487 Query: 150 GLDPSGMVDSSTLE 163 GL G+V +T Sbjct: 488 GLSTDGIVGLATWN 501 >gi|152977393|ref|YP_001376910.1| carboxyl-terminal protease [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026145|gb|ABS23915.1| carboxyl-terminal protease [Bacillus cytotoxicus NVH 391-98] Length = 478 Score = 46.4 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 8/87 (9%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ ++ L G + + F ESAVK FQ + L+ +G +D Sbjct: 389 KTLSYNSNDVQVKHAQQMLKSLGYVPGREDG--YFSKETESAVKAFQNANQLEATGKLDK 446 Query: 160 STLEAMNVPVDLRIR------QLQVNL 180 T EA+ + +IR QLQ L Sbjct: 447 KTAEAIQNKIIEKIRSGENDLQLQAAL 473 >gi|139439483|ref|ZP_01772915.1| Hypothetical protein COLAER_01941 [Collinsella aerofaciens ATCC 25986] gi|133775036|gb|EBA38856.1| Hypothetical protein COLAER_01941 [Collinsella aerofaciens ATCC 25986] Length = 301 Score = 46.4 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 12/84 (14%) Query: 94 WPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W L LG+ VQ L+ L + G F + E+A++ Sbjct: 65 WSALVDASYKLGDRTLYLRMPNFHGADVQALQRALNVLGFACGEDDG--YFGPHTEAALQ 122 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNV 167 FQ GL GM T +N Sbjct: 123 QFQENVGLFADGMAFQDTYAYINR 146 Score = 39.4 bits (91), Expect = 0.98, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 + P+ G +V+ ++ RL+ G +D ++ F A E AV F++ GL Sbjct: 1 MEPITTGMQGAAVEDVQSRLLQLGYTIDAAEVTDKYFGATTEQAVSTFRLDSGLAA 56 >gi|148242241|ref|YP_001227398.1| hypothetical protein SynRCC307_1142 [Synechococcus sp. RCC307] gi|147850551|emb|CAK28045.1| Uncharacterized conserved secreted protein [Synechococcus sp. RCC307] Length = 181 Score = 46.4 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 24/46 (52%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 ++ +G+V V VGR D TP+ ++R+M NP W P + Sbjct: 48 KVKVFHDGQVVATFPVAVGRSDAPTPLGEHTVHRMMKNPVWSSPWT 93 >gi|315654655|ref|ZP_07907561.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] gi|315491119|gb|EFU80738.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] Length = 658 Score = 46.4 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + V+ +R RL + S+ FD +AV FQ R GL SG+VD +T Sbjct: 445 GWNGTKVREVRARLGV----GVPLNASMTFDRATRNAVVRFQRRSGLPASGVVDYATWVR 500 Query: 165 MNVPV 169 + Sbjct: 501 LTGRP 505 >gi|294637825|ref|ZP_06716097.1| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Edwardsiella tarda ATCC 23685] gi|291089024|gb|EFE21585.1| LysM domain /ErfK/YbiS/YcfS/YnhG domain protein [Edwardsiella tarda ATCC 23685] Length = 306 Score = 46.4 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 49/198 (24%) Query: 196 VLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G K + + +G++ R TP+ + + R P W P + + Sbjct: 101 IVINSAEMRLYYYPKGSKTVVVLPIGIGQLGRDTPMNWVTSVQRKKAGPTWT-PTKKMHE 159 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + QYL P F G N M + Sbjct: 160 EY----AANGQYL--------------------------PAVFP----AGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI----- 368 H T F +R + GCVR+R+ WL ++ P +R Sbjct: 186 YVGRLYAV--HGTNAN--FGIGLR-VSHGCVRLRDPD--IKWLFENIPVGTRVQFINEPV 238 Query: 369 EEVVKTRKTTPVKLATEV 386 + V+ + +++ + Sbjct: 239 KATVEPDGSRYIEVHNPL 256 >gi|88812001|ref|ZP_01127254.1| hypothetical protein NB231_06411 [Nitrococcus mobilis Nb-231] gi|88790885|gb|EAR21999.1| hypothetical protein NB231_06411 [Nitrococcus mobilis Nb-231] Length = 1063 Score = 46.4 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 8/73 (10%) Query: 101 PLHLGNSSVSVQRLRERLIISG--------DLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 PL G +V+ +++ L+ G +L P F + VK FQ R+ L Sbjct: 370 PLRRGAKGDAVKLVQQALLQWGCDFSSESVNLLPRYRDDGGFGLEMYLGVKEFQERNRLG 429 Query: 153 PSGMVDSSTLEAM 165 G+V + TL + Sbjct: 430 NDGVVGTETLFVL 442 >gi|315657433|ref|ZP_07910315.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491905|gb|EFU81514.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 658 Score = 46.0 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + V+ +R RL + S+ FD +AV FQ R GL SG+VD +T Sbjct: 445 GWNGTKVREVRARLGV----GVPLNASMTFDRATRNAVVRFQRRSGLPASGVVDYATWVR 500 Query: 165 MNVPV 169 + Sbjct: 501 LTGRP 505 >gi|302532517|ref|ZP_07284859.1| conserved hypothetical protein [Streptomyces sp. C] gi|302441412|gb|EFL13228.1| conserved hypothetical protein [Streptomyces sp. C] Length = 220 Score = 46.0 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 21/50 (42%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 F A SAVK +Q HG+ G +T+ AM V +RI Sbjct: 75 KAGVAADGLFGAGTRSAVKRWQSTHGVGADGTAGPATMSAMGVSRTVRIA 124 Score = 36.7 bits (84), Expect = 7.5, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L G L + + +A++ FQ +GLD G + + A+ Sbjct: 19 LAGLGYL-AADRVDGVDGPATRAALRDFQGDNGLDADGKYGARSELAL 65 >gi|289579365|ref|YP_003477992.1| spore cortex-lytic enzyme [Thermoanaerobacter italicus Ab9] gi|289529078|gb|ADD03430.1| spore cortex-lytic enzyme [Thermoanaerobacter italicus Ab9] Length = 236 Score = 46.0 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 GN+ V +++ RL G + + F AV+ FQ +GL+ +G+VD T A Sbjct: 42 GNTGSDVAKVQARLKDWGYYRGA--VDGFFGVRTWLAVRKFQAYNGLNVTGIVDDDTKVA 99 Query: 165 M 165 + Sbjct: 100 L 100 >gi|239926863|ref|ZP_04683816.1| hypothetical protein SghaA1_01447 [Streptomyces ghanaensis ATCC 14672] gi|291435208|ref|ZP_06574598.1| predicted protein [Streptomyces ghanaensis ATCC 14672] gi|291338103|gb|EFE65059.1| predicted protein [Streptomyces ghanaensis ATCC 14672] Length = 255 Score = 46.0 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 4/75 (5%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG---L 151 P + + L G ++ V L++ LI G G + + +AV FQ + G Sbjct: 178 PTVELENLQYGKTNGDVVDLQKALIEHGG-KIPAGATGYYGDQTRAAVAAFQRKQGWTGP 236 Query: 152 DPSGMVDSSTLEAMN 166 G+ T + +N Sbjct: 237 AADGIPGVETCKRLN 251 >gi|304390171|ref|ZP_07372125.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326653|gb|EFL93897.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 635 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + V+ +R RL + S+ FD +AV FQ R GL SG+VD +T Sbjct: 422 GWNGTKVREVRARLGV----GVPLNASMTFDRATRNAVVRFQRRSGLPASGVVDYATWVR 477 Query: 165 MNVPV 169 + Sbjct: 478 LTGRP 482 >gi|299769283|ref|YP_003731309.1| hypothetical protein AOLE_05195 [Acinetobacter sp. DR1] gi|298699371|gb|ADI89936.1| hypothetical protein AOLE_05195 [Acinetobacter sp. DR1] Length = 412 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 42/251 (16%), Positives = 85/251 (33%), Gaps = 60/251 (23%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 A+ FQ +GL P+G + T +A+ V + ++ + + + Y + Sbjct: 164 KAISSFQQMNGLSPTGDLTKETWDAL-VAKQTKPAFIEYTI------SDADLKGPYAE-S 215 Query: 200 IP-AASLEAVENGKVGLRSTVIVG----------RVDRQTPILHSRINRIMFNPYWVIPR 248 IP +L+A G R T ++G + T +I+ +P Sbjct: 216 IPSDYALQAKMKGLYYTRVTEMLGEKFHIDEAFLKKINPTATFKKAGEKII------VPN 269 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV--FVEEV-------------------- 286 ++ D+ + + +++ + + + + F + Sbjct: 270 --VRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPAGTYKVVGVARN 327 Query: 287 DWNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 W S P NF PG + + I S+ + +H TP P L + Sbjct: 328 PWYSYSPSNFVQGKNLKPLSLPPGPNAPVGNIWIGL-SKKSFGIHGTPNPSLISKTA--- 383 Query: 340 TSGCVRVRNII 350 + GC+R+ N Sbjct: 384 SHGCIRLTNWD 394 >gi|150397906|ref|YP_001328373.1| lytic murein transglycosylase [Sinorhizobium medicae WSM419] gi|150029421|gb|ABR61538.1| lytic murein transglycosylase [Sinorhizobium medicae WSM419] Length = 405 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 9/88 (10%) Query: 78 TEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 IA Y + R WP P L + L+ RL G D + F + Sbjct: 325 LADQIAGYAGMQQR--WPR-PDGSLDISEKF----ELQNRLKELGYYDGEVDGN--FGSG 375 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++A++ FQ ++GL P G L A+ Sbjct: 376 SKAAIEAFQAQNGLKPDGQPTQHLLRAL 403 >gi|98647786|gb|ABF58910.1| matrix metalloprotease 1 [Nicotiana tabacum] Length = 365 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 32/63 (50%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 H G + ++++ G + + FD +ESA+K +Q L+ +G++D+ T+ Sbjct: 51 HAGQKVDGLAKIKKYFYNFGYIPSLSNFTDDFDDALESALKTYQQNFNLNTTGVLDAPTI 110 Query: 163 EAM 165 + + Sbjct: 111 QHL 113 >gi|319760542|ref|YP_004124480.1| Protein erfK/srfK [Candidatus Blochmannia vafer str. BVAF] gi|318039256|gb|ADV33806.1| Protein erfK/srfK [Candidatus Blochmannia vafer str. BVAF] Length = 301 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 64/207 (30%), Gaps = 51/207 (24%) Query: 189 QKMGLRYVLVNIPAASLEAV---ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 + +++NI L +N + + + +G +TP W+ Sbjct: 83 PNTPHKGIIINIAEMRLYYYPNTKNNNIVMVFPISIGTPTHETPS------------QWI 130 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 SI K ++DP ++ NI K E+ + G Sbjct: 131 --TSIKDK------KKDPIWIPTQNIRNEYIKRAEILPLMI--------------LSGPN 168 Query: 306 NAMASTKIEFYSRNNTYMHDTPEP---ILFNNVVRFETSGCVRVRNII-DLDVWL--LKD 359 N + S + + H + L V R GC+R+R L L L Sbjct: 169 NPLGSYALYLGNSYAI--HGSNTNLGIGL--RVTR----GCIRLRTEDIKLLYTLVPLNT 220 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEV 386 + I+ + + +++ T + Sbjct: 221 RVQFINEPIKIAIDSNGMQYLEIHTPL 247 >gi|154247651|ref|YP_001418609.1| peptidoglycan binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154161736|gb|ABS68952.1| Peptidoglycan-binding domain 1 protein [Xanthobacter autotrophicus Py2] Length = 393 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S ++ L++RL G + + +AV FQ GL +G +D +T A Sbjct: 223 GLSKGEIEALQQRLRDLGY-SEVGRVDGKWGPRTIAAVSAFQATSGLPVTGELDKATAAA 281 Query: 165 MNVP 168 + Sbjct: 282 LTTS 285 >gi|153939027|ref|YP_001390990.1| putative peptidoglycan-binding protein [Clostridium botulinum F str. Langeland] gi|152934923|gb|ABS40421.1| putative peptidoglycan-binding protein [Clostridium botulinum F str. Langeland] gi|295319049|gb|ADF99426.1| putative peptidoglycan-binding protein [Clostridium botulinum F str. 230613] Length = 155 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 23/63 (36%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++ LI G S G F AV+ FQ L G V T Sbjct: 85 RQGARGEITKTIQQMLINIGYPVGSYGADGVFGNGTVIAVEAFQRDCNLALDGTVGKDTW 144 Query: 163 EAM 165 +A+ Sbjct: 145 KAL 147 >gi|312135699|ref|YP_004003037.1| erfk/ybis/ycfs/ynhg family protein [Caldicellulosiruptor owensensis OL] gi|311775750|gb|ADQ05237.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor owensensis OL] Length = 223 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R ++ G++ V +++RL G S + + A +E AV L+Q ++ L + + Sbjct: 154 RTIYPGDTGEDVMAVQKRLKELGFYSGS--IDGKYGAALEYAVNLYQKKNKLPVTNKITP 211 Query: 160 STLEAM 165 L M Sbjct: 212 YLLRKM 217 >gi|261820249|ref|YP_003258355.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium wasabiae WPP163] gi|261604262|gb|ACX86748.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium wasabiae WPP163] Length = 357 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 56/205 (27%), Gaps = 49/205 (23%) Query: 189 QKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVI 246 +++N L G K + + +G + + TPI + + R P W Sbjct: 94 PDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGELGKDTPINWTTSVQRKKAGPTWT- 152 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 + +Y G N Sbjct: 153 ----------PTAKMHAEYAAR------------------------GETLKAVFPAGPDN 178 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 M + + H T F +R + GCVR+ D+ +L + P +R Sbjct: 179 PMGLYALYIGNLYAI--HGTNAN--FGIGLR-VSHGCVRL-RADDI-KYLFNNVPVGTRV 231 Query: 367 HI-----EEVVKTRKTTPVKLATEV 386 + V+ + V++ + Sbjct: 232 QFINEPVKATVEPDGSRYVEVHNPL 256 >gi|315505824|ref|YP_004084711.1| peptidoglycan-binding domain 1 protein [Micromonospora sp. L5] gi|315412443|gb|ADU10560.1| Peptidoglycan-binding domain 1 protein [Micromonospora sp. L5] Length = 377 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 7/79 (8%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRE--RLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 L+ W L L S V + L G + + +D +AVK Q Sbjct: 292 LTAPTWETLAP---ELDQKSSGVPVVAAQFMLASKGYAEVTPTGE--YDHATRTAVKDLQ 346 Query: 147 MRHGLDPSGMVDSSTLEAM 165 HGL P+G + ++T A+ Sbjct: 347 RLHGLPPNGKISTTTWCAL 365 >gi|302867773|ref|YP_003836410.1| N-acetylmuramoyl-L-alanine amidase family 2 protein [Micromonospora aurantiaca ATCC 27029] gi|302570632|gb|ADL46834.1| N-acetylmuramoyl-L-alanine amidase family 2 [Micromonospora aurantiaca ATCC 27029] Length = 377 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 7/79 (8%) Query: 89 LSRGGWPELPIRPLHLGNSSVSVQRLRE--RLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 L+ W L L S V + L G + + +D +AVK Q Sbjct: 292 LTAPTWETLAP---ELDQKSSGVPVVAAQFMLASKGYAEVTPTGE--YDHATRTAVKDLQ 346 Query: 147 MRHGLDPSGMVDSSTLEAM 165 HGL P+G + ++T A+ Sbjct: 347 RLHGLPPNGKISTTTWCAL 365 >gi|251790932|ref|YP_003005653.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya zeae Ech1591] gi|247539553|gb|ACT08174.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya zeae Ech1591] Length = 358 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 42/162 (25%), Gaps = 42/162 (25%) Query: 189 QKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVI 246 +++N L G K + + +G++ + TPI + + R P W Sbjct: 94 PDTPREGIVINSAEMRLYYFPKGSKTVVVLPIGIGQLGKDTPINWVTSVQRKKERPTWT- 152 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +Y G N Sbjct: 153 ----------PTAAMHAEYAARGEF------------------------LPKVYPAGPDN 178 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 M + + H T F +R + GCVR+R+ Sbjct: 179 PMGLYALYIGNLYAI--HGTNAN--FGIGLR-VSHGCVRLRD 215 >gi|332712211|ref|ZP_08432139.1| hypothetical protein LYNGBM3L_72340 [Lyngbya majuscula 3L] gi|332349017|gb|EGJ28629.1| hypothetical protein LYNGBM3L_72340 [Lyngbya majuscula 3L] Length = 205 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 53/168 (31%), Gaps = 52/168 (30%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 +++ + +++ + L K+ V +G+ +TP + ++ +++ NP Sbjct: 68 LRQEEDFFNNTPRLVIKLSERRLYVYRGDKLEASYPVAIGQPGWETPTGNFQVTQMVQNP 127 Query: 243 YWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDP 302 W P + G+ V P Sbjct: 128 VWKHPLT----------------------------GEVV-------------------AP 140 Query: 303 GKINAMASTKIEFYSRNNTY--MHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + F+S Y H T + L + GC+R+RN Sbjct: 141 GPENPLGPRWMAFWSDGTNYIGFHGTNDEELVGQ---AVSHGCIRMRN 185 >gi|326332132|ref|ZP_08198416.1| peptidoglycan binding domain-containing protein [Nocardioidaceae bacterium Broad-1] gi|325950103|gb|EGD42159.1| peptidoglycan binding domain-containing protein [Nocardioidaceae bacterium Broad-1] Length = 289 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 25/137 (18%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S V+ L+ RL G + G++ + AV FQ + G+ +G VD +TL+ Sbjct: 85 GDSGDDVRDLQARLKQIGWFN--AGVTGFYGNVTTEAVSGFQAKRGIAVTGFVDQTTLDR 142 Query: 165 M-------------NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG 211 + N P + +L + + R + ++ + L V G Sbjct: 143 LHAMTREPTEAELTNAPPPVPAGKLD----------PRCLTGRVMCIDKSTSMLRWVVGG 192 Query: 212 KVGLRSTVIVGRVDRQT 228 V + V G + T Sbjct: 193 AVQMSVEVRFGSQELPT 209 >gi|242240654|ref|YP_002988835.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech703] gi|242132711|gb|ACS87013.1| ErfK/YbiS/YcfS/YnhG family protein [Dickeya dadantii Ech703] Length = 366 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 56/205 (27%), Gaps = 49/205 (23%) Query: 189 QKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVI 246 +++N L G K + + +G++ + TPI + + R P W Sbjct: 102 PDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGQLGKDTPINWVTSVQRKKERPTWT- 160 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +Y G N Sbjct: 161 ----------PTAAMHAEYAARGEF------------------------LPKIYPAGPDN 186 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 M + + H T F +R + GCVR+R+ +L + P +R Sbjct: 187 PMGLYALYIGNLYAI--HGTNAN--FGIGLR-VSHGCVRLRDKD--IKFLFSNVPVGTRV 239 Query: 367 HI-----EEVVKTRKTTPVKLATEV 386 + V+ + V++ + Sbjct: 240 QFINEPVKATVEPDGSRYVEVHNPL 264 >gi|154686539|ref|YP_001421700.1| hypothetical protein RBAM_021080 [Bacillus amyloliquefaciens FZB42] gi|154352390|gb|ABS74469.1| SleB [Bacillus amyloliquefaciens FZB42] Length = 289 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-SGMVDSS 160 + G + V L+ RL +G + + + AV+ FQ + G+ P G+V + Sbjct: 35 IQRGATGDDVIELQARLQYNGFYNG--KIDGVYGWTTYWAVRNFQEKFGMKPVDGLVGAK 92 Query: 161 TLEAM 165 T + + Sbjct: 93 TKQVL 97 >gi|126642408|ref|YP_001085392.1| hypothetical protein A1S_2371 [Acinetobacter baumannii ATCC 17978] Length = 396 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 85/253 (33%), Gaps = 64/253 (25%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 A+ FQ +GL P+G + T +A+ V + ++ + + + Y + Sbjct: 148 KAIASFQQMNGLSPTGELTKETWDAL-VAKQNKPAFIEYTI------TDADLKGPYAQ-S 199 Query: 200 IP-AASLEAVENGKVGLRSTV--IVG----------RVDRQTPILHSRINRIMFNPYWVI 246 IP +L+A G + V ++G + T +I+ + Sbjct: 200 IPSDYALQAKMKG--LYYTRVSEMLGEKFHIDEAFLKKINPTATFKKVGEKII------V 251 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV--FVEEV------------------ 286 P ++ D+ + + +++ + + + + F + Sbjct: 252 PN--VRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPTGTYKVVGVA 309 Query: 287 --DWNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVR 337 W S P NF PG + + I S+ + +H TP P L + Sbjct: 310 RNPWYSYSPSNFVQGNNLKPLSLPPGPNAPVGNIWIGL-SKKSFGIHGTPNPSLISKTA- 367 Query: 338 FETSGCVRVRNII 350 + GC+R+ N Sbjct: 368 --SHGCIRLTNWD 378 >gi|225574799|ref|ZP_03783409.1| hypothetical protein RUMHYD_02876 [Blautia hydrogenotrophica DSM 10507] gi|225037999|gb|EEG48245.1| hypothetical protein RUMHYD_02876 [Blautia hydrogenotrophica DSM 10507] Length = 619 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V+ ++ LI G G F ++A + FQ +GL+ G +T Sbjct: 390 LCEGDQGEAVKVYQKNLIEIGYNCGKNGADGDFGPATKAATQEFQGDYGLEQDGNAGPAT 449 Query: 162 LEAMNVPVDLR 172 + ++ V + Sbjct: 450 QKKLSAEVKKK 460 >gi|307943783|ref|ZP_07659127.1| N-acetylmuramoyl-L-alanine amidase [Roseibium sp. TrichSKD4] gi|307773413|gb|EFO32630.1| N-acetylmuramoyl-L-alanine amidase [Roseibium sp. TrichSKD4] Length = 258 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G++ V R RE L D L+ FD +E FQ G+ Sbjct: 149 PDGLLRRGDAGPDVHRWREDLDFYRDKIGHPYPVPLTGPFDHTLELVTMWFQKERGIQVD 208 Query: 155 GMVDSSTLEAM 165 G+V LE M Sbjct: 209 GIVGPQVLEEM 219 >gi|167464747|ref|ZP_02329836.1| Sporulation specific N-acetylmuramoyl-L-alanineamidase, spore cortex-lytic enzyme [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382328|ref|ZP_08056235.1| spore cortex-lytic enzyme-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153681|gb|EFX46056.1| spore cortex-lytic enzyme-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 266 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 2/59 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G V L+ R+ G + +VK FQ GL G+V T Sbjct: 39 KYGTKGSDVYELQGRMKFLGFYKGKVDGDFGY--QTLQSVKCFQGEFGLQVDGLVGPKT 95 >gi|83858925|ref|ZP_00952447.1| N-acetylmuramoyl-L-alanine amidase [Oceanicaulis alexandrii HTCC2633] gi|83853748|gb|EAP91600.1| N-acetylmuramoyl-L-alanine amidase [Oceanicaulis alexandrii HTCC2633] Length = 245 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 17/104 (16%) Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQD---------ILSRG--GWP-ELPIR--PLHL 104 + I S PI + + I ++ A QD + G WP P P Sbjct: 113 LSRAILSRHPIAACDVIGHSDLAPDRKQDPGEKFPWKRLAENGVGLWPDPAPAGFAPSAP 172 Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR 148 G+ +V+ LR+ L G + A+D ++S V FQ R Sbjct: 173 GDDGEAVEALRQSLFEIGY---GVARTGAYDDALKSVVLAFQRR 213 >gi|119718549|ref|YP_925514.1| peptidoglycan binding domain-containing protein [Nocardioides sp. JS614] gi|119539210|gb|ABL83827.1| Peptidoglycan-binding domain 1 protein [Nocardioides sp. JS614] Length = 485 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LG++ ++V+RL+ L +G + S ++ F A AV+ +Q + G + SG+ T Sbjct: 418 LKLGSTGLAVRRLQRTLNAAG-VSDSVRMNGMFKAETADAVRAYQQQVGTEVSGVAGYRT 476 Query: 162 LEAM 165 A+ Sbjct: 477 WRAL 480 >gi|298292778|ref|YP_003694717.1| Lysozyme [Starkeya novella DSM 506] gi|296929289|gb|ADH90098.1| Lysozyme [Starkeya novella DSM 506] Length = 508 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 10/81 (12%) Query: 93 GWPELPIRPLHLGNSS------VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 G P+L L +G + ++ RL+ G + F+ ++AV+ FQ Sbjct: 249 GAPKLDRPLLLVGMEDDEENPGKDIAEMQARLVELGYYRG--PVDGIFNPATDAAVREFQ 306 Query: 147 MRH-G-LDPSGMVDSSTLEAM 165 G + G V T + + Sbjct: 307 TEFFGWSEADGRVGPKTWKKL 327 >gi|296330269|ref|ZP_06872750.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676126|ref|YP_003867798.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus subtilis subsp. spizizenii str. W23] gi|296152537|gb|EFG93405.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414370|gb|ADM39489.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus subtilis subsp. spizizenii str. W23] Length = 480 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 23/112 (20%) Query: 82 IAFYQDILSRGGW-------PELPIR--------------PLHLGNSSVSVQRLRERLII 120 + Y+ + G W P + I+ PL + ++ V+ + L+ Sbjct: 351 LTLYKWLTPNGNWIHKKGIEPTIAIKQPDYFSAGPLQLKEPLKVDMNNEDVKH-AQVLLK 409 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 DP + F ++ AV FQ ++ LD +G++D+ T EA+N V+ + Sbjct: 410 GLSFDPGRDDG-YFSKDMKKAVMAFQDQNKLDKTGVIDTRTAEALNQLVEKK 460 >gi|194016849|ref|ZP_03055462.1| YvjB [Bacillus pumilus ATCC 7061] gi|194011455|gb|EDW21024.1| YvjB [Bacillus pumilus ATCC 7061] Length = 470 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 10/100 (10%) Query: 76 AQTEKAIAFYQDILSRGGWPEL-PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 Q + ++ Y + P L P + L ++ V+ ++ LD + + Sbjct: 362 PQVKASLPSYAKL------PYLSPKKTYQLNDNGDEVKAAQKMFQA---LDYKAKANGEY 412 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 D ++ VK FQ + L G++ T + + +++ Sbjct: 413 DQAFQTIVKSFQTDNDLKADGILTGDTTTVLMTKIQNKLK 452 >gi|302872405|ref|YP_003841041.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor obsidiansis OB47] gi|302575264|gb|ADL43055.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor obsidiansis OB47] Length = 223 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R ++ G++ V ++ RL G S + + A +E AV L+Q ++ L + + Sbjct: 154 RTIYPGDTGEDVMAVQRRLKKLGFYSGS--IDGKYGAALEYAVNLYQKKNKLPVTNKITP 211 Query: 160 STLEAM 165 L M Sbjct: 212 YLLRKM 217 >gi|291548077|emb|CBL21185.1| Uncharacterized protein conserved in bacteria [Ruminococcus sp. SR1/5] Length = 411 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 19/111 (17%) Query: 135 DAYVESAVKLFQMRHG-------------LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 D + FQ G +D G V T E + + + V M Sbjct: 214 DHDTVGTERQFQTTSGRTVSVSGSAYGWKIDQDGEVAQLTQE---IQSGAQTTREPVYSM 270 Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG---RVDRQTP 229 R +G Y+ V++ + ++G V S ++ G R+TP Sbjct: 271 RANSYGVNDLGNTYIEVDLTEQYMWYYQDGNVIFESDIVSGLASDPKRKTP 321 >gi|167647642|ref|YP_001685305.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Caulobacter sp. K31] gi|167350072|gb|ABZ72807.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Caulobacter sp. K31] Length = 243 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 9/82 (10%) Query: 89 LSRGGW---PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 G W P P PL G V L+ L G P G +D + + V F Sbjct: 158 AGHGLWVEPPPSPGAPLGQGEEGTGVFALQAGLTRLGYNCPPSGN---YDEWTATVVAAF 214 Query: 146 QMRHGLDP--SGMVDSSTLEAM 165 Q RH L G+ D T + Sbjct: 215 Q-RHWLQTRFDGVADGETRARL 235 >gi|23099945|ref|NP_693411.1| carboxy-terminal processing protease [Oceanobacillus iheyensis HTE831] gi|22778176|dbj|BAC14446.1| carboxy-terminal processing protease [Oceanobacillus iheyensis HTE831] Length = 488 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 8/89 (8%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 P L +S + ++ L G + FD AVK FQ + L+ +G VDS Sbjct: 400 PFSLDETSEEIANMQVMLTGLGY--DTGRTDGYFDEQTAEAVKDFQADNDLEATGEVDSE 457 Query: 161 TLEAMNVPVDLRIR------QLQVNLMRI 183 T + + +IR QL +L + Sbjct: 458 TGGLIETQLVEKIRNGEDDQQLDTSLEEL 486 >gi|16129076|ref|NP_415631.1| L,D-transpeptidase linking Lpp to murein [Escherichia coli str. K-12 substr. MG1655] gi|89107959|ref|AP_001739.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110] gi|3025065|sp|P75954|YCFS_ECOLI RecName: Full=Probable L,D-transpeptidase YcfS; Flags: Precursor gi|1787356|gb|AAC74197.1| L,D-transpeptidase linking Lpp to murein [Escherichia coli str. K-12 substr. MG1655] gi|4062682|dbj|BAA35928.1| conserved hypothetical protein [Escherichia coli str. K12 substr. W3110] Length = 320 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 92 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 150 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + K I + Sbjct: 151 ANPTWTPTANIRAR------------YKAQGIEL-----------------------PAV 175 Query: 300 QDPGKINAMASTKIEFYSRNNTYM-HDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y+ H T F +R +SGC+R+R+ Sbjct: 176 VPAGLDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|291451493|ref|ZP_06590883.1| peptidoglycan-binding domain 1 [Streptomyces albus J1074] gi|291354442|gb|EFE81344.1| peptidoglycan-binding domain 1 [Streptomyces albus J1074] Length = 319 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 10/77 (12%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIIS-GDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 WP + G V + L+ G G F ++AV+ FQ GL+ Sbjct: 184 WPTV-----RSGARGPDVHA-AQHLVSHHGFATDPDG---IFGPATQTAVQEFQTSVGLE 234 Query: 153 PSGMVDSSTLEAMNVPV 169 +G+V++ T + V V Sbjct: 235 ATGVVNAQTWPRLVVTV 251 Score = 44.1 bits (103), Expect = 0.051, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 5/74 (6%) Query: 94 WPE--LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 WP + +R G+ +V+ + + + G G F + A + Q L Sbjct: 244 WPRLVVTVRSGDSGDRGEAVRAAQRQFVKHGHPITVDG---VFGPRTDEAARAVQRAAKL 300 Query: 152 DPSGMVDSSTLEAM 165 G+V T A+ Sbjct: 301 TVDGVVGQQTWRAL 314 >gi|239979629|ref|ZP_04702153.1| putative bifunctional protein, precursor : N-acetylmuramoyl-L-alanine amidase; Muramoylpentapeptide [Streptomyces albus J1074] Length = 318 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 10/77 (12%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIIS-GDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 WP + G V + L+ G G F ++AV+ FQ GL+ Sbjct: 183 WPTV-----RSGARGPDVHA-AQHLVSHHGFATDPDG---IFGPATQTAVQEFQTSVGLE 233 Query: 153 PSGMVDSSTLEAMNVPV 169 +G+V++ T + V V Sbjct: 234 ATGVVNAQTWPRLVVTV 250 Score = 44.1 bits (103), Expect = 0.051, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 5/74 (6%) Query: 94 WPE--LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 WP + +R G+ +V+ + + + G G F + A + Q L Sbjct: 243 WPRLVVTVRSGDSGDRGEAVRAAQRQFVKHGHPITVDG---VFGPRTDEAARAVQRAAKL 299 Query: 152 DPSGMVDSSTLEAM 165 G+V T A+ Sbjct: 300 TVDGVVGQQTWRAL 313 >gi|284052766|ref|ZP_06382976.1| ErfK/YbiS/YcfS/YnhG [Arthrospira platensis str. Paraca] gi|291565859|dbj|BAI88131.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 208 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 43/162 (26%), Gaps = 52/162 (32%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 V++ + + V VG+ +TP ++ + NP W Sbjct: 84 VVLRLGERRVYVYRGESQIASYPVAVGKPGWETPTGTFQVTEKVENPQW----------- 132 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS--TKI 313 ++P EV G +A+ Sbjct: 133 -----ENP-------------WTGEVRP------------------AGPNSALGLRWIGF 156 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 ++ H TP + GCVR+RN + ++ Sbjct: 157 WHDGKDAIGFHGTPTVNSIGQ---AASHGCVRMRNEDIVALF 195 >gi|312127038|ref|YP_003991912.1| erfk/ybis/ycfs/ynhg family protein [Caldicellulosiruptor hydrothermalis 108] gi|311777057|gb|ADQ06543.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor hydrothermalis 108] Length = 223 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R ++ G++ V ++ RL G S + + A +E AV L+Q ++ L + + Sbjct: 154 RTIYPGDTGEDVMAVQRRLKELGFYSGS--IDGKYGAALEYAVNLYQKKNKLPVTNKITP 211 Query: 160 STLEAM 165 L M Sbjct: 212 YLLRKM 217 >gi|266625139|ref|ZP_06118074.1| putative peptidoglycan binding domain protein [Clostridium hathewayi DSM 13479] gi|288862959|gb|EFC95257.1| putative peptidoglycan binding domain protein [Clostridium hathewayi DSM 13479] Length = 857 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ + V+ L++ L I + AF ++AV+ FQ GL G+V + T Sbjct: 3 LKNGDTGIQVKYLQQGLKIM--CCNPGSIDSAFGPGTQAAVEKFQEEWGLTVDGIVGNDT 60 Query: 162 LEAM 165 + Sbjct: 61 WNCL 64 Score = 44.8 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 3/67 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L LG++ + L+ G P G F +A FQ HGL+ G+V Sbjct: 394 SSTLKLGSNGSLTRYLQRLFNELGYQIPIDG---IFSQETHNAALSFQTTHGLEADGIVG 450 Query: 159 SSTLEAM 165 T + Sbjct: 451 GGTWRKL 457 Score = 44.1 bits (103), Expect = 0.046, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 13/86 (15%) Query: 101 PLHLGNSSVSVQRLRERLIIS----GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 PL +G+ V L+ L I G LD F + AVK FQ ++G+ +G+ Sbjct: 134 PLSIGDRGDYVLYLQYGLRILCCSPGALDG------VFGSGTAEAVKKFQAKYGITDNGI 187 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMR 182 D++T + + +L L R Sbjct: 188 ADTTTWNTLKGQITDIQSRL---LER 210 Score = 40.2 bits (93), Expect = 0.66, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ +++ L G + ++ +AV FQ L GMV ++T + Sbjct: 66 AEIKPIQQALKNKGFYTGA--ITGIAKDSTYNAVIRFQSSRDLTADGMVGAATRARL 120 Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL G+ V + L IS G + +SAV ++ R GL GMVD+ Sbjct: 265 PLKTGSRGPRVLYFQYALRIS--CINPNGTDGVYGPGTKSAVDRYKTRKGLTADGMVDTV 322 Query: 161 TLEAM 165 T E M Sbjct: 323 TWEKM 327 Score = 38.3 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 16/101 (15%) Query: 69 IISKETIAQTEKAIAFY----QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 + T +K A Y I W L + + ++ RL+ Sbjct: 164 VFGSGTAEAVKKFQAKYGITDNGIADTTTWNTLKGQ----------ITDIQSRLLERNY- 212 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + + +K +Q + L G V +T E + Sbjct: 213 -SIAIVDGLATSALVETIKKYQEANWLTADGQVGPATYELL 252 >gi|167630819|ref|YP_001681318.1| peptidoglycan-binding domain protein, putative [Heliobacterium modesticaldum Ice1] gi|167593559|gb|ABZ85307.1| peptidoglycan-binding domain protein, putative [Heliobacterium modesticaldum Ice1] Length = 389 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 14/94 (14%) Query: 98 PIRP----LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P P L G++ +V+RL+ L + L ++ +D E+AV+ FQ G++P Sbjct: 169 PAGPTCPELGRGSTGEAVRRLQRLLDAAQYL---VTVTGVYDQATENAVRTFQSEVGINP 225 Query: 154 SGMVDSSTLEAMN-------VPVDLRIRQLQVNL 180 +G + T ++ P RI ++ N+ Sbjct: 226 TGRANLETWLSLGESCGDLPRPPRHRITRVIDNI 259 >gi|91974696|ref|YP_567355.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91681152|gb|ABE37454.1| Peptidoglycan-binding domain 1 [Rhodopseudomonas palustris BisB5] Length = 454 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 10/85 (11%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + + G + ++ L +GD + + + +A+K FQ HG P+ Sbjct: 47 PAETAKSMAQGER----EAIQSDLAWTGDYNGVINGEAS--DRMVAAIKAFQNNHGAKPT 100 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVN 179 G+++ + R+LQ N Sbjct: 101 GVLNPQERAQL----AEAARKLQGN 121 >gi|170738380|ref|YP_001767035.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] gi|168192654|gb|ACA14601.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium sp. 4-46] Length = 337 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 68/219 (31%), Gaps = 60/219 (27%) Query: 151 LDPSGMVDSS----TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLE 206 L+P + + T+ A VP + R K L ++ + ++V A + Sbjct: 166 LNPDKDLGRAGTVVTVAA--VPP--------LATDRPGKGLPEEPKVARIVVGKEALQVR 215 Query: 207 AVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQY 265 A +G + VG ++ P ++ + NP + DP+Y Sbjct: 216 AYGGDGALLAVYPASVGSEEKPAPEGRFKVEGVTLNPTYT---------------YDPKY 260 Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY-SRNNTYMH 324 F PG N + IE H Sbjct: 261 AFK--------------------GVEATRKFTI--KPGPNNPVGLVWIELSAESYGI--H 296 Query: 325 DTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 TPEP + + E+ GC+R+ N DL + + + Sbjct: 297 GTPEP---EKIGKSESHGCIRLTNWDARDLALHVARGAT 332 >gi|290955222|ref|YP_003486404.1| glycosyl transferase [Streptomyces scabiei 87.22] gi|260644748|emb|CBG67833.1| putative glycosyl transferase [Streptomyces scabiei 87.22] Length = 448 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 18/38 (47%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + A E+ V+ FQ GL G++ +T A+N Sbjct: 77 AADGTYGAATEARVRDFQRCAGLGVDGVLGPNTWSALN 114 >gi|75910593|ref|YP_324889.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75704318|gb|ABA23994.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 313 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 20/36 (55%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + A E+A+K FQ ++GL G++ + + + Sbjct: 276 VDGIYGAQTEAAIKRFQRQNGLLADGIIGPMSWQKL 311 Score = 42.9 bits (100), Expect = 0.10, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRE---RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 +P P N S+ RL++ RL I+ + S + +A + A++ FQ GL+ Sbjct: 174 PVPSVPDEEQNIDTSILRLQKSLNRLKITDRSNKSLVENGQLNAETKFAIERFQGIVGLE 233 Query: 153 PSGMVDSSTLEAMNVPVDLRI 173 +G+V+ +T A+N+ + RI Sbjct: 234 KTGIVNEATWNAINLILAKRI 254 >gi|28210881|ref|NP_781825.1| tonB-dependent receptor protein [Clostridium tetani E88] gi|28203320|gb|AAO35762.1| tonB-dependent receptor protein [Clostridium tetani E88] Length = 312 Score = 46.0 bits (108), Expect = 0.012, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 18/108 (16%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAM---NVPVDLRIRQLQVNLMRIKKLLEQKMGLRY-V 196 AV FQ L+ G+V T + + N + + + Y + Sbjct: 130 AVLQFQSSKNLNCDGIVGPETSKYLMNENNNPSDSV--------------PETLKHGYSM 175 Query: 197 LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 ++N L +GKV + V G TP I + NP W Sbjct: 176 VINKDKRILTVYLDGKVYKKYPVAAGASPSYTPEGKFTIVSKLINPTW 223 >gi|325568168|ref|ZP_08144609.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus casseliflavus ATCC 12755] gi|325158369|gb|EGC70520.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus casseliflavus ATCC 12755] Length = 465 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 20/39 (51%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 G Y+ V++ + ++G++ L + +I G+ TP Sbjct: 344 FGNTYIEVDLKNQHMWYYKDGELVLDTKIISGKPATPTP 382 >gi|311897287|dbj|BAJ29695.1| hypothetical protein KSE_38990 [Kitasatospora setae KM-6054] Length = 605 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 3/71 (4%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP +R V + RL G + G + + FQ RHGL Sbjct: 535 WPGRYLRTQTPMLHGDDVLMWQRRLAARGWSISADG---WYGPDSARVCRAFQQRHGLAV 591 Query: 154 SGMVDSSTLEA 164 G+V +T +A Sbjct: 592 DGVVGPATWDA 602 >gi|253575916|ref|ZP_04853250.1| carboxyl-terminal protease [Paenibacillus sp. oral taxon 786 str. D14] gi|251844710|gb|EES72724.1| carboxyl-terminal protease [Paenibacillus sp. oral taxon 786 str. D14] Length = 483 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 8/91 (8%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + ++ + L G +P + FD E A+K FQ L +G++D+ Sbjct: 390 KTYKYDMLGEDIKSAQTMLDGLGY-NPGRKDG-YFDKNTEKALKKFQTDQKLTANGVLDA 447 Query: 160 STLEAMNVPVDLRIR------QLQVNLMRIK 184 T EA+ + +IR QL L ++ Sbjct: 448 KTAEALEASIIQQIRDPKNDMQLNRALEIMR 478 >gi|257877900|ref|ZP_05657553.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus casseliflavus EC20] gi|257812066|gb|EEV40886.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus casseliflavus EC20] Length = 465 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 20/39 (51%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 G Y+ V++ + ++G++ L + +I G+ TP Sbjct: 344 FGNTYIEVDLKNQHMWYYKDGELVLDTKIISGKPATPTP 382 >gi|269140434|ref|YP_003297135.1| ErfK/YbiS/YcfS/YnhG family protein [Edwardsiella tarda EIB202] gi|267986095|gb|ACY85924.1| ErfK/YbiS/YcfS/YnhG family protein [Edwardsiella tarda EIB202] gi|304560228|gb|ADM42892.1| L,D-transpeptidase YbiS [Edwardsiella tarda FL6-60] Length = 306 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 63/198 (31%), Gaps = 49/198 (24%) Query: 196 VLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L G K + + +G++ R TP+ + + R P W P + + Sbjct: 101 IVINSAEMRLYYYPKGSKTVIVLPIGIGQLGRDTPMNWVTSVQRKKAGPTWT-PTKKMHE 159 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + QYL P F G N M + Sbjct: 160 EY----AANGQYL--------------------------PAVFP----AGPDNPMGLYAL 185 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI----- 368 H T F +R + GCVR+R+ WL + P +R Sbjct: 186 YVGRLYAV--HGTNAN--FGIGLR-VSHGCVRLRDPD--IKWLFDNVPVGTRVQFIDEPV 238 Query: 369 EEVVKTRKTTPVKLATEV 386 + V+ + +++ + Sbjct: 239 KATVEPDGSRYIEVHNPL 256 >gi|89097834|ref|ZP_01170721.1| hypothetical protein B14911_22882 [Bacillus sp. NRRL B-14911] gi|89087336|gb|EAR66450.1| hypothetical protein B14911_22882 [Bacillus sp. NRRL B-14911] Length = 496 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P L + +SS V+ +E L G FD + AV Q H L+ +G++ Sbjct: 404 PESELKVSSSSAEVKAAQEMLKALGFEPG--RTDGFFDEKTKQAVIQLQKAHKLEQTGVI 461 Query: 158 -DSSTLEAM 165 +T++ M Sbjct: 462 TGDTTVKMM 470 >gi|318060982|ref|ZP_07979703.1| hypothetical protein SSA3_23760 [Streptomyces sp. SA3_actG] Length = 266 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS-G 155 + L G+S V +L ERL G FD +E A+ +Q+ G G Sbjct: 191 VTQAVLRRGDSGPEVAKLEERLRAVGIYPGRDDG--RFDRGLEYALMTYQVTRGASDEHG 248 Query: 156 MVDSSTLEAM 165 + + T + Sbjct: 249 VYGADTRTKL 258 >gi|295106181|emb|CBL03724.1| Putative peptidoglycan-binding domain-containing protein [Gordonibacter pamelaeae 7-10-1-b] Length = 301 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 12/82 (14%) Query: 94 WPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W L LG+ V+ L++ L G + F AY E A++ Sbjct: 66 WSALVDASYFLGDRTLYLRMPHFHGHDVEELQQALGALGFACGANDG--IFGAYTELALR 123 Query: 144 LFQMRHGLDPSGMVDSSTLEAM 165 FQ+ GL G+ + T A+ Sbjct: 124 KFQLNLGLPSDGIAGAYTYAAI 145 Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P+ + ++ +V+ +++RL G LD + + AF +AV+ F ++ GL Sbjct: 3 PMETIKRHDTGAAVEDVQQRLATIGLLDQAA-IDGAFGEQTAAAVRAFCIQAGLPA 57 >gi|298492145|ref|YP_003722322.1| cell wall hydrolase/autolysin ['Nostoc azollae' 0708] gi|298234063|gb|ADI65199.1| cell wall hydrolase/autolysin ['Nostoc azollae' 0708] Length = 313 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 10/72 (13%) Query: 96 ELPIRPLHLGN--SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 ++ + L GN S ++ L+ R + E+A+K FQ ++GL Sbjct: 248 QILSKRLVQGNQTSGPIIRYLQYR--------VGADPDGIYGLNTEAAIKKFQQQNGLTA 299 Query: 154 SGMVDSSTLEAM 165 G+V + T + + Sbjct: 300 DGIVGAPTWQKL 311 Score = 39.0 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 3/73 (4%) Query: 106 NSSVSVQRLRERLIISG--DLDPSKGLSVAFD-AYVESAVKLFQMRHGLDPSGMVDSSTL 162 N+ S+ RL++ L D + F SAV+ FQ G+ PSGM +S+T Sbjct: 184 NTDTSILRLQKALNQLNITDKNGKPLDEDNFTGPATTSAVEKFQKMAGIIPSGMANSTTW 243 Query: 163 EAMNVPVDLRIRQ 175 A+N + R+ Q Sbjct: 244 NAINQILSKRLVQ 256 >gi|148655791|ref|YP_001275996.1| peptidoglycan binding domain-containing protein [Roseiflexus sp. RS-1] gi|148567901|gb|ABQ90046.1| Peptidoglycan-binding domain 1 protein [Roseiflexus sp. RS-1] Length = 974 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 1/66 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R + G+ V ++ L G P + F A FQ GL P G++ Sbjct: 569 RMISYGSQGQDVADAQQLLNQHGAAPP-LVVDGIFGPKTRQATIEFQKSRGLAPDGIIGP 627 Query: 160 STLEAM 165 T A+ Sbjct: 628 LTWGAL 633 >gi|52080803|ref|YP_079594.1| spore cortex-lytic enzyme [Bacillus licheniformis ATCC 14580] gi|52786173|ref|YP_092002.1| hypothetical protein BLi02431 [Bacillus licheniformis ATCC 14580] gi|52004014|gb|AAU23956.1| spore cortex-lytic enzyme [Bacillus licheniformis ATCC 14580] gi|52348675|gb|AAU41309.1| SleB [Bacillus licheniformis ATCC 14580] Length = 321 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-S 154 + + G + V L+ RL +G + + + AV+ FQ + GL Sbjct: 31 AFSEQVIQRGATGDDVIELQARLQYNGYYNG--RIDGVYGWATYWAVRNFQNQFGLRDTD 88 Query: 155 GMVDSSTLEAM 165 G+V T + Sbjct: 89 GLVGPKTKRLL 99 >gi|154506082|ref|ZP_02042820.1| hypothetical protein RUMGNA_03624 [Ruminococcus gnavus ATCC 29149] gi|153793581|gb|EDN76001.1| hypothetical protein RUMGNA_03624 [Ruminococcus gnavus ATCC 29149] Length = 432 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G+S V++L+E+L +I+G P + AV+ FQ GL + Sbjct: 348 PGYTLENGSSGAKVRQLQEQLNVIAGAYPALPKIQTDGVYGPATAEAVRKFQEIFGLPQT 407 Query: 155 GMVDSSTLE 163 G VD T Sbjct: 408 GTVDYRTWY 416 >gi|149377700|ref|ZP_01895435.1| hypothetical protein MDG893_12425 [Marinobacter algicola DG893] gi|149357985|gb|EDM46472.1| hypothetical protein MDG893_12425 [Marinobacter algicola DG893] Length = 122 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L+ L +G +S D SA+ FQ GL+ SG++D +T +A+ + Sbjct: 15 VALKNALYAAGY--DINNVSPQMDDSTRSALTAFQKDQGLNASGVLDDATKKALGM 68 >gi|332669658|ref|YP_004452666.1| hypothetical protein Celf_1144 [Cellulomonas fimi ATCC 484] gi|332338696|gb|AEE45279.1| hypothetical protein Celf_1144 [Cellulomonas fimi ATCC 484] Length = 547 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 R L G S V +L++ L G +D S +DA +AV+ R G +P Sbjct: 124 TYRSLRAGVSGPDVAQLKQALTSLG-IDVGDAGSATYDARTAAAVRALYQRVGYEP 178 >gi|224367146|ref|YP_002601309.1| putative secretion activating protein [Desulfobacterium autotrophicum HRM2] gi|223689862|gb|ACN13145.1| putative secretion activating protein [Desulfobacterium autotrophicum HRM2] Length = 247 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + R + G+ + V++L+E L I + F E+ +K +Q +GL+P Sbjct: 181 PSVDYRIVKKGSRGLWVRKLQEALKI--------QVDGRFTGDTEATLKAWQQANGLEPD 232 Query: 155 GMVDSSTLEAM 165 G+ +T ++ Sbjct: 233 GIAGRNTYRSL 243 >gi|56964579|ref|YP_176310.1| N-acetylmuramoyl-L-alanine amidase [Bacillus clausii KSM-K16] gi|56910822|dbj|BAD65349.1| N-acetylmuramoyl-L-alanine amidase [Bacillus clausii KSM-K16] Length = 338 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + L+ L ++G AF E AV+ FQ GL G+ +T Sbjct: 277 RRGAKGNLTRVLQALLYLAG--HNPGPFDGAFGDGTEKAVRAFQKAKGLGVDGIAGKNTW 334 Query: 163 EAM 165 +A+ Sbjct: 335 KAL 337 >gi|261212669|ref|ZP_05926953.1| VgrG protein [Vibrio sp. RC341] gi|260837734|gb|EEX64411.1| VgrG protein [Vibrio sp. RC341] Length = 1050 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 30/147 (20%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 I + L ++ S ++ ND + + SD+ S E ++ ++ Y+ Sbjct: 671 IDVASLPTMMPSSANNTANDEPVAEEKTPERILKSDLLKPSDELEKLAKRQVSAYRQ--- 727 Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH- 149 GN S V+ L+E LI G G F ++A++ FQ + Sbjct: 728 --------------GNHSDEVKLLQEALIKLGFDLGKAGADGDFGGKTKTAIEQFQKSYQ 773 Query: 150 -----------GLDPSGMVDSSTLEAM 165 G G+V TL A+ Sbjct: 774 PSHQTHPSYSIG-PVDGIVGKGTLLAL 799 >gi|114706955|ref|ZP_01439854.1| hypothetical protein FP2506_02849 [Fulvimarina pelagi HTCC2506] gi|114537505|gb|EAU40630.1| hypothetical protein FP2506_02849 [Fulvimarina pelagi HTCC2506] Length = 269 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 +++ G P+ + + + + L++ L +G ++ + F +A++ FQ Sbjct: 72 LIATRGMPQPSLNTVEATKADPLLAELQQALAETGHY--TRAIDGRFGPGTRAAIERFQH 129 Query: 148 RHGLDPSGMVDSSTLEA 164 +GL G ++ L Sbjct: 130 ENGLSVDGRPSTALLRQ 146 >gi|323135569|ref|ZP_08070652.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylocystis sp. ATCC 49242] gi|322398660|gb|EFY01179.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylocystis sp. ATCC 49242] Length = 454 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 10/80 (12%) Query: 92 GGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W P L G V +L+ RL G + +D + V FQ Sbjct: 373 GRWLAPAPPDDGPALEPGAGGPDVAQLQRRLADFGY---KMVETGVYDEDTAATVAAFQ- 428 Query: 148 RHGLDP--SGMVDSSTLEAM 165 RH G D+STL+ + Sbjct: 429 RHFRPARVDGRADASTLDIL 448 >gi|307129489|ref|YP_003881505.1| Protein ybiS [Dickeya dadantii 3937] gi|306527018|gb|ADM96948.1| Protein ybiS precursor [Dickeya dadantii 3937] Length = 365 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 42/162 (25%), Gaps = 42/162 (25%) Query: 189 QKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVI 246 +++N L G K + + +G++ + TPI + + R P W Sbjct: 92 PDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGQLGKDTPINWVTSVQRKKERPTWT- 150 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +Y G N Sbjct: 151 ----------PTAAMHAEYAARGEF------------------------LPQVYPAGPDN 176 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 M + + H T F +R + GCVR+R+ Sbjct: 177 PMGLYALYIGNLYAI--HGTNAN--FGIGLR-VSHGCVRLRD 213 >gi|168051500|ref|XP_001778192.1| predicted protein [Physcomitrella patens subsp. patens] gi|162670405|gb|EDQ56974.1| predicted protein [Physcomitrella patens subsp. patens] Length = 529 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPS 154 E+ +R + G V+ L+E L G + + F E+AVK +Q G+ Sbjct: 298 EVMLREMRKGAEGDEVKELQEALQELGFYSGEEDIEYSMFADGTETAVKTWQASIGVRED 357 Query: 155 GMVDSSTLEAM 165 G++ L + Sbjct: 358 GVLSPELLAML 368 >gi|17228635|ref|NP_485183.1| hypothetical protein all1140 [Nostoc sp. PCC 7120] gi|17130486|dbj|BAB73097.1| all1140 [Nostoc sp. PCC 7120] Length = 313 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 20/36 (55%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + A E+A+K FQ ++GL G++ + + + Sbjct: 276 VDGIYGAQTEAAIKRFQRQNGLLADGIIGPMSWQRL 311 Score = 45.6 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRE---RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 +P P N S+ RL++ RL I+G + S + + + A++ FQ GL+ Sbjct: 174 PVPSVPDEEQNIDTSILRLQKSLNRLKITGRSNKSLVENSQLNTETKFAIERFQGIVGLE 233 Query: 153 PSGMVDSSTLEAMNVPVDLRI 173 +G+V+ +T A+N+ + RI Sbjct: 234 KTGIVNEATWNAINLILAKRI 254 >gi|88860965|ref|ZP_01135601.1| hypothetical protein PTD2_10463 [Pseudoalteromonas tunicata D2] gi|88817178|gb|EAR26997.1| hypothetical protein PTD2_10463 [Pseudoalteromonas tunicata D2] Length = 490 Score = 46.0 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 7/66 (10%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM------NVPVDL 171 L G ++ + + +A+K FQ GL +G VD +T +A+ N V Sbjct: 302 LNCLGYINDQEAAG-KYTPNTVAAIKRFQQESGLTVNGKVDEATNKALADTGCMNNSVQN 360 Query: 172 RIRQLQ 177 I + Sbjct: 361 GISMIA 366 >gi|257055214|ref|YP_003133046.1| metalloendopeptidase-like membrane protein [Saccharomonospora viridis DSM 43017] gi|256585086|gb|ACU96219.1| metalloendopeptidase-like membrane protein [Saccharomonospora viridis DSM 43017] Length = 323 Score = 45.6 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 4/72 (5%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP+L I L G V+ L+ L + F SAV+ FQ + L Sbjct: 254 WPKL-IYELRQGARGNHVRALQTALNKR---SAGILVDGDFGPATNSAVRTFQSVNRLVV 309 Query: 154 SGMVDSSTLEAM 165 G+ T A+ Sbjct: 310 DGLAGPYTWRAL 321 Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 23/99 (23%) Query: 92 GGWPELPIRPLHLGNSSVSVQ-RLRER---LIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 GGW L P G + +Q L +R L + G L P +AVK FQ Sbjct: 192 GGWSYLD--PDARGQRARVIQFLLNQRGHNLEVDGWLGPVST----------AAVKSFQR 239 Query: 148 RHGLDPSGMVDSST----LEAMNVPVD---LRIRQLQVN 179 +GL G V ++T + + +R Q +N Sbjct: 240 SNGLVVDGQVGAATWPKLIYELRQGARGNHVRALQTALN 278 >gi|322805741|emb|CBZ03306.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum H04402 065] Length = 281 Score = 45.6 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 2/76 (2%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 SR G+ P G + +++ LI G S G F AVK FQ Sbjct: 203 SRQGFNTFPA--CRQGARGNITKIIQQMLINIGYTVGSFGADGVFGNSTVMAVKSFQRDC 260 Query: 150 GLDPSGMVDSSTLEAM 165 L +V T +A+ Sbjct: 261 NLSADVLVGKETWKAL 276 >gi|261417931|ref|YP_003251613.1| spore cortex-lytic enzyme [Geobacillus sp. Y412MC61] gi|297529599|ref|YP_003670874.1| spore cortex-lytic enzyme [Geobacillus sp. C56-T3] gi|319767257|ref|YP_004132758.1| spore cortex-lytic enzyme [Geobacillus sp. Y412MC52] gi|261374388|gb|ACX77131.1| spore cortex-lytic enzyme [Geobacillus sp. Y412MC61] gi|297252851|gb|ADI26297.1| spore cortex-lytic enzyme [Geobacillus sp. C56-T3] gi|317112123|gb|ADU94615.1| spore cortex-lytic enzyme [Geobacillus sp. Y412MC52] Length = 267 Score = 45.6 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G V L+ RL G + + F A++ FQ +GL G Sbjct: 25 AFSPQVIQRGAVGDDVIELQARLQYLGFYNG--KIDGVFGWRTYWALRNFQYEYGLPVDG 82 Query: 156 MVDSSTLEAM 165 + S T + Sbjct: 83 LAGSETKRKL 92 >gi|126654267|ref|ZP_01726053.1| hypothetical protein BB14905_17570 [Bacillus sp. B14905] gi|126589278|gb|EAZ83437.1| hypothetical protein BB14905_17570 [Bacillus sp. B14905] Length = 504 Score = 45.6 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S SV+ E L + G + FD AV+ Q + L+ +G++ +T Sbjct: 409 MKAGMQSDSVKAAEEMLQVLGYEPGE--IDGLFDDNTAHAVEQLQAANNLEETGVLTGNT 466 Query: 162 LEAM 165 A+ Sbjct: 467 TYAL 470 >gi|56965746|ref|YP_177480.1| hypothetical protein ABC3988 [Bacillus clausii KSM-K16] gi|56911992|dbj|BAD66519.1| conserved hypothetical protein [Bacillus clausii KSM-K16] Length = 432 Score = 45.6 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 19/47 (40%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 P+ G+ + V+ FQ R GL G+ TL + + R Sbjct: 33 PNYGVDGHYGPETTDWVQRFQERKGLQVDGVAGPETLRRLRADIVQR 79 Score = 41.0 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +S V+ L+E L+ + + V+ FQ + L G+ +TL Sbjct: 79 RPDSSGNGVEILQEDLLF--FYIQQSTVDGNYGPGTTQGVRDFQFLNNLVVDGIAGPNTL 136 Query: 163 EAM 165 + M Sbjct: 137 KKM 139 Score = 40.2 bits (93), Expect = 0.68, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G++ V+R++ +L D S + +F +SAV+ FQ G+ T+ Sbjct: 151 GDTGSLVRRIQHQLNEQDRADISIEVDGSFGPATKSAVEAFQEATEQRVDGIAGPVTMNL 210 Query: 165 M 165 + Sbjct: 211 L 211 >gi|303233179|ref|ZP_07319852.1| peptidoglycan binding domain protein [Atopobium vaginae PB189-T1-4] gi|302480764|gb|EFL43851.1| peptidoglycan binding domain protein [Atopobium vaginae PB189-T1-4] Length = 301 Score = 45.6 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 ++P+ G S +V+ ++ RL G +DP + S + + AV F++ L+ S V Sbjct: 1 MKPIQKGASGSAVEDIQNRLSRLGYVIDPQELQSQTYGSSTARAVASFRLAQQLELSEDV 60 Query: 158 DSSTLEAM 165 D T A+ Sbjct: 61 DQETWNAL 68 Score = 45.2 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 21/144 (14%) Query: 40 INESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ--------DILSR 91 I + + N L+R+ ID + S+ + T +A+A ++ + + + Sbjct: 4 IQKGASGSAVEDIQNRLSRLGYVID-PQELQSQTYGSSTARAVASFRLAQQLELSEDVDQ 62 Query: 92 GGWPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 W L LG+ V +L+ L I G + A+ E+A Sbjct: 63 ETWNALVDESYVLGDRTLYLRLPNFHGHDVYQLQTILNILGF--SCGDADSYYGAHTEAA 120 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAM 165 VK FQ G GM T +A+ Sbjct: 121 VKEFQESQGGLADGMAFQDTFDAL 144 >gi|92115924|ref|YP_575653.1| hypothetical protein Nham_0297 [Nitrobacter hamburgensis X14] gi|91798818|gb|ABE61193.1| hypothetical protein Nham_0297 [Nitrobacter hamburgensis X14] Length = 1123 Score = 45.6 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%) Query: 95 PELPIRP-LHLGNS-SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P + P L LG + LR RL + + L D YV SA++L+Q HGL Sbjct: 80 PAVGEGPVLTLGAGFDSRIPGLRTRLSVPSWVGQHDAL--VLDEYVSSALELYQWAHGLP 137 Query: 153 PSGMVDSSTLEAMNVPV 169 +G +D+ T+ ++ V Sbjct: 138 ETGTLDAVTVGTLDRNV 154 >gi|50119764|ref|YP_048931.1| hypothetical protein ECA0821 [Pectobacterium atrosepticum SCRI1043] gi|49610290|emb|CAG73734.1| putative exported protein [Pectobacterium atrosepticum SCRI1043] Length = 365 Score = 45.6 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 55/205 (26%), Gaps = 49/205 (23%) Query: 189 QKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVI 246 +++N L G K + + +G + + TPI + + R P W Sbjct: 94 PDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGELGKDTPINWTTSVQRKKAGPTWT- 152 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 + +Y G N Sbjct: 153 ----------PTAKMHAEYAAR------------------------GETLQKVFPAGPDN 178 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 M + + H T F +R + GCVR+ D+ +L P +R Sbjct: 179 PMGLYALYIGNLYAI--HGTNAN--FGIGLR-VSHGCVRL-RADDI-KYLFNSVPVGTRV 231 Query: 367 HI-----EEVVKTRKTTPVKLATEV 386 + V+ + V++ + Sbjct: 232 QFINEPVKATVEPDGSRYVEVHNPL 256 >gi|220932691|ref|YP_002509599.1| Peptidoglycan-binding domain 1 protein [Halothermothrix orenii H 168] gi|219994001|gb|ACL70604.1| Peptidoglycan-binding domain 1 protein [Halothermothrix orenii H 168] Length = 225 Score = 45.6 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V++++ L G + AV+ +Q GL G+V +T E + Sbjct: 2 MRGDDVEQVQTFLNQQGY---DVTVDGILGPETAGAVRDYQEDKGLSVDGVVGPNTREEI 58 >gi|320180157|gb|EFW55096.1| General secretion pathway protein A [Shigella boydii ATCC 9905] Length = 266 Score = 45.6 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 4/74 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L+ L + L S S + + +K FQ H L Sbjct: 169 WKMSPEGESTITRDSSEEEILWLKTMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 226 Query: 152 DPSGMVDSSTLEAM 165 G+V STL + Sbjct: 227 KTDGVVGFSTLVHL 240 >gi|296102869|ref|YP_003613015.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057328|gb|ADF62066.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 321 Score = 45.6 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 53/164 (32%), Gaps = 42/164 (25%) Query: 189 QKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIMFNPYWV 245 +++N+ L GK + +G++ D TP + + ++ NP W Sbjct: 97 PDAPREGIVINLAELRLYYYPPGKNEVSVYPIGIGQLGGDTLTPTMITTVSDKRANPTWT 156 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 P + I+ K + + + V G Sbjct: 157 -PTANIR---------------------ARYKAQGIDLPAVV-------------PAGPD 181 Query: 306 NAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 N M I + Y +H T F +R +SGC+R+R+ Sbjct: 182 NPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 222 >gi|289976573|gb|ADD21635.1| matrix metalloprotease 1 [Nicotiana benthamiana] Length = 364 Score = 45.6 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 H G + ++++ G + + FD +ESA+K +Q L+ +G++D+ T+ Sbjct: 50 HAGQKVDGLAKIKKYFYNFGYISSLSNFTDDFDDALESALKTYQQNFNLNTTGVLDAPTI 109 Query: 163 EAM 165 E + Sbjct: 110 EHL 112 >gi|196249379|ref|ZP_03148077.1| carboxyl-terminal protease [Geobacillus sp. G11MC16] gi|196211136|gb|EDY05897.1| carboxyl-terminal protease [Geobacillus sp. G11MC16] Length = 481 Score = 45.6 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +P + + ++ L G DP + F E+AVK FQ + L +G +D Sbjct: 392 KPFTYDMNDEQIANAQKMLKGLGF-DPGRTDG-YFSKETETAVKAFQKANKLPATGRIDE 449 Query: 160 STLEAMNVPVDLRIR 174 +T + + IR Sbjct: 450 TTANVLQTKIMEAIR 464 >gi|138896677|ref|YP_001127130.1| putative protease [Geobacillus thermodenitrificans NG80-2] gi|134268190|gb|ABO68385.1| Putative protease [Geobacillus thermodenitrificans NG80-2] Length = 472 Score = 45.6 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +P + + ++ L G DP + F E+AVK FQ + L +G +D Sbjct: 383 KPFTYDMNDEQIANAQKMLKGLGF-DPGRTDG-YFSKETETAVKAFQKANKLPATGRIDE 440 Query: 160 STLEAMNVPVDLRIR 174 +T + + IR Sbjct: 441 TTANVLQTKIMEAIR 455 >gi|89071145|ref|ZP_01158340.1| hypothetical protein OG2516_12809 [Oceanicola granulosus HTCC2516] gi|89043302|gb|EAR49526.1| hypothetical protein OG2516_12809 [Oceanicola granulosus HTCC2516] Length = 327 Score = 45.6 bits (107), Expect = 0.014, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 55/176 (31%), Gaps = 46/176 (26%) Query: 189 QKMGLRYVLVNIPAASLEAVEN-GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 Q+ + + ++ P + L A + G V + V VG +P + + P Sbjct: 188 QEGEVARIEIDKPNSRLVAYDGSGAVLVNYPVAVGSDQTPSPSGTHEVVAVAVEPT---- 243 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 YL D N D PG Sbjct: 244 ---------------YSYLPDTNFQQGDNDE------------------PLTLPPGPNGP 270 Query: 308 MASTKIEFYSRNNTY-MHDTPEP-ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 + I+ TY +H TP+P LFN ++ GCVR+ N L++ L Sbjct: 271 VGLVWIDLSKP--TYGLHGTPDPASLFN----AQSHGCVRMTNWDALELAHLTGQG 320 >gi|262190080|ref|ZP_06048374.1| VgrG protein [Vibrio cholerae CT 5369-93] gi|262034045|gb|EEY52491.1| VgrG protein [Vibrio cholerae CT 5369-93] Length = 432 Score = 45.6 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 30/147 (20%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 I + L ++ S ++ ND + + SD+ S E ++ + Y+ Sbjct: 82 IDVASLPTMMPSSANNTANDEPVAEEKTSERILKSDLLKPSDELEKLAKRQASAYRQ--- 138 Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH- 149 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 139 --------------GNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQ 184 Query: 150 -----------GLDPSGMVDSSTLEAM 165 G G+V TL A+ Sbjct: 185 PSHQSHPSYSIG-PVDGIVGKGTLLAL 210 >gi|157146185|ref|YP_001453504.1| hypothetical protein CKO_01941 [Citrobacter koseri ATCC BAA-895] gi|157083390|gb|ABV13068.1| hypothetical protein CKO_01941 [Citrobacter koseri ATCC BAA-895] Length = 322 Score = 45.6 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 43/170 (25%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L GK + +G++ D TP + + ++ Sbjct: 93 LQTLLP-DAPREGIVINLAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 151 Query: 240 FNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFR 299 NP W +I + +D + P Sbjct: 152 ANPTWTPTANI-----------------RARYK----------AQGIDLPAVVP------ 178 Query: 300 QDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N M I + Y +H T F +R +SGC+R+R+ Sbjct: 179 --AGPDNPMGHHAIRLAAYGGVYLLHGTNAD--FGIGMR-VSSGCIRLRD 223 >gi|109897279|ref|YP_660534.1| peptidoglycan binding domain-containing protein [Pseudoalteromonas atlantica T6c] gi|109699560|gb|ABG39480.1| Peptidoglycan-binding domain 1 [Pseudoalteromonas atlantica T6c] Length = 199 Score = 45.6 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 ++RLI L+ S FD A K FQ GL +G+ D +TL MN Sbjct: 145 KQRLIKMDYLN--ALGSDDFDQETLDAFKHFQRDRGLAQTGVPDQNTL--MN 192 >gi|255558368|ref|XP_002520211.1| Metalloendoproteinase 1 precursor, putative [Ricinus communis] gi|223540703|gb|EEF42266.1| Metalloendoproteinase 1 precursor, putative [Ricinus communis] Length = 364 Score = 45.6 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPS-KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G+ + +L+ G + + + FD +ESA+K +Q L+ +G +D T Sbjct: 54 RAGDKLEGLSKLKNYFHYFGYIPNTLSNFTDDFDDALESAIKTYQQNFNLNVTGELDEQT 113 Query: 162 LEAMNVPVDLRIRQL 176 L+ + P + Sbjct: 114 LDQLVRPRCGNADII 128 >gi|160878697|ref|YP_001557665.1| peptidoglycan binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160427363|gb|ABX40926.1| Peptidoglycan-binding domain 1 protein [Clostridium phytofermentans ISDg] Length = 464 Score = 45.6 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P L +G+S SV +L+E+L D+ P+ F +AVK FQ + L Sbjct: 378 SFPGYNLTIGSSGSSVMQLQEQLNAIADVYYPIPNVSADGIFGPATAAAVKAFQKQFNLP 437 Query: 153 PSGMVDSSTLE 163 SG+VD T Sbjct: 438 QSGIVDLPTWY 448 >gi|56420766|ref|YP_148084.1| sporulation specific N-acetylmuramoyl-L-alanine amidase [Geobacillus kaustophilus HTA426] gi|56380608|dbj|BAD76516.1| sporulation specific N-acetylmuramoyl-L-alanine amidase (spore cortex-lytic enzyme) [Geobacillus kaustophilus HTA426] Length = 264 Score = 45.6 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G V L+ RL G + + F A++ FQ +GL G Sbjct: 25 AFSPQVIQRGAVGDDVIELQARLQYLGFYNG--KIDGVFGWRTYWALRNFQYEYGLPVDG 82 Query: 156 MVDSSTLEAM 165 + S T + Sbjct: 83 LAGSETKRKL 92 >gi|86138723|ref|ZP_01057296.1| hypothetical protein MED193_22786 [Roseobacter sp. MED193] gi|85824783|gb|EAQ44985.1| hypothetical protein MED193_22786 [Roseobacter sp. MED193] Length = 222 Score = 45.6 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 15/32 (46%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 +A++ FQ GL G+V T A+ P Sbjct: 20 NAIRRFQQSVGLLADGIVGPMTYAALFGPPAT 51 >gi|226314511|ref|YP_002774407.1| hypothetical protein BBR47_49260 [Brevibacillus brevis NBRC 100599] gi|226097461|dbj|BAH45903.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 237 Score = 45.6 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P R L G+ VQ ++ RL +G F + +A+K FQ L Sbjct: 163 GDPSHDPRDLAEGDVGGDVQLIQSRLKSAGYYHG--ICDGKFRSSTTAALKKFQRDRKLK 220 Query: 153 PSGMVDSSTLEAM 165 P+G+V S + + Sbjct: 221 PNGVVSSKIYQEL 233 >gi|225571095|ref|ZP_03780112.1| hypothetical protein CLOHYLEM_07195 [Clostridium hylemonae DSM 15053] gi|225160176|gb|EEG72795.1| hypothetical protein CLOHYLEM_07195 [Clostridium hylemonae DSM 15053] Length = 262 Score = 45.6 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ERL G + ++A+K +Q HGL G+V T + Sbjct: 207 ALLQERLNALGY--NCGVVDGINGTKTQAAIKAYQRAHGLVADGIVGVKTWSNL 258 >gi|330861295|emb|CBX71539.1| hypothetical protein YEW_CU11380 [Yersinia enterocolitica W22703] Length = 315 Score = 45.6 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 25/121 (20%) Query: 7 INKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSD 66 + LY Y + +++ + + E Y + + + Sbjct: 152 GSVWLYSNVPYKMAMPPATILNR--WQQAVHEGTTAPYLASLAPQ--------------- 194 Query: 67 IPIISKETIAQTEKAIAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLD 125 + +A+ + + R WP++ P L G S + LRE L +G L Sbjct: 195 -----HPQYEKMHQALK--EMLADRRPWPQMANGPSLRPGQLSDDIPALREILDRTGMLH 247 Query: 126 P 126 P Sbjct: 248 P 248 >gi|308174085|ref|YP_003920790.1| spore cortex-lytic enzyme [Bacillus amyloliquefaciens DSM 7] gi|307606949|emb|CBI43320.1| spore cortex-lytic enzyme [Bacillus amyloliquefaciens DSM 7] gi|328552788|gb|AEB23280.1| spore cortex-lytic enzyme [Bacillus amyloliquefaciens TA208] gi|328912414|gb|AEB64010.1| spore cortex-lytic enzyme [Bacillus amyloliquefaciens LL3] Length = 289 Score = 45.6 bits (107), Expect = 0.015, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-SGMVDSS 160 + G + V L+ RL +G + + + AV+ FQ + G+ G+V + Sbjct: 34 IQRGATGDDVIELQARLQYNGFYNG--KIDGVYGWTTYWAVRNFQEKFGMKAVDGLVGAK 91 Query: 161 TLEAM 165 T + + Sbjct: 92 TKQVL 96 >gi|290962481|ref|YP_003493663.1| serine-threonine protein kinase [Streptomyces scabiei 87.22] gi|260652007|emb|CBG75139.1| putative serine-threonine protein kinase [Streptomyces scabiei 87.22] Length = 621 Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-SGMVDSST 161 G+S V++++ L G G+S FDA ++AV+ FQ L G V Sbjct: 554 RPGDSGDRVRQVQCMLSKRGYSLGPGGVSGEFDAGTKAAVQSFQRARQLVVKDGTVRPRV 613 Query: 162 LEAM 165 A+ Sbjct: 614 WRAL 617 >gi|227502232|ref|ZP_03932281.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium accolens ATCC 49725] gi|227077056|gb|EEI15019.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium accolens ATCC 49725] Length = 382 Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 12/68 (17%) Query: 110 SVQRLRERLIISGDLDPSKG------------LSVAFDAYVESAVKLFQMRHGLDPSGMV 157 V R L G L G FDA + +K FQ G+ P+G + Sbjct: 2 RVAEARATLARLGLLSDFTGELSAWKKQKYSETDKTFDADLAEVLKAFQQSRGILPTGEI 61 Query: 158 DSSTLEAM 165 D TL + Sbjct: 62 DDLTLREL 69 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 5/80 (6%) Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 G + F +A+ +Q GL G+ +T+ A+++ N+ Sbjct: 104 LGFY--QDRVDGHFGRTTHAALTEYQHNCGLQEDGVCGPATIRALSLLGRRITGGSAHNI 161 Query: 181 ---MRIKKLLEQKMGLRYVL 197 R++ + G R V+ Sbjct: 162 VERERVRNAGPKLAGKRVVI 181 >gi|209525406|ref|ZP_03273946.1| ErfK/YbiS/YcfS/YnhG family protein [Arthrospira maxima CS-328] gi|209494086|gb|EDZ94401.1| ErfK/YbiS/YcfS/YnhG family protein [Arthrospira maxima CS-328] Length = 208 Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 39/154 (25%), Gaps = 52/154 (33%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 + V VG+ +TP ++ + NP W Q+P Sbjct: 92 RVYVYRGESQIASYPVAVGKPGWETPTGTFQVTEKVENPQW----------------QNP 135 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS--TKIEFYSRNNT 321 EV G +A+ ++ Sbjct: 136 -------------WTGEVRP------------------AGPNSALGLRWIGFWHDGKDAI 164 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 H TP + GCVR+RN + ++ Sbjct: 165 GFHGTPTVNSIGQ---AASHGCVRMRNEDIVALF 195 >gi|160879346|ref|YP_001558314.1| peptidoglycan binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160428012|gb|ABX41575.1| Peptidoglycan-binding domain 1 protein [Clostridium phytofermentans ISDg] Length = 667 Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 7/72 (9%) Query: 98 PIRPLHLGN----SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P R L + S + V+ L++RL G + + E+ +K FQ + L Sbjct: 588 PFRELKYKDGTVMSGIDVKNLQQRLNRLGY---KVTVDGTYGKNTETVIKKFQKDNKLKE 644 Query: 154 SGMVDSSTLEAM 165 +G+V+ ST E + Sbjct: 645 TGVVNYSTWEKL 656 >gi|262278335|ref|ZP_06056120.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262258686|gb|EEY77419.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 416 Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 84/251 (33%), Gaps = 60/251 (23%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 A+ FQ +GL +G + T +A+ V + ++ + + + Y + Sbjct: 168 KAISSFQQMNGLSATGELTKETWDAL-VAKQTKPAFIEYTI------SDADLKGPYAQ-S 219 Query: 200 IP-AASLEAVENGKVGLRSTVIVG----------RVDRQTPILHSRINRIMFNPYWVIPR 248 IP +L+A G R + ++G + T +I+ +P Sbjct: 220 IPSDYALQAKMKGLYYTRISEMLGEKFHIDEAFLKKINPTATFKKAGEKII------VPN 273 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEV--FVEEV-------------------- 286 ++ D+ + + +++ + + + + F + Sbjct: 274 --VRNDLPEDIHLIIAHKGAKQLYLFNSRNQMIASFPATIGSTDTPSPAGTYKVVGVARN 331 Query: 287 DWNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFE 339 W S P NF PG + + I S+ + +H TP P L + Sbjct: 332 PWYSYSPSNFVQGKNLKPLSLPPGPNAPVGNIWIGL-SKKSFGIHGTPNPSLISKTA--- 387 Query: 340 TSGCVRVRNII 350 + GC+R+ N Sbjct: 388 SHGCIRLTNWD 398 >gi|160876018|ref|YP_001555334.1| peptidoglycan-binding domain-containing protein [Shewanella baltica OS195] gi|160861540|gb|ABX50074.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS195] Length = 273 Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G++ V+ L++RL +G S + F + A++ FQ + L +G Sbjct: 2 TLKKGSNGSQVRDLQQRLNAAG---ASLTVDGWFGDATQKAIEQFQDKQDLPRTGYAGVR 58 Query: 161 TLEAM 165 TL + Sbjct: 59 TLALL 63 >gi|227326330|ref|ZP_03830354.1| hypothetical protein PcarcW_03064 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 355 Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 56/205 (27%), Gaps = 49/205 (23%) Query: 189 QKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVI 246 +++N L G K + + +G + + TPI + + R P W Sbjct: 92 PDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGELGKDTPINWTTSVQRKKAGPTWT- 150 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 + +Y G N Sbjct: 151 ----------PTAKMHAEYAAR------------------------GETLQKVFPAGPDN 176 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRY 366 M + + H T F +R + GCVR+ D+ +L + P +R Sbjct: 177 PMGLYALYIGNLYAI--HGTNAN--FGIGLR-VSHGCVRL-RADDI-KYLFNNVPVGTRV 229 Query: 367 HI-----EEVVKTRKTTPVKLATEV 386 + V+ + V++ + Sbjct: 230 QFINEPVKATVEPDGSRYVEVHNPL 254 >gi|227495720|ref|ZP_03926031.1| phage integrase [Actinomyces urogenitalis DSM 15434] gi|226834740|gb|EEH67123.1| phage integrase [Actinomyces urogenitalis DSM 15434] Length = 448 Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 21/40 (52%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + FD AV +Q+RHGL+ SG VD T EA+ Sbjct: 308 ATARRGPVFDRETVDAVASWQLRHGLEASGRVDRPTWEAL 347 >gi|323143884|ref|ZP_08078548.1| protein ErfK/srfK [Succinatimonas hippei YIT 12066] gi|322416356|gb|EFY07026.1| protein ErfK/srfK [Succinatimonas hippei YIT 12066] Length = 301 Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 55/197 (27%), Gaps = 49/197 (24%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQKD 254 +++N L + V + +G++ TP+ + + R P W Sbjct: 94 IIINSAEMRLYYYHDN-VVDILPIGIGQLGTDTPLNWVTAVQRKKAGPTWT--------- 143 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + +Y G N M + Sbjct: 144 --PTAKMHAEYRARGEY------------------------LPAVWPAGPDNPMGLYALY 177 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH-----IE 369 H T F +R + GCVR+RN + +L + P +R I+ Sbjct: 178 IGRLYAI--HGTNAD--FGIGLR-VSHGCVRLRN--EDIEYLFNNVPVGTRVQFINRPIK 230 Query: 370 EVVKTRKTTPVKLATEV 386 ++ +++ + Sbjct: 231 YAIEDNGNIYIEVHQPL 247 >gi|302544645|ref|ZP_07296987.1| lipoprotein [Streptomyces hygroscopicus ATCC 53653] gi|302462263|gb|EFL25356.1| lipoprotein [Streptomyces himastatinicus ATCC 53653] Length = 211 Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 47/134 (35%), Gaps = 20/134 (14%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G S V+ L+ RL G D + + F ++V +Q GL +G VDS T + Sbjct: 9 GTSGERVRELQARLRRLGHFDRNP--TGYFGTVTRASVTSYQRARGLSATGSVDSRTWTS 66 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQK----------MGLRYVLVNIPAASLEAVENGKVG 214 + R R + + R + ++ + +L + NG+V Sbjct: 67 L-RSRTARPT-------RDELYPPTTNPLAKPDSRCLTGRVLCISKSSRTLAWMINGRVV 118 Query: 215 LRSTVIVGRVDRQT 228 V G T Sbjct: 119 SAMDVRFGSQYTPT 132 >gi|158422481|ref|YP_001523773.1| putative chitinase [Azorhizobium caulinodans ORS 571] gi|158329370|dbj|BAF86855.1| putative chitinase [Azorhizobium caulinodans ORS 571] Length = 301 Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 4/69 (5%) Query: 94 WPELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 W ++ L + + L+E L G G +A++ FQ R+GL Sbjct: 219 WSQIGTGALWRAAGADDATADLQESLNALGYSLTVDGRQG---PATTAAIRDFQSRNGLK 275 Query: 153 PSGMVDSST 161 G+ T Sbjct: 276 ADGIAGPVT 284 >gi|284033902|ref|YP_003383833.1| peptidoglycan-binding domain 1 protein [Kribbella flavida DSM 17836] gi|283813195|gb|ADB35034.1| Peptidoglycan-binding domain 1 protein [Kribbella flavida DSM 17836] Length = 206 Score = 45.6 bits (107), Expect = 0.016, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 2/64 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ +++ L+ L + + + + V Q RH L G+ T Sbjct: 126 RFGDPDTAIRTLQRNLNYC--YGSKLTIDGVYGSNTRAIVMQVQKRHKLAADGIYGPQTR 183 Query: 163 EAMN 166 MN Sbjct: 184 STMN 187 >gi|291563072|emb|CBL41888.1| Putative peptidoglycan-binding domain-containing protein [butyrate-producing bacterium SS3/4] Length = 412 Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSKGLSV--AFDAYVESAVKLFQMRHGLDPS 154 P L +G + V++L+E+L IS + +S + AV+ FQ GL + Sbjct: 328 PGYDLKIGATGDKVRQLQEQLDAISSVYNAIPDISPDGIYGPATAEAVRKFQSIFGLPQT 387 Query: 155 GMVDSSTLE 163 G+VD +T Sbjct: 388 GVVDFATWY 396 >gi|328957708|ref|YP_004375094.1| N-acetylmuramoyl-L-alanine amidase [Carnobacterium sp. 17-4] gi|328674032|gb|AEB30078.1| N-acetylmuramoyl-L-alanine amidase [Carnobacterium sp. 17-4] Length = 367 Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 6/74 (8%) Query: 92 GGWPELPIRP---LHLGNSSVSVQRLRERLIISGDLDPSKGLSV-AFDAYVESAVKLFQM 147 G W L G S V ++ LI G+ G + AVK FQ+ Sbjct: 290 GYWGPESASKMRILKTGFSGSDVYVVQAFLI--GNYHLKLGTPDKQYGPKTTEAVKQFQL 347 Query: 148 RHGLDPSGMVDSST 161 GL G+ T Sbjct: 348 NSGLLADGITGPKT 361 >gi|291484719|dbj|BAI85794.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. natto BEST195] Length = 305 Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDSS 160 + G + V L+ RL +G + + + AV+ FQ + GL G+V + Sbjct: 35 IQRGATGDDVVELQARLQYNGYYNG--KIDGVYGWGTYWAVRNFQDQFGLKEVDGLVGAK 92 Query: 161 TLEAM 165 T + + Sbjct: 93 TKQTL 97 >gi|291299343|ref|YP_003510621.1| peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] gi|290568563|gb|ADD41528.1| Peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] Length = 379 Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+S V R++ L + L F + AV +Q G++ +G+V++ T Sbjct: 314 LKEGSSGADVSRVQRALTAA--LGAEVSQDGQFGPKTKQAVTDYQTAAGVEANGVVNAET 371 Query: 162 LEAM 165 +A+ Sbjct: 372 WKAL 375 Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V+ + L+ S +FD +A K FQ + GL+ SG VD T Sbjct: 243 LATGSKGSEVRA-AQCLLADAGFPTGDKPSGSFDDKTVTATKEFQTKVGLEASGKVDKHT 301 Query: 162 LEAM 165 A+ Sbjct: 302 WTAL 305 >gi|229543982|ref|ZP_04433041.1| spore cortex-lytic enzyme [Bacillus coagulans 36D1] gi|229325121|gb|EEN90797.1| spore cortex-lytic enzyme [Bacillus coagulans 36D1] Length = 264 Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G V L+ RL G + + Y A++ FQ +G+ G+ Sbjct: 36 IQKGAVGDDVIELQARLQYIGYYKGTIDGVFGYSTY--WALRNFQKAYGMPVDGLAGPGV 93 Query: 162 LEAM 165 + Sbjct: 94 KAKL 97 >gi|16079350|ref|NP_390174.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. subtilis str. 168] gi|221310211|ref|ZP_03592058.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. subtilis str. 168] gi|221314534|ref|ZP_03596339.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319456|ref|ZP_03600750.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. subtilis str. JH642] gi|221323732|ref|ZP_03605026.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. subtilis str. SMY] gi|1730903|sp|P50739|SLEB_BACSU RecName: Full=Spore cortex-lytic enzyme; Short=SCLE; Flags: Precursor gi|1146210|gb|AAC83957.1| spore cortex lytic enzyme [Bacillus subtilis subsp. subtilis str. 168] gi|1688023|dbj|BAA11473.1| spore-cortex-lytic enzyme prepeptide [Bacillus subtilis] gi|2634711|emb|CAB14209.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. subtilis str. 168] Length = 305 Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDSS 160 + G + V L+ RL +G + + + AV+ FQ + GL G+V + Sbjct: 35 IQRGATGDDVVELQARLQYNGYYNG--KIDGVYGWGTYWAVRNFQDQFGLKEVDGLVGAK 92 Query: 161 TLEAM 165 T + + Sbjct: 93 TKQTL 97 >gi|116626900|ref|YP_829056.1| ErfK/YbiS/YcfS/YnhG family protein [Candidatus Solibacter usitatus Ellin6076] gi|116230062|gb|ABJ88771.1| ErfK/YbiS/YcfS/YnhG family protein [Candidatus Solibacter usitatus Ellin6076] Length = 182 Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 48/167 (28%), Gaps = 65/167 (38%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + R ++V+IP L +E+ +V VG +P I + +P W Sbjct: 30 QNTRPARRIVVSIPDRKLAVMEDDRVLRVFETAVGAPKSPSPTGTYTIINSIADPTWY-- 87 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 KGK V PGK N Sbjct: 88 ----------------------------TKGKIV-------------------PPGKCNP 100 Query: 308 MA------STKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + S K H T P ++ R + GC+R+RN Sbjct: 101 LGTRWLGLSVK-----GYGI--HGTNVPS---SIGRNASHGCIRMRN 137 >gi|321311765|ref|YP_004204052.1| spore cortex-lytic enzyme [Bacillus subtilis BSn5] gi|320018039|gb|ADV93025.1| spore cortex-lytic enzyme [Bacillus subtilis BSn5] Length = 305 Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDSS 160 + G + V L+ RL +G + + + AV+ FQ + GL G+V + Sbjct: 35 IQRGATGDDVVELQARLQYNGYYNG--KIDGVYGWGTYWAVRNFQDQFGLKEVDGLVGAK 92 Query: 161 TLEAM 165 T + + Sbjct: 93 TKQTL 97 >gi|225427844|ref|XP_002276155.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 295 Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 5/87 (5%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESA 141 ++ + S G + L G+ + +Q +++ L G L S+ S FD +ES+ Sbjct: 34 FRHLESFGSFKHLEGS--KKGDKTEGIQMVKKYLEHYGYLSSTHYSQMDSDDFDDTLESS 91 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVP 168 +K FQ + L P+G +D+ T M+ P Sbjct: 92 LKAFQTFYHLKPTGSLDAPTATLMSKP 118 >gi|304313391|ref|YP_003812989.1| hypothetical protein HDN1F_37840 [gamma proteobacterium HdN1] gi|301799124|emb|CBL47367.1| conserved hypothetical protein [gamma proteobacterium HdN1] Length = 368 Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 59/187 (31%), Gaps = 48/187 (25%) Query: 196 VLVNIPAASLEAV---ENGK--VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 +++NI L GK + V + R + TP+ +++ + +P W +P+SI Sbjct: 101 IVLNISQRRLFYFPAPAKGKAAKVVTFPVSIARENWATPLGTTKVTGLFKDPAWFVPKSI 160 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 ++ A + P Y PG N M Sbjct: 161 QEEHKAAGEVEFPTYF----------------------------------PPGPNNPMGM 186 Query: 311 TKIE--FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI 368 I+ F ++H T P +R + GC+ + D + I Sbjct: 187 LAIQLGFP---GIFIHGTNRPW--GVGMRT-SHGCLHL-YPEDAANIFPQLKAGVPVRVI 239 Query: 369 EEVVKTR 375 +E V Sbjct: 240 DEPVVAG 246 >gi|229522795|ref|ZP_04412209.1| VgrG protein [Vibrio cholerae TM 11079-80] gi|229340012|gb|EEO05020.1| VgrG protein [Vibrio cholerae TM 11079-80] Length = 1050 Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 30/147 (20%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 I + L +I S ++ ND + + SD+ S E ++ + Y+ Sbjct: 671 IDVASLPTMIPSSANNTANDEPVAEEKTPERILKSDLLKPSDELEKLAKRQASAYRQ--- 727 Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH- 149 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 728 --------------GNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQ 773 Query: 150 -----------GLDPSGMVDSSTLEAM 165 G G+V TL A+ Sbjct: 774 PSHQTHPSYSIG-AVDGIVGKGTLLAL 799 >gi|147776035|emb|CAN65266.1| hypothetical protein VITISV_040133 [Vitis vinifera] Length = 295 Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 5/87 (5%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESA 141 ++ + S G + L G+ + +Q +++ L G L S+ S FD +ES+ Sbjct: 34 FRHLESFGSFKHLEGS--KKGDKTEGIQMVKKYLEHYGYLSSTHYSQMDSDDFDDTLESS 91 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVP 168 +K FQ + L P+G +D+ T M+ P Sbjct: 92 LKAFQTFYHLKPTGSLDAPTATLMSKP 118 >gi|114564416|ref|YP_751930.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella frigidimarina NCIMB 400] gi|114335709|gb|ABI73091.1| ErfK/YbiS/YcfS/YnhG family protein [Shewanella frigidimarina NCIMB 400] Length = 305 Score = 45.6 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 48/155 (30%), Gaps = 42/155 (27%) Query: 196 VLVNIPAASLEAVENGKVGLRS-TVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 V++N L GK + + +G++ + TP + + R NP W P I+K Sbjct: 99 VVINSAEMRLYYYPKGKNTVEVLPIGIGQIGKDTPENWVTTVQRKRANPTWT-PTVNIRK 157 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 A P W G N M + Sbjct: 158 SYAAKGITLPAV----------------------W------------PAGADNPMGLFAL 183 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + H T F +R +SGCVR+R+ Sbjct: 184 YVGNLYAV--HGTNAT--FGIGLR-VSSGCVRLRD 213 >gi|306834789|ref|ZP_07467853.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium accolens ATCC 49726] gi|304569317|gb|EFM44818.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium accolens ATCC 49726] Length = 382 Score = 45.2 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 12/68 (17%) Query: 110 SVQRLRERLIISGDLDPSKG------------LSVAFDAYVESAVKLFQMRHGLDPSGMV 157 V R L G L G FDA + +K FQ G+ P+G + Sbjct: 2 RVAEARATLARLGLLSDFTGELSAWKKQKYSETDKTFDADLADVLKAFQQSRGILPTGEI 61 Query: 158 DSSTLEAM 165 D TL + Sbjct: 62 DDLTLREL 69 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 5/80 (6%) Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 G + F +A+ +Q GL G+ +T+ A+++ N+ Sbjct: 104 LGFY--QDRVDGHFGRTTHAALTEYQHNCGLQEDGVCGPATIRALSLLGRRITGGSAHNI 161 Query: 181 ---MRIKKLLEQKMGLRYVL 197 R++ + G R V+ Sbjct: 162 VERERVRNAGPKLAGKRVVI 181 >gi|302553721|ref|ZP_07306063.1| lipoprotein [Streptomyces viridochromogenes DSM 40736] gi|302471339|gb|EFL34432.1| lipoprotein [Streptomyces viridochromogenes DSM 40736] Length = 283 Score = 45.2 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 21/142 (14%) Query: 98 PIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 P R L G++ V+ L+ RL L G + +D E AV FQ + GL +G Sbjct: 73 PARVLWSRGDTGRDVRELQARLRQVAWL--FDGPTGTYDDRTERAVSGFQGKRGLPRTGR 130 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLL----EQKMGL------RYVLVNIPAASLE 206 + T+ R+R + R L R + ++ + +L Sbjct: 131 --TDTVTW------QRLRGMTREPGRWDLYLMGGQPADPPDARCMTGRVLCIDKTSRTLR 182 Query: 207 AVENGKVGLRSTVIVGRVDRQT 228 + +G+ V G T Sbjct: 183 WMIDGRTVSTVAVRFGSQYTPT 204 >gi|158321448|ref|YP_001513955.1| ErfK/YbiS/YcfS/YnhG family protein [Alkaliphilus oremlandii OhILAs] gi|158141647|gb|ABW19959.1| ErfK/YbiS/YcfS/YnhG family protein [Alkaliphilus oremlandii OhILAs] Length = 254 Score = 45.2 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ ++ G+ V ++ RL G D + L + ++E A+ FQ H + + ++ Sbjct: 183 LQTIYPGDFGADVLEIQNRLRAYGYYD-VEHLDGKYGPHMEQALYQFQKDHNIPKNPHIE 241 Query: 159 SSTLEAMNV 167 T +A+ V Sbjct: 242 YDTYKALGV 250 >gi|17231042|ref|NP_487590.1| hypothetical protein all3550 [Nostoc sp. PCC 7120] gi|17132683|dbj|BAB75249.1| all3550 [Nostoc sp. PCC 7120] Length = 208 Score = 45.2 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 3/79 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDSS 160 L G+ VQ L+ +L G + + AV FQ G+ D + Sbjct: 52 LKPGSQGPDVQTLQTQLKQLGYYSGIADG--KYGDSTKKAVAKFQQAKVFSRVDGVADLA 109 Query: 161 TLEAMNVPVDLRIRQLQVN 179 T + + +L V Sbjct: 110 TKRILQTALIDNQNKLAVA 128 >gi|86143221|ref|ZP_01061623.1| putative phage-related protein [Leeuwenhoekiella blandensis MED217] gi|85830126|gb|EAQ48586.1| putative phage-related protein [Leeuwenhoekiella blandensis MED217] Length = 273 Score = 45.2 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ L + V L E L G +S F +AVK FQ ++ L G+V Sbjct: 1 MKTLRYRSRGQEVYFLEELLQKLGY---EVYVSTYFGLDTNNAVKDFQQKNNLVVDGIVG 57 Query: 159 SSTLEAM 165 T + Sbjct: 58 LKTWSKL 64 >gi|296332967|ref|ZP_06875424.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674929|ref|YP_003866601.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. spizizenii str. W23] gi|296149818|gb|EFG90710.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413173|gb|ADM38292.1| spore cortex-lytic enzyme [Bacillus subtilis subsp. spizizenii str. W23] Length = 303 Score = 45.2 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDSS 160 + G + V L+ RL +G + + + AV+ FQ + GL G+V + Sbjct: 35 IQRGATGDDVVELQARLQYNGYYNG--KIDGVYGWGTYWAVRNFQDQFGLKEVDGLVGAK 92 Query: 161 TLEAM 165 T + + Sbjct: 93 TKQTL 97 >gi|307153544|ref|YP_003888928.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 7822] gi|306983772|gb|ADN15653.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 7822] Length = 216 Score = 45.2 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 40/156 (25%), Gaps = 56/156 (35%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPR--SIIQKDMMALLRQ 261 + + + V VG+ +TP ++ +++ NP W P SII Sbjct: 100 RVYIYQGDQQVAMYPVAVGKKGWETPTGDFQVLQMVPNPIWQNPWNGSII---------- 149 Query: 262 DPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS--TKIEFYSRN 319 G N + +N Sbjct: 150 ---------------------------------------PAGPRNPLGERWIGFWTDGKN 170 Query: 320 NTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 H T L + GCVR+RN ++ Sbjct: 171 YIGFHGTQAEHLMGQ---AVSHGCVRMRNSDIKAIF 203 >gi|330465557|ref|YP_004403300.1| peptidoglycan-binding domain 1 protein [Verrucosispora maris AB-18-032] gi|328808528|gb|AEB42700.1| peptidoglycan-binding domain 1 protein [Verrucosispora maris AB-18-032] Length = 359 Score = 45.2 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 13/117 (11%) Query: 48 VNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWP------ELPI-R 100 V+ R + +T A + A Y + G P ++P R Sbjct: 65 VDGELGYGPNRTAASRLAGTITALPDTSATVRRGKALY----AVDGDPVTLLYGKVPAYR 120 Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G V++L L G + + AV+ +Q G+ +G V Sbjct: 121 TLQPGVEGPDVEQLERNLKALGY--TGFTVDDEYTWATADAVRAWQDDLGVPETGRV 175 >gi|318079927|ref|ZP_07987259.1| hypothetical protein SSA3_25371 [Streptomyces sp. SA3_actF] Length = 93 Score = 45.2 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS-G 155 + L G+S V +L ERL G FD +E A+ +Q+ G G Sbjct: 18 VTQAVLRRGDSGPEVAKLEERLRAVGIYPGRDDG--RFDRGLEYALMTYQVTRGASDEHG 75 Query: 156 MVDSSTLEAM 165 + + T + Sbjct: 76 VYGADTRTKL 85 >gi|328880515|emb|CCA53754.1| hypothetical protein SVEN_0467 [Streptomyces venezuelae ATCC 10712] Length = 363 Score = 45.2 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 8/137 (5%) Query: 28 EKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD 87 P A+V+ + V+ D R ++ + A Y+ Sbjct: 45 APPATATVVRTDLV--RAKTVDGTLDFAQRRPVKSAVVGTVTVAATEGRTVTRGQALYE- 101 Query: 88 ILSRG---GWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 + + + +P+ R + G+ V +L L G + +D E+AVK Sbjct: 102 LDDKPVTLLYGPVPVFREMKTGDRGSDVLQLERNLRDLGH-GAGLYVDTRYDKDTETAVK 160 Query: 144 LFQMRHGLDPSGMVDSS 160 +Q +P+G V Sbjct: 161 RWQKSLNREPTGRVGKG 177 >gi|297804958|ref|XP_002870363.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297316199|gb|EFH46622.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 394 Score = 45.2 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L +G+ VQ L+E L+ G + + +F + SAVK +Q G+ G++ + Sbjct: 184 TLKVGSEGDDVQALQEALLKLGFYSGEEDMEFSSFSSGTASAVKTWQASLGVREDGIMTA 243 Query: 160 STLEAM 165 L+ + Sbjct: 244 ELLQRL 249 >gi|320104360|ref|YP_004179951.1| hypothetical protein Isop_2836 [Isosphaera pallida ATCC 43644] gi|319751642|gb|ADV63402.1| protein of unknown function DUF1028 [Isosphaera pallida ATCC 43644] Length = 391 Score = 45.2 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 23/92 (25%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSV-----------AFDAYVESAVKLFQMRHGLD--- 152 V +L+ L GD P + + +D AV F+ R GL Sbjct: 266 QGPDVVQLKRALHELGDYRPDEQEADFNRGLRSSEGGVYDRETAQAVDRFRARVGLPHPG 325 Query: 153 -----PSGMVDSSTLEAMNVPVDLRIRQLQVN 179 G+VD + A+ I QL+ Sbjct: 326 LGLGYAPGVVDREMIRAL----QDAITQLRRA 353 >gi|269796632|ref|YP_003316087.1| peptidoglycan binding protein [Sanguibacter keddieii DSM 10542] gi|269098817|gb|ACZ23253.1| putative peptidoglycan binding protein [Sanguibacter keddieii DSM 10542] Length = 384 Score = 45.2 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 R + G S V+ LR+ L +G + + G ++ + A+ +Q +G G+ Sbjct: 130 REIGPGTSGADVEGLRDYLAAAGS-ETTLGRGASYSPSLRRAITAYQRANGFPADGV 185 >gi|29135080|ref|NP_803710.1| endolysin [Pseudomonas phage phiKZ] gi|18996609|gb|AAL83045.1|AF399011_144 PHIKZ144 [Pseudomonas phage phiKZ] Length = 260 Score = 45.2 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ L G+ V +L+ L + G D K + + VK FQ + LD G+V Sbjct: 1 MKVLRKGDRGDEVCQLQTLLNLCGY-DVGKPDGIFGNNTFNQVVK-FQKDNCLDSDGIVG 58 Query: 159 SSTLEAM 165 +T + Sbjct: 59 KNTWAEL 65 >gi|319782836|ref|YP_004142312.1| N-acetylmuramoyl-L-alanine amidase family 2 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168724|gb|ADV12262.1| N-acetylmuramoyl-L-alanine amidase family 2 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 252 Score = 45.2 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDS 159 L G++ ++ L+ L + G +S FD E+ V+ FQ G+ D Sbjct: 181 TLTTGDTGGDIEALQSMLALYGY---GVEISGVFDRQTEAVVEAFQRHFRPRKVDGVADG 237 Query: 160 STLEAM 165 STL + Sbjct: 238 STLRTL 243 >gi|298244048|ref|ZP_06967855.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] gi|297557102|gb|EFH90966.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] Length = 368 Score = 45.2 bits (106), Expect = 0.019, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 4/82 (4%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP+L I+ G+ +V L+ +L +G + F + E AV+ +Q + L Sbjct: 100 WPKL-IKATSSGSQGYTVMALQHQLNQAGF---HLNVDGVFGSDTEKAVRAYQQQVSLSV 155 Query: 154 SGMVDSSTLEAMNVPVDLRIRQ 175 G+ T + + R ++ Sbjct: 156 DGVAGVRTWQYLLAATAAREKK 177 >gi|319645240|ref|ZP_07999473.1| SleB protein [Bacillus sp. BT1B_CT2] gi|317393049|gb|EFV73843.1| SleB protein [Bacillus sp. BT1B_CT2] Length = 305 Score = 45.2 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-S 154 + + G + V L+ RL +G + + + AV+ FQ + GL Sbjct: 15 AFSEQVIQRGATGDDVIELQARLQYNGYYNG--RIDGVYGWATYWAVRNFQNQFGLRDTD 72 Query: 155 GMVDSSTLEAM 165 G+V T + Sbjct: 73 GLVGPKTKRLL 83 >gi|302772727|ref|XP_002969781.1| hypothetical protein SELMODRAFT_13930 [Selaginella moellendorffii] gi|302823297|ref|XP_002993302.1| hypothetical protein SELMODRAFT_3042 [Selaginella moellendorffii] gi|300138875|gb|EFJ05627.1| hypothetical protein SELMODRAFT_3042 [Selaginella moellendorffii] gi|300162292|gb|EFJ28905.1| hypothetical protein SELMODRAFT_13930 [Selaginella moellendorffii] Length = 301 Score = 45.2 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + +L+ L G + + FD E+A+KL+Q GL+ +G +D T+ M Sbjct: 22 LPQLKRYLQEFGY-TSWEEFTPDFDNQTEAAIKLYQSNFGLNATGTLDERTITQM 75 >gi|326202028|ref|ZP_08191898.1| Peptidoglycan-binding domain 1 protein [Clostridium papyrosolvens DSM 2782] gi|325987823|gb|EGD48649.1| Peptidoglycan-binding domain 1 protein [Clostridium papyrosolvens DSM 2782] Length = 330 Score = 45.2 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 5/78 (6%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDL-----DPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P +G+ V+ ++ L+ +G G+ F ++AV +Q+ +GL Sbjct: 90 PNGCYGIGSRGEKVEDIQTALVNNGYSVGNSGPNYDGIDKTFGVDTKAAVVRYQIDNGLS 149 Query: 153 PSGMVDSSTLEAMNVPVD 170 G+V +T +++ V ++ Sbjct: 150 YDGIVGKNTAKSLGVNLE 167 >gi|257784149|ref|YP_003179366.1| Peptidoglycan-binding domain 1 protein [Atopobium parvulum DSM 20469] gi|257472656|gb|ACV50775.1| Peptidoglycan-binding domain 1 protein [Atopobium parvulum DSM 20469] Length = 309 Score = 45.2 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 P+ G+ +V+ ++ERL+ G ++ + + FD AV F++ H L VD+ Sbjct: 3 PITPGSIGAAVEDIQERLVKLGYTIEDDERQNHVFDKSTARAVARFRLDHDLSLGEEVDA 62 Query: 160 STLEAM 165 ST M Sbjct: 63 STWAIM 68 Score = 43.3 bits (101), Expect = 0.083, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 20/108 (18%) Query: 76 AQTEKAIAFYQ--------DILSRGGWPELPIRPLHLGNS----------SVSVQRLRER 117 T +A+A ++ + + W + LG+ V++L+ER Sbjct: 39 KSTARAVARFRLDHDLSLGEEVDASTWAIMVDEGYELGDRTLYLRLPNFHGNDVRQLQER 98 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L I G + + + E+AVKLFQ G GM TL+A+ Sbjct: 99 LNILGF--SCGKVDGHYGVHTEAAVKLFQESVGELADGMAFQDTLDAI 144 >gi|119386314|ref|YP_917369.1| peptidoglycan binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119376909|gb|ABL71673.1| Peptidoglycan-binding domain 1 protein [Paracoccus denitrificans PD1222] Length = 264 Score = 45.2 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 14/61 (22%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + + +R L+++G V+ FQ GL G+ TL A Sbjct: 173 GMADRQARYVRAALVLAGYGATE--------------VRRFQKEAGLTADGIAGPKTLAA 218 Query: 165 M 165 + Sbjct: 219 L 219 >gi|302534571|ref|ZP_07286913.1| membrane protein [Streptomyces sp. C] gi|302443466|gb|EFL15282.1| membrane protein [Streptomyces sp. C] Length = 471 Score = 45.2 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 4/71 (5%) Query: 99 IRPLHLGNSSVSVQRLRERLIISG---DLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPS 154 +R G S +V L RL G GL D A + Q G Sbjct: 399 LRVFRPGQSHPAVLALGRRLAQKGFGKYYTSGPGLRWSEADRRNVEAFQRAQGWRGGSAD 458 Query: 155 GMVDSSTLEAM 165 G T + Sbjct: 459 GYPGPETWRRL 469 >gi|168187152|ref|ZP_02621787.1| putative N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum C str. Eklund] gi|169294969|gb|EDS77102.1| putative N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum C str. Eklund] Length = 304 Score = 45.2 bits (106), Expect = 0.020, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 2/75 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L +G+ V++L+ L G + F ++AV FQ + L G+V Sbjct: 168 SSGLLKIGSKEDKVKQLQVNLNKLGYTCGNADG--IFGQGTKNAVISFQRNNELSADGIV 225 Query: 158 DSSTLEAMNVPVDLR 172 ST + ++ R Sbjct: 226 GESTWNKILSNLEDR 240 >gi|293400844|ref|ZP_06644989.1| LysM domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305870|gb|EFE47114.1| LysM domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 226 Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 7/83 (8%) Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 Y G+P L G+ V V L++ L G ++ L AF + +A+ Sbjct: 135 KRYGTPACSAGYPT-----LRQGSRGVYVLILQDALNALGY--STQTLDGAFGSNTRAAL 187 Query: 143 KLFQMRHGLDPSGMVDSSTLEAM 165 +Q +GL G+ T + Sbjct: 188 IAYQRNNGLTADGISGCGTWTRL 210 >gi|327485350|gb|AEA79756.1| VgrG-3 protein [Vibrio cholerae LMA3894-4] Length = 839 Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 30/147 (20%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 I + L ++ S ++ ND + + SD+ S E ++ + Y+ Sbjct: 671 IDVASLPTMMPSSANNTANDEPVAEEKTPERILKSDLLKPSDELEKLAKRQASAYRQ--- 727 Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH- 149 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 728 --------------GNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQ 773 Query: 150 -----------GLDPSGMVDSSTLEAM 165 G G+V TL A+ Sbjct: 774 PSHQTHPSYSIG-PVDGIVGKGTLLAL 799 >gi|255588477|ref|XP_002534615.1| Metalloendoproteinase 1 precursor, putative [Ricinus communis] gi|223524902|gb|EEF27766.1| Metalloendoproteinase 1 precursor, putative [Ricinus communis] Length = 325 Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ + L++ L G L + + FD ESA+ +Q GL +G +D+ T+ Sbjct: 28 GSEVTGMSELKKYLNRFGYLPGNVNFTDIFDLEFESAILAYQNNLGLPVTGKLDADTIS 86 >gi|119386487|ref|YP_917542.1| peptidoglycan binding domain-containing protein [Paracoccus denitrificans PD1222] gi|119377082|gb|ABL71846.1| Peptidoglycan-binding domain 1 protein [Paracoccus denitrificans PD1222] Length = 264 Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 12/24 (50%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAM 165 V+ FQ GL G+ TL A+ Sbjct: 196 VRRFQKEAGLTADGIAGPKTLAAL 219 >gi|310825721|ref|YP_003958078.1| putative muramoyl-pentapeptide carboxypeptidase [Eubacterium limosum KIST612] gi|308737455|gb|ADO35115.1| putative muramoyl-pentapeptide carboxypeptidase [Eubacterium limosum KIST612] Length = 173 Score = 45.2 bits (106), Expect = 0.021, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFD-AYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S+ ++ L G + G D ++AVK FQ + G+ G+ T + Sbjct: 2 SILEVQRILSHLGY---NPGEHDGLDGPNTQAAVKAFQRKAGIKADGIAGPVTRGHL 55 >gi|297840561|ref|XP_002888162.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297334003|gb|EFH64421.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 351 Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Query: 89 LSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 ++ W + H+G + + +L++ G + + + FD ++SA+ +Q Sbjct: 26 ATQNAWETFSKLAGCHIGENINGLSKLKQYFRRFGYITGTNNCTDDFDDVLQSAINTYQK 85 Query: 148 RHGLDPSGMVDSSTLEAMNVP 168 L +G +DSSTL + P Sbjct: 86 NFNLKVTGKLDSSTLRQIVKP 106 >gi|284028974|ref|YP_003378905.1| ErfK/YbiS/YcfS/YnhG family protein [Kribbella flavida DSM 17836] gi|283808267|gb|ADB30106.1| ErfK/YbiS/YcfS/YnhG family protein [Kribbella flavida DSM 17836] Length = 281 Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 10/130 (7%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G +S V+++ RLI LD + L +F SAVK FQ G+ G VD +T + Sbjct: 76 GATSPDVRKVEARLIQLKLLDK-RWLDASFGTSTRSAVKKFQTSKGIPALGYVDQNTWDQ 134 Query: 165 M-NVPVDLRIRQL-----QVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRST 218 + + +L VN + L + + ++ + L V +G V ++ Sbjct: 135 LKAATREPTQTELFPPPPVVN---GRPLDPRCATGVSLCIDKTSRKLRYVVDGAVKMQFD 191 Query: 219 VIVGRVDRQT 228 V G T Sbjct: 192 VRFGAQKTAT 201 >gi|154246422|ref|YP_001417380.1| peptidoglycan binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154160507|gb|ABS67723.1| Peptidoglycan-binding domain 1 protein [Xanthobacter autotrophicus Py2] Length = 497 Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 11/84 (13%) Query: 95 PELPIRPL--HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH--- 149 P P + L G+ VSV RL++RL G + + FD + AV+LFQ R Sbjct: 233 PRFPGKYLMEKTGDK-VSVTRLQKRLADMGASPGAP--TGVFDTPTKYAVQLFQARSVDL 289 Query: 150 -G--LDPSGMVDSSTLEAMNVPVD 170 G L+ G+V T A+ P+ Sbjct: 290 DGAPLEIDGIVGPMTWGALFGPLS 313 >gi|164519578|pdb|3BKH|A Chain A, Crystal Structure Of The Bacteriophage Phikz Lytic Transglycosylase, Gp144 gi|164519579|pdb|3BKV|A Chain A, X-Ray Structure Of The Bacteriophage Phikz Lytic Transglycosylase, Gp144, In Complex With Chitotetraose, (Nag)4 Length = 268 Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L G+ V +L+ L + G D K + + VK FQ + LD G+V Sbjct: 10 KVLRKGDRGDEVCQLQTLLNLCGY-DVGKPDGIFGNNTFNQVVK-FQKDNCLDSDGIVGK 67 Query: 160 STLEAM 165 +T + Sbjct: 68 NTWAEL 73 >gi|84498128|ref|ZP_00996925.1| hypothetical protein JNB_18613 [Janibacter sp. HTCC2649] gi|84381628|gb|EAP97511.1| hypothetical protein JNB_18613 [Janibacter sp. HTCC2649] Length = 611 Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 16/125 (12%) Query: 49 NDRFDNFLARVDMGIDSDIPI-ISKETIAQTEKAIAFYQDILSRGGWPELPI-------R 100 + +F S + ++K+ T + + I SR G P Sbjct: 255 DGQFGPGTEAAVASFQSRNGVAVTKQLDNATWTKLVQLKLIPSRTGGTTAPSPLSAYVNT 314 Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + G+ +V L++ L ++ D +F E+ VK +Q G+ P+G+V SS Sbjct: 315 VIQRGSKGPAVIALQKALGLTAD--------GSFGPGTETKVKAYQSSKGISPTGVVASS 366 Query: 161 TLEAM 165 T +A+ Sbjct: 367 TWKAL 371 Score = 44.1 bits (103), Expect = 0.043, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 8/64 (12%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G+ +V L++ L I+ D +F E+ VK +Q G+ P+G+V S+T Sbjct: 397 IQRGSKGPAVIALQKALRITAD--------GSFGPGTETKVKAYQTSKGISPTGVVASAT 448 Query: 162 LEAM 165 A+ Sbjct: 449 WAAL 452 Score = 39.8 bits (92), Expect = 0.75, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 7/64 (10%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V+ L+ L + AF AVK Q R GL SG+V+ T Sbjct: 481 LSAGSKGTAVKVLQAGLGGL-------AVDGAFGQATVGAVKALQTRWGLPASGVVNLKT 533 Query: 162 LEAM 165 + Sbjct: 534 WNRL 537 >gi|225452584|ref|XP_002275582.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296087730|emb|CBI34986.3| unnamed protein product [Vitis vinifera] Length = 303 Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 7/73 (9%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVA-------FDAYVESAVKLFQMRHGLDPSG 155 G+ + ++R L G L + + + FD +ESA++ FQ + L P+G Sbjct: 43 KKGDKVEGIHKVRNYLQRFGYLSSTHSKTESQVDGDDHFDDDLESAIQAFQTYYHLKPTG 102 Query: 156 MVDSSTLEAMNVP 168 ++D+ T M+ P Sbjct: 103 ILDAPTAALMSRP 115 >gi|154245840|ref|YP_001416798.1| N-acetylmuramoyl-L-alanine amidase [Xanthobacter autotrophicus Py2] gi|154159925|gb|ABS67141.1| N-acetylmuramoyl-L-alanine amidase family 2 [Xanthobacter autotrophicus Py2] Length = 265 Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 4/63 (6%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTL 162 LG++ V L+ L + G L+ A+DA V FQ G+ D++T+ Sbjct: 191 LGDAGEPVAALKAMLALYGY---GIELTDAYDAETADVVAAFQRHFRPAKVDGVADAATI 247 Query: 163 EAM 165 + Sbjct: 248 LTL 250 >gi|229824435|ref|ZP_04450504.1| hypothetical protein GCWU000282_01758 [Catonella morbi ATCC 51271] gi|229786036|gb|EEP22150.1| hypothetical protein GCWU000282_01758 [Catonella morbi ATCC 51271] Length = 459 Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 E +G YV V+I + ++GK L + V+ GR T Sbjct: 329 ENDIGPSYVEVDIAHQMMFIYKDGKKVLETPVVTGRPGTTT 369 >gi|146300718|ref|YP_001195309.1| peptidoglycan binding domain-containing protein [Flavobacterium johnsoniae UW101] gi|146155136|gb|ABQ05990.1| Peptidoglycan-binding domain 1 protein [Flavobacterium johnsoniae UW101] Length = 274 Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +R + LG S V L E L+ G S +S +F + +V+ FQ+++ L G+V Sbjct: 1 MRTIKLGVKSNEVYYLNELLVKLGY---SIVVSDSFGTATDKSVRDFQLKNNLVVDGVVG 57 Query: 159 SSTLEAM 165 T + Sbjct: 58 LKTWTVL 64 >gi|328884149|emb|CCA57388.1| hypothetical protein SVEN_4102 [Streptomyces venezuelae ATCC 10712] Length = 122 Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 17/37 (45%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F + A++ FQ GL P G+V +T A+ Sbjct: 68 AEDRIFGPDTDGAIRAFQQWKGLRPDGIVGPATGTAL 104 >gi|326491397|dbj|BAJ94176.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 373 Score = 45.2 bits (106), Expect = 0.022, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 8/69 (11%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLS--------VAFDAYVESAVKLFQMRHGLDPSGM 156 G + L+ L G + G AFD ++E+AVK +Q R L +G Sbjct: 57 GTRVTGLGDLKRYLATFGYMPKPAGAGAEHGGGPMDAFDEHLEAAVKRYQSRLSLPVTGR 116 Query: 157 VDSSTLEAM 165 +D TL+ M Sbjct: 117 LDVVTLDQM 125 >gi|312871420|ref|ZP_07731515.1| peptidase, S41 family [Lactobacillus iners LEAF 3008A-a] gi|312872352|ref|ZP_07732422.1| peptidase, S41 family [Lactobacillus iners LEAF 2062A-h1] gi|311092175|gb|EFQ50549.1| peptidase, S41 family [Lactobacillus iners LEAF 2062A-h1] gi|311093073|gb|EFQ51422.1| peptidase, S41 family [Lactobacillus iners LEAF 3008A-a] Length = 460 Score = 45.2 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + + L++ L+ G L S L+ +D ++VK+F+ + L +G+V+ Sbjct: 376 LKYNMMGLDIAILQKYLMALGYL--SNNLTGVYDNATLNSVKMFEKDNNLKVTGIVNKDI 433 Query: 162 LEAM 165 A+ Sbjct: 434 RYAL 437 >gi|21223243|ref|NP_629022.1| lipoprotein [Streptomyces coelicolor A3(2)] gi|11544753|emb|CAC17656.1| putative lipoprotein [Streptomyces coelicolor A3(2)] Length = 281 Score = 45.2 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 42/147 (28%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G++ V+ L+ RL L G + +D E AV FQ + GL +G + T+ Sbjct: 77 KRGDTGRDVRELQARLRQVEWL--VDGPTGTYDDLTERAVSGFQGKRGLPRTGR--TDTV 132 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMG--LRYVLVNIPAA----------------- 203 R+ + + G Y++ PAA Sbjct: 133 TW----------------QRLLG-MSHEPGKWDLYLMGGQPAAAPDPRCTSGRVLCVSKS 175 Query: 204 --SLEAVENGKVGLRSTVIVGRVDRQT 228 +L + +G+ +V G T Sbjct: 176 SRTLRWMIDGRTVSTMSVRFGSQYTPT 202 >gi|223982820|ref|ZP_03633044.1| hypothetical protein HOLDEFILI_00318 [Holdemania filiformis DSM 12042] gi|223965219|gb|EEF69507.1| hypothetical protein HOLDEFILI_00318 [Holdemania filiformis DSM 12042] Length = 543 Score = 45.2 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 56/150 (37%), Gaps = 20/150 (13%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 G V++P + + N + S N+ + N + I P++ T + + Sbjct: 393 GSVQVQRPFADGSVLKYTNSRWLSP-NEEWINGVGITPDQIVELPPVLQTTTASFMMEED 451 Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 Y L S V ++ L P+ FDA A+ Sbjct: 452 ESY-----------------TLDQVSEHVASAQKALAFLDY--PAGRSDGYFDASTAQAL 492 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 + +Q H L+ SG++D++TL+++ V R Sbjct: 493 RWYQSEHNLEASGVLDAATLQSLVSGVRYR 522 >gi|256825620|ref|YP_003149580.1| peptidoglycan-binding domain-containing protein [Kytococcus sedentarius DSM 20547] gi|256689013|gb|ACV06815.1| putative peptidoglycan-binding domain-containing protein [Kytococcus sedentarius DSM 20547] Length = 279 Score = 45.2 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 48/127 (37%), Gaps = 17/127 (13%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 ++ R L G+ + V + ++ +G + + A E AV Q +GL G Sbjct: 40 QVQRRTLRKGDRNDDVLYFQRKIRSAGFWAGTPDG--VYGAQTEQAVWAVQKAYGLRRDG 97 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 +V +ST + +R ++ + RY+ +++ L V +G+V Sbjct: 98 VVGNSTW---------------LAAIRQPRIPVKTTKGRYIEIDLDRQLLFYVVDGQVKQ 142 Query: 216 RSTVIVG 222 G Sbjct: 143 VHNTSTG 149 >gi|220932697|ref|YP_002509605.1| YD repeat protein [Halothermothrix orenii H 168] gi|219994007|gb|ACL70610.1| YD repeat protein [Halothermothrix orenii H 168] Length = 2277 Score = 45.2 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 4/72 (5%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 W + ++ V++++ L G + AV+ +Q GL Sbjct: 2167 WRNI-MKEQQPMMRGDDVEQVQTFLNQQGY---DVTVDGILGPETAGAVRDYQEDKGLSV 2222 Query: 154 SGMVDSSTLEAM 165 G+V +T E + Sbjct: 2223 DGVVGPNTREEI 2234 >gi|291483804|dbj|BAI84879.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. natto BEST195] Length = 297 Score = 44.8 bits (105), Expect = 0.023, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%) Query: 107 SSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 S V +++ L + G+ + AV FQ +GL G+ +T Sbjct: 230 SGEHVFQVQRALAALYFYPDKGAVNNGIDGVYGPKTADAVARFQSVNGLTADGIYGPATK 289 Query: 163 E 163 Sbjct: 290 A 290 >gi|326390405|ref|ZP_08211963.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus JW 200] gi|325993523|gb|EGD51957.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus JW 200] Length = 417 Score = 44.8 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 R L+ G V+ L+ L +G + + F + V FQ L P G Sbjct: 33 TFGSRLLYSGTYGTDVEELQAMLNKAGF--DTGTVDGIFGKMTLNGVLDFQRSKNLVPDG 90 Query: 156 MVDSSTLEAM 165 +V T A+ Sbjct: 91 IVGPKTYAAL 100 >gi|313897890|ref|ZP_07831431.1| peptidoglycan binding domain protein [Clostridium sp. HGF2] gi|312957425|gb|EFR39052.1| peptidoglycan binding domain protein [Clostridium sp. HGF2] Length = 226 Score = 44.8 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 7/80 (8%) Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 Y G+P L G+ V V L++ L G ++ L F +A+ Sbjct: 135 KRYGTPACSAGFPV-----LRSGSRGVYVLILQDALNALGY--STQTLDGVFGGNTRNAL 187 Query: 143 KLFQMRHGLDPSGMVDSSTL 162 +Q +GL G+V T Sbjct: 188 VAYQRDNGLSADGVVGCGTW 207 >gi|312621812|ref|YP_004023425.1| erfk/ybis/ycfs/ynhg family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202279|gb|ADQ45606.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 223 Score = 44.8 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R ++ G++ V V ++ RL G S + + + +E AV ++Q ++ L + + Sbjct: 154 RTIYPGDTGVDVMAVQRRLKELGFYSGS--IDGKYGSALEYAVNIYQKKNKLPVTNKITP 211 Query: 160 STLEAM 165 L M Sbjct: 212 YLLRKM 217 >gi|288556278|ref|YP_003428213.1| sporulation protein-like protein [Bacillus pseudofirmus OF4] gi|288547438|gb|ADC51321.1| sporulation protein-like protein [Bacillus pseudofirmus OF4] Length = 187 Score = 44.8 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 4/65 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDSS 160 L +G+ +V+ L+ L D+ + + AV FQ R L G+ Sbjct: 120 LKVGSRGEAVKTLQRGLK---DMSYHVAVDGVYGPQTRDAVIKFQERFPSLANDGIFGPR 176 Query: 161 TLEAM 165 T E M Sbjct: 177 TKEVM 181 Score = 41.4 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM-RHGLDPSGMV 157 L G+ +V+ ++ L ++ F ++AV FQ + L G+ Sbjct: 41 SGTLKEGSRGENVKIMQRALNR--EMGAELTEDGIFGPNTKTAVLAFQKTKSELKNDGIY 98 Query: 158 DSSTLEAM 165 +T +A+ Sbjct: 99 GPATHKAL 106 >gi|257868295|ref|ZP_05647948.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus casseliflavus EC30] gi|257874432|ref|ZP_05654085.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus casseliflavus EC10] gi|257802409|gb|EEV31281.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus casseliflavus EC30] gi|257808596|gb|EEV37418.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus casseliflavus EC10] Length = 465 Score = 44.8 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 20/39 (51%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 G Y+ V++ + ++G++ L + +I G+ TP Sbjct: 344 FGNTYIEVDLKNQHMWYYKDGQLVLETAIISGKPATPTP 382 >gi|289769547|ref|ZP_06528925.1| lipoprotein [Streptomyces lividans TK24] gi|289699746|gb|EFD67175.1| lipoprotein [Streptomyces lividans TK24] Length = 282 Score = 44.8 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 42/147 (28%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G++ V+ L+ RL L G + +D E AV FQ + GL +G + T+ Sbjct: 78 KRGDTGRDVRELQARLRQVEWL--VDGPTGTYDDLTERAVSGFQGKRGLPRTGR--TDTV 133 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMG--LRYVLVNIPAA----------------- 203 R+ + + G Y++ PAA Sbjct: 134 TW----------------QRLLG-MSHEPGKWDLYLMGGQPAAAPDPRCTSGRVLCVSKS 176 Query: 204 --SLEAVENGKVGLRSTVIVGRVDRQT 228 +L + +G+ +V G T Sbjct: 177 SRTLRWMIDGRTVSTMSVRFGSQYTPT 203 >gi|242035087|ref|XP_002464938.1| hypothetical protein SORBIDRAFT_01g029150 [Sorghum bicolor] gi|241918792|gb|EER91936.1| hypothetical protein SORBIDRAFT_01g029150 [Sorghum bicolor] Length = 371 Score = 44.8 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 7/67 (10%) Query: 103 HLGNSSVSVQRLRERLIISGDLD-------PSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 G+ + L+ L G + + + AFDA++E+AV+ +Q + L +G Sbjct: 57 RRGSHVAGLAELKRYLARFGYMPMPGAAAAAEREPTDAFDAHMEAAVRRYQSKLSLPVTG 116 Query: 156 MVDSSTL 162 +D++TL Sbjct: 117 QLDATTL 123 >gi|163791469|ref|ZP_02185877.1| endolysin [Carnobacterium sp. AT7] gi|159873282|gb|EDP67378.1| endolysin [Carnobacterium sp. AT7] Length = 367 Score = 44.8 bits (105), Expect = 0.024, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 1/69 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 +R L G++ V ++ L + + F AVK FQ+ GL G+V Sbjct: 300 MRTLKSGSTGWDVYAIQAFL-LGNNFQIVGMPDNTFGPNTVRAVKEFQIVSGLQSDGIVG 358 Query: 159 SSTLEAMNV 167 T + + V Sbjct: 359 PKTCQKLVV 367 >gi|322831069|ref|YP_004211096.1| Peptidoglycan-binding domain 1 protein [Rahnella sp. Y9602] gi|321166270|gb|ADW71969.1| Peptidoglycan-binding domain 1 protein [Rahnella sp. Y9602] Length = 510 Score = 44.8 bits (105), Expect = 0.025, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 17/87 (19%) Query: 94 WPELPIRPLHLGNSSVSVQR------LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 +P+ P + N+S L + L + G + +D + VKLFQ Sbjct: 423 FPQTPSGKNAINNTSPEADTAWLDMTLSKILNL------PFGKTGQWDKDLIRKVKLFQQ 476 Query: 148 RHGLDPSGMVDSSTLEAM-----NVPV 169 R GL G V TL + N+PV Sbjct: 477 REGLIVDGRVGKGTLMQIAKRTGNMPV 503 >gi|302391221|ref|YP_003827041.1| cell wall hydrolase SleB [Acetohalobium arabaticum DSM 5501] gi|302203298|gb|ADL11976.1| cell wall hydrolase SleB [Acetohalobium arabaticum DSM 5501] Length = 234 Score = 44.8 bits (105), Expect = 0.025, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G+ V V L+ +L + G + + F AV+ FQ ++ L +G+VD Sbjct: 41 ARDLKYGDEGVDVVFLQVQLKVLGFYEGE--IDGLFGRGTLEAVEKFQNKNDLKVNGIVD 98 Query: 159 SSTLEAM 165 + + + Sbjct: 99 KNVYKYL 105 >gi|291409995|ref|XP_002721290.1| PREDICTED: matrix metalloproteinase 21 [Oryctolagus cuniculus] Length = 574 Score = 44.8 bits (105), Expect = 0.025, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 21/33 (63%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 A + AV+ FQ + L SG +D++TL AMN P Sbjct: 82 AALAEAVRRFQQVNALPASGELDAATLAAMNRP 114 >gi|225570400|ref|ZP_03779425.1| hypothetical protein CLOHYLEM_06500 [Clostridium hylemonae DSM 15053] gi|225160771|gb|EEG73390.1| hypothetical protein CLOHYLEM_06500 [Clostridium hylemonae DSM 15053] Length = 421 Score = 44.8 bits (105), Expect = 0.025, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G S V +++E+L +I+G P + E+AV+ FQ GL + Sbjct: 337 PGYNLEIGASGDKVLQMQEQLNVIAGAYPAIPKITADGVYGPATEAAVRKFQSVFGLPET 396 Query: 155 GMVDSSTLE 163 G+VD T Sbjct: 397 GIVDYRTWY 405 >gi|228907493|ref|ZP_04071350.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus thuringiensis IBL 200] gi|228851985|gb|EEM96782.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus thuringiensis IBL 200] Length = 335 Score = 44.8 bits (105), Expect = 0.026, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 9/69 (13%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGM 156 P +P+ G+ +++ ++ L +S + F E VK +Q L G+ Sbjct: 274 PGKPIKQGDRGRNIEAIQRTLKVS--------VDGIFGKETEEKVKEYQRNSSFLSIDGV 325 Query: 157 VDSSTLEAM 165 V T A+ Sbjct: 326 VGMQTWYAL 334 >gi|71898434|ref|ZP_00680606.1| Histidinol-phosphate aminotransferase [Xylella fastidiosa Ann-1] gi|71731747|gb|EAO33806.1| Histidinol-phosphate aminotransferase [Xylella fastidiosa Ann-1] Length = 365 Score = 44.8 bits (105), Expect = 0.026, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 73/204 (35%), Gaps = 29/204 (14%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRL 114 FL + + IP+ ETI QT A + G + ++P L + L Sbjct: 157 FLCSPSNPVGAAIPLQQIETILQTLAGTALVVVDEAYGEFSDVPSVVPLL-ARYPHLVVL 215 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQM------------RHGLDPSGMVDSSTL 162 R L + L + SV DA++ + ++ Q GL Sbjct: 216 RT-LSKAHALAAVRIGSVIADAHLVAVLRRCQAPYPLPTPCVSLAEQGLSA--------- 265 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR----ST 218 A+ + R+ +++ R++ L G+R V + L ++ + + + Sbjct: 266 AALQITAQ-RVAEIRAERERLRAALACLSGVRRVYPSQGNFLLVRFDDAEAAFQALYAAG 324 Query: 219 VIVGRVDRQTPILHSRINRIMFNP 242 V+V R R P LH + + P Sbjct: 325 VVV-RDQRAAPQLHDALRLTVGTP 347 >gi|256751507|ref|ZP_05492384.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749591|gb|EEU62618.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter ethanolicus CCSD1] Length = 422 Score = 44.8 bits (105), Expect = 0.026, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 R L+ G V+ L+ L +G + + F + V FQ L P G Sbjct: 38 TFGSRLLYSGTYGTDVEELQAMLNKAGF--DTGTVDGIFGKMTLNGVLDFQRSKNLVPDG 95 Query: 156 MVDSSTLEAM 165 +V T A+ Sbjct: 96 IVGPKTYAAL 105 >gi|121533679|ref|ZP_01665506.1| 3D domain protein [Thermosinus carboxydivorans Nor1] gi|121307670|gb|EAX48585.1| 3D domain protein [Thermosinus carboxydivorans Nor1] Length = 210 Score = 44.8 bits (105), Expect = 0.026, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 7/94 (7%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L R L +G + V+ L+ RL + + F + AVK+F+ + L+ G Sbjct: 29 ALGERVLQVGATGDDVRELQIRLNELDFY--AGTVDGVFGPQTQHAVKMFEKANNLESDG 86 Query: 156 MVDSSTLEAMNVPVDLRIRQLQVNL-MRIKKLLE 188 + D L M ++ ++ NL R K +L+ Sbjct: 87 IADQDLLTFM----QKKVPKVSRNLPERYKTVLD 116 >gi|16078346|ref|NP_389164.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|221309139|ref|ZP_03590986.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|221313466|ref|ZP_03595271.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318388|ref|ZP_03599682.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. JH642] gi|221322662|ref|ZP_03603956.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. SMY] gi|731171|sp|P39800|XLYA_BACSU RecName: Full=N-acetylmuramoyl-L-alanine amidase XlyA; AltName: Full=Autolysin; AltName: Full=Cell wall hydrolase; Flags: Precursor gi|496176|gb|AAA22645.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|535797|emb|CAA85403.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis] gi|1225965|emb|CAA94049.1| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] gi|2633635|emb|CAB13138.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str. 168] Length = 297 Score = 44.8 bits (105), Expect = 0.026, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%) Query: 107 SSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 S V +++ L + G+ + AV FQ +GL G+ +T Sbjct: 230 SGEHVFQVQRALAALYFYPDKGAVNNGIDGVYGPKTADAVARFQSVNGLTADGIYGPAT 288 >gi|167036901|ref|YP_001664479.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115320|ref|YP_004185479.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855735|gb|ABY94143.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928411|gb|ADV79096.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 422 Score = 44.8 bits (105), Expect = 0.026, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 R L+ G V+ L+ L +G + + F + V FQ L P G Sbjct: 38 TFGSRLLYSGTYGTDVEELQAMLNKAGF--DTGTVDGIFGKMTLNGVLDFQRSKNLVPDG 95 Query: 156 MVDSSTLEAM 165 +V T A+ Sbjct: 96 IVGPKTYAAL 105 >gi|308272732|emb|CBX29336.1| hypothetical protein N47_J03170 [uncultured Desulfobacterium sp.] Length = 234 Score = 44.8 bits (105), Expect = 0.026, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 7/76 (9%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 +LP P + R ++ L +G K L+ +D AVK FQ G+ G Sbjct: 155 KLPSEPEK-----NRIMRFQKLLKEAGTYH--KSLTGTYDKDTLLAVKQFQSSKGIKQDG 207 Query: 156 MVDSSTLEAMNVPVDL 171 + S TL + +D Sbjct: 208 IAGSQTLMLLYRSIDR 223 >gi|229527893|ref|ZP_04417284.1| VgrG protein [Vibrio cholerae 12129(1)] gi|229334255|gb|EEN99740.1| VgrG protein [Vibrio cholerae 12129(1)] Length = 1037 Score = 44.8 bits (105), Expect = 0.026, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 30/147 (20%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 I + L ++ S ++ ND + + SD+ S E ++ + Y+ Sbjct: 671 IDVASLPTMMPSSANNTANDEPVAEEKTPERILKSDLLKPSDELEKLAKRQASAYRQ--- 727 Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH- 149 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 728 --------------GNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQ 773 Query: 150 -----------GLDPSGMVDSSTLEAM 165 G G+V TL A+ Sbjct: 774 PSHQTHPSYSIG-PVDGIVGKGTLLAL 799 >gi|321315030|ref|YP_004207317.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis BSn5] gi|320021304|gb|ADV96290.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis BSn5] Length = 297 Score = 44.8 bits (105), Expect = 0.027, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%) Query: 107 SSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 S V +++ L + G+ + AV FQ +GL G+ +T Sbjct: 230 SGEHVFQVQRALAALYFYPDKGAVNNGIDGIYGPKTADAVARFQSVNGLTADGIYGPATK 289 Query: 163 E 163 Sbjct: 290 A 290 >gi|254502110|ref|ZP_05114261.1| phage lysozyme, putative [Labrenzia alexandrii DFL-11] gi|222438181|gb|EEE44860.1| phage lysozyme, putative [Labrenzia alexandrii DFL-11] Length = 296 Score = 44.8 bits (105), Expect = 0.027, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGMVDSSTLEAMN 166 + L+ L + G + F A ++AVK FQ + L G+ +T A+ Sbjct: 171 GSDIMELQRSLKMLGF--DPGPIDGFFGAQTKAAVKDFQKAYPPLAVDGIPGPATRSALA 228 Query: 167 VPVDLR 172 + LR Sbjct: 229 RSISLR 234 >gi|239828311|ref|YP_002950935.1| carboxyl-terminal protease [Geobacillus sp. WCH70] gi|239808604|gb|ACS25669.1| carboxyl-terminal protease [Geobacillus sp. WCH70] Length = 480 Score = 44.8 bits (105), Expect = 0.027, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 29/126 (23%) Query: 82 IAFYQDILSRGGW-------PELPIR--------PLHLG------NSSVSVQRLRERLII 120 + Y+ + G W P++ ++ PLH+ ++ V+ ++ L Sbjct: 352 LTLYKWLTPDGHWIHKKGVKPDVEVKQPDYFHVSPLHIEKELSFDMNNEQVKSAQQMLKG 411 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR------ 174 G DP + F ESAVK FQ + L +G +D +T E + V IR Sbjct: 412 LGF-DPGRTDG-YFSKETESAVKAFQKANKLPQTGKIDKNTAEVLQAKVMDAIRDDNNDV 469 Query: 175 QLQVNL 180 QL+ + Sbjct: 470 QLKTAM 475 >gi|311280300|ref|YP_003942531.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] gi|308749495|gb|ADO49247.1| ErfK/YbiS/YcfS/YnhG family protein [Enterobacter cloacae SCF1] Length = 300 Score = 44.8 bits (105), Expect = 0.027, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 64/216 (29%), Gaps = 60/216 (27%) Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGR 223 +N+P +QL + +++N L G + + +G+ Sbjct: 79 LNIP-----QQLIL----------PDTPHEGIVINSAEMRLYYYPKGTNTVIVLPIGIGQ 123 Query: 224 VDRQTPI-LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVF 282 + + TPI + + R P W + +Y+ N Sbjct: 124 LGKDTPINWTTAVERKKAGPTWT-----------PTAKMHAEYIAAGN------------ 160 Query: 283 VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 G N M + H T F +R + G Sbjct: 161 ------------PLPSVVPAGPDNPMGLYALYIGRLYAI--HGTNAN--FGIGLR-VSHG 203 Query: 343 CVRVRNIIDLDVWLLKDTPTWSR-YHIEEVVKTRKT 377 CVR+RN D +L ++ P +R I+E VK Sbjct: 204 CVRLRN--DDIKFLFQNVPVGTRVQFIDEAVKATTE 237 >gi|260888125|ref|ZP_05899388.1| LysM domain/NLP/P60 family protein [Selenomonas sputigena ATCC 35185] gi|330839997|ref|YP_004414577.1| NLP/P60 protein [Selenomonas sputigena ATCC 35185] gi|260862154|gb|EEX76654.1| LysM domain/NLP/P60 family protein [Selenomonas sputigena ATCC 35185] gi|329747761|gb|AEC01118.1| NLP/P60 protein [Selenomonas sputigena ATCC 35185] Length = 278 Score = 44.8 bits (105), Expect = 0.027, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V +L++ L +G L S F + +SAV FQ L +G+VD T Sbjct: 30 LSENSHGHDVFKLQKELKRTGYL--SDEPDGIFGSRTKSAVLAFQRAQSLKETGVVDRET 87 Query: 162 LEAM 165 + Sbjct: 88 WSRL 91 >gi|290956378|ref|YP_003487560.1| penicillin-binding membrane protein [Streptomyces scabiei 87.22] gi|260645904|emb|CBG68995.1| putative penicillin-binding membrane protein [Streptomyces scabiei 87.22] Length = 356 Score = 44.8 bits (105), Expect = 0.027, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ +V++L +RL+ D + F + V+ FQ R + G+V Sbjct: 291 TLQQGSHGPAVRKL-QRLLNDHLPDLQLAVDGRFGPVTDGRVRQFQQRFAIVVDGIVGPQ 349 Query: 161 TLEAM 165 T + Sbjct: 350 TWGHL 354 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 8/88 (9%) Query: 84 FYQDILSRG---GWPE-LPIRPLHLGNSSVSVQRLRERLIISGDLD--PSKGLSVAFDAY 137 FY D+ S G G P+ + + G +V++L +RL ++G + PS + F Sbjct: 191 FYLDVRSAGPGSGTPDGIGTPTVRQGAQGEAVRKL-QRL-LNGHVPDLPSLAVDGDFGPA 248 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ V+ +Q R + G+V T + Sbjct: 249 TDARVREYQRRVEIIVDGIVGPQTWGML 276 >gi|228969115|ref|ZP_04130029.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus thuringiensis serovar sotto str. T04001] gi|228790604|gb|EEM38291.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus thuringiensis serovar sotto str. T04001] Length = 335 Score = 44.8 bits (105), Expect = 0.027, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 9/69 (13%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGM 156 P +P+ G+ +++ ++ L +S + F E VK +Q L G+ Sbjct: 274 PGKPIKRGDRGRNIEAIQRTLKLS--------VDGVFGKETEEKVKEYQRNSSFLSIDGV 325 Query: 157 VDSSTLEAM 165 V T A+ Sbjct: 326 VGMQTWYAL 334 >gi|229179581|ref|ZP_04306933.1| Peptidoglycan-binding domain 1 protein [Bacillus cereus 172560W] gi|228603875|gb|EEK61344.1| Peptidoglycan-binding domain 1 protein [Bacillus cereus 172560W] Length = 571 Score = 44.8 bits (105), Expect = 0.027, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGL 151 P + L G+ +++V+ +++ L I D P ++ +++ +AVK FQ + L Sbjct: 350 KSFPGKILKEGDQNLAVETIQKYLYHIRKRYTDIPEVRVNGTYNSSTANAVKAFQRQFQL 409 Query: 152 DPSGMVDSSTLEAMN 166 +G VD T MN Sbjct: 410 PENGAVDEVTWNKMN 424 >gi|315268212|gb|ADT95065.1| Peptidoglycan-binding domain 1 protein [Shewanella baltica OS678] Length = 273 Score = 44.8 bits (105), Expect = 0.027, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G++ V+ L++RL +G S + F + A++ FQ + L +G Sbjct: 2 TLRKGSNGSQVRDLQQRLNAAG---ASLVVDGWFGDATQKAIEQFQDKQDLPRTGYAGVR 58 Query: 161 TLEAM 165 TL + Sbjct: 59 TLALL 63 >gi|293402331|ref|ZP_06646468.1| spore cortex-lytic enzyme SleC [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304178|gb|EFE45430.1| spore cortex-lytic enzyme SleC [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 356 Score = 44.8 bits (105), Expect = 0.027, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 8/76 (10%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQM 147 G W R L G+ + VQ+L+ L + ++ P S F A +E +V+ FQ Sbjct: 274 GLW---TGRVLRRGDVGIEVQQLQYFLSVIAQTYTNIPPVDIDS-RFGAGLERSVRAFQR 329 Query: 148 RHGLDPSGMVDSSTLE 163 GL G+V T Sbjct: 330 EFGLAQDGLVGQVTWN 345 Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 4/75 (5%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHG 150 P P L G+ +V ++E L ++ F E AV+ FQ + Sbjct: 175 PSYPGYALRRGSQGQNVFIIQELLNGIAVNYPNIPLIYPPDGIFGEVTERAVRTFQQQFN 234 Query: 151 LDPSGMVDSSTLEAM 165 L G+V +T + Sbjct: 235 LSVDGIVGQTTWNQI 249 >gi|229073419|ref|ZP_04206555.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus cereus F65185] gi|228709726|gb|EEL61764.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Bacillus cereus F65185] Length = 335 Score = 44.8 bits (105), Expect = 0.027, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 9/69 (13%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGM 156 P +P+ G+ +++ ++ L +S + F E VK +Q L G+ Sbjct: 274 PGKPIKRGDRGRNIEAIQRTLRVS--------VDGIFGKETEEKVKEYQRNSSFLSIDGV 325 Query: 157 VDSSTLEAM 165 V T A+ Sbjct: 326 VGMQTWYAL 334 >gi|254465139|ref|ZP_05078550.1| Putative peptidoglycan binding domain protein [Rhodobacterales bacterium Y4I] gi|206686047|gb|EDZ46529.1| Putative peptidoglycan binding domain protein [Rhodobacterales bacterium Y4I] Length = 3030 Score = 44.8 bits (105), Expect = 0.028, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 I P+ ++ V L+E L + G +D + AF ++A++ Q R GL PSG V Sbjct: 6 IHPISFLDTGEHVAALQEALGVEGFTVDAEELQHAAFGRSTQTALRELQERVGLTPSGNV 65 Query: 158 DSSTLEAMNVPVDLR 172 D++T A++ +D R Sbjct: 66 DAATARAISERLDRR 80 >gi|206973101|ref|ZP_03234023.1| peptidoglycan-binding domain 1 protein [Bacillus cereus AH1134] gi|206731985|gb|EDZ49185.1| peptidoglycan-binding domain 1 protein [Bacillus cereus AH1134] Length = 595 Score = 44.8 bits (105), Expect = 0.028, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGL 151 P L G+ +V +++ L I LD P +S FDA +AVK FQ + + Sbjct: 368 KSFPGYNLKEGDQKGAVLTVQKYLFHIRKKYLDIPEVIISGKFDANTVNAVKKFQKIYEI 427 Query: 152 DPSGMVDSSTLEAMN 166 SG+VD T +N Sbjct: 428 PESGIVDELTWNKLN 442 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 8/84 (9%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ SV+ L+ L G D + + E +VK FQ G +G+V Sbjct: 458 LQNGSQGESVKTLQTLLKKFGYYDGQ--IDGFYGLGTEKSVKEFQKIKGFTVTGIVRKEL 515 Query: 162 LEAMN------VPVDLRIRQLQVN 179 ++ + L N Sbjct: 516 WRVLDELQHTYGSPRTTLNSLANN 539 >gi|311068810|ref|YP_003973733.1| spore cortex-lytic enzyme [Bacillus atrophaeus 1942] gi|310869327|gb|ADP32802.1| spore cortex-lytic enzyme [Bacillus atrophaeus 1942] Length = 309 Score = 44.8 bits (105), Expect = 0.028, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-SGMVDSS 160 + G + V L+ RL +G + + + AV+ FQ + GL G+V + Sbjct: 35 IQRGATGDDVIELQARLQYNGYYNG--KIDGVYGWGTYWAVRNFQNQFGLKEIDGLVGAQ 92 Query: 161 TLEAM 165 T + + Sbjct: 93 TKQIL 97 >gi|327440793|dbj|BAK17158.1| cell wall hydrolyses [Solibacillus silvestris StLB046] Length = 260 Score = 44.8 bits (105), Expect = 0.028, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G V L+ RL + + Y A++ FQ ++GL G Sbjct: 21 AFSGQDVQRGAFGDDVIELQARLQYLSYYNGKIDGKFGYGTY--WALRNFQEQYGLPVDG 78 Query: 156 MVDSSTLEAM 165 + ST E + Sbjct: 79 IAGRSTKEKL 88 >gi|225427814|ref|XP_002275675.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 289 Score = 44.8 bits (105), Expect = 0.028, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G+ +Q++++ L G L + S FD +ES++K FQ + L+ +G +D+ Sbjct: 51 KKGDKREGIQKVKQYLQRYGYLSSTHYSQMGSDDFDDALESSLKAFQTFYHLNSTGTLDA 110 Query: 160 STLEAMNVP 168 T M+ P Sbjct: 111 PTATLMSRP 119 >gi|28199152|ref|NP_779466.1| histidinol-phosphate aminotransferase [Xylella fastidiosa Temecula1] gi|71274439|ref|ZP_00650727.1| Histidinol-phosphate aminotransferase [Xylella fastidiosa Dixon] gi|71900435|ref|ZP_00682567.1| Histidinol-phosphate aminotransferase [Xylella fastidiosa Ann-1] gi|182681883|ref|YP_001830043.1| histidinol-phosphate aminotransferase [Xylella fastidiosa M23] gi|32129587|sp|Q87C30|HIS8_XYLFT RecName: Full=Histidinol-phosphate aminotransferase; AltName: Full=Imidazole acetol-phosphate transaminase gi|226702185|sp|B2I5Y0|HIS8_XYLF2 RecName: Full=Histidinol-phosphate aminotransferase; AltName: Full=Imidazole acetol-phosphate transaminase gi|28057250|gb|AAO29115.1| histidinol-phosphate aminotransferase [Xylella fastidiosa Temecula1] gi|71164171|gb|EAO13885.1| Histidinol-phosphate aminotransferase [Xylella fastidiosa Dixon] gi|71729800|gb|EAO31899.1| Histidinol-phosphate aminotransferase [Xylella fastidiosa Ann-1] gi|182631993|gb|ACB92769.1| histidinol-phosphate aminotransferase [Xylella fastidiosa M23] gi|307578137|gb|ADN62106.1| histidinol-phosphate aminotransferase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 365 Score = 44.8 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 29/204 (14%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRL 114 FL + + IP+ ETI QT A + G + ++P L + L Sbjct: 157 FLCSPSNPVGAAIPLQQIETILQTLAGTALVVVDEAYGEFSDVPSVVPLL-ARYPHLVVL 215 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQM------------RHGLDPSGMVDSSTL 162 R L + L + SV DA++ + ++ Q GL Sbjct: 216 RT-LSKAHALAAVRIGSVIADAHLVAVLRRCQAPYPLPTPCVSLAEQGLSA--------- 265 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR----ST 218 A++V R+ +++ R++ L G+R V + L ++ + + + Sbjct: 266 AALHVTAQ-RVAEIRAERERLRAALACLSGVRRVYPSQGNFLLVRFDDAEAAFQALYAAG 324 Query: 219 VIVGRVDRQTPILHSRINRIMFNP 242 V+V R R P LH + + P Sbjct: 325 VVV-RDQRAAPQLHDALRLTVGTP 347 >gi|332307806|ref|YP_004435657.1| Peptidoglycan-binding domain 1 protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175135|gb|AEE24389.1| Peptidoglycan-binding domain 1 protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 199 Score = 44.8 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 ++RL L S FD A K FQ +GL +G+ D +TL MN Sbjct: 145 KQRLRKMDYLK--DMGSSDFDQATLDAFKHFQRDNGLAQTGVPDQNTL--MN 192 >gi|168186698|ref|ZP_02621333.1| ErfK/YbiS/YcfS/YnhG family [Clostridium botulinum C str. Eklund] gi|169295310|gb|EDS77443.1| ErfK/YbiS/YcfS/YnhG family [Clostridium botulinum C str. Eklund] Length = 309 Score = 44.8 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL LG V+ L+ L G + G F + E A+ FQ R+ L+ + S Sbjct: 85 PLRLGCKGNDVKALQNNLNKFGYKINADG---IFGSSTEIALYDFQRRNNLNRDCIAGES 141 Query: 161 TLEAMNVPVDLR 172 TL+ + + + Sbjct: 142 TLKRLALEPTEK 153 >gi|29566134|ref|NP_817703.1| gp25 [Mycobacterium phage Che9c] gi|29424859|gb|AAN12586.1| gp25 [Mycobacterium phage Che9c] Length = 317 Score = 44.8 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%) Query: 103 HLGNSSVSVQRLRERLI--ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 LG+++ V+ L++ L SG + F E V FQ R G+ G+V Sbjct: 182 QLGDNNDRVRSLQQFLNDNFSGY--SKLDVDGDFGPLTEKVVAEFQRRVGVAADGIVGPV 239 Query: 161 TLEAM 165 TL + Sbjct: 240 TLAKL 244 >gi|296329600|ref|ZP_06872085.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673998|ref|YP_003865670.1| N-acetylmuramoyl-L-alanine amidase; PBSZ phage [Bacillus subtilis subsp. spizizenii str. W23] gi|296153098|gb|EFG93962.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412242|gb|ADM37361.1| N-acetylmuramoyl-L-alanine amidase; PBSZ phage [Bacillus subtilis subsp. spizizenii str. W23] Length = 297 Score = 44.8 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 4/61 (6%) Query: 107 SSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 S V +++ L + G+ + AV FQ +GL G+ +T Sbjct: 230 SGEHVFQVQRALAALYFYPDKGAVNNGIDGIYGPKTADAVARFQSVNGLTADGIYGPATK 289 Query: 163 E 163 Sbjct: 290 A 290 >gi|296131512|ref|YP_003638762.1| Peptidoglycan-binding domain 1 protein [Cellulomonas flavigena DSM 20109] gi|296023327|gb|ADG76563.1| Peptidoglycan-binding domain 1 protein [Cellulomonas flavigena DSM 20109] Length = 157 Score = 44.8 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERLI--ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L G+S VQ L++ +P+ F E V+ Q R G++ G+ Sbjct: 73 LKRGDSGAGVQALQKAYNSCYKALYEPAIAEDGVFGPTTEDRVRQMQRREGIEVDGIAGE 132 Query: 160 STLEAM 165 T ++ Sbjct: 133 VTRNSI 138 >gi|209972932|ref|YP_002300379.1| gp19.3 [Bacillus phage SPO1] gi|209871252|gb|ACI91008.1| gp19.3 [Bacillus phage SPO1] Length = 343 Score = 44.8 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++S +V+ ++E+L +G F A ESA+K FQ G+ G+ ++ Sbjct: 179 LSKGDNSSAVKTMQEKLNAAGF--SVGKADGIFGAKTESALKAFQKSVGISADGLYGPTS 236 Query: 162 LEAM 165 + Sbjct: 237 KAKL 240 Score = 38.7 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 127 SKGLSVAFDAYVESAVKLFQM-RHGLDPSGMVDSSTLEAM 165 + G+ + + A++ +Q + GL G+ +T +A+ Sbjct: 292 NNGIDGYWGPKTQDAIRRYQSTKSGLKTDGIYGPATRKAL 331 >gi|297155629|gb|ADI05341.1| putative serine-threonine protein kinase [Streptomyces bingchenggensis BCW-1] Length = 562 Score = 44.8 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ +V++++ L G+ F ++AV FQ H L G V T Sbjct: 498 QQGSRGAAVRQVQCILKARKYDIGPHGIDGQFGPDTKAAVIAFQRDHNLHRDGQVGEDTW 557 Query: 163 EAM 165 A+ Sbjct: 558 PAL 560 >gi|253687096|ref|YP_003016286.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753674|gb|ACT11750.1| ErfK/YbiS/YcfS/YnhG family protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 356 Score = 44.8 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 41/161 (25%), Gaps = 42/161 (26%) Query: 189 QKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVI 246 +++N L G K + + +G + + TPI + + R P W Sbjct: 92 PDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGIGELGKDTPINWTTSVQRKKAGPTWT- 150 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 + +Y G N Sbjct: 151 ----------PTAKMHAEYAAR------------------------GETLQKVFPAGPDN 176 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVR 347 M + + H T F +R + GCVR+R Sbjct: 177 PMGLYALYIGNLYAI--HGTNAN--FGIGLR-VSHGCVRLR 212 >gi|332670253|ref|YP_004453261.1| peptidoglycan-binding domain 1 protein [Cellulomonas fimi ATCC 484] gi|332339291|gb|AEE45874.1| Peptidoglycan-binding domain 1 protein [Cellulomonas fimi ATCC 484] Length = 373 Score = 44.8 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 22/126 (17%) Query: 51 RFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGG--WPELPIRPLHLGNS- 107 + D L V ID D P +A + W +L L ++ Sbjct: 166 QADAELTAVQQQIDDDTP---------LREASERFNAAAVALEAAWLQLYAATGCLTDAE 216 Query: 108 ----SVSVQR----LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 V L+E L +G + + + +AV+ Q HGL +G VD Sbjct: 217 QAAAHDVVAARTSTLQESLSATGHYTGT--IDGIYGPATVAAVESLQSAHGLPVTGTVDR 274 Query: 160 STLEAM 165 +T A+ Sbjct: 275 ATDAAL 280 >gi|256785652|ref|ZP_05524083.1| lipoprotein [Streptomyces lividans TK24] Length = 270 Score = 44.8 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 48/147 (32%), Gaps = 42/147 (28%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G++ V+ L+ RL L G + +D E AV FQ + GL +G D T+ Sbjct: 66 KRGDTGRDVRELQARLRQVEWL--VDGPTGTYDDLTERAVSGFQGKRGLPRTGRTD--TV 121 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMG--LRYVLVNIPAA----------------- 203 R+ + + G Y++ PAA Sbjct: 122 TW----------------QRLLG-MSHEPGKWDLYLMGGQPAAAPDPRCTSGRVLCVSKS 164 Query: 204 --SLEAVENGKVGLRSTVIVGRVDRQT 228 +L + +G+ +V G T Sbjct: 165 SRTLRWMIDGRTVSTMSVRFGSQYTPT 191 >gi|312109514|ref|YP_003987830.1| carboxyl-terminal protease [Geobacillus sp. Y4.1MC1] gi|311214615|gb|ADP73219.1| carboxyl-terminal protease [Geobacillus sp. Y4.1MC1] Length = 480 Score = 44.8 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 29/126 (23%) Query: 82 IAFYQDILSRGGW-------PELPIR--------PLHLG------NSSVSVQRLRERLII 120 + Y+ + G W P++ ++ PLH+ ++ V+ ++ L Sbjct: 352 LTLYKWLTPDGHWIHKKGVKPDVEVKQPDYFHASPLHIEKALSFDMNNEQVKNAQQMLKG 411 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR------ 174 G DP + F E+AVK FQ + L P+G +D +T + + V IR Sbjct: 412 IGF-DPGRTDG-YFSKETEAAVKAFQKANKLPPTGKIDKNTADVLQAKVMEAIRNEDNDV 469 Query: 175 QLQVNL 180 QL+ + Sbjct: 470 QLKTAM 475 >gi|239979525|ref|ZP_04702049.1| hypothetical protein SalbJ_08818 [Streptomyces albus J1074] gi|291451393|ref|ZP_06590783.1| predicted protein [Streptomyces albus J1074] gi|291354342|gb|EFE81244.1| predicted protein [Streptomyces albus J1074] Length = 301 Score = 44.8 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 19/37 (51%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 G+ A+ E AVK Q R GL G++ T EA+ Sbjct: 263 GIDGAYGPATERAVKRLQDREGLVVDGIMGPHTWEAL 299 >gi|147790365|emb|CAN59960.1| hypothetical protein VITISV_011608 [Vitis vinifera] Length = 319 Score = 44.4 bits (104), Expect = 0.031, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 6/72 (8%) Query: 103 HLGNSSVSVQRLRERLIISGDLD------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 G+ + +L++ L G L + + FD +E A+K +Q + L SG Sbjct: 42 QKGHKVKDIHKLKKYLQQFGYLSYSHSEHQTHADNDDFDDLLEFAIKTYQTNYYLKASGN 101 Query: 157 VDSSTLEAMNVP 168 +DS T+ M P Sbjct: 102 LDSETVSVMVKP 113 >gi|256824798|ref|YP_003148758.1| peptidoglycan binding protein [Kytococcus sedentarius DSM 20547] gi|256688191|gb|ACV05993.1| putative peptidoglycan binding protein [Kytococcus sedentarius DSM 20547] Length = 335 Score = 44.4 bits (104), Expect = 0.031, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 96 ELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 ++P R + G V++L++ L+ G + + D A++ +Q G+D + Sbjct: 88 KVPAFRKIGAGTEGADVKQLQQLLMQGGHFAGTVDGTAGKD--TVQAIRAWQRSQGIDAT 145 Query: 155 GMVDSS 160 G+V Sbjct: 146 GVVGPG 151 >gi|33599771|ref|NP_887331.1| putative type II secretion system protein [Bordetella bronchiseptica RB50] gi|33567368|emb|CAE31281.1| putative type II secretion system protein [Bordetella bronchiseptica RB50] Length = 459 Score = 44.4 bits (104), Expect = 0.031, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 D+ R W G SVQ L++RL +G L + + A A+ FQ Sbjct: 367 DLAWRAPWRPEDFAS---GGPHPSVQALQQRLGAAGLL--ATRADGIYGAQTRQALASFQ 421 Query: 147 MRHGLDPSG 155 H L +G Sbjct: 422 RDHALPATG 430 >gi|304407661|ref|ZP_07389312.1| carboxyl-terminal protease [Paenibacillus curdlanolyticus YK9] gi|304343144|gb|EFM08987.1| carboxyl-terminal protease [Paenibacillus curdlanolyticus YK9] Length = 487 Score = 44.4 bits (104), Expect = 0.031, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L V+ L++ L G F A + AV+ FQ L +G+V+++T Sbjct: 393 LRKDQLGDDVRSLQQMLKALGY--KVDRSDGYFSAVTDQAVRQFQQASDLPVNGVVNNAT 450 Query: 162 LEAM 165 +A+ Sbjct: 451 ADAI 454 >gi|148257802|ref|YP_001242387.1| hypothetical protein BBta_6577 [Bradyrhizobium sp. BTAi1] gi|146409975|gb|ABQ38481.1| hypothetical protein BBta_6577 [Bradyrhizobium sp. BTAi1] Length = 404 Score = 44.4 bits (104), Expect = 0.031, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 9/92 (9%) Query: 81 AIAFYQDILSRGGWP-----ELPIRPLHLGN--SSVSVQRLRERLIISGDLDPSKGLSVA 133 A Y L+ G W P H + S+ + L+ +L G Sbjct: 181 AANRYDARLA-GAWKRWVRKTASTAPPHAPDDLSADEITDLQRKLRRLGYASVGNPDG-K 238 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F A+ FQ GL SG +D++T EA+ Sbjct: 239 FGTKTVGALAQFQAHEGLPVSGRLDAATREAL 270 >gi|170730538|ref|YP_001775971.1| histidinol-phosphate aminotransferase [Xylella fastidiosa M12] gi|226702186|sp|B0U3B2|HIS8_XYLFM RecName: Full=Histidinol-phosphate aminotransferase; AltName: Full=Imidazole acetol-phosphate transaminase gi|167965331|gb|ACA12341.1| histidinol-phosphate aminotransferase [Xylella fastidiosa M12] Length = 365 Score = 44.4 bits (104), Expect = 0.031, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 29/204 (14%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRL 114 FL + + IP+ ETI QT A + G + ++P L + L Sbjct: 157 FLCSPSNPVGAAIPLQQIETILQTLAGTALVVVDEAYGEFSDVPSVVPLL-ARYPHLVVL 215 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQM------------RHGLDPSGMVDSSTL 162 R L + L + SV DA++ + ++ Q GL Sbjct: 216 RT-LSKAHALAAVRIGSVIADAHLVAVLRRCQAPYPLPTPCVSLAEQGLSA--------- 265 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLR----ST 218 A++V R+ +++ R++ L G+R V + L ++ + + + Sbjct: 266 AALHVTAQ-RVAEIRAERERLRAALACLSGVRRVYPSQGNFLLVRFDDAEAAFQALYAAG 324 Query: 219 VIVGRVDRQTPILHSRINRIMFNP 242 V+V R R P LH + + P Sbjct: 325 VVV-RDQRAAPQLHDALRLTVGTP 347 >gi|310828762|ref|YP_003961119.1| Peptidoglycan-binding lysin domain protein [Eubacterium limosum KIST612] gi|308740496|gb|ADO38156.1| Peptidoglycan-binding lysin domain protein [Eubacterium limosum KIST612] Length = 330 Score = 44.4 bits (104), Expect = 0.032, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 5/60 (8%) Query: 109 VSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V R++E L G D+ G +A+K FQ ++GL+ G+ T A+ + Sbjct: 275 TEVARIQEALKRHGHDIPVDGGAGPI----TFAALKDFQAKNGLEADGICGDLTRAALGI 330 >gi|229526247|ref|ZP_04415651.1| VgrG protein [Vibrio cholerae bv. albensis VL426] gi|229336405|gb|EEO01423.1| VgrG protein [Vibrio cholerae bv. albensis VL426] Length = 1017 Score = 44.4 bits (104), Expect = 0.032, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 30/147 (20%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 I + L ++ S ++ ND + + SD+ S E ++ + Y+ Sbjct: 671 IDVASLPTMMPSSANNTANDEPVAEEKTPERILKSDLLKPSDELEKLAKRQASAYRQ--- 727 Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH- 149 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 728 --------------GNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQ 773 Query: 150 -----------GLDPSGMVDSSTLEAM 165 G G+V TL A+ Sbjct: 774 PSHQTHPSYSIG-AVDGIVGKGTLLAL 799 >gi|18496915|ref|NP_569765.1| hypothetical protein TM4_gp30 [Mycobacterium phage TM4] gi|4336066|gb|AAD17597.1| gp30 [Mycobacterium phage TM4] Length = 400 Score = 44.4 bits (104), Expect = 0.032, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 9/83 (10%) Query: 103 HLGNSSVSVQRLRERLII----SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 LG V+ ++++LI D P S +D ++A+ FQ R GL +G+ D Sbjct: 7 QLGMQGEQVKVIQQKLIAKYQWVRDRYPRLTASGVYDVNTQAAIVEFQFRAGLPVTGIAD 66 Query: 159 SSTLEAMNV-----PVDLRIRQL 176 +T + P RI L Sbjct: 67 YATQVRLGAVAPAPPPRQRIMVL 89 >gi|168184550|ref|ZP_02619214.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum Bf] gi|237795281|ref|YP_002862833.1| peptidoglycan-binding domain 1 [Clostridium botulinum Ba4 str. 657] gi|182672321|gb|EDT84282.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum Bf] gi|229262124|gb|ACQ53157.1| peptidoglycan-binding domain 1 [Clostridium botulinum Ba4 str. 657] Length = 281 Score = 44.4 bits (104), Expect = 0.033, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 5/113 (4%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKAI--AFYQDILSRGGWPELPIRPLHLGNSSVSVQ 112 + + + P SK + + Y ++ SR + LP G + Sbjct: 167 LVGKTTPTTSNSKPSTSKPVQTNKKHPLINQLYAEM-SRQDFNTLP--TCRQGARGNITK 223 Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +++ LI G S G F +A+K Q L G+V T + Sbjct: 224 TIQQMLINIGYPVGSYGADRVFGNGTVTAIKALQRDCNLSVDGVVGKETWGVL 276 >gi|119775164|ref|YP_927904.1| membrane-bound lytic transglycolase-like protein [Shewanella amazonensis SB2B] gi|119767664|gb|ABM00235.1| membrane-bound lytic transglycolase-related protein [Shewanella amazonensis SB2B] Length = 401 Score = 44.4 bits (104), Expect = 0.033, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 G P PL + ++ ++++LI G D + + +A++ FQ R+ Sbjct: 319 NGAKPLKVAPPLQPRRTRDGLKAMQQKLIELGY-DIGAADGII-GSKTSAAIRDFQRRNK 376 Query: 151 LDPSGMVDSSTLEAM 165 L P G D +TL A+ Sbjct: 377 LVPDGFADDATLNAL 391 >gi|293412742|ref|ZP_06655410.1| conserved hypothetical protein [Escherichia coli B354] gi|291468389|gb|EFF10882.1| conserved hypothetical protein [Escherichia coli B354] Length = 192 Score = 44.4 bits (104), Expect = 0.033, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 95 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 152 Query: 152 DPSGMVDSSTLEAM 165 G+V STL + Sbjct: 153 KTDGVVGFSTLVHL 166 >gi|317128557|ref|YP_004094839.1| spore cortex-lytic enzyme [Bacillus cellulosilyticus DSM 2522] gi|315473505|gb|ADU30108.1| spore cortex-lytic enzyme [Bacillus cellulosilyticus DSM 2522] Length = 372 Score = 44.4 bits (104), Expect = 0.033, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G + V L+ RL G + + F AV+ +Q G++ +G+V +T Sbjct: 39 IQRGATGDDVVELQARLQYIGFYEG--DIDGVFGWGTYWAVRNYQQEFGMEVTGLVGENT 96 Query: 162 LEAMNVPVD 170 + D Sbjct: 97 KAMLERSTD 105 >gi|254225886|ref|ZP_04919489.1| vgrG protein [Vibrio cholerae V51] gi|125621613|gb|EAZ49944.1| vgrG protein [Vibrio cholerae V51] Length = 1017 Score = 44.4 bits (104), Expect = 0.033, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 30/147 (20%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 I + L ++ S ++ ND + + SD+ S E ++ + Y+ Sbjct: 671 IDVASLPTMMPSSANNTANDEPVAEEKTPERILKSDLLKPSDELEKLAKRQASAYRQ--- 727 Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH- 149 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 728 --------------GNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQ 773 Query: 150 -----------GLDPSGMVDSSTLEAM 165 G G+V TL A+ Sbjct: 774 PSHQTHPSYSIG-AVDGIVGKGTLLAL 799 >gi|220910238|ref|YP_002485549.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 7425] gi|219866849|gb|ACL47188.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 7425] Length = 217 Score = 44.4 bits (104), Expect = 0.034, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 56/177 (31%), Gaps = 52/177 (29%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 Q + +++++ + + V +GR +TP+ ++ +++ NP W P Sbjct: 84 PQVVAPLRLVISLSRRRVTVFQGSTALKSYPVAIGRPGWETPVGKFQVKQLIRNPTWKHP 143 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 + D++ KG N Sbjct: 144 ---FKGDII--------------------KGGH-----------------------PDNP 157 Query: 308 MASTKIEF--YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPT 362 + I F +N MH TP P +V R + GCVR+ N D+ K Sbjct: 158 LGKFWIGFWTDGKNWVGMHGTPNP---ESVGRAASHGCVRMYN-KDIAELFAKVQLG 210 >gi|147671421|ref|YP_001214855.1| vgrG protein [Vibrio cholerae O395] gi|262167069|ref|ZP_06034785.1| VgrG protein [Vibrio cholerae RC27] gi|146313804|gb|ABQ18344.1| vgrG protein [Vibrio cholerae O395] gi|227014751|gb|ACP10960.1| vgrG protein [Vibrio cholerae O395] gi|262024524|gb|EEY43209.1| VgrG protein [Vibrio cholerae RC27] Length = 1017 Score = 44.4 bits (104), Expect = 0.034, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 30/147 (20%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 I + L ++ S ++ ND + + SD+ S E ++ + Y+ Sbjct: 671 IDVASLPTMMPSSANNTANDEPVAEEKTPERILKSDLLKPSDELEKLAKRQASAYRQ--- 727 Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH- 149 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 728 --------------GNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQ 773 Query: 150 -----------GLDPSGMVDSSTLEAM 165 G G+V TL A+ Sbjct: 774 PSHQTHPSYSIG-AVDGIVGKGTLLAL 799 >gi|15600894|ref|NP_232524.1| vgrG protein [Vibrio cholerae O1 biovar eltor str. N16961] gi|121586876|ref|ZP_01676657.1| vgrG protein [Vibrio cholerae 2740-80] gi|153817727|ref|ZP_01970394.1| vgrG protein [Vibrio cholerae NCTC 8457] gi|153821639|ref|ZP_01974306.1| vgrG protein [Vibrio cholerae B33] gi|227811749|ref|YP_002811759.1| vgrG protein [Vibrio cholerae M66-2] gi|229506709|ref|ZP_04396218.1| VgrG protein [Vibrio cholerae BX 330286] gi|229510497|ref|ZP_04399977.1| VgrG protein [Vibrio cholerae B33] gi|229517372|ref|ZP_04406817.1| VgrG protein [Vibrio cholerae RC9] gi|229605182|ref|YP_002875886.1| VgrG protein [Vibrio cholerae MJ-1236] gi|254850390|ref|ZP_05239740.1| vgrG protein [Vibrio cholerae MO10] gi|255746058|ref|ZP_05420005.1| VgrG protein [Vibrio cholera CIRS 101] gi|262162104|ref|ZP_06031119.1| VgrG protein [Vibrio cholerae INDRE 91/1] gi|298499985|ref|ZP_07009791.1| vgrG protein [Vibrio cholerae MAK 757] gi|9657510|gb|AAF96037.1| vgrG protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548919|gb|EAX58960.1| vgrG protein [Vibrio cholerae 2740-80] gi|126511769|gb|EAZ74363.1| vgrG protein [Vibrio cholerae NCTC 8457] gi|126520836|gb|EAZ78059.1| vgrG protein [Vibrio cholerae B33] gi|227010891|gb|ACP07102.1| vgrG protein [Vibrio cholerae M66-2] gi|229345408|gb|EEO10381.1| VgrG protein [Vibrio cholerae RC9] gi|229352942|gb|EEO17882.1| VgrG protein [Vibrio cholerae B33] gi|229357060|gb|EEO21978.1| VgrG protein [Vibrio cholerae BX 330286] gi|229371668|gb|ACQ62090.1| VgrG protein [Vibrio cholerae MJ-1236] gi|254846095|gb|EET24509.1| vgrG protein [Vibrio cholerae MO10] gi|255735812|gb|EET91210.1| VgrG protein [Vibrio cholera CIRS 101] gi|262028179|gb|EEY46837.1| VgrG protein [Vibrio cholerae INDRE 91/1] gi|297541966|gb|EFH78017.1| vgrG protein [Vibrio cholerae MAK 757] Length = 1017 Score = 44.4 bits (104), Expect = 0.034, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 30/147 (20%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 I + L ++ S ++ ND + + SD+ S E ++ + Y+ Sbjct: 671 IDVASLPTMMPSSANNTANDEPVAEEKTPERILKSDLLKPSDELEKLAKRQASAYRQ--- 727 Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH- 149 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 728 --------------GNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQ 773 Query: 150 -----------GLDPSGMVDSSTLEAM 165 G G+V TL A+ Sbjct: 774 PSHQTHPSYSIG-AVDGIVGKGTLLAL 799 >gi|220920071|ref|YP_002495372.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] gi|219944677|gb|ACL55069.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium nodulans ORS 2060] Length = 339 Score = 44.4 bits (104), Expect = 0.034, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 46/179 (25%) Query: 187 LEQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L ++ ++ ++V+ A + A +G + +G ++ P ++ I+F+P Sbjct: 198 LPEEPKVQRIVVDKEALQVRAYGGDGALLAVYPASIGSEEKPAPQGTFKVKGIVFDP--- 254 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 D Y + K F R PG Sbjct: 255 ----------------DYTYDPKYGFAGVHAK----------------HKFTIR--PGPN 280 Query: 306 NAMASTKIEFY-SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 N + I+ H TP+P + + E+ GC+R+ N DL ++K Sbjct: 281 NPVGLVWIDLSAESYGI--HGTPDP---EKIGKTESHGCIRLTNWDARDLARHVVKGAT 334 >gi|298293414|ref|YP_003695353.1| peptidoglycan-binding protein [Starkeya novella DSM 506] gi|296929925|gb|ADH90734.1| Peptidoglycan-binding domain 1 protein [Starkeya novella DSM 506] Length = 263 Score = 44.4 bits (104), Expect = 0.035, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 8/64 (12%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG------LDPSGMVDSST 161 S V RL+ RL L + F E AV+LFQ R+ ++ G V T Sbjct: 23 SPEVARLQARLNDV--LGSALIEDGDFGVATEDAVRLFQARYTDPTGGEIEVDGRVGPET 80 Query: 162 LEAM 165 A+ Sbjct: 81 WAAL 84 >gi|281180358|dbj|BAI56688.1| general secretion pathway protein A [Escherichia coli SE15] Length = 489 Score = 44.4 bits (104), Expect = 0.035, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTESSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTLEAM 165 G+V STL + Sbjct: 450 KTDGVVGFSTLVHL 463 >gi|226314867|ref|YP_002774763.1| carboxyl-terminal processing protease precursor [Brevibacillus brevis NBRC 100599] gi|226097817|dbj|BAH46259.1| putative carboxyl-terminal processing protease precursor [Brevibacillus brevis NBRC 100599] Length = 466 Score = 44.4 bits (104), Expect = 0.035, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Query: 100 RPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L + V+ L +LI+ G +L P + FD E A+K FQ L+ +G VD Sbjct: 376 KVLQRDMAGTDVKNL--QLILKGLNLSPGREDG-YFDEKTEEAIKQFQTSSKLEVTGKVD 432 Query: 159 SSTLEAM 165 + T ++ Sbjct: 433 AKTRSSL 439 >gi|229018065|ref|ZP_04174940.1| Spore cortex-lytic enzyme [Bacillus cereus AH1273] gi|229024246|ref|ZP_04180705.1| Spore cortex-lytic enzyme [Bacillus cereus AH1272] gi|228737021|gb|EEL87557.1| Spore cortex-lytic enzyme [Bacillus cereus AH1272] gi|228743156|gb|EEL93281.1| Spore cortex-lytic enzyme [Bacillus cereus AH1273] Length = 259 Score = 44.4 bits (104), Expect = 0.035, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQKGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQQKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|225452580|ref|XP_002280833.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|147807820|emb|CAN73129.1| hypothetical protein VITISV_030257 [Vitis vinifera] Length = 319 Score = 44.4 bits (104), Expect = 0.035, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY------VESAVKLFQMRHGLDPSGM 156 H G+ +Q+L++ L G L S+ + +ESA+K +Q + L+ +G Sbjct: 50 HKGDEVNGIQKLKKYLEQFGYLSYSRSKNQTHADDDDFDDLLESAIKTYQANYHLEATGD 109 Query: 157 VDSSTLEAMNVP 168 +DS T+ M P Sbjct: 110 LDSETVSEMVKP 121 >gi|328555228|gb|AEB25720.1| carboxy-terminal processing serine protease, cleaves SpoIVFA, this results in processing of pro-SigK [Bacillus amyloliquefaciens TA208] gi|328913589|gb|AEB65185.1| carboxy-terminal processing serine protease, cleaves SpoIVFA, this results in processing of pro-SigK [Bacillus amyloliquefaciens LL3] Length = 466 Score = 44.4 bits (104), Expect = 0.036, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 23/106 (21%) Query: 82 IAFYQDILSRGGW-------PELPI--------------RPLHLGNSSVSVQRLRERLII 120 + Y+ + +G W P + + +PL +S V+ + L Sbjct: 337 LTLYKWLTPKGNWIHKKGITPTIAVSQPDYFAAGPLQLKQPLQPDMNSADVKHAQILLKG 396 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 G DP + F ++ AV FQ R+ LD + ++D T E MN Sbjct: 397 LGF-DPGRADG-YFSKTMKKAVLAFQDRNKLDKTAVIDKKTAEKMN 440 >gi|308175255|ref|YP_003921960.1| carboxy-terminal processing serine protease [Bacillus amyloliquefaciens DSM 7] gi|307608119|emb|CBI44490.1| carboxy-terminal processing serine protease, cleaves SpoIVFA, this results in processing of pro-SigK [Bacillus amyloliquefaciens DSM 7] Length = 466 Score = 44.4 bits (104), Expect = 0.036, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 23/106 (21%) Query: 82 IAFYQDILSRGGW-------PELPI--------------RPLHLGNSSVSVQRLRERLII 120 + Y+ + +G W P + + +PL +S V+ + L Sbjct: 337 LTLYKWLTPKGNWIHKKGITPTIAVSQPDYFAAGPLQLKQPLQPDMNSADVKHAQILLKG 396 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 G DP + F ++ AV FQ R+ LD + ++D T E MN Sbjct: 397 LGF-DPGRADG-YFSKTMKKAVLAFQDRNKLDKTAVIDKKTAEKMN 440 >gi|117625600|ref|YP_858923.1| putative general secretion pathway protein A [Escherichia coli APEC O1] gi|115514724|gb|ABJ02799.1| putative general secretion pathway protein A [Escherichia coli APEC O1] Length = 191 Score = 44.4 bits (104), Expect = 0.036, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 18/42 (42%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L S S + + +K FQ H L G+V STL + Sbjct: 124 LHISTESSAEWRPLLVEKIKQFQKSHHLKTDGVVGFSTLVHL 165 >gi|2632002|emb|CAA05561.1| N-Acetylmuramoyl-L-alanine amidase [Bacillus subtilis] Length = 103 Score = 44.4 bits (104), Expect = 0.036, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%) Query: 107 SSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 S V +++ L + G+ + AV FQ +GL G+ +T Sbjct: 36 SGEHVFQVQRALAALYFYPDKGAVNNGIDGVYGPKTADAVARFQSVNGLTADGIYGPAT 94 >gi|295401143|ref|ZP_06811116.1| carboxyl-terminal protease [Geobacillus thermoglucosidasius C56-YS93] gi|294976736|gb|EFG52341.1| carboxyl-terminal protease [Geobacillus thermoglucosidasius C56-YS93] Length = 480 Score = 44.4 bits (104), Expect = 0.036, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 29/126 (23%) Query: 82 IAFYQDILSRGGW-------PELPIR--------PLHLG------NSSVSVQRLRERLII 120 + Y+ + G W P++ ++ PLH+ ++ V+ ++ L Sbjct: 352 LTLYKWLTPDGHWIHKKGVKPDVEVKQPDYFHASPLHIEKALSFDMNNEQVKNAQQMLKG 411 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR------ 174 G DP + F E+AVK FQ + L P+G +D +T + + V IR Sbjct: 412 IGF-DPGRTDG-YFSKETEAAVKAFQKANKLPPTGKIDKNTADVLQAKVMDAIRNEDNDV 469 Query: 175 QLQVNL 180 QL+ + Sbjct: 470 QLKTAM 475 >gi|306816334|ref|ZP_07450472.1| general secretion pathway protein A [Escherichia coli NC101] gi|305850730|gb|EFM51187.1| general secretion pathway protein A [Escherichia coli NC101] Length = 489 Score = 44.4 bits (104), Expect = 0.036, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTESSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTLEAM 165 G+V STL + Sbjct: 450 KTDGVVGFSTLVHL 463 >gi|209525179|ref|ZP_03273722.1| ErfK/YbiS/YcfS/YnhG family protein [Arthrospira maxima CS-328] gi|209494364|gb|EDZ94676.1| ErfK/YbiS/YcfS/YnhG family protein [Arthrospira maxima CS-328] Length = 178 Score = 44.4 bits (104), Expect = 0.036, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 48/170 (28%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV 245 L+ +++ + + + N +V + +GR +TPI H ++ +++ +P W Sbjct: 44 WLQYSPSQLELVIRLGERRVYVMNNARVVTSYPIAIGRNGWETPIGHYQVIQMIEDPTWE 103 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 P + D++ R +P L + I + N+ Sbjct: 104 HP---LNGDIIPPGRDNP--LGSHWIGFWT----------------DGTNY--------- 133 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 H TP + GCVR+ N L ++ Sbjct: 134 ---------------IGFHGTPNEETVGQ---AVSHGCVRMFNRDVLALF 165 >gi|315298621|gb|EFU57876.1| conserved hypothetical protein [Escherichia coli MS 16-3] Length = 489 Score = 44.4 bits (104), Expect = 0.037, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTESSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTLEAM 165 G+V STL + Sbjct: 450 KTDGVVGFSTLVHL 463 >gi|110643562|ref|YP_671292.1| general secretion pathway protein A [Escherichia coli 536] gi|191171523|ref|ZP_03033071.1| putative general secretory pathway protein A [Escherichia coli F11] gi|300974002|ref|ZP_07172409.1| hypothetical protein HMPREF9553_00369 [Escherichia coli MS 200-1] gi|110345154|gb|ABG71391.1| probable general secretion pathway protein A [Escherichia coli 536] gi|190908150|gb|EDV67741.1| putative general secretory pathway protein A [Escherichia coli F11] gi|222035032|emb|CAP77775.1| general secretion pathway protein A [Escherichia coli LF82] gi|300309012|gb|EFJ63532.1| hypothetical protein HMPREF9553_00369 [Escherichia coli MS 200-1] gi|312947874|gb|ADR28701.1| general secretion pathway protein A [Escherichia coli O83:H1 str. NRG 857C] gi|324014939|gb|EGB84158.1| hypothetical protein HMPREF9533_01001 [Escherichia coli MS 60-1] Length = 489 Score = 44.4 bits (104), Expect = 0.037, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTESSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTLEAM 165 G+V STL + Sbjct: 450 KTDGVVGFSTLVHL 463 >gi|85859357|ref|YP_461559.1| putative peptidoglycan binding protein [Syntrophus aciditrophicus SB] gi|85722448|gb|ABC77391.1| putative peptidoglycan binding protein [Syntrophus aciditrophicus SB] Length = 300 Score = 44.4 bits (104), Expect = 0.037, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 1/60 (1%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + Q L+ L G DP + F AV FQ G+ G +T A+ Sbjct: 234 DKGDKTQWLQNALNQLG-ADPKLTVDGRFGPATRRAVMKFQTTAGIPADGKAGPATEAAI 292 >gi|15218963|ref|NP_176205.1| matrixin family protein [Arabidopsis thaliana] gi|4249376|gb|AAD14473.1| Strong similarity to gi|2829864 F3I6.6 zinc metalloproteinase homolog from Arabidopsis thaliana BAC gb|AC002396. EST gb|Z26412 comes from this gene gi|51971615|dbj|BAD44472.1| predicted GPI-anchored protein [Arabidopsis thaliana] gi|94442451|gb|ABF19013.1| At1g59970 [Arabidopsis thaliana] gi|332195524|gb|AEE33645.1| matrix metalloprotease domain-containing protein [Arabidopsis thaliana] Length = 360 Score = 44.4 bits (104), Expect = 0.037, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Query: 89 LSRGGWPELP-IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 ++ W + H+G + + +L++ G + + + FD ++SA+ +Q Sbjct: 37 ATQNAWETFSKLAGCHIGENINGLSKLKQYFRRFGYITTTGNCTDDFDDVLQSAINTYQK 96 Query: 148 RHGLDPSGMVDSSTLEAMNVP 168 L +G +DSSTL + P Sbjct: 97 NFNLKVTGKLDSSTLRQIVKP 117 >gi|323939255|gb|EGB35467.1| gspA protein [Escherichia coli E482] Length = 489 Score = 44.4 bits (104), Expect = 0.037, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTLEAM 165 G+V STL + Sbjct: 450 KTDGVVGFSTLVHL 463 >gi|223986583|ref|ZP_03636578.1| hypothetical protein HOLDEFILI_03900 [Holdemania filiformis DSM 12042] gi|223961442|gb|EEF65959.1| hypothetical protein HOLDEFILI_03900 [Holdemania filiformis DSM 12042] Length = 159 Score = 44.4 bits (104), Expect = 0.037, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R L +GN + VQ+ ++ L +P + F + AV+ FQ +GL+ G++ Sbjct: 87 STRTLRVGNIGLGVQKFQQYLNELIAPNPRLVVDGNFGQNTKRAVETFQALNGLNVDGVI 146 Query: 158 DSSTL 162 ++T Sbjct: 147 GNNTW 151 >gi|331659613|ref|ZP_08360551.1| putative general secretion pathway protein A [Escherichia coli TA206] gi|324009014|gb|EGB78233.1| hypothetical protein HMPREF9532_01265 [Escherichia coli MS 57-2] gi|331052828|gb|EGI24861.1| putative general secretion pathway protein A [Escherichia coli TA206] Length = 489 Score = 44.4 bits (104), Expect = 0.037, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTESSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTLEAM 165 G+V STL + Sbjct: 450 KTDGVVGFSTLVHL 463 >gi|331649120|ref|ZP_08350206.1| putative general secretion pathway protein A [Escherichia coli M605] gi|330909365|gb|EGH37879.1| general secretion pathway protein A [Escherichia coli AA86] gi|331041618|gb|EGI13762.1| putative general secretion pathway protein A [Escherichia coli M605] Length = 489 Score = 44.4 bits (104), Expect = 0.037, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTESSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTLEAM 165 G+V STL + Sbjct: 450 KTDGVVGFSTLVHL 463 >gi|326803031|ref|YP_004320849.1| hypothetical protein HMPREF9243_0507 [Aerococcus urinae ACS-120-V-Col10a] gi|326651168|gb|AEA01351.1| conserved hypothetical protein [Aerococcus urinae ACS-120-V-Col10a] Length = 471 Score = 44.4 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 21/41 (51%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + G Y+ V+IP L ENG++ L + VI G+ T Sbjct: 334 DNFFGDTYIEVDIPNQKLFLYENGQLSLETDVITGQDKSPT 374 >gi|224146279|ref|XP_002325947.1| predicted protein [Populus trichocarpa] gi|222862822|gb|EEF00329.1| predicted protein [Populus trichocarpa] Length = 308 Score = 44.4 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPS-KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + G + + L++ L G S FD ++E A+K +Q L+ +G +DSS Sbjct: 46 IQKGQTVEGLIELKQYLKKFGYYPSDITLTSSDFDDHLELALKTYQEYFHLNVTGNLDSS 105 Query: 161 TLEAMNVP 168 T++ M +P Sbjct: 106 TIQQMMIP 113 >gi|225020851|ref|ZP_03710043.1| hypothetical protein CORMATOL_00859 [Corynebacterium matruchotii ATCC 33806] gi|224946333|gb|EEG27542.1| hypothetical protein CORMATOL_00859 [Corynebacterium matruchotii ATCC 33806] Length = 369 Score = 44.4 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 7/81 (8%) Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR----QL 176 G S + F + A+ +QM +GL+ G+ +T+ ++N + RI Q Sbjct: 90 LGFY--SDRIDGHFGEHTYRALLKYQMNYGLNMDGICGPNTIRSLNR-LGRRITGGSPQK 146 Query: 177 QVNLMRIKKLLEQKMGLRYVL 197 R++ + G R V+ Sbjct: 147 LRERERMRAAGPRLTGKRVVI 167 Score = 39.8 bits (92), Expect = 0.76, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 19/37 (51%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 FD +E+A++ FQ G+ SG ++ TL + Sbjct: 19 NADTLFDDELEAALRGFQQARGIIASGEINEMTLRVL 55 >gi|257888642|ref|ZP_05668295.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus faecium 1,141,733] gi|257897403|ref|ZP_05677056.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus faecium Com12] gi|257824696|gb|EEV51628.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus faecium 1,141,733] gi|257833968|gb|EEV60389.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus faecium Com12] Length = 425 Score = 44.4 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 Y+ V++ + ++GKV L + ++ G+ TP Sbjct: 300 EDTYIEVDLENQHMWYYKDGKVALETDIVSGKPSTPTP 337 >gi|302874180|ref|YP_003842813.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium cellulovorans 743B] gi|307689560|ref|ZP_07632006.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium cellulovorans 743B] gi|302577037|gb|ADL51049.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium cellulovorans 743B] Length = 454 Score = 44.4 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 21/137 (15%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWV 245 +G YV VN A + +NG + + + V+ G D TP+ ++ + Sbjct: 328 SNDIGNTYVEVNKAAQHMWFYKNGSLVVDTDVVTGTTDGVHDTPV---GVHYV------- 377 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPN-FIFRQDPGK 304 + K+ + + P Y + M V + + W S N + + G Sbjct: 378 -----LYKES-PAILRGPGYAAPVSYWMPLTWDG-VGIHDATWRSAFGGNIYTYDGSHGC 430 Query: 305 IN-AMASTKIEFYSRNN 320 IN + + F + + Sbjct: 431 INTPYGAVQTIFENIDA 447 >gi|254038484|ref|ZP_04872540.1| general secretory pathway component [Escherichia sp. 1_1_43] gi|226838990|gb|EEH71013.1| general secretory pathway component [Escherichia sp. 1_1_43] gi|315617000|gb|EFU97612.1| putative peptidoglycan binding domain protein [Escherichia coli 3431] Length = 478 Score = 44.4 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 381 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 438 Query: 152 DPSGMVDSSTLEAM 165 G+V STL + Sbjct: 439 KTDGVVGFSTLVHL 452 >gi|224825429|ref|ZP_03698534.1| ErfK/YbiS/YcfS/YnhG family protein [Lutiella nitroferrum 2002] gi|224602350|gb|EEG08528.1| ErfK/YbiS/YcfS/YnhG family protein [Lutiella nitroferrum 2002] Length = 348 Score = 44.4 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 59/189 (31%), Gaps = 57/189 (30%) Query: 196 VLVNIPAASLEAV------ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 V++NIP L + + + + + R TP+ +RI +P W +P+S Sbjct: 97 VVLNIPQRRLYYFPATTKGQPPQQVITYPISIAREGWSTPLGATRIKAKFKDPAWFVPKS 156 Query: 250 IIQKDMMALLRQD----PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 I + + LR+D P+Y PG Sbjct: 157 I-RDE---HLREDGVELPEYF----------------------------------PPGPD 178 Query: 306 NAMASTKIE--FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTW 363 N M ++ F ++H T P + GC+ + D + Sbjct: 179 NPMGMLAMQTGFP---GIFIHATNRPWGVGLRT---SHGCLHL-YPEDAAQIFPQMKVGT 231 Query: 364 SRYHIEEVV 372 I+E V Sbjct: 232 PVRVIDEPV 240 >gi|121727012|ref|ZP_01680208.1| vgrG protein [Vibrio cholerae V52] gi|121630646|gb|EAX63035.1| vgrG protein [Vibrio cholerae V52] Length = 1017 Score = 44.4 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 30/147 (20%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 I + L ++ S ++ ND + + SD+ S E ++ + Y+ Sbjct: 671 IDVASLPTMMPSSANNTANDEPVAEEKTPERILKSDLLKPSDELEKLAKRQASAYRQ--- 727 Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH- 149 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 728 --------------GNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQ 773 Query: 150 -----------GLDPSGMVDSSTLEAM 165 G G+V TL A+ Sbjct: 774 PSHQTHPSYSIG-AVDGIVGKGTLLAL 799 >gi|148653993|ref|YP_001281086.1| ErfK/YbiS/YcfS/YnhG family protein [Psychrobacter sp. PRwf-1] gi|148573077|gb|ABQ95136.1| ErfK/YbiS/YcfS/YnhG family protein [Psychrobacter sp. PRwf-1] Length = 399 Score = 44.4 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 87/246 (35%), Gaps = 41/246 (16%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLE 188 + F V A+K+FQ + + P+G +D T + L + + VN L Sbjct: 158 AVDGRFGENVIKALKVFQEKQAMKPTGQLDPETWAKLTEDPALMSQPVLVN----YTLTP 213 Query: 189 QKM-------GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 + + G ++ V A + G + R D L + +++N Sbjct: 214 EDVTLIKNPKGQQFTTVTEAVAEKFHMSQG-LLWRLN-----PDTP---LEAGNTIVVYN 264 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMI---------------DEKGKEVFVEEV 286 PY P ++A+ ++ Y ++ ++ D K + + Sbjct: 265 PY--QPNEQEVHRVVAVKAKNLLYAYNDKDELVASYPTTMGSVYKPSPDGDYKVLSRIKD 322 Query: 287 DWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 + + N PG N + I ++ + +H +P P + R +SGCVR+ Sbjct: 323 PSYNKDFKNPNTVLPPGPNNPVGRVWIGI-NKRSYGIHGSPNP---EKISRQNSSGCVRL 378 Query: 347 RNIIDL 352 N L Sbjct: 379 TNWDAL 384 >gi|331674824|ref|ZP_08375581.1| general secretory pathway component, cryptic [Escherichia coli TA280] gi|331067733|gb|EGI39131.1| general secretory pathway component, cryptic [Escherichia coli TA280] Length = 489 Score = 44.4 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 4/74 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + ++ +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPFLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTLEAM 165 G+V STL + Sbjct: 450 KTDGVVGFSTLVHL 463 >gi|253771853|ref|YP_003034684.1| peptidoglycan-binding protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163251|ref|YP_003046359.1| general secretory pathway component, cryptic [Escherichia coli B str. REL606] gi|242378850|emb|CAQ33642.1| gspA [Escherichia coli BL21(DE3)] gi|253322897|gb|ACT27499.1| Peptidoglycan-binding domain 1 protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975152|gb|ACT40823.1| general secretory pathway component, cryptic [Escherichia coli B str. REL606] gi|253979308|gb|ACT44978.1| general secretory pathway component, cryptic [Escherichia coli BL21(DE3)] Length = 489 Score = 44.4 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTLEAM 165 G+V STL + Sbjct: 450 KTDGVVGFSTLVHL 463 >gi|227552673|ref|ZP_03982722.1| ErfK/YbiS/YcfS/YnhG [Enterococcus faecium TX1330] gi|293378838|ref|ZP_06624993.1| ErfK/YbiS/YcfS/YnhG [Enterococcus faecium PC4.1] gi|227178202|gb|EEI59174.1| ErfK/YbiS/YcfS/YnhG [Enterococcus faecium TX1330] gi|292642379|gb|EFF60534.1| ErfK/YbiS/YcfS/YnhG [Enterococcus faecium PC4.1] Length = 465 Score = 44.4 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 Y+ V++ + ++GKV L + ++ G+ TP Sbjct: 340 EDTYIEVDLENQHMWYYKDGKVALETDIVSGKPSTPTP 377 >gi|168044978|ref|XP_001774956.1| predicted protein [Physcomitrella patens subsp. patens] gi|162673703|gb|EDQ60222.1| predicted protein [Physcomitrella patens subsp. patens] Length = 294 Score = 44.4 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGL------SVAFDAYVESAVKLFQMRHGLDPSGM 156 LG + L+ L+ G + + S FD+ + A++ +Q GL +G Sbjct: 11 KLGEVRAGMANLKMYLLQFGYISSADAPPAGSSFSEEFDSITQKAIQNYQRSFGLPVTGN 70 Query: 157 VDSSTLEAMNVPVDLRIRQL 176 +D +TL M +P R + Sbjct: 71 LDLATLTQMIIPRCGREDVI 90 >gi|293571068|ref|ZP_06682109.1| ErfK/YbiS/YcfS/YnhG family [Enterococcus faecium E980] gi|291608851|gb|EFF38132.1| ErfK/YbiS/YcfS/YnhG family [Enterococcus faecium E980] Length = 465 Score = 44.4 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 Y+ V++ + ++GKV L + ++ G+ TP Sbjct: 340 EDTYIEVDLENQHMWYYKDGKVALETDIVSGKPSTPTP 377 >gi|257899963|ref|ZP_05679616.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus faecium Com15] gi|257837875|gb|EEV62949.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus faecium Com15] Length = 465 Score = 44.4 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 Y+ V++ + ++GKV L + ++ G+ TP Sbjct: 340 EDTYIEVDLENQHMWYYKDGKVALETDIVSGKPSTPTP 377 >gi|157162797|ref|YP_001460115.1| putative general secretory pathway protein A [Escherichia coli HS] gi|170018441|ref|YP_001723395.1| peptidoglycan binding domain-containing protein [Escherichia coli ATCC 8739] gi|157068477|gb|ABV07732.1| putative general secretory pathway protein A [Escherichia coli HS] gi|169753369|gb|ACA76068.1| Peptidoglycan-binding domain 1 protein [Escherichia coli ATCC 8739] Length = 489 Score = 44.4 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTLEAM 165 G+V STL + Sbjct: 450 KTDGVVGFSTLVHL 463 >gi|312898890|ref|ZP_07758278.1| NlpC/P60 family protein [Megasphaera micronuciformis F0359] gi|310620052|gb|EFQ03624.1| NlpC/P60 family protein [Megasphaera micronuciformis F0359] Length = 249 Score = 44.1 bits (103), Expect = 0.040, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L + +G+ V +++ L+ G G+ F AV+ FQ GL SG Sbjct: 19 TLSVGAYSVGSQGSDVLLIQQNLVKRGY---KIGMDGIFGNDTRRAVERFQADKGLTISG 75 Query: 156 MVDSSTLEAM 165 VD+ T + + Sbjct: 76 SVDAKTFKTL 85 >gi|282555158|gb|ADA82676.1| L,D-transpeptidase [endosymbiont of Polyrhachis turneri] Length = 311 Score = 44.1 bits (103), Expect = 0.040, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 51/168 (30%), Gaps = 56/168 (33%) Query: 189 QKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILH--SRINRIMFNPYWV 245 +++N L +N + + +G ++ TP + + I + NP W Sbjct: 94 PDTPHEGIIINSAEMRLFFYPKNNNTVIIFPIGIGEIEHHTP-FNWITSIQKKKHNPTW- 151 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 IP I+ + +A ++ + V PG Sbjct: 152 IPTQNIKNEYIAR--------------------GDIPPKIV--------------PPGPQ 177 Query: 306 NAMASTKIEFYSRNNTY------MHDTPEPILFNNVVRFETSGCVRVR 347 N M + Y +H T F +R GCVR++ Sbjct: 178 NPMG--------SHALYIGKLYAIHGTNSN--FGIGLRIX-HGCVRLK 214 >gi|224097706|ref|XP_002311048.1| predicted protein [Populus trichocarpa] gi|222850868|gb|EEE88415.1| predicted protein [Populus trichocarpa] Length = 259 Score = 44.1 bits (103), Expect = 0.040, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%) Query: 107 SSVSVQRLRERLIISGDLD--------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 S + L+ L G L + FD +ESA+K +Q H L+ +G +D Sbjct: 46 SVKGLHELKRYLEKFGYLKYGHQGKKGHNHANDDEFDDLLESAIKAYQQNHHLNVTGSLD 105 Query: 159 SSTLEAM 165 +ST+ M Sbjct: 106 NSTVHEM 112 >gi|311893468|dbj|BAJ25876.1| hypothetical protein KSE_00230t [Kitasatospora setae KM-6054] gi|311900994|dbj|BAJ33402.1| hypothetical protein KSE_76510t [Kitasatospora setae KM-6054] Length = 267 Score = 44.1 bits (103), Expect = 0.040, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 12/72 (16%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV---------DSS 160 V+ ++ RL+ G + ++ A AV+ FQ HGL P+G+V ++ Sbjct: 59 EVKEIQRRLVAHGY---PVTVDGSYGARTLYAVQDFQRDHGLAPTGLVHDFAPTGFDTNT 115 Query: 161 TLEAMNVPVDLR 172 T A+ P + Sbjct: 116 TFFALLAPPAKK 127 >gi|16131202|ref|NP_417782.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. MG1655] gi|89110687|ref|AP_004467.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. W3110] gi|170082842|ref|YP_001732162.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. DH10B] gi|188496286|ref|ZP_03003556.1| putative general secretory pathway protein A [Escherichia coli 53638] gi|194439974|ref|ZP_03072033.1| putative general secretory pathway protein A [Escherichia coli 101-1] gi|238902414|ref|YP_002928210.1| general secretory pathway component, cryptic [Escherichia coli BW2952] gi|256025949|ref|ZP_05439814.1| general secretory pathway component, cryptic [Escherichia sp. 4_1_40B] gi|300903571|ref|ZP_07121493.1| hypothetical protein HMPREF9536_01700 [Escherichia coli MS 84-1] gi|300918296|ref|ZP_07134900.1| conserved hypothetical protein [Escherichia coli MS 115-1] gi|300946545|ref|ZP_07160810.1| conserved hypothetical protein [Escherichia coli MS 116-1] gi|300954738|ref|ZP_07167171.1| hypothetical protein HMPREF9547_00663 [Escherichia coli MS 175-1] gi|301021127|ref|ZP_07185167.1| conserved hypothetical protein [Escherichia coli MS 196-1] gi|301305532|ref|ZP_07211624.1| hypothetical protein HMPREF9347_04153 [Escherichia coli MS 124-1] gi|301643857|ref|ZP_07243888.1| conserved hypothetical protein [Escherichia coli MS 146-1] gi|307140006|ref|ZP_07499362.1| general secretory pathway component, cryptic [Escherichia coli H736] gi|331644019|ref|ZP_08345148.1| general secretory pathway component, cryptic [Escherichia coli H736] gi|1170044|sp|P45756|GSPA_ECOLI RecName: Full=Probable general secretion pathway protein A gi|606257|gb|AAA58120.1| ORF_f489 [Escherichia coli str. K-12 substr. MG1655] gi|1789720|gb|AAC76348.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. MG1655] gi|85676718|dbj|BAE77968.1| general secretory pathway component, cryptic [Escherichia coli str. K12 substr. W3110] gi|169890677|gb|ACB04384.1| general secretory pathway component, cryptic [Escherichia coli str. K-12 substr. DH10B] gi|188491485|gb|EDU66588.1| putative general secretory pathway protein A [Escherichia coli 53638] gi|194421082|gb|EDX37110.1| putative general secretory pathway protein A [Escherichia coli 101-1] gi|238861289|gb|ACR63287.1| general secretory pathway component, cryptic [Escherichia coli BW2952] gi|260447658|gb|ACX38080.1| Peptidoglycan-binding domain 1 protein [Escherichia coli DH1] gi|299881657|gb|EFI89868.1| conserved hypothetical protein [Escherichia coli MS 196-1] gi|300318289|gb|EFJ68073.1| hypothetical protein HMPREF9547_00663 [Escherichia coli MS 175-1] gi|300404444|gb|EFJ87982.1| hypothetical protein HMPREF9536_01700 [Escherichia coli MS 84-1] gi|300414557|gb|EFJ97867.1| conserved hypothetical protein [Escherichia coli MS 115-1] gi|300453791|gb|EFK17411.1| conserved hypothetical protein [Escherichia coli MS 116-1] gi|300839227|gb|EFK66987.1| hypothetical protein HMPREF9347_04153 [Escherichia coli MS 124-1] gi|301077760|gb|EFK92566.1| conserved hypothetical protein [Escherichia coli MS 146-1] gi|309703735|emb|CBJ03076.1| general secretory pathway component, GspA [Escherichia coli ETEC H10407] gi|315137898|dbj|BAJ45057.1| general secretory pathway component, cryptic [Escherichia coli DH1] gi|315255906|gb|EFU35874.1| general secretory pathway component, cryptic [Escherichia coli MS 85-1] gi|323959526|gb|EGB55179.1| gspA protein [Escherichia coli H489] gi|323970127|gb|EGB65401.1| gspA protein [Escherichia coli TA007] gi|331036313|gb|EGI08539.1| general secretory pathway component, cryptic [Escherichia coli H736] Length = 489 Score = 44.1 bits (103), Expect = 0.040, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTLEAM 165 G+V STL + Sbjct: 450 KTDGVVGFSTLVHL 463 >gi|262369492|ref|ZP_06062820.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262315560|gb|EEY96599.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 416 Score = 44.1 bits (103), Expect = 0.040, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 85/277 (30%), Gaps = 65/277 (23%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 A+ FQ GL +G + T +A+ + ++ + E + Y + Sbjct: 167 KAIASFQQMSGLKATGTLTKETWDALLASQGSKPAFIEYTI------TEADLKGPYA-AS 219 Query: 200 IP-AASLEAVENGKVGLRSTV--IVGRVDR----------QTPILHSRINRIMF-NPYWV 245 IP +L+A G + V ++G I +I+ N Sbjct: 220 IPRDYALQAKMKG--LYYTRVTEMLGEKFHMDEDFLQKLNPKAIFKKAGEKIIVANIRNE 277 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVD---------------WNS 290 +P I ++A YL ++ MI + + W S Sbjct: 278 VPEDIHL--IVAHKGAKQLYLFNSRNQMIGSFPATIGSSDTPSPTGTYKVTGVAPNPWYS 335 Query: 291 PEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 P NF PG + + I S+ + +H TP P + + GC Sbjct: 336 YSPSNFVQGKNLKPLSLPPGPNGPVGNIWIGL-SKKSFGIHGTPNPSAISKTA---SHGC 391 Query: 344 VRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 +R+ N W + + VK+ T Sbjct: 392 IRLTN--------------WDANDLGKKVKSGVTVKF 414 >gi|157692794|ref|YP_001487256.1| spore cortex-lytic enzyme [Bacillus pumilus SAFR-032] gi|157681552|gb|ABV62696.1| spore cortex-lytic enzyme [Bacillus pumilus SAFR-032] Length = 303 Score = 44.1 bits (103), Expect = 0.041, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 3/71 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPS 154 + + G + V L+ RL +G + + + AV+ FQ ++G+ Sbjct: 31 AFTSQVIQRGATGEDVVELQARLQYNGFYNG--KIDGVYGWGTYWAVRNFQSQYGVKKVD 88 Query: 155 GMVDSSTLEAM 165 G+V T + Sbjct: 89 GLVGKQTKSLL 99 >gi|154687638|ref|YP_001422799.1| YvjB [Bacillus amyloliquefaciens FZB42] gi|154353489|gb|ABS75568.1| YvjB [Bacillus amyloliquefaciens FZB42] Length = 466 Score = 44.1 bits (103), Expect = 0.041, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 23/106 (21%) Query: 82 IAFYQDILSRGGW-------PELPI--------------RPLHLGNSSVSVQRLRERLII 120 + Y+ + +G W P + + +PL +S V+ + L Sbjct: 337 LTLYKWLTPKGNWIHKKGIAPTIAVSQPDYFAAGPLQLKQPLQPDMNSADVKHAQILLKG 396 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 G DP + F ++ AV FQ R+ LD + ++D T E MN Sbjct: 397 LGF-DPGRADG-YFSKTMKKAVLAFQDRYKLDKTAVIDKKTAEKMN 440 >gi|229060425|ref|ZP_04197788.1| Spore cortex-lytic enzyme [Bacillus cereus AH603] gi|229167426|ref|ZP_04295164.1| Spore cortex-lytic enzyme [Bacillus cereus AH621] gi|228615988|gb|EEK73075.1| Spore cortex-lytic enzyme [Bacillus cereus AH621] gi|228718808|gb|EEL70429.1| Spore cortex-lytic enzyme [Bacillus cereus AH603] Length = 259 Score = 44.1 bits (103), Expect = 0.041, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQTRLKYNGFYTG--KVDGVFGWGTYWALRNFQQKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|163940501|ref|YP_001645385.1| spore cortex-lytic enzyme SleB [Bacillus weihenstephanensis KBAB4] gi|229012007|ref|ZP_04169186.1| Spore cortex-lytic enzyme [Bacillus mycoides DSM 2048] gi|229133643|ref|ZP_04262469.1| Spore cortex-lytic enzyme [Bacillus cereus BDRD-ST196] gi|163862698|gb|ABY43757.1| Spore cortex-lytic enzyme SleB [Bacillus weihenstephanensis KBAB4] gi|228649678|gb|EEL05687.1| Spore cortex-lytic enzyme [Bacillus cereus BDRD-ST196] gi|228749095|gb|EEL98941.1| Spore cortex-lytic enzyme [Bacillus mycoides DSM 2048] Length = 259 Score = 44.1 bits (103), Expect = 0.041, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQTRLKYNGFYTG--KVDGVFGWGTYWALRNFQQKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|297588474|ref|ZP_06947117.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Finegoldia magna ATCC 53516] gi|297573847|gb|EFH92568.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Finegoldia magna ATCC 53516] Length = 469 Score = 44.1 bits (103), Expect = 0.042, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTP 229 + +G Y+ +++ A L ++GK+ L + V+ G D +TP Sbjct: 334 RSRNNGVLGKSYIEISLGAQHLWYFKDGKLVLDTPVVTGDPSIDHETP 381 >gi|300932216|ref|ZP_07147495.1| conserved hypothetical protein [Escherichia coli MS 187-1] gi|300460040|gb|EFK23533.1| conserved hypothetical protein [Escherichia coli MS 187-1] Length = 489 Score = 44.1 bits (103), Expect = 0.042, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTLEAM 165 G+V STL + Sbjct: 450 KTDGVVGFSTLVHL 463 >gi|301059160|ref|ZP_07200101.1| peptidoglycan binding domain protein [delta proteobacterium NaphS2] gi|300446740|gb|EFK10564.1| peptidoglycan binding domain protein [delta proteobacterium NaphS2] Length = 395 Score = 44.1 bits (103), Expect = 0.042, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 2/56 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 SV+ L+ RL G S A++ FQ HGL G L Sbjct: 96 DPSVRELQRRLAKLGYKPGSADGKTG--TKTRKAIRWFQAAHGLTVDGRFSEQLLA 149 >gi|238926893|ref|ZP_04658653.1| NLP/P60 protein [Selenomonas flueggei ATCC 43531] gi|238885425|gb|EEQ49063.1| NLP/P60 protein [Selenomonas flueggei ATCC 43531] Length = 251 Score = 44.1 bits (103), Expect = 0.043, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L G+ V L+ L +G P K + F+ AV +FQ + + +G+V+++ Sbjct: 33 TLCEGSHGHDVLVLQRALQNAGY--PVKNIDGIFNKETGHAVAMFQRDNKIKITGVVNNA 90 Query: 161 TLEAMNVPVDLR 172 T A+ R Sbjct: 91 TWRALRNAPAKR 102 >gi|297516593|ref|ZP_06934979.1| general secretory pathway component, cryptic [Escherichia coli OP50] Length = 462 Score = 44.1 bits (103), Expect = 0.043, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 365 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 422 Query: 152 DPSGMVDSSTLEAM 165 G+V STL + Sbjct: 423 KTDGVVGFSTLVHL 436 >gi|332085474|gb|EGI90640.1| putative peptidoglycan binding domain protein [Shigella boydii 5216-82] Length = 466 Score = 44.1 bits (103), Expect = 0.043, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 369 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 426 Query: 152 DPSGMVDSSTLEAM 165 G+V STL + Sbjct: 427 KTDGVVGFSTLVHL 440 >gi|225427820|ref|XP_002275830.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 287 Score = 44.1 bits (103), Expect = 0.044, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G+ +Q++++ L G L + S FD +ES++K FQ + L+ +G +D+ Sbjct: 51 KKGDKREGIQKVKQYLQRYGYLSSTHYSQMGSDDFDDALESSLKAFQTFYHLNSTGTLDA 110 Query: 160 STLEAMNVP 168 T M+ P Sbjct: 111 PTATLMSKP 119 >gi|323934479|gb|EGB30887.1| general secretion pathway protein A [Escherichia coli E1520] Length = 477 Score = 44.1 bits (103), Expect = 0.044, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 380 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 437 Query: 152 DPSGMVDSSTLEAM 165 G+V STL + Sbjct: 438 KTDGVVGFSTLVHL 451 >gi|307944914|ref|ZP_07660251.1| N-acetylmuramoyl-L-alanine amidase AmiD [Roseibium sp. TrichSKD4] gi|307771838|gb|EFO31062.1| N-acetylmuramoyl-L-alanine amidase AmiD [Roseibium sp. TrichSKD4] Length = 254 Score = 44.1 bits (103), Expect = 0.044, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 6/74 (8%) Query: 95 PELPIRPL--HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 PE+ R + G S V+ L+ L I G ++ FDA AV+ FQ + + Sbjct: 172 PEVTGRGIFMQEGESGQPVEALQSMLAIFGY---RMEVTGQFDATTRLAVEAFQRHYRPE 228 Query: 153 P-SGMVDSSTLEAM 165 G+VD ST+E + Sbjct: 229 QVDGIVDQSTIETL 242 >gi|228991584|ref|ZP_04151528.1| Spore cortex-lytic enzyme [Bacillus pseudomycoides DSM 12442] gi|228768153|gb|EEM16772.1| Spore cortex-lytic enzyme [Bacillus pseudomycoides DSM 12442] Length = 251 Score = 44.1 bits (103), Expect = 0.044, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQQKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|228997686|ref|ZP_04157293.1| Spore cortex-lytic enzyme [Bacillus mycoides Rock3-17] gi|229009044|ref|ZP_04166383.1| Spore cortex-lytic enzyme [Bacillus mycoides Rock1-4] gi|228752214|gb|EEM01903.1| Spore cortex-lytic enzyme [Bacillus mycoides Rock1-4] gi|228762030|gb|EEM10969.1| Spore cortex-lytic enzyme [Bacillus mycoides Rock3-17] Length = 251 Score = 44.1 bits (103), Expect = 0.044, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQQKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|224097718|ref|XP_002311052.1| predicted protein [Populus trichocarpa] gi|222850872|gb|EEE88419.1| predicted protein [Populus trichocarpa] Length = 309 Score = 44.1 bits (103), Expect = 0.044, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%) Query: 107 SSVSVQRLRERLIISGDLD--------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 S + L+ L G L + FD +ESA+K +Q H L+ +G +D Sbjct: 46 SVKGLHELKRYLEKFGYLKYGHQGKKGHNHANDDEFDDLLESAIKAYQQNHHLNVTGSLD 105 Query: 159 SSTLEAM 165 +ST+ M Sbjct: 106 NSTVHEM 112 >gi|331684965|ref|ZP_08385551.1| general secretory pathway component, cryptic [Escherichia coli H299] gi|331077336|gb|EGI48548.1| general secretory pathway component, cryptic [Escherichia coli H299] Length = 489 Score = 44.1 bits (103), Expect = 0.045, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 4/74 (5%) Query: 94 WPELPIR--PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 W P + +S + L L + L S S + + +K FQ H L Sbjct: 392 WKMSPEGESTITRDSSEEEILWLETMLNRA--LHISTEPSAEWRPLLVEKIKQFQKSHHL 449 Query: 152 DPSGMVDSSTLEAM 165 G+V STL + Sbjct: 450 KTDGVVGFSTLVHL 463 >gi|300118714|ref|ZP_07056440.1| spore cortex-lytic enzyme [Bacillus cereus SJ1] gi|298723871|gb|EFI64587.1| spore cortex-lytic enzyme [Bacillus cereus SJ1] Length = 157 Score = 44.1 bits (103), Expect = 0.045, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|228965691|ref|ZP_04126772.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar sotto str. T04001] gi|228794099|gb|EEM41621.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar sotto str. T04001] Length = 102 Score = 44.1 bits (103), Expect = 0.045, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 18 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 75 Query: 162 LEAM 165 + + Sbjct: 76 KQML 79 >gi|289579043|ref|YP_003477670.1| peptidoglycan-binding protein [Thermoanaerobacter italicus Ab9] gi|289528756|gb|ADD03108.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter italicus Ab9] Length = 420 Score = 44.1 bits (103), Expect = 0.045, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 R L+ G V+ L+ L +G + + F + V FQ L P G Sbjct: 36 TFGSRLLYSGTYGTDVKELQAMLNKTGF--DTGTVDGIFGKMTLNGVLDFQRSKNLVPDG 93 Query: 156 MVDSSTLEAM 165 +V T + Sbjct: 94 IVGPKTYAVL 103 >gi|26249918|ref|NP_755958.1| general secretion pathway protein A [Escherichia coli CFT073] gi|227883454|ref|ZP_04001259.1| general secretion pathway protein A [Escherichia coli 83972] gi|300979894|ref|ZP_07174770.1| conserved hypothetical protein [Escherichia coli MS 45-1] gi|301046094|ref|ZP_07193272.1| conserved hypothetical protein [Escherichia coli MS 185-1] gi|26110346|gb|AAN82532.1|AE016767_292 Probable general secretion pathway protein A [Escherichia coli CFT073] gi|227839598|gb|EEJ50064.1| general secretion pathway protein A [Escherichia coli 83972] gi|300301920|gb|EFJ58305.1| conserved hypothetical protein [Escherichia coli MS 185-1] gi|300409405|gb|EFJ92943.1| conserved hypothetical protein [Escherichia coli MS 45-1] gi|307555410|gb|ADN48185.1| export protein A for general secretion pathway [Escherichia coli ABU 83972] gi|315292360|gb|EFU51712.1| conserved hypothetical protein [Escherichia coli MS 153-1] Length = 489 Score = 44.1 bits (103), Expect = 0.045, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 18/42 (42%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L S S + + +K FQ H L G+V STL + Sbjct: 422 LHISTESSAEWRPLLVEKIKQFQKSHHLKTDGVVGFSTLVHL 463 >gi|91212760|ref|YP_542746.1| general secretion pathway protein A [Escherichia coli UTI89] gi|218560384|ref|YP_002393297.1| general secretory pathway component, cryptic [Escherichia coli S88] gi|237703053|ref|ZP_04533534.1| general secretion pathway protein A [Escherichia sp. 3_2_53FAA] gi|91074334|gb|ABE09215.1| probable general secretion pathway protein A [Escherichia coli UTI89] gi|218367153|emb|CAR04927.1| general secretory pathway component, cryptic [Escherichia coli S88] gi|226902317|gb|EEH88576.1| general secretion pathway protein A [Escherichia sp. 3_2_53FAA] gi|294492719|gb|ADE91475.1| putative general secretory pathway protein A [Escherichia coli IHE3034] gi|307628358|gb|ADN72662.1| general secretory pathway component, cryptic [Escherichia coli UM146] gi|315284602|gb|EFU44047.1| conserved hypothetical protein [Escherichia coli MS 110-3] gi|323950237|gb|EGB46119.1| general secretion pathway protein A [Escherichia coli H252] gi|323954554|gb|EGB50337.1| general secretion pathway protein A [Escherichia coli H263] Length = 489 Score = 44.1 bits (103), Expect = 0.046, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 18/42 (42%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L S S + + +K FQ H L G+V STL + Sbjct: 422 LHISTESSAEWRPLLVEKIKQFQKSHHLKTDGVVGFSTLVHL 463 >gi|329934357|ref|ZP_08284436.1| hypothetical protein SGM_0148 [Streptomyces griseoaurantiacus M045] gi|329305953|gb|EGG49808.1| hypothetical protein SGM_0148 [Streptomyces griseoaurantiacus M045] Length = 282 Score = 44.1 bits (103), Expect = 0.046, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G++ V + L+ + P G+ F AV+ Q R GL G V T + Sbjct: 221 YGSTGPEVAE-AQCLLRRAGISPG-GIDGIFGPLTRRAVRAMQQRSGLAVDGRVGPHTWK 278 Query: 164 AM 165 A+ Sbjct: 279 AL 280 >gi|16331313|ref|NP_442041.1| hypothetical protein slr0769 [Synechocystis sp. PCC 6803] gi|1001486|dbj|BAA10111.1| slr0769 [Synechocystis sp. PCC 6803] Length = 204 Score = 44.1 bits (103), Expect = 0.046, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 54/169 (31%), Gaps = 49/169 (28%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 Q + VLV + + A +N KV V VG+ +TP + ++ +++ NP W P Sbjct: 69 SQALATHIVLV-LGERKVYAYQNDKVLASYPVAVGKKGWETPQGNFQVIQMVENPVWENP 127 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 N + + + + + S N Sbjct: 128 W--------------------NGKKVAASLDGPIGIRWIGFWSDG------------KNT 155 Query: 308 MASTKIEFYSRNNTYMHDTPEPI-LFNNVVRFETSGCVRVRNIIDLDVW 355 + H TP+ F + GCVR+RN + ++ Sbjct: 156 IG-------------FHGTPKKHEHFLGT--AASHGCVRMRNQDVVALF 189 >gi|205375088|ref|ZP_03227879.1| carboxyl-terminal protease [Bacillus coahuilensis m4-4] Length = 156 Score = 44.1 bits (103), Expect = 0.047, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V+ +E L G + AVK FQ + GL +G +DS Sbjct: 65 KTLTKEMNNDQVKSAQEMLYSLGY--GPGRTDGYYSNQTAIAVKAFQSKAGLTSTGNIDS 122 Query: 160 STLEAMNVPVDLRIRQ 175 T A+ + I + Sbjct: 123 QTASALEKTIMKEIEK 138 >gi|332799446|ref|YP_004460945.1| carboxyl-terminal protease [Tepidanaerobacter sp. Re1] gi|332697181|gb|AEE91638.1| carboxyl-terminal protease [Tepidanaerobacter sp. Re1] Length = 473 Score = 44.1 bits (103), Expect = 0.047, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + L GN + V +++RL + + F + AVK Q + GL +G+V Sbjct: 375 SQKTLKYGNIGLEVLGIQQRLRFLNLFNTTPDG--VFGPRTQQAVKALQQKAGLPSTGVV 432 Query: 158 DSSTLEAM 165 D++ +A+ Sbjct: 433 DANFYKAL 440 >gi|268609046|ref|ZP_06142773.1| spore cortex-lytic enzyme, pre-pro-form [Ruminococcus flavefaciens FD-1] Length = 463 Score = 44.1 bits (103), Expect = 0.047, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 11/125 (8%) Query: 95 PELPIRPLHLGNSSVSVQRLRERL-IISGDLDPSKGLSVA---FDAYVESAVKLFQMRHG 150 P L +G++ V+ L+ L ISG+ + A FD +AV+ FQ G Sbjct: 176 PSFGGIDLAVGSAGNDVKSLQVFLNRISGNYPAIPKIPQADGIFDEATAAAVRTFQQVFG 235 Query: 151 LDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM--RIKKLLE-----QKMGLRYVLVNIPAA 203 L+ +G+V++ST + ++N R++++ K+G++ + V++ Sbjct: 236 LETTGIVNASTWYRITYIYTSVKHIAELNSEGVRLEEISPVFTEDLKIGMQSIEVSVLQY 295 Query: 204 SLEAV 208 L + Sbjct: 296 YLAVI 300 Score = 43.7 bits (102), Expect = 0.061, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 3/73 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLD 152 + L +G S+ V L+ L + G + ++ F E +VK FQ GL Sbjct: 275 PVFTEDLKIGMQSIEVSVLQYYLAVIGAYYEAVTPVEITGYFGEKTELSVKSFQRVFGLP 334 Query: 153 PSGMVDSSTLEAM 165 +G VD +T + Sbjct: 335 QTGEVDRATRNDL 347 Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 13/121 (10%) Query: 55 FLARVDMGIDSDIPIISKETIAQTEKA-----IAFYQDILSR--GGWPEL---PIRPLHL 104 F + ++ + S + + ++A YQ I + + P L Sbjct: 316 FGEKTELSVKSFQRVFGLPQTGEVDRATRNDLYRAYQGIAEAVPPQYTAVALYPGTVLRE 375 Query: 105 GNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G S SV+ ++E L I+ PS + F + +V FQ + G+D +G+V + T Sbjct: 376 GVSGSSVRIIQEYLTYINRSYPNIPSVSNTGYFGPLTKQSVMAFQRQFGIDQTGIVGAVT 435 Query: 162 L 162 Sbjct: 436 W 436 >gi|194435137|ref|ZP_03067372.1| probable general secretion pathway protein A [Shigella dysenteriae 1012] gi|194416634|gb|EDX32768.1| probable general secretion pathway protein A [Shigella dysenteriae 1012] gi|332085960|gb|EGI91124.1| putative peptidoglycan binding domain protein [Shigella dysenteriae 155-74] Length = 406 Score = 44.1 bits (103), Expect = 0.048, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 18/42 (42%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L S S + + +K FQ H L G+V STL + Sbjct: 339 LHISTEPSAEWRPLLVEKIKQFQKSHHLKTDGVVGFSTLVHL 380 >gi|166030996|ref|ZP_02233825.1| hypothetical protein DORFOR_00677 [Dorea formicigenerans ATCC 27755] gi|166029263|gb|EDR48020.1| hypothetical protein DORFOR_00677 [Dorea formicigenerans ATCC 27755] Length = 419 Score = 44.1 bits (103), Expect = 0.048, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G++ V++++E+L++ D P+ F E+AV+ FQ+ GL + Sbjct: 335 PGYDLSIGSTGDKVRQMQEQLLVISDAYPAIPKIDADGIFGPATEAAVRKFQLIFGLPVT 394 Query: 155 GMVDSSTLE 163 G+VD T Sbjct: 395 GIVDYKTWY 403 >gi|229541523|ref|ZP_04430583.1| carboxyl-terminal protease [Bacillus coagulans 36D1] gi|229325943|gb|EEN91618.1| carboxyl-terminal protease [Bacillus coagulans 36D1] Length = 478 Score = 44.1 bits (103), Expect = 0.048, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L ++ ++ ++ L G + FD E+AVK FQ GL +G ++ Sbjct: 388 SRMLKKDMNNTQIKTAQQMLKSLGFSPGREDG--YFDIQTENAVKAFQFDKGLPVTGSIN 445 Query: 159 SSTLEAM 165 T + M Sbjct: 446 QKTADEM 452 >gi|227823392|ref|YP_002827365.1| putative peptidoglycan-binding protein [Sinorhizobium fredii NGR234] gi|227342394|gb|ACP26612.1| putative peptidoglycan-binding protein [Sinorhizobium fredii NGR234] Length = 405 Score = 44.1 bits (103), Expect = 0.048, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 9/88 (10%) Query: 78 TEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 I+ Y + R WP P L + L+ RL G D + F + Sbjct: 325 LADQISGYAGMQQR--WPR-PDGSLDISEKF----ELQNRLKELGYYDGEVDGN--FGSG 375 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++A++ FQ ++GL P G + L A+ Sbjct: 376 SKAAIQAFQTQNGLTPDGEPTQNLLRAL 403 >gi|253564757|ref|ZP_04842213.1| peptidoglycan-binding domain 1 protein [Bacteroides sp. 3_2_5] gi|251946222|gb|EES86599.1| peptidoglycan-binding domain 1 protein [Bacteroides sp. 3_2_5] Length = 264 Score = 44.1 bits (103), Expect = 0.049, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 6/78 (7%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ + LG L L +G S S F ++ +V FQ + LD G+V Sbjct: 1 MKTIKLGYEGEEALLLCRELKRNGY---SVKESRTFTQEMKESVVDFQQKSQLDADGIVG 57 Query: 159 SSTLEAM---NVPVDLRI 173 T E++ P R+ Sbjct: 58 YRTWESLFFTGRPTTERL 75 >gi|189425359|ref|YP_001952536.1| peptidoglycan-binding protein [Geobacter lovleyi SZ] gi|189421618|gb|ACD96016.1| Peptidoglycan-binding domain 1 protein [Geobacter lovleyi SZ] Length = 532 Score = 44.1 bits (103), Expect = 0.049, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV-PVDL 171 L L+ +G P++ + + V A+K FQ GL+ +G+ TL +N D Sbjct: 462 LLARLLVSAGAWPPNQPVIT--EGAVREALKTFQQSQGLEAAGVAGGQTLLLLNRQTPDF 519 Query: 172 RIRQLQVNLMR 182 ++ L+ R Sbjct: 520 KVPVLKK-AER 529 >gi|323488226|ref|ZP_08093476.1| putative spore cortex-lytic enzyme precursor [Planococcus donghaensis MPA1U2] gi|323398084|gb|EGA90880.1| putative spore cortex-lytic enzyme precursor [Planococcus donghaensis MPA1U2] Length = 207 Score = 44.1 bits (103), Expect = 0.050, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LH+G S V+ L+ +L G S + + ++AV FQ + +G T Sbjct: 31 LHVGVSGEGVKELQIKLKKLGYFSTSA--TGYYGPVTKNAVIEFQRDFNVSATGFTGPLT 88 Query: 162 LEAM 165 + Sbjct: 89 RARL 92 >gi|169333708|ref|ZP_02860901.1| hypothetical protein ANASTE_00092 [Anaerofustis stercorihominis DSM 17244] gi|169259557|gb|EDS73523.1| hypothetical protein ANASTE_00092 [Anaerofustis stercorihominis DSM 17244] Length = 242 Score = 44.1 bits (103), Expect = 0.050, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 96 ELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + PL G+ V++ + +L G + F + SAVK FQ ++ L Sbjct: 172 PVSEYPLIRKGSKGSYVKKAQTQLNKKGGYK--LKVDGIFGSATLSAVKKFQKKNKLVVD 229 Query: 155 GMVDSSTLEAM 165 G+V + T + Sbjct: 230 GIVGAKTWSKL 240 >gi|291451766|ref|ZP_06591156.1| predicted protein [Streptomyces albus J1074] gi|291354715|gb|EFE81617.1| predicted protein [Streptomyces albus J1074] Length = 301 Score = 44.1 bits (103), Expect = 0.050, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + V+ AV+ FQ + G+V T + Sbjct: 263 AVDGLYGPVVQEAVRRFQAARRIPVDGVVGPDTWGEL 299 >gi|288960163|ref|YP_003450503.1| hypothetical protein AZL_a04280 [Azospirillum sp. B510] gi|288912471|dbj|BAI73959.1| hypothetical protein AZL_a04280 [Azospirillum sp. B510] Length = 257 Score = 44.1 bits (103), Expect = 0.050, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 9/64 (14%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFD----AYVESAVKLFQMRHGLDPSGMVDSSTL 162 S V+ +++ L D + G +A D A A+ FQ +GL +G D T+ Sbjct: 143 SHEQVREIQQALN-----DRTDGRDIAVDGVWGAGTRRALMRFQRDNGLRATGRADQQTM 197 Query: 163 EAMN 166 A+N Sbjct: 198 AALN 201 >gi|224097714|ref|XP_002311050.1| predicted protein [Populus trichocarpa] gi|222850870|gb|EEE88417.1| predicted protein [Populus trichocarpa] Length = 309 Score = 44.1 bits (103), Expect = 0.050, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%) Query: 107 SSVSVQRLRERLIISGDLD--------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 S + L+ L G L + FD +ESA+K +Q H L+ +G +D Sbjct: 46 SVKGLHELKRYLEKFGYLKYGHQGKKGHNHANDDEFDDLLESAIKAYQQNHHLNVTGSLD 105 Query: 159 SSTLEAM 165 +ST+ M Sbjct: 106 NSTVHEM 112 >gi|124266224|ref|YP_001020228.1| general secretion pathway protein A [Methylibium petroleiphilum PM1] gi|124258999|gb|ABM93993.1| general secretion pathway protein A [Methylibium petroleiphilum PM1] Length = 563 Score = 44.1 bits (103), Expect = 0.050, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 5/55 (9%) Query: 114 LRERLI-ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L RL +GD P + + A + FQ GL P G+ TL +N Sbjct: 501 LAARLATAAGDAAPGETSAAALKPRIA----AFQSTQGLAPDGLAGPITLMQLNR 551 >gi|291539241|emb|CBL12352.1| Putative peptidoglycan-binding domain-containing protein [Roseburia intestinalis XB6B4] Length = 419 Score = 44.1 bits (103), Expect = 0.051, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLI-ISGDLD--PSKGLSVAFDAYVESAVKLFQMRHG 150 WP + L +G++ V++++E L IS P+ + AV++FQ G Sbjct: 334 WPRVD---LTIGSTGEKVRQIQEELARISRSYPAIPTVTPDGIYGPATREAVEVFQRVFG 390 Query: 151 LDPSGMVDSSTLE 163 L +G++D T Sbjct: 391 LPVTGVIDYRTWY 403 >gi|289644092|ref|ZP_06476188.1| Peptidoglycan-binding domain 1 protein [Frankia symbiont of Datisca glomerata] gi|289506092|gb|EFD27095.1| Peptidoglycan-binding domain 1 protein [Frankia symbiont of Datisca glomerata] Length = 146 Score = 44.1 bits (103), Expect = 0.051, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 13/86 (15%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S VQ ++ L G S + F E+AV+ FQ G+ G V + A Sbjct: 11 GSSGEPVQTIQYLLRAHGY---SVTVDGVFGPATEAAVRAFQSSAGIVVDGAVGDQSWPA 67 Query: 165 MNVPV----------DLRIRQLQVNL 180 + + V +R Q Q N Sbjct: 68 LIITVRDGDRSEKGDAVRAVQDQANA 93 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 11/79 (13%) Query: 94 WPELPIRPLHLGNSSVSVQRLRE-------RLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 WP L I + G+ S +R R+ G+ P G F ++ V+ FQ Sbjct: 65 WPAL-IITVRDGDRSEKGDAVRAVQDQANARISDPGNFLPVDG---VFGRRTDAWVRGFQ 120 Query: 147 MRHGLDPSGMVDSSTLEAM 165 G+ G+V +T + Sbjct: 121 QHAGITVDGIVGPTTWNRL 139 >gi|291486076|dbj|BAI87151.1| hypothetical protein BSNT_05362 [Bacillus subtilis subsp. natto BEST195] Length = 480 Score = 44.1 bits (103), Expect = 0.051, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 23/112 (20%) Query: 82 IAFYQDILSRGGW-------PELPIR--------------PLHLGNSSVSVQRLRERLII 120 + Y+ + G W P + I+ PL + ++ V+ + L+ Sbjct: 351 LTLYKWLTPNGNWIHKKGIEPTIAIKQPDYFSAGPLQLKEPLKVDMNNEDVKH-AQVLLK 409 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 DP + F ++ AV FQ ++ L+ +G++D+ T E +N ++ + Sbjct: 410 GLSFDPGREDG-YFSKDMKKAVMAFQDQNKLNKTGVIDTRTAETLNRQIEKK 460 >gi|226357324|ref|YP_002787064.1| hypothetical protein Deide_22781 [Deinococcus deserti VCD115] gi|226319314|gb|ACO47310.1| Conserved hypothetical protein, precursor [Deinococcus deserti VCD115] Length = 295 Score = 44.1 bits (103), Expect = 0.051, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + ++ + RLI + + + V+ FQ + L +G +D +T A+ Sbjct: 222 MNGSDIRAAQNRLIQLTEDSRGGQGDGWYGPVTAATVRAFQAANNLPVTGRIDQATWRAL 281 Query: 166 NVPVDLR 172 R Sbjct: 282 -FSPAAR 287 >gi|90418710|ref|ZP_01226621.1| conserved hypothetical protein with putative peptidoglycan-binding domain [Aurantimonas manganoxydans SI85-9A1] gi|90336790|gb|EAS50495.1| conserved hypothetical protein with putative peptidoglycan-binding domain [Aurantimonas manganoxydans SI85-9A1] Length = 1306 Score = 44.1 bits (103), Expect = 0.051, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +++ ++ LI G + V +A+K FQ GL G +D + + A+ Sbjct: 1247 AIRNIQAILIKLGYEPGAPDGVVG--QQTTAAIKAFQKEAGLTADGSIDETLIRAL 1300 >gi|153830422|ref|ZP_01983089.1| VgrG protein [Vibrio cholerae 623-39] gi|148874096|gb|EDL72231.1| VgrG protein [Vibrio cholerae 623-39] Length = 1037 Score = 43.7 bits (102), Expect = 0.052, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 30/147 (20%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 I + L I+ S ++ ND + + SD+ S E ++ + Y+ Sbjct: 671 IDVASLPTIMPSSANNTANDEPVAEEKTPERILKSDLLKPSDELEKLAKRQASAYRQ--- 727 Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH- 149 GN S V+ L+E LI G G F ++A++ FQ + Sbjct: 728 --------------GNHSDEVKLLQEALIKLGFDLGKAGADGDFGGKTKTAIEQFQKSYQ 773 Query: 150 -----------GLDPSGMVDSSTLEAM 165 G G+V + TL A+ Sbjct: 774 PSHQTHPSYSIG-PVDGIVGNGTLLAL 799 >gi|257413209|ref|ZP_04742330.2| spore cortex-lytic enzyme SleC [Roseburia intestinalis L1-82] gi|257204288|gb|EEV02573.1| spore cortex-lytic enzyme SleC [Roseburia intestinalis L1-82] Length = 427 Score = 43.7 bits (102), Expect = 0.052, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLI-ISGDLD--PSKGLSVAFDAYVESAVKLFQMRHG 150 WP + L +G++ V++++E L IS P+ + AV++FQ G Sbjct: 342 WPRVD---LTIGSTGEKVRQIQEELARISRSYPAIPTVTPDGIYGPATREAVEVFQRVFG 398 Query: 151 LDPSGMVDSSTLE 163 L +G++D T Sbjct: 399 LPVTGVIDYRTWY 411 >gi|239979911|ref|ZP_04702435.1| hypothetical protein SalbJ_10752 [Streptomyces albus J1074] Length = 270 Score = 43.7 bits (102), Expect = 0.052, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 15/37 (40%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + V+ AV+ FQ + G+V T + Sbjct: 232 AVDGLYGPVVQEAVRRFQAARRIPVDGVVGPDTWGEL 268 >gi|86747744|ref|YP_484240.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris HaA2] gi|86570772|gb|ABD05329.1| Peptidoglycan-binding domain 1 [Rhodopseudomonas palustris HaA2] Length = 460 Score = 43.7 bits (102), Expect = 0.052, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 Q ++ L +GD + + + +A+K FQ HG +G+++ + Sbjct: 62 QAIQSDLAWTGDYNGVINGEPS--ERMVTAIKAFQKNHGGKQTGVLNPQERAQL----TE 115 Query: 172 RIRQLQVN 179 R+LQ N Sbjct: 116 AARKLQGN 123 >gi|291537294|emb|CBL10406.1| Putative peptidoglycan-binding domain-containing protein [Roseburia intestinalis M50/1] Length = 419 Score = 43.7 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLI-ISGDLD--PSKGLSVAFDAYVESAVKLFQMRHG 150 WP + L +G++ V++++E L IS P+ + AV++FQ G Sbjct: 334 WPRVD---LTIGSTGEKVRQIQEELARISRSYPAIPTVTPDGIYGPATREAVEVFQRVFG 390 Query: 151 LDPSGMVDSSTLE 163 L +G++D T Sbjct: 391 LPVTGVIDYRTWY 403 >gi|226940770|ref|YP_002795844.1| ErfK/YbiS/YcfS/YnhG family protein [Laribacter hongkongensis HLHK9] gi|226715697|gb|ACO74835.1| ErfK/YbiS/YcfS/YnhG family protein [Laribacter hongkongensis HLHK9] Length = 235 Score = 43.7 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 55/192 (28%), Gaps = 71/192 (36%) Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 NP W +PRSI Q+ + GK V Sbjct: 9 NPAWHVPRSIQQE--------------------MARAGKTVQTVV--------------- 33 Query: 301 DPGKINAMASTKIEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLL 357 PG N + I F MH T P +V F + GCVR+ + +DL Sbjct: 34 PPGPQNPLGKVFIRFGEPGLGLGMHGTNAPG---SVPGFRSHGCVRLRNEDALDLAS--- 87 Query: 358 KDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYISAWSPKDSI----IQFRDDIYGLD 413 ++ VPV +Y S +D+ + D YG Sbjct: 88 -----------------------RVRYGVPVSVIYQSVLLNQDARGDVWMTAFADRYGKT 124 Query: 414 NVHVGIIPLPED 425 + I + Sbjct: 125 TANAAQIRTAAE 136 >gi|210631829|ref|ZP_03297071.1| hypothetical protein COLSTE_00961 [Collinsella stercoris DSM 13279] gi|210159949|gb|EEA90920.1| hypothetical protein COLSTE_00961 [Collinsella stercoris DSM 13279] Length = 302 Score = 43.7 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 12/84 (14%) Query: 94 WPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W L LG+ VQ L+ L G F + E+A++ Sbjct: 65 WSALVDASYKLGDRTLYLRLPNFHGADVQALQRALNTLGFACGVDDG--FFGPHTEAALQ 122 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNV 167 FQ GL GM T +N Sbjct: 123 QFQENVGLFADGMAFQDTFAYINR 146 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + + G +V+ ++ RL G +D ++ + F +AV+ F+ GL+P V Sbjct: 1 MESIAQGMQGPAVEDVQTRLTSLGYTIDEAETSAKEFGTTSAAAVRAFRASQGLEPGDEV 60 Query: 158 DSSTLEAM 165 D + A+ Sbjct: 61 DGAAWSAL 68 >gi|253701653|ref|YP_003022842.1| peptidoglycan-binding protein [Geobacter sp. M21] gi|251776503|gb|ACT19084.1| Peptidoglycan-binding domain 1 protein [Geobacter sp. M21] Length = 536 Score = 43.7 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G V+ L+ L G D + ++ F ++AV FQ R L G + TL Sbjct: 454 KAGEKEAGVRLLQGLLKQVGCYDGA--VNGEFTDKTQAAVAEFQRREQLTADGKLGGQTL 511 Query: 163 EAM 165 + Sbjct: 512 MML 514 >gi|41057064|ref|NP_957546.1| hypothetical protein pCD6_p4 [Clostridium difficile] gi|38196035|gb|AAR13708.1| unknown [Clostridium difficile] Length = 186 Score = 43.7 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 GNS V ++ L G + + F S VK FQ +GL G+V S+T Sbjct: 120 KYGNSGNPVHLVQLLLKKVGY---ALEVDSQFGNTTLSKVKSFQGSYGLTVDGIVGSATW 176 Query: 163 E 163 + Sbjct: 177 K 177 >gi|256378112|ref|YP_003101772.1| peptidoglycan-binding domain 1 protein [Actinosynnema mirum DSM 43827] gi|255922415|gb|ACU37926.1| Peptidoglycan-binding domain 1 protein [Actinosynnema mirum DSM 43827] Length = 358 Score = 43.7 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 3/70 (4%) Query: 103 HLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G V + + L G + P F V A+K +Q + GL +G V+ Sbjct: 124 EPGVKGSDVAVVMDNLAALGYTVGIRPDDDSKAEFTPRVVEALKKWQRKVGLPDTGKVEP 183 Query: 160 STLEAMNVPV 169 + + PV Sbjct: 184 GQVLVLAGPV 193 >gi|307153693|ref|YP_003889077.1| peptidoglycan-binding domain 1 protein [Cyanothece sp. PCC 7822] gi|306983921|gb|ADN15802.1| Peptidoglycan-binding domain 1 protein [Cyanothece sp. PCC 7822] Length = 479 Score = 43.7 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDP-----SKGLSVAFDAYVESAVKLFQMRHGLDP-SG 155 L G++ +V+++++ LI P + + A VK FQ L G Sbjct: 109 LRNGSTGEAVKKIQQALIDLKYPMPISTQKTGEPDGIYGAETSKTVKQFQTDQALKDKDG 168 Query: 156 MVDSSTLEAM 165 +V T+E + Sbjct: 169 IVGKDTIEKL 178 >gi|114704710|ref|ZP_01437618.1| TPR repeat [Fulvimarina pelagi HTCC2506] gi|114539495|gb|EAU42615.1| TPR repeat [Fulvimarina pelagi HTCC2506] Length = 516 Score = 43.7 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 10/56 (17%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYV----ESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ RL +GD + FD + A++ FQ RHG++PSG++ L + Sbjct: 49 LQIRLAWTGDYEGE------FDGIIGPRSLRAIRDFQARHGMEPSGIISDDMLAQL 98 >gi|90423688|ref|YP_532058.1| negative regulator of AmpC, AmpD [Rhodopseudomonas palustris BisB18] gi|90105702|gb|ABD87739.1| negative regulator of AmpC, AmpD [Rhodopseudomonas palustris BisB18] Length = 289 Score = 43.7 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 8/88 (9%) Query: 90 SRGGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 + G W P + L LG V L+ L G + +D V F Sbjct: 193 AVGHWVPPAPIVRSEVLKLGADGDEVMALQRALADYGY---GLTPNGCYDPATADVVTAF 249 Query: 146 QMRHGLD-PSGMVDSSTLEAMNVPVDLR 172 Q G+ D+STL +++ ++ R Sbjct: 250 QRHFRPQRVDGIADASTLTTLHMLLESR 277 >gi|313887561|ref|ZP_07821244.1| ErfK/YbiS/YcfS/YnhG [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846439|gb|EFR33817.1| ErfK/YbiS/YcfS/YnhG [Peptoniphilus harei ACS-146-V-Sch2b] Length = 270 Score = 43.7 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 10/103 (9%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 +K +Q R L +G +++ T +A+ N + +++VN Sbjct: 44 LKKWQARMNLPVTGGMNAKTKQALYTE----------NYEVYDMVTNPPTSGNWIVVNKS 93 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 +L + G+ + V +G TP +RI+ + NP W Sbjct: 94 RRTLTLYKGGQALGKFPVTLGTGSTPTPSAKARIHNMHKNPAW 136 >gi|262173037|ref|ZP_06040714.1| VgrG protein [Vibrio mimicus MB-451] gi|261890395|gb|EEY36382.1| VgrG protein [Vibrio mimicus MB-451] Length = 991 Score = 43.7 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 13/79 (16%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH--------- 149 GN+S V+ L++ LI G G F + ++A++ FQ + Sbjct: 722 ASAYRQGNNSEEVRLLQKALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQPSHQTHPS 781 Query: 150 ---GLDPSGMVDSSTLEAM 165 G G+V TL A+ Sbjct: 782 YSIG-PVDGIVGKGTLLAL 799 >gi|149181804|ref|ZP_01860294.1| carboxyl-terminal processing protease [Bacillus sp. SG-1] gi|148850443|gb|EDL64603.1| carboxyl-terminal processing protease [Bacillus sp. SG-1] Length = 480 Score = 43.7 bits (102), Expect = 0.054, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +PL ++ V+ ++ L G + F+ E+AV+ FQ +H L +G +D+ Sbjct: 389 KPLAREMNNEQVKNAQQMLEGLGY--NPGRIDGYFNQATEAAVRSFQQKHELAATGKIDT 446 Query: 160 STLEAM 165 T + Sbjct: 447 DTASKL 452 >gi|119511038|ref|ZP_01630158.1| hypothetical protein N9414_09846 [Nodularia spumigena CCY9414] gi|119464289|gb|EAW45206.1| hypothetical protein N9414_09846 [Nodularia spumigena CCY9414] Length = 253 Score = 43.7 bits (102), Expect = 0.054, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 R L G D + D A++ FQ + L G+ T + ++ Sbjct: 33 RAVLRGLGY-DVKVTNTTLTDEETRKAIREFQRGYKLTVDGVAGPQTQDF----AATIVQ 87 Query: 175 QLQVNL 180 LQ NL Sbjct: 88 ILQANL 93 >gi|75909734|ref|YP_324030.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75703459|gb|ABA23135.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 389 Score = 43.7 bits (102), Expect = 0.054, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 3/79 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDSS 160 L G+ VQ L+ +L G + + AV FQ G+ D + Sbjct: 52 LKPGSQGPDVQTLQMQLKQLGYYSG--ITDGKYGDSTKQAVAKFQQAKVFSRVDGVADLA 109 Query: 161 TLEAMNVPVDLRIRQLQVN 179 T + + +L V Sbjct: 110 TKRVLQTALIDNQNKLAVA 128 >gi|309811332|ref|ZP_07705119.1| peptidoglycan binding domain protein [Dermacoccus sp. Ellin185] gi|308434639|gb|EFP58484.1| peptidoglycan binding domain protein [Dermacoccus sp. Ellin185] Length = 54 Score = 43.7 bits (102), Expect = 0.054, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 14/36 (38%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F +AV FQ H L G+ +T A+ Sbjct: 12 ADGVFGPQTRAAVVRFQRAHHLGVDGVAGRATFRAL 47 >gi|154684734|ref|YP_001419895.1| YbfG [Bacillus amyloliquefaciens FZB42] gi|154350585|gb|ABS72664.1| YbfG [Bacillus amyloliquefaciens FZB42] Length = 724 Score = 43.7 bits (102), Expect = 0.054, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 9/63 (14%) Query: 129 GLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEA-MNVPV-------DLRIRQLQVN 179 G S F ESAVK FQ GL G+V + ++A +++ D RIRQ+Q N Sbjct: 96 GFSGVFYENTESAVKEFQKAAGLTKQDGIVTALIMKALLDMSAFRLVAGGDKRIRQIQQN 155 Query: 180 LMR 182 L R Sbjct: 156 LNR 158 Score = 37.5 bits (86), Expect = 4.2, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 101 PLHLGNSSVSVQRLRE-RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L G+S + + L +G+ + V SAVK FQ L +G D Sbjct: 210 TLTPGDSRTGFVLIVQYALYCNGEAFDPGEFDGKYGVGVVSAVKAFQKFMCLPQTGYADM 269 Query: 160 STLEAM 165 T++A+ Sbjct: 270 PTIKAL 275 >gi|30249163|ref|NP_841233.1| peptidoglycan binding domain-containing protein [Nitrosomonas europaea ATCC 19718] gi|30180482|emb|CAD85087.1| Putative peptidoglycan binding domain 1 [Nitrosomonas europaea ATCC 19718] Length = 262 Score = 43.7 bits (102), Expect = 0.054, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LH G+ V L+E LI G S + +F A E AV FQ + L+ +G+V+ +T Sbjct: 200 LHRGSFGAGVAELQELLINKGF---SLSIDSSFGAATELAVMTFQKANSLEANGIVERNT 256 Query: 162 LEAM 165 + Sbjct: 257 WTRL 260 >gi|315640706|ref|ZP_07895808.1| S41A carboxy-terminal processing protease [Enterococcus italicus DSM 15952] gi|315483461|gb|EFU73955.1| S41A carboxy-terminal processing protease [Enterococcus italicus DSM 15952] Length = 475 Score = 43.7 bits (102), Expect = 0.055, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 7/76 (9%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 LG S +V+ L L G K + ++AVK Q + L +G+VD T E Sbjct: 393 LGLESSNVKSLNTYLAGLGY----KTSGDKYTEETQAAVKDIQKKKQLTVTGIVDKKTAE 448 Query: 164 AMNVPVDLRIRQLQVN 179 A+ QL+ N Sbjct: 449 AI---SQAAADQLKTN 461 >gi|300715947|ref|YP_003740750.1| conserved uncharacterized protein YbiS [Erwinia billingiae Eb661] gi|299061783|emb|CAX58899.1| Putative conserved uncharacterized protein YbiS [Erwinia billingiae Eb661] Length = 433 Score = 43.7 bits (102), Expect = 0.055, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 55/181 (30%), Gaps = 42/181 (23%) Query: 189 QKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 +++N L G K + V VG + + TPI W Sbjct: 94 PDAPREGIVINSAEMRLYYYPKGTKTVVVLPVGVGELGKDTPI------------NWT-- 139 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 ++ +K + P + +H + V SP P F G N Sbjct: 140 TTVQRK------KDGPTWTPTKKMHE----------DSVAAGSPLPTIFP----AGPDNP 179 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYH 367 M + H T F +R + GCVR+ D+ WL + P +R Sbjct: 180 MGLYALYIGRLYAI--HGTNAN--FGIGLR-VSHGCVRL-RADDI-KWLFDNVPVGTRVQ 232 Query: 368 I 368 Sbjct: 233 F 233 >gi|225575215|ref|ZP_03783825.1| hypothetical protein RUMHYD_03304 [Blautia hydrogenotrophica DSM 10507] gi|225037508|gb|EEG47754.1| hypothetical protein RUMHYD_03304 [Blautia hydrogenotrophica DSM 10507] Length = 619 Score = 43.7 bits (102), Expect = 0.055, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ +V+ ++ LI G G F + A + FQ +GL G +T Sbjct: 390 LCEGDQGEAVRVYQKNLISIGYDCGKNGADGDFGPATKEATQEFQGDYGLVQDGNAGPAT 449 Query: 162 LEAM 165 + Sbjct: 450 QAKL 453 >gi|225018050|ref|ZP_03707242.1| hypothetical protein CLOSTMETH_01986 [Clostridium methylpentosum DSM 5476] gi|224949196|gb|EEG30405.1| hypothetical protein CLOSTMETH_01986 [Clostridium methylpentosum DSM 5476] Length = 456 Score = 43.7 bits (102), Expect = 0.055, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 4/74 (5%) Query: 96 ELPIRP-LHLGNSSVSVQRLRERLIISGDLDPS---KGLSVAFDAYVESAVKLFQMRHGL 151 +P P L G S V V+ ++ L + P + F AV+ FQ + Sbjct: 275 TVPYPPTLQEGMSGVEVRTIQYYLSVLSYFYPEIPFVQIDGIFGPATREAVQAFQRMVNI 334 Query: 152 DPSGMVDSSTLEAM 165 G+V + T + Sbjct: 335 PSDGIVGAQTWNNL 348 Score = 43.7 bits (102), Expect = 0.061, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G S V L+ L + G P ++ F AV+ FQ GL +G V Sbjct: 376 LTEGASGEDVTNLQTYLALIGRTYTNLPEIPVTGNFGPQTAEAVRAFQRDFGLPVTGSVG 435 Query: 159 SSTLE 163 T + Sbjct: 436 PVTWQ 440 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 4/70 (5%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD----LDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P L +G + V+ ++ +L + + F +V+ FQ L Sbjct: 180 PGVALRVGMAGNDVKTIQTQLNRIANNYPSIPKIPSTDGIFGESTARSVREFQRIFNLTQ 239 Query: 154 SGMVDSSTLE 163 G+V ST Sbjct: 240 DGIVGKSTWY 249 >gi|119714782|ref|YP_921747.1| peptidoglycan binding domain-containing protein [Nocardioides sp. JS614] gi|119535443|gb|ABL80060.1| Peptidoglycan-binding domain 1 protein [Nocardioides sp. JS614] Length = 309 Score = 43.7 bits (102), Expect = 0.055, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%) Query: 95 PELPIRP--LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P L P L G+ V+ L+ RL + ++ + +AV+ FQ + + Sbjct: 95 PTLVPGPRLLGPGDQGDEVRDLQARLKQI--YWFNTDVTGVYGDVTATAVRGFQAKREIP 152 Query: 153 PSGMVDSSTLEAM 165 +G VD TL+ + Sbjct: 153 VTGEVDQRTLDRL 165 >gi|332974764|gb|EGK11680.1| spore cortex-lytic enzyme [Desmospora sp. 8437] Length = 234 Score = 43.7 bits (102), Expect = 0.056, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 3/63 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 H G+ + V L+ RL G + E V FQ H L G+ + T Sbjct: 36 HYGSKNGDVWDLQARLNKLGY---KTKRDGVYGLQTERQVIQFQKDHKLRIDGISGAQTW 92 Query: 163 EAM 165 + Sbjct: 93 GEL 95 >gi|89099115|ref|ZP_01171994.1| sporulation specific N-acetylmuramoyl-L-alanine amidase (spore cortex-lytic enzyme) [Bacillus sp. NRRL B-14911] gi|89086245|gb|EAR65367.1| sporulation specific N-acetylmuramoyl-L-alanine amidase (spore cortex-lytic enzyme) [Bacillus sp. NRRL B-14911] Length = 285 Score = 43.7 bits (102), Expect = 0.056, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G V L+ RL G + + F A++ FQ GL G Sbjct: 32 AFSAQVIQHGAVGDDVIELQSRLQYLGFYNG--KIDGVFGWGTYWALRNFQYEFGLPIDG 89 Query: 156 MVDSSTLEAM 165 + T + Sbjct: 90 LAGQETKAKL 99 >gi|196041668|ref|ZP_03108959.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus NVH0597-99] gi|196027437|gb|EDX66053.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus NVH0597-99] Length = 253 Score = 43.7 bits (102), Expect = 0.056, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|206971930|ref|ZP_03232879.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus AH1134] gi|206733315|gb|EDZ50488.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus AH1134] Length = 259 Score = 43.7 bits (102), Expect = 0.056, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|163790212|ref|ZP_02184645.1| phiSLT ORF484-like protein, lysin [Carnobacterium sp. AT7] gi|159874487|gb|EDP68558.1| phiSLT ORF484-like protein, lysin [Carnobacterium sp. AT7] Length = 337 Score = 43.7 bits (102), Expect = 0.056, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 14/40 (35%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 G+ + AV+ FQ +GL G T + Sbjct: 292 EKNGVDGWYGPLTVDAVERFQSVYGLTVDGTFGPKTRAKL 331 >gi|228953081|ref|ZP_04115141.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|112380305|gb|ABI16957.1| SleB [Bacillus thuringiensis serovar kurstaki] gi|228806587|gb|EEM53146.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 259 Score = 43.7 bits (102), Expect = 0.056, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|15966561|ref|NP_386914.1| putative membrane-bound lytic murein transglycosylase protein [Sinorhizobium meliloti 1021] gi|307300402|ref|ZP_07580182.1| lytic murein transglycosylase [Sinorhizobium meliloti BL225C] gi|307318267|ref|ZP_07597702.1| lytic murein transglycosylase [Sinorhizobium meliloti AK83] gi|15075832|emb|CAC47387.1| Membrane-bound lytic murein transglycosylase precursor [Sinorhizobium meliloti 1021] gi|306895949|gb|EFN26700.1| lytic murein transglycosylase [Sinorhizobium meliloti AK83] gi|306904568|gb|EFN35152.1| lytic murein transglycosylase [Sinorhizobium meliloti BL225C] Length = 405 Score = 43.7 bits (102), Expect = 0.056, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 9/88 (10%) Query: 78 TEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 IA Y + R WP P L + L+ RL G D + F + Sbjct: 325 LADQIAGYAGMQQR--WPR-PDGSLDISEKF----ELQNRLKELGYYDGEVDGN--FGSG 375 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++A++ FQ ++GL P G L A+ Sbjct: 376 SKAAIQAFQNQNGLAPDGEPTQHLLRAL 403 >gi|94986332|ref|YP_605696.1| peptidoglycan binding domain-containing protein [Deinococcus geothermalis DSM 11300] gi|94556613|gb|ABF46527.1| Peptidoglycan-binding domain 1 [Deinococcus geothermalis DSM 11300] Length = 251 Score = 43.7 bits (102), Expect = 0.056, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + V+ ++ RLI + + V+ FQ + L +G VD +T Sbjct: 175 TPRMNGADVRAVQNRLIALTRPSSGGQGDGWYGPVTAATVRAFQAANALPVTGRVDRATW 234 Query: 163 EAM 165 A+ Sbjct: 235 NAL 237 >gi|159028343|emb|CAO87241.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 166 Score = 43.7 bits (102), Expect = 0.057, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 48/156 (30%) Query: 193 LRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 +L+N+ + + K+ V +GR +TP R+ +++ P W P + Sbjct: 38 ETRLLLNLKKRRVFVYQGQKIIASYPVAIGRPGWETPTGQFRVIQMVREPVWEHPFT--- 94 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 ++ + +P + W + NF Sbjct: 95 GQLVPSGKNNPLGARWIGF----------------WT--DGANF---------------- 120 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 H TP+ L R + GCVR+R+ Sbjct: 121 --------IGFHGTPQENLIG---RAVSHGCVRMRD 145 >gi|149924298|ref|ZP_01912669.1| hypothetical protein PPSIR1_17095 [Plesiocystis pacifica SIR-1] gi|149814834|gb|EDM74401.1| hypothetical protein PPSIR1_17095 [Plesiocystis pacifica SIR-1] Length = 209 Score = 43.7 bits (102), Expect = 0.057, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Query: 101 PLHLG--NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L LG + + ++ RL G + L +A++ FQ + GL+ +G D Sbjct: 139 KLKLGHLDPHDTPSGVQHRLRALGYYFGA--LDADHGDRTAAALRRFQTKQGLEVTGEAD 196 Query: 159 SSTLEAM 165 +T+ A+ Sbjct: 197 DATMSAL 203 >gi|311741708|ref|ZP_07715530.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium pseudogenitalium ATCC 33035] gi|311303229|gb|EFQ79310.1| N-acetylmuramoyl-L-alanine amidase [Corynebacterium pseudogenitalium ATCC 33035] Length = 382 Score = 43.7 bits (102), Expect = 0.057, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 12/68 (17%) Query: 110 SVQRLRERLIISGDLDPSKGL------------SVAFDAYVESAVKLFQMRHGLDPSGMV 157 V R L G L KG +FDA + +K FQ G+ P+G + Sbjct: 2 RVAEARATLARLGLLSDFKGELSAWKKQKYSESDKSFDANLSEVLKAFQQSRGIVPTGEI 61 Query: 158 DSSTLEAM 165 D TL + Sbjct: 62 DDLTLREL 69 Score = 41.0 bits (95), Expect = 0.38, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 5/80 (6%) Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 G + + F +A+K +Q GL G+ +T+ A+ + N+ Sbjct: 104 LGFY--QQRVDGHFGTNTHAALKEYQHNCGLQEDGVCGPATIRALGLLGRRITGGSAHNI 161 Query: 181 ---MRIKKLLEQKMGLRYVL 197 R++ + G R V+ Sbjct: 162 QERERVRNAGPKLAGKRVVI 181 >gi|182419910|ref|ZP_02951147.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237668684|ref|ZP_04528668.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376279|gb|EDT73863.1| conserved hypothetical protein [Clostridium butyricum 5521] gi|237657032|gb|EEP54588.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 465 Score = 43.7 bits (102), Expect = 0.058, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 21/42 (50%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + +G YV VNI L +NGK+ + ++ G + TP Sbjct: 332 DDDIGDTYVEVNITRQHLWFYKNGKLLTQGDIVTGCQSKNTP 373 >gi|118478116|ref|YP_895267.1| spore cortex-lytic enzyme [Bacillus thuringiensis str. Al Hakam] gi|196043628|ref|ZP_03110866.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus 03BB108] gi|225864724|ref|YP_002750102.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus 03BB102] gi|228934029|ref|ZP_04096872.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229184969|ref|ZP_04312159.1| Spore cortex-lytic enzyme [Bacillus cereus BGSC 6E1] gi|118417341|gb|ABK85760.1| spore cortex-lytic enzyme [Bacillus thuringiensis str. Al Hakam] gi|196025937|gb|EDX64606.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus 03BB108] gi|225788886|gb|ACO29103.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus 03BB102] gi|228598444|gb|EEK56074.1| Spore cortex-lytic enzyme [Bacillus cereus BGSC 6E1] gi|228825725|gb|EEM71515.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 253 Score = 43.7 bits (102), Expect = 0.058, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|186686453|ref|YP_001869649.1| hypothetical protein Npun_F6437 [Nostoc punctiforme PCC 73102] gi|186468905|gb|ACC84706.1| hypothetical protein Npun_F6437 [Nostoc punctiforme PCC 73102] Length = 521 Score = 43.7 bits (102), Expect = 0.058, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 16/97 (16%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM----RHGLDPSGM--VDS 159 N S V+ ++ RL G S D + A+KLFQ R ++ G V Sbjct: 292 NKSADVKAIKGRLYELGYKWVGDPDSADRDRGLFDAIKLFQSIIAGRSTVNGDGRVDVGG 351 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 T + N R + + + V Sbjct: 352 ITHRWLQ----------AANAPRWELMPKSDPNNGLV 378 >gi|225427043|ref|XP_002267238.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 370 Score = 43.7 bits (102), Expect = 0.058, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 105 GNSSVSVQRLRERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ + L++ G L P+ + FD+ E+AV ++Q + GL SG +DS T+ Sbjct: 53 GSQVSGMSELKKYFQRFGYLPVPNTNFTDVFDSRFETAVIMYQTKLGLPVSGKLDSKTIT 112 Query: 164 AMNVP 168 A+ P Sbjct: 113 AIVSP 117 >gi|261420536|ref|YP_003254218.1| carboxyl-terminal protease [Geobacillus sp. Y412MC61] gi|297531348|ref|YP_003672623.1| carboxyl-terminal protease [Geobacillus sp. C56-T3] gi|319768205|ref|YP_004133706.1| carboxyl-terminal protease [Geobacillus sp. Y412MC52] gi|261376993|gb|ACX79736.1| carboxyl-terminal protease [Geobacillus sp. Y412MC61] gi|297254600|gb|ADI28046.1| carboxyl-terminal protease [Geobacillus sp. C56-T3] gi|317113071|gb|ADU95563.1| carboxyl-terminal protease [Geobacillus sp. Y412MC52] Length = 482 Score = 43.7 bits (102), Expect = 0.058, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +PL + + ++ L G +P + F E AV+ FQ + L +G +D Sbjct: 392 KPLRYDMNDEQIANAQKMLKGLGF-NPGRTDG-YFSKETEQAVQAFQKANQLPVTGRIDE 449 Query: 160 STLEAM 165 +T + + Sbjct: 450 TTADVL 455 >gi|194100645|ref|YP_002003394.1| gp36 [Mycobacterium phage Predator] gi|192758361|gb|ACF05133.1| gp36 [Mycobacterium phage Predator] Length = 318 Score = 43.7 bits (102), Expect = 0.058, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 7/85 (8%) Query: 88 ILSRGGWPE-----LPIRPLHLGNSSVSVQRLRERLI-ISGDLDPSKGLSV-AFDAYVES 140 I + GG P P L +G++ V L++++ + G+ F + Sbjct: 158 IWAPGGAPTDPPANTPDGYLQIGSTGDQVLYLQQKMNKVFGNYKAMPLDEDGIFGPMTAN 217 Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAM 165 AV FQ R + G+V T + + Sbjct: 218 AVSEFQSRSLISVDGIVGPETKKRL 242 >gi|160944034|ref|ZP_02091264.1| hypothetical protein FAEPRAM212_01535 [Faecalibacterium prausnitzii M21/2] gi|158444710|gb|EDP21714.1| hypothetical protein FAEPRAM212_01535 [Faecalibacterium prausnitzii M21/2] Length = 227 Score = 43.7 bits (102), Expect = 0.058, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 2/51 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + L+ L + F +AVK+FQ GLD G V T Sbjct: 171 ISTLQAHLQSLAY--DTGTADGIFGPKTTAAVKMFQKYMGLDADGKVGPKT 219 >gi|319778023|ref|YP_004134453.1| beta-lactamase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171742|gb|ADV15279.1| beta-lactamase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 720 Score = 43.7 bits (102), Expect = 0.059, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 4/72 (5%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V L+ L + + F + SAVK FQ +G+ G V T A+ + Sbjct: 73 DRRVALLQSVLTDKSVY--ASAIDGVFGSQTASAVKSFQSTYGMPVDGTVGMQTGSALGL 130 Query: 168 PVDL--RIRQLQ 177 P + R L Sbjct: 131 PFWQANKARSLA 142 >gi|262371387|ref|ZP_06064705.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter johnsonii SH046] gi|262313724|gb|EEY94773.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter johnsonii SH046] Length = 345 Score = 43.7 bits (102), Expect = 0.059, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 41/151 (27%), Gaps = 46/151 (30%) Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 K+ +G D +P I I+FNP+ +++ Sbjct: 228 RQNKIIASFPATIGSEDNPSPTGTHAIGSIVFNPH---------YSYNPK-----NFIQG 273 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR-NNTYMHDTP 327 N+ PG N + + I H TP Sbjct: 274 KNLK------------------------PLSLPPGPNNPVGNIWIGLSRPSFGI--HGTP 307 Query: 328 EPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 P L + + GC+R+ N +L L Sbjct: 308 NPALISKTA---SHGCIRLTNWDANNLAKVL 335 >gi|205373812|ref|ZP_03226614.1| spore cortex-lytic enzyme [Bacillus coahuilensis m4-4] Length = 319 Score = 43.7 bits (102), Expect = 0.059, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V L+ RL G + + F AV+ FQ G++ G V T Sbjct: 41 GAVGEDVVELQARLQYIGFYNG--KIDGVFGWGTYWAVRNFQYEFGMEVDGFVGEETKNK 98 Query: 165 M 165 + Sbjct: 99 L 99 >gi|196032602|ref|ZP_03100016.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus W] gi|218903872|ref|YP_002451706.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus AH820] gi|228927802|ref|ZP_04090850.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228946365|ref|ZP_04108687.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229122301|ref|ZP_04251515.1| Spore cortex-lytic enzyme [Bacillus cereus 95/8201] gi|195995353|gb|EDX59307.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus W] gi|218539399|gb|ACK91797.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus AH820] gi|228661150|gb|EEL16776.1| Spore cortex-lytic enzyme [Bacillus cereus 95/8201] gi|228813291|gb|EEM59590.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228831865|gb|EEM77454.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 253 Score = 43.7 bits (102), Expect = 0.059, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|218531762|ref|YP_002422578.1| peptidoglycan-binding protein [Methylobacterium chloromethanicum CM4] gi|218524065|gb|ACK84650.1| Peptidoglycan-binding domain 1 protein [Methylobacterium chloromethanicum CM4] Length = 233 Score = 43.7 bits (102), Expect = 0.059, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 20/55 (36%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V ++ L+ G S G+ +A+ FQ GL G+ T + Sbjct: 4 VAEIQRALLARGYDLGSSGVDGDAGPRTIAALTAFQRLAGLVADGIAGPRTQAVL 58 >gi|324326719|gb|ADY21979.1| spore cortex-lytic enzyme [Bacillus thuringiensis serovar finitimus YBT-020] Length = 253 Score = 43.7 bits (102), Expect = 0.060, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|229091754|ref|ZP_04222954.1| Spore cortex-lytic enzyme [Bacillus cereus Rock3-42] gi|228691582|gb|EEL45335.1| Spore cortex-lytic enzyme [Bacillus cereus Rock3-42] Length = 253 Score = 43.7 bits (102), Expect = 0.060, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|194016960|ref|ZP_03055573.1| spore cortex-lytic enzyme [Bacillus pumilus ATCC 7061] gi|194011566|gb|EDW21135.1| spore cortex-lytic enzyme [Bacillus pumilus ATCC 7061] Length = 303 Score = 43.7 bits (102), Expect = 0.060, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 3/71 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPS 154 + + G + V L+ RL +G + + + AV+ FQ ++G+ Sbjct: 31 AFTSQVIQRGATGEDVVELQARLQYNGFYNG--KIDGVYGWGTYWAVRNFQSQYGVKKVD 88 Query: 155 GMVDSSTLEAM 165 G+V T + Sbjct: 89 GLVGKQTKSLL 99 >gi|329928740|ref|ZP_08282589.1| peptidase, S41 family [Paenibacillus sp. HGF5] gi|328937521|gb|EGG33939.1| peptidase, S41 family [Paenibacillus sp. HGF5] Length = 490 Score = 43.7 bits (102), Expect = 0.060, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%) Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G + FD E AVK FQ +H L G++ Sbjct: 409 MLEAVGY--AAGRTDGYFDRNTEKAVKSFQSKHKLKADGII 447 >gi|282931884|ref|ZP_06337363.1| NlpC/P60 family protein [Lactobacillus jensenii 208-1] gi|281303995|gb|EFA96118.1| NlpC/P60 family protein [Lactobacillus jensenii 208-1] Length = 736 Score = 43.7 bits (102), Expect = 0.060, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 16/84 (19%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQ--RLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y I P + +LG + V+ + RL G ++ +A Sbjct: 501 QYNQIQ-----PSIYAPGYNLGYNYEGVKTWLVMRRL---GTYAGYAN----YNWATVNA 548 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAM 165 VK FQ HGL+P+G+VD +T + Sbjct: 549 VKNFQASHGLNPTGIVDLAT--WL 570 >gi|261409610|ref|YP_003245851.1| carboxyl-terminal protease [Paenibacillus sp. Y412MC10] gi|261286073|gb|ACX68044.1| carboxyl-terminal protease [Paenibacillus sp. Y412MC10] Length = 490 Score = 43.7 bits (102), Expect = 0.060, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 2/41 (4%) Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G + FD E AVK FQ +H L G++ Sbjct: 409 MLEAVGY--AAGRTDGYFDRNTEKAVKSFQSKHKLKADGII 447 >gi|229030433|ref|ZP_04186473.1| Spore cortex-lytic enzyme [Bacillus cereus AH1271] gi|228730872|gb|EEL81812.1| Spore cortex-lytic enzyme [Bacillus cereus AH1271] Length = 259 Score = 43.7 bits (102), Expect = 0.060, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|229097273|ref|ZP_04228235.1| Spore cortex-lytic enzyme [Bacillus cereus Rock3-29] gi|228686084|gb|EEL40000.1| Spore cortex-lytic enzyme [Bacillus cereus Rock3-29] Length = 259 Score = 43.7 bits (102), Expect = 0.060, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|297205125|ref|ZP_06922521.1| periplasmic protease [Lactobacillus jensenii JV-V16] gi|297149703|gb|EFH30000.1| periplasmic protease [Lactobacillus jensenii JV-V16] Length = 638 Score = 43.7 bits (102), Expect = 0.060, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 16/84 (19%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQ--RLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y I P + +LG + V+ + RL G ++ +A Sbjct: 403 QYNQIQ-----PSIYAPGYNLGYNYEGVKTWLVMRRL---GTYAGYAN----YNWATVNA 450 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAM 165 VK FQ HGL+P+G+VD +T + Sbjct: 451 VKNFQASHGLNPTGIVDLAT--WL 472 >gi|42781838|ref|NP_979085.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus ATCC 10987] gi|206973778|ref|ZP_03234696.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus H3081.97] gi|217960192|ref|YP_002338752.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus AH187] gi|222096255|ref|YP_002530312.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus Q1] gi|229139388|ref|ZP_04267959.1| Spore cortex-lytic enzyme [Bacillus cereus BDRD-ST26] gi|42737762|gb|AAS41693.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus ATCC 10987] gi|206747934|gb|EDZ59323.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus H3081.97] gi|217063319|gb|ACJ77569.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus AH187] gi|221240313|gb|ACM13023.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus Q1] gi|228643935|gb|EEL00196.1| Spore cortex-lytic enzyme [Bacillus cereus BDRD-ST26] Length = 259 Score = 43.7 bits (102), Expect = 0.060, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|229045449|ref|ZP_04192106.1| Spore cortex-lytic enzyme [Bacillus cereus AH676] gi|296503296|ref|YP_003664996.1| cell wall hydrolase CwlJ [Bacillus thuringiensis BMB171] gi|228724891|gb|EEL76191.1| Spore cortex-lytic enzyme [Bacillus cereus AH676] gi|296324348|gb|ADH07276.1| cell wall hydrolase cwlJ [Bacillus thuringiensis BMB171] Length = 259 Score = 43.7 bits (102), Expect = 0.061, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|229110200|ref|ZP_04239774.1| Spore cortex-lytic enzyme [Bacillus cereus Rock1-15] gi|228673186|gb|EEL28456.1| Spore cortex-lytic enzyme [Bacillus cereus Rock1-15] Length = 259 Score = 43.7 bits (102), Expect = 0.061, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|30262721|ref|NP_845098.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. Ames] gi|47528039|ref|YP_019388.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. 'Ames Ancestor'] gi|49185569|ref|YP_028821.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. Sterne] gi|49479156|ref|YP_036844.1| spore cortex-lytic enzyme [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65320051|ref|ZP_00393010.1| COG3773: Cell wall hydrolyses involved in spore germination [Bacillus anthracis str. A2012] gi|165868424|ref|ZP_02213084.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0488] gi|167631745|ref|ZP_02390072.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0442] gi|167637623|ref|ZP_02395902.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0193] gi|170685440|ref|ZP_02876664.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0465] gi|170704742|ref|ZP_02895208.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0389] gi|177649478|ref|ZP_02932480.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0174] gi|190565234|ref|ZP_03018154.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis Tsiankovskii-I] gi|227814439|ref|YP_002814448.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. CDC 684] gi|228915357|ref|ZP_04078950.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229601515|ref|YP_002867030.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0248] gi|254685313|ref|ZP_05149173.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. CNEVA-9066] gi|254722722|ref|ZP_05184510.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A1055] gi|254737769|ref|ZP_05195472.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. Western North America USA6153] gi|254743057|ref|ZP_05200742.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. Kruger B] gi|254752083|ref|ZP_05204120.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. Vollum] gi|254760604|ref|ZP_05212628.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. Australia 94] gi|301054274|ref|YP_003792485.1| spore cortex-lytic enzyme [Bacillus anthracis CI] gi|30257353|gb|AAP26584.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. Ames] gi|47503187|gb|AAT31863.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. 'Ames Ancestor'] gi|49179496|gb|AAT54872.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. Sterne] gi|49330712|gb|AAT61358.1| spore cortex-lytic enzyme [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164715150|gb|EDR20667.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0488] gi|167514172|gb|EDR89539.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0193] gi|167532043|gb|EDR94679.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0442] gi|170130543|gb|EDS99404.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0389] gi|170670800|gb|EDT21539.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0465] gi|172084552|gb|EDT69610.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0174] gi|190563261|gb|EDV17226.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis Tsiankovskii-I] gi|227002927|gb|ACP12670.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. CDC 684] gi|228844300|gb|EEM89358.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265923|gb|ACQ47560.1| spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. A0248] gi|300376443|gb|ADK05347.1| spore cortex-lytic enzyme [Bacillus cereus biovar anthracis str. CI] Length = 253 Score = 43.7 bits (102), Expect = 0.061, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|269796068|ref|YP_003315523.1| hypothetical protein Sked_27870 [Sanguibacter keddieii DSM 10542] gi|269098253|gb|ACZ22689.1| hypothetical protein Sked_27870 [Sanguibacter keddieii DSM 10542] Length = 515 Score = 43.7 bits (102), Expect = 0.061, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 88 ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 I G P R L +G S V +L++ L G ++P S +DA +AV Sbjct: 122 IALPGELPA--YRTLRVGVSGPDVLQLKQALAALG-INPGNVESDVYDAATVAAV 173 >gi|30020874|ref|NP_832505.1| cell wall hydrolase cwlJ [Bacillus cereus ATCC 14579] gi|218234005|ref|YP_002367468.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus B4264] gi|228921423|ref|ZP_04084746.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228939871|ref|ZP_04102448.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972761|ref|ZP_04133360.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979345|ref|ZP_04139681.1| Spore cortex-lytic enzyme [Bacillus thuringiensis Bt407] gi|228985846|ref|ZP_04145995.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229070227|ref|ZP_04203479.1| Spore cortex-lytic enzyme [Bacillus cereus F65185] gi|229079940|ref|ZP_04212471.1| Spore cortex-lytic enzyme [Bacillus cereus Rock4-2] gi|229103362|ref|ZP_04234044.1| Spore cortex-lytic enzyme [Bacillus cereus Rock3-28] gi|229116269|ref|ZP_04245659.1| Spore cortex-lytic enzyme [Bacillus cereus Rock1-3] gi|229128092|ref|ZP_04257074.1| Spore cortex-lytic enzyme [Bacillus cereus BDRD-Cer4] gi|229145328|ref|ZP_04273717.1| Spore cortex-lytic enzyme [Bacillus cereus BDRD-ST24] gi|229156330|ref|ZP_04284426.1| Spore cortex-lytic enzyme [Bacillus cereus ATCC 4342] gi|229179035|ref|ZP_04306392.1| Spore cortex-lytic enzyme [Bacillus cereus 172560W] gi|229190847|ref|ZP_04317839.1| Spore cortex-lytic enzyme [Bacillus cereus ATCC 10876] gi|61242533|sp|P0A3V0|SLEB_BACCR RecName: Full=Spore cortex-lytic enzyme; Short=SCLE; AltName: Full=Germination-specific amidase; Flags: Precursor gi|61242541|sp|P0A3V1|SLEB_BACCE RecName: Full=Spore cortex-lytic enzyme; Short=SCLE; AltName: Full=Germination-specific amidase; Flags: Precursor gi|1644192|dbj|BAA09800.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus] gi|29896427|gb|AAP09706.1| Cell wall hydrolase cwlJ [Bacillus cereus ATCC 14579] gi|218161962|gb|ACK61954.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus B4264] gi|228592637|gb|EEK50464.1| Spore cortex-lytic enzyme [Bacillus cereus ATCC 10876] gi|228604403|gb|EEK61867.1| Spore cortex-lytic enzyme [Bacillus cereus 172560W] gi|228627205|gb|EEK83936.1| Spore cortex-lytic enzyme [Bacillus cereus ATCC 4342] gi|228638167|gb|EEK94608.1| Spore cortex-lytic enzyme [Bacillus cereus BDRD-ST24] gi|228655367|gb|EEL11223.1| Spore cortex-lytic enzyme [Bacillus cereus BDRD-Cer4] gi|228667101|gb|EEL22553.1| Spore cortex-lytic enzyme [Bacillus cereus Rock1-3] gi|228679858|gb|EEL34053.1| Spore cortex-lytic enzyme [Bacillus cereus Rock3-28] gi|228703319|gb|EEL55774.1| Spore cortex-lytic enzyme [Bacillus cereus Rock4-2] gi|228712890|gb|EEL64813.1| Spore cortex-lytic enzyme [Bacillus cereus F65185] gi|228773881|gb|EEM22298.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228780349|gb|EEM28580.1| Spore cortex-lytic enzyme [Bacillus thuringiensis Bt407] gi|228786976|gb|EEM34956.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819802|gb|EEM65850.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228838196|gb|EEM83514.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|312828406|emb|CBY16475.1| SceA protein [Bacillus thuringiensis serovar kurstaki str. YBT-1520] gi|326940519|gb|AEA16415.1| cell wall hydrolase cwlJ [Bacillus thuringiensis serovar chinensis CT-43] Length = 259 Score = 43.7 bits (102), Expect = 0.061, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|228901287|ref|ZP_04065483.1| Spore cortex-lytic enzyme [Bacillus thuringiensis IBL 4222] gi|228858352|gb|EEN02816.1| Spore cortex-lytic enzyme [Bacillus thuringiensis IBL 4222] Length = 253 Score = 43.7 bits (102), Expect = 0.062, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|119512604|ref|ZP_01631680.1| Peptidoglycan-binding domain 1 [Nodularia spumigena CCY9414] gi|119462737|gb|EAW43698.1| Peptidoglycan-binding domain 1 [Nodularia spumigena CCY9414] Length = 394 Score = 43.7 bits (102), Expect = 0.062, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSS 160 L G+ V+RL+ +L G + + + ++AV FQ L G+ D + Sbjct: 50 LIPGSRGADVKRLQTKLKDLGYYNSE--IDGLYGPDTQNAVVQFQKFRNLGRTDGVADLT 107 Query: 161 TLEAM 165 T ++ Sbjct: 108 TRNSL 112 >gi|47569014|ref|ZP_00239704.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus G9241] gi|47554283|gb|EAL12644.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus G9241] Length = 259 Score = 43.7 bits (102), Expect = 0.062, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|83313131|ref|YP_423395.1| hypothetical protein amb4032 [Magnetospirillum magneticum AMB-1] gi|82947972|dbj|BAE52836.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 185 Score = 43.7 bits (102), Expect = 0.062, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 15/92 (16%) Query: 103 HLGNSSVS----VQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGM 156 +G+S + V ++ + G DP GL+ D + +K FQ H L+ G+ Sbjct: 8 TIGSSYPADPGDVLNVKTSMNNLGYYDPPAAYGLTPWPDTPMFDGIKNFQKDHDLEVDGI 67 Query: 157 VDSS--TLEAMNV-------PVDLRIRQLQVN 179 + T+ MN QL N Sbjct: 68 MHPDGPTVTTMNKGLAQGEDSPSDGNEQLAYN 99 >gi|229150962|ref|ZP_04279173.1| Spore cortex-lytic enzyme [Bacillus cereus m1550] gi|228632522|gb|EEK89140.1| Spore cortex-lytic enzyme [Bacillus cereus m1550] Length = 259 Score = 43.7 bits (102), Expect = 0.063, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|218897774|ref|YP_002446185.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus G9842] gi|228908491|ref|ZP_04072332.1| Spore cortex-lytic enzyme [Bacillus thuringiensis IBL 200] gi|218545433|gb|ACK97827.1| spore cortex-lytic enzyme prepeptide [Bacillus cereus G9842] gi|228851138|gb|EEM95951.1| Spore cortex-lytic enzyme [Bacillus thuringiensis IBL 200] Length = 253 Score = 43.7 bits (102), Expect = 0.063, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|228958984|ref|ZP_04120685.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar pakistani str. T13001] gi|229196921|ref|ZP_04323662.1| Spore cortex-lytic enzyme [Bacillus cereus m1293] gi|228586644|gb|EEK44721.1| Spore cortex-lytic enzyme [Bacillus cereus m1293] gi|228800645|gb|EEM47561.1| Spore cortex-lytic enzyme [Bacillus thuringiensis serovar pakistani str. T13001] Length = 239 Score = 43.7 bits (102), Expect = 0.063, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 18 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 75 Query: 162 LEAM 165 + + Sbjct: 76 KQML 79 >gi|157278505|ref|NP_001098354.1| membrane-type matrix metalloproteinase [Oryzias latipes] gi|46359591|dbj|BAD15298.1| membrane-type matrix metalloproteinase [Oryzias latipes] Length = 607 Score = 43.7 bits (102), Expect = 0.063, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L + G L P+ + ++SA+ Q R+GL+ +G +DS+T+E M P Sbjct: 45 LQMYGYLPPADPRMAVLRSAKVMQSAIAAMQRRYGLNVTGTLDSNTIEWMRQP 97 >gi|52142756|ref|YP_084072.1| spore cortex-lytic enzyme [Bacillus cereus E33L] gi|51976225|gb|AAU17775.1| spore cortex-lytic enzyme [Bacillus cereus E33L] Length = 253 Score = 43.7 bits (102), Expect = 0.063, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|225028427|ref|ZP_03717619.1| hypothetical protein EUBHAL_02701 [Eubacterium hallii DSM 3353] gi|224954271|gb|EEG35480.1| hypothetical protein EUBHAL_02701 [Eubacterium hallii DSM 3353] Length = 198 Score = 43.7 bits (102), Expect = 0.064, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 11/92 (11%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G S V++++E+L +I+GD P + + ++VK+FQ L + Sbjct: 114 PGYELTIGASGQKVRQMQEQLNVIAGDYPLIPKIRVDGIYGPATANSVKIFQKIFHLPET 173 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKL 186 G+VD +T +I Q+ V + RI +L Sbjct: 174 GVVDFATWY--------KISQIYVAVSRIAEL 197 >gi|330468307|ref|YP_004406050.1| peptidoglycan-binding domain 1 protein [Verrucosispora maris AB-18-032] gi|328811278|gb|AEB45450.1| peptidoglycan-binding domain 1 protein [Verrucosispora maris AB-18-032] Length = 336 Score = 43.7 bits (102), Expect = 0.064, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P+L R L G++ V+ L+ ++G L + F E+ V+ FQ L Sbjct: 184 PKLGDRVLRRGSTGSDVRELQT---LAGRLGGDLAVDGDFGPRTETWVRDFQKAQRLTVD 240 Query: 155 GMVDSS 160 G+V + Sbjct: 241 GVVGAQ 246 Score = 41.4 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 19/39 (48%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + +FDA ES V+ +Q G+ G+V T M V Sbjct: 294 PATGSFDAKTESGVRWYQGMRGITVDGVVGPLTWRQMGV 332 >gi|229085545|ref|ZP_04217781.1| Spore cortex-lytic enzyme [Bacillus cereus Rock3-44] gi|228697766|gb|EEL50515.1| Spore cortex-lytic enzyme [Bacillus cereus Rock3-44] Length = 252 Score = 43.7 bits (102), Expect = 0.065, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ S T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQQKFGLPVDGLAGSKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|254469425|ref|ZP_05082830.1| secretion activator protein [Pseudovibrio sp. JE062] gi|211961260|gb|EEA96455.1| secretion activator protein [Pseudovibrio sp. JE062] Length = 260 Score = 43.7 bits (102), Expect = 0.065, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 21/125 (16%) Query: 119 IISGDLDPSKGLSVAFDAYV----ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV----- 169 + GD P FD V AVK QM G+ G++ TL A+ Sbjct: 75 AVQGDRLPLGLDYALFDFAVNSGPARAVKTLQMILGVGVDGVIGLKTLAAIKQRPVIYLV 134 Query: 170 -DLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 +L ++L + R++ K G + ++ SL+ +EN GR + Sbjct: 135 NELSAQRLAF-MKRLRNWPYNKNGWSRRVRDVQEKSLKLMENS----------GRQKQPL 183 Query: 229 PILHS 233 P+L Sbjct: 184 PVLDG 188 >gi|328880761|emb|CCA54000.1| hypothetical protein SVEN_0713 [Streptomyces venezuelae ATCC 10712] Length = 137 Score = 43.7 bits (102), Expect = 0.066, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHG 150 W ++P L G+S V V+ L++ L+ +G + + +F +AV FQ R G Sbjct: 55 W-DIPTVVLAKGSSGVCVRGLQDALLEAGAVRAEDQPGFVDGSFGPKTYNAVVAFQRRAG 113 Query: 151 LD--PSGMVDSSTLEAM 165 + G+V T + Sbjct: 114 VTGGADGVVGRYTWHHL 130 >gi|314938218|ref|ZP_07845518.1| ErfK/YbiS/YcfS/YnhG [Enterococcus faecium TX0133a04] gi|314943113|ref|ZP_07849912.1| ErfK/YbiS/YcfS/YnhG [Enterococcus faecium TX0133C] gi|314949310|ref|ZP_07852653.1| ErfK/YbiS/YcfS/YnhG [Enterococcus faecium TX0082] gi|314952244|ref|ZP_07855259.1| ErfK/YbiS/YcfS/YnhG [Enterococcus faecium TX0133A] gi|314992102|ref|ZP_07857552.1| ErfK/YbiS/YcfS/YnhG [Enterococcus faecium TX0133B] gi|314996284|ref|ZP_07861340.1| ErfK/YbiS/YcfS/YnhG [Enterococcus faecium TX0133a01] gi|313589528|gb|EFR68373.1| ErfK/YbiS/YcfS/YnhG [Enterococcus faecium TX0133a01] gi|313593316|gb|EFR72161.1| ErfK/YbiS/YcfS/YnhG [Enterococcus faecium TX0133B] gi|313595639|gb|EFR74484.1| ErfK/YbiS/YcfS/YnhG [Enterococcus faecium TX0133A] gi|313598172|gb|EFR77017.1| ErfK/YbiS/YcfS/YnhG [Enterococcus faecium TX0133C] gi|313642414|gb|EFS06994.1| ErfK/YbiS/YcfS/YnhG [Enterococcus faecium TX0133a04] gi|313644316|gb|EFS08896.1| ErfK/YbiS/YcfS/YnhG [Enterococcus faecium TX0082] Length = 426 Score = 43.7 bits (102), Expect = 0.066, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 Y+ V++ + ++GKV L + ++ G+ TP Sbjct: 301 EDTYIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTP 338 >gi|293553689|ref|ZP_06674313.1| hypothetical protein EfmE1039_1055 [Enterococcus faecium E1039] gi|291602264|gb|EFF32492.1| hypothetical protein EfmE1039_1055 [Enterococcus faecium E1039] Length = 466 Score = 43.7 bits (102), Expect = 0.066, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 Y+ V++ + ++GKV L + ++ G+ TP Sbjct: 341 EDTYIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTP 378 >gi|293570112|ref|ZP_06681192.1| beta-lactam-insensitive peptidoglycan transpeptidase [Enterococcus faecium E1071] gi|291587484|gb|EFF19368.1| beta-lactam-insensitive peptidoglycan transpeptidase [Enterococcus faecium E1071] Length = 466 Score = 43.7 bits (102), Expect = 0.066, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 Y+ V++ + ++GKV L + ++ G+ TP Sbjct: 341 EDTYIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTP 378 >gi|261206675|ref|ZP_05921373.1| erfK/ybiS/ycfS/ynhG family protein [Enterococcus faecium TC 6] gi|289565036|ref|ZP_06445490.1| ErfK family protein [Enterococcus faecium D344SRF] gi|294614903|ref|ZP_06694794.1| ErfK/YbiS/YcfS/YnhG family [Enterococcus faecium E1636] gi|260079168|gb|EEW66861.1| erfK/ybiS/ycfS/ynhG family protein [Enterococcus faecium TC 6] gi|289163243|gb|EFD11089.1| ErfK family protein [Enterococcus faecium D344SRF] gi|291592189|gb|EFF23807.1| ErfK/YbiS/YcfS/YnhG family [Enterococcus faecium E1636] Length = 466 Score = 43.7 bits (102), Expect = 0.066, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 Y+ V++ + ++GKV L + ++ G+ TP Sbjct: 341 EDTYIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTP 378 >gi|257886025|ref|ZP_05665678.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus faecium 1,231,501] gi|257821881|gb|EEV49011.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus faecium 1,231,501] Length = 466 Score = 43.7 bits (102), Expect = 0.066, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 Y+ V++ + ++GKV L + ++ G+ TP Sbjct: 341 EDTYIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTP 378 >gi|218847877|ref|YP_002454610.1| N-acetylmuramoyl-L-alanine amidase CwlA [Bacillus cereus G9842] gi|218546379|gb|ACK98771.1| N-acetylmuramoyl-L-alanine amidase CwlA [Bacillus cereus G9842] Length = 364 Score = 43.7 bits (102), Expect = 0.066, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 4/74 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMRHGL 151 LP L G+S SV+ +++ L P+ G + +AV FQ + Sbjct: 285 TLPDGVLKKGSSGESVRAVQKALTSVYFYPDKSAPNYGCDGFYGDKTVNAVYRFQSVYCS 344 Query: 152 DPSGMVDSSTLEAM 165 + G+ T + Sbjct: 345 NADGIYGPETKRKL 358 >gi|16080577|ref|NP_391404.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus subtilis subsp. subtilis str. 168] gi|221311474|ref|ZP_03593321.1| hypothetical protein Bsubs1_19066 [Bacillus subtilis subsp. subtilis str. 168] gi|221315801|ref|ZP_03597606.1| hypothetical protein BsubsN3_18982 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320716|ref|ZP_03602010.1| hypothetical protein BsubsJ_18945 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325001|ref|ZP_03606295.1| hypothetical protein BsubsS_19101 [Bacillus subtilis subsp. subtilis str. SMY] gi|321313070|ref|YP_004205357.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus subtilis BSn5] gi|81669165|sp|O35002|CTPB_BACSU RecName: Full=Carboxy-terminal processing protease CtpB; Short=C-terminal processing protease; Flags: Precursor gi|2618834|gb|AAC67263.1| putative protease [Bacillus subtilis] gi|2636050|emb|CAB15541.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus subtilis subsp. subtilis str. 168] gi|148356709|dbj|BAF63027.1| serine protease [Bacillus subtilis subsp. natto] gi|320019344|gb|ADV94330.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus subtilis BSn5] Length = 480 Score = 43.7 bits (102), Expect = 0.066, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 23/112 (20%) Query: 82 IAFYQDILSRGGW-------PELPIR--------------PLHLGNSSVSVQRLRERLII 120 + Y+ + G W P + I+ PL + ++ V+ + L+ Sbjct: 351 LTLYKWLTPNGNWIHKKGIEPTIAIKQPDYFSAGPLQLKEPLKVDMNNEDVKH-AQVLLK 409 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 DP + F ++ AV FQ ++ L+ +G++D+ T E +N ++ + Sbjct: 410 GLSFDPGREDG-YFSKDMKKAVMAFQDQNKLNKTGVIDTRTAETLNQQIEKK 460 >gi|237809403|ref|YP_002893843.1| Peptidoglycan-binding domain 1 protein [Tolumonas auensis DSM 9187] gi|237501664|gb|ACQ94257.1| Peptidoglycan-binding domain 1 protein [Tolumonas auensis DSM 9187] Length = 542 Score = 43.7 bits (102), Expect = 0.067, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 18/40 (45%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 P + FDA + V+ FQ + GL G+ TL + Sbjct: 469 PVRNKVSRFDAQLTDKVRQFQKQEGLVEDGVAGEQTLLRL 508 >gi|69245440|ref|ZP_00603435.1| ErfK/YbiS/YcfS/YnhG [Enterococcus faecium DO] gi|257879851|ref|ZP_05659504.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus faecium 1,230,933] gi|257882577|ref|ZP_05662230.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus faecium 1,231,502] gi|257891692|ref|ZP_05671345.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus faecium 1,231,410] gi|257894167|ref|ZP_05673820.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus faecium 1,231,408] gi|260559524|ref|ZP_05831705.1| erfK/ybiS/ycfS/ynhG family protein [Enterococcus faecium C68] gi|293563190|ref|ZP_06677646.1| beta-lactam-insensitive peptidoglycan transpeptidase [Enterococcus faecium E1162] gi|294618625|ref|ZP_06698164.1| putative peptidoglycan binding protein [Enterococcus faecium E1679] gi|294623701|ref|ZP_06702534.1| Peptidoglycan binding protein [Enterococcus faecium U0317] gi|68195822|gb|EAN10258.1| ErfK/YbiS/YcfS/YnhG [Enterococcus faecium DO] gi|257814079|gb|EEV42837.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus faecium 1,230,933] gi|257818235|gb|EEV45563.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus faecium 1,231,502] gi|257828052|gb|EEV54678.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus faecium 1,231,410] gi|257830546|gb|EEV57153.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus faecium 1,231,408] gi|260074623|gb|EEW62944.1| erfK/ybiS/ycfS/ynhG family protein [Enterococcus faecium C68] gi|291595144|gb|EFF26482.1| putative peptidoglycan binding protein [Enterococcus faecium E1679] gi|291596916|gb|EFF28134.1| Peptidoglycan binding protein [Enterococcus faecium U0317] gi|291604840|gb|EFF34318.1| beta-lactam-insensitive peptidoglycan transpeptidase [Enterococcus faecium E1162] Length = 466 Score = 43.7 bits (102), Expect = 0.067, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 Y+ V++ + ++GKV L + ++ G+ TP Sbjct: 341 EDTYIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTP 378 >gi|224370554|ref|YP_002604718.1| hypothetical protein HRM2_34790 [Desulfobacterium autotrophicum HRM2] gi|223693271|gb|ACN16554.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 328 Score = 43.3 bits (101), Expect = 0.068, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 R R + L PS+ + +D V+ Q L P G+V T +A+N Sbjct: 39 RARAALLAKL-PSERQTRTYDTTTFKLVRAIQEERQLRPDGVVGKQTADAVN 89 >gi|229105784|ref|ZP_04236413.1| Carboxyl-terminal protease [Bacillus cereus Rock3-28] gi|228677673|gb|EEL31921.1| Carboxyl-terminal protease [Bacillus cereus Rock3-28] Length = 494 Score = 43.3 bits (101), Expect = 0.069, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR------QLQVNL 180 T EA+ + +IR QLQ L Sbjct: 463 KTAEAIQTKIIEKIRSGENDLQLQAAL 489 >gi|229099607|ref|ZP_04230535.1| Carboxyl-terminal protease [Bacillus cereus Rock3-29] gi|229118673|ref|ZP_04248025.1| Carboxyl-terminal protease [Bacillus cereus Rock1-3] gi|228664865|gb|EEL20355.1| Carboxyl-terminal protease [Bacillus cereus Rock1-3] gi|228683903|gb|EEL37853.1| Carboxyl-terminal protease [Bacillus cereus Rock3-29] Length = 494 Score = 43.3 bits (101), Expect = 0.069, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR------QLQVNL 180 T EA+ + +IR QLQ L Sbjct: 463 KTAEAIQTKIIEKIRSGENDLQLQAAL 489 >gi|118590912|ref|ZP_01548312.1| negative regulator of AmpC, AmpD [Stappia aggregata IAM 12614] gi|118436434|gb|EAV43075.1| negative regulator of AmpC, AmpD [Stappia aggregata IAM 12614] Length = 254 Score = 43.3 bits (101), Expect = 0.069, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSS 160 + G+S V+ L+ L + G ++ FD V FQ G+ D S Sbjct: 181 MQEGDSGQPVEALQTMLALYGY---ELDITGTFDLKTRQVVAAFQRHFRPEKVDGVADQS 237 Query: 161 TLEAMN 166 T+E +N Sbjct: 238 TIETLN 243 >gi|320101740|ref|YP_004177331.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Isosphaera pallida ATCC 43644] gi|319749022|gb|ADV60782.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Isosphaera pallida ATCC 43644] Length = 702 Score = 43.3 bits (101), Expect = 0.070, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 24/166 (14%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 ++ P + + + DN R +++E ++A Sbjct: 261 AAGILYTPSGPIAVCVLTARNQDQRWTP--DNAAERFSAR-------LAREVYDHFQQA- 310 Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 D+ G PL G + V+RL+ L + P + F + AV Sbjct: 311 ---ADLKEAGR----DDSPLAFGATGPRVERLQRLLNRRLEPSPGLVVDGDFGPATQEAV 363 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMN-------VPVDLRIRQLQVNLM 181 FQ L +G+V A+ Q+N Sbjct: 364 IRFQKERHLGDNGVVTPEVWRALGELPPDPAGDPQAEADPAQLNAE 409 >gi|229161629|ref|ZP_04289609.1| Spore cortex-lytic enzyme [Bacillus cereus R309803] gi|228621874|gb|EEK78720.1| Spore cortex-lytic enzyme [Bacillus cereus R309803] Length = 259 Score = 43.3 bits (101), Expect = 0.070, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQQKFGLPVDGLAGTKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|147773502|emb|CAN66781.1| hypothetical protein VITISV_013507 [Vitis vinifera] Length = 373 Score = 43.3 bits (101), Expect = 0.070, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 105 GNSSVSVQRLRERLIISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 G+ + L++ G L P+ + FD+ E+AV ++Q + GL SG +DS T+ Sbjct: 53 GSQVSGMSELKKYFQRFGYLPVPNTNFTDVFDSRFETAVIMYQTKLGLPVSGKLDSKTIT 112 Query: 164 AMNVP 168 A+ P Sbjct: 113 AIVSP 117 >gi|254974151|ref|ZP_05270623.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile QCD-66c26] gi|255091552|ref|ZP_05321030.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile CIP 107932] gi|255313279|ref|ZP_05354862.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile QCD-76w55] gi|255515969|ref|ZP_05383645.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile QCD-97b34] gi|255649060|ref|ZP_05395962.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile QCD-37x79] gi|260682251|ref|YP_003213536.1| putative spore peptidoglycan hydrolase [Clostridium difficile CD196] gi|260685850|ref|YP_003216983.1| putative spore peptidoglycan hydrolase [Clostridium difficile R20291] gi|306519173|ref|ZP_07405520.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile QCD-32g58] gi|260208414|emb|CBA60957.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile CD196] gi|260211866|emb|CBE02295.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile R20291] Length = 423 Score = 43.3 bits (101), Expect = 0.070, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 3/87 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLD 152 P L +G+S V+ ++ +L + P+ + A E+AVK+FQ GL Sbjct: 334 SFPGTTLQVGSSGQYVRTIQNQLNAISNSYPAVPKVIEDGIYGADTENAVKIFQGIFGLP 393 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVN 179 SG+VD T ++ R +N Sbjct: 394 QSGVVDFKTWYEISRVYVATTRIASLN 420 >gi|291007888|ref|ZP_06565861.1| hypothetical protein SeryN2_25476 [Saccharopolyspora erythraea NRRL 2338] Length = 378 Score = 43.3 bits (101), Expect = 0.070, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 94 WPELPIRPLHLGN-SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 W L P+ G+ +V+ L+ L G P+ + +AV FQ +GL Sbjct: 309 WTALA--PVLSGDGQGDAVRALQTLLTSRGHYVPADA---HYAGRTATAVSDFQAANGLQ 363 Query: 153 PSGMVDSSTLEAM 165 P+G+ D + + Sbjct: 364 PTGVADHEVWKRL 376 >gi|134100266|ref|YP_001105927.1| hypothetical protein SACE_3731 [Saccharopolyspora erythraea NRRL 2338] gi|133912889|emb|CAM03002.1| hypothetical protein SACE_3731 [Saccharopolyspora erythraea NRRL 2338] Length = 368 Score = 43.3 bits (101), Expect = 0.070, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 94 WPELPIRPLHLGN-SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 W L P+ G+ +V+ L+ L G P+ + +AV FQ +GL Sbjct: 299 WTALA--PVLSGDGQGDAVRALQTLLTSRGHYVPADA---HYAGRTATAVSDFQAANGLQ 353 Query: 153 PSGMVDSSTLEAM 165 P+G+ D + + Sbjct: 354 PTGVADHEVWKRL 366 >gi|183179643|ref|ZP_02957854.1| vgrG protein [Vibrio cholerae MZO-3] gi|183013054|gb|EDT88354.1| vgrG protein [Vibrio cholerae MZO-3] Length = 1017 Score = 43.3 bits (101), Expect = 0.072, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 30/147 (20%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 I + L ++ S ++ ND + + SD+ S E ++ + Y+ Sbjct: 671 IDVASLPTMMPSSANNTANDEPVAEEKTPERILKSDLLKPSDELEKLAKRQASAYRQ--- 727 Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH- 149 GN S V+ L+E LI G G F ++A++ FQ + Sbjct: 728 --------------GNHSDEVKLLQEALIKLGFDLGKAGADGDFGGKTKTAIEQFQKSYQ 773 Query: 150 -----------GLDPSGMVDSSTLEAM 165 G G+V + TL A+ Sbjct: 774 PSHQTHPSYSIG-PVDGIVGNGTLLAL 799 >gi|39936601|ref|NP_948877.1| peptidoglycan binding domain-containing protein [Rhodopseudomonas palustris CGA009] gi|39650457|emb|CAE28980.1| Putative peptidoglycan binding domain 1:N-acetylmuramoyl-L-alanine amidase, family 2 [Rhodopseudomonas palustris CGA009] Length = 261 Score = 43.3 bits (101), Expect = 0.073, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 86 QDILSRG--GWPE----LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 + + + G W E +P L G V+ L++ L G P G ++D Sbjct: 160 RSLAASGVGLWVEPARIVPGPALKQGTEGDEVRLLQQALADYGYRVPVNG---SYDHATT 216 Query: 140 SAVKLFQMRHGL-DPSGMVDSSTLEAM-----NVPVDLRI 173 V FQ G+ D+STL + +PV+ R Sbjct: 217 DVVTAFQRHFRPEKVDGIADASTLATLHALLARLPVEARA 256 >gi|315604691|ref|ZP_07879754.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315313703|gb|EFU61757.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 353 Score = 43.3 bits (101), Expect = 0.074, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 5/79 (6%) Query: 100 RPLHLGNSS-VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R G S V++L L G + FD +A+K +Q GL G + Sbjct: 103 RDFSEGMSDGADVKQLETALSELGYF--QATPNEHFDWNTIAAIKRWQKALGLTQDGTLP 160 Query: 159 SSTLEAMNVPVDLRIRQLQ 177 T+ + P D+R+ L+ Sbjct: 161 LGTV--LFAPEDVRVGALK 177 >gi|108801144|ref|YP_641341.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Mycobacterium sp. MCS] gi|119870276|ref|YP_940228.1| peptidoglycan binding domain-containing protein [Mycobacterium sp. KMS] gi|126436973|ref|YP_001072664.1| peptidoglycan binding domain-containing protein [Mycobacterium sp. JLS] gi|108771563|gb|ABG10285.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Mycobacterium sp. MCS] gi|119696365|gb|ABL93438.1| Peptidoglycan-binding domain 1 protein [Mycobacterium sp. KMS] gi|126236773|gb|ABO00174.1| Peptidoglycan-binding domain 1 protein [Mycobacterium sp. JLS] Length = 232 Score = 43.3 bits (101), Expect = 0.074, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 103 HLGNSSVSVQRLRERL-IISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDS 159 +G + V + RL + + E+AV+ FQ R GL G+V Sbjct: 163 RIGFADAHVAEAQRRLKYAYRRYAGHLEIDGVYGPETEAAVREFQRRTPGLLADGIVGP 221 >gi|229175852|ref|ZP_04303350.1| Carboxyl-terminal protease [Bacillus cereus MM3] gi|228607585|gb|EEK64909.1| Carboxyl-terminal protease [Bacillus cereus MM3] Length = 494 Score = 43.3 bits (101), Expect = 0.075, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANKMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIR 477 >gi|120555335|ref|YP_959686.1| peptidoglycan binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120325184|gb|ABM19499.1| Peptidoglycan-binding domain 1 protein [Marinobacter aquaeolei VT8] Length = 136 Score = 43.3 bits (101), Expect = 0.075, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + L + V L+ L +G +S + D + + FQ +GL+ +G Sbjct: 17 TVALLGLAPVAQANEVVALKHALYGAGY--DITNVSPSMDDKTRAELTRFQKDNGLEATG 74 Query: 156 MVDSSTLEAM 165 +++ T A+ Sbjct: 75 ILNEETERAL 84 >gi|221195274|ref|ZP_03568330.1| cell wall hydrolase/autolysin [Atopobium rimae ATCC 49626] gi|221185177|gb|EEE17568.1| cell wall hydrolase/autolysin [Atopobium rimae ATCC 49626] Length = 309 Score = 43.3 bits (101), Expect = 0.075, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 20/108 (18%) Query: 76 AQTEKAIAFYQ--------DILSRGGWPELPIRPLHLGNS----------SVSVQRLRER 117 T KA+A ++ + + W L LG+ V++L+ER Sbjct: 39 PSTAKAVARFRLDHDLSLGEDVDTATWMLLVDESYQLGDRTLYLRLPNFHGNDVRQLQER 98 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L I G + + E+AVKLFQ G GM TL+A+ Sbjct: 99 LNILGF--SCGKPDGQYGVHTEAAVKLFQESVGELADGMAFQDTLDAI 144 Score = 42.9 bits (100), Expect = 0.097, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P+ G++ +V+ ++ERL+ +D S+ + AV F++ H L Sbjct: 3 PITPGSTGAAVEDIQERLVRLDYVIDDSEREKNTYGPSTAKAVARFRLDHDLS 55 >gi|262164753|ref|ZP_06032491.1| VgrG protein [Vibrio mimicus VM223] gi|262027133|gb|EEY45800.1| VgrG protein [Vibrio mimicus VM223] Length = 991 Score = 43.3 bits (101), Expect = 0.076, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 30/147 (20%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 I + L ++ S ++ ND + + SD+ S E ++ + Y+ Sbjct: 671 IDVASLPTMMPSSANNTANDEPVAEEKIPERILKSDLLKPSDELEKLAKRQASAYRQ--- 727 Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH- 149 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 728 --------------GNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQ 773 Query: 150 -----------GLDPSGMVDSSTLEAM 165 G G+V TL A+ Sbjct: 774 PSHQTHPSYSIG-AVDGIVGKGTLLAL 799 >gi|145593093|ref|YP_001157390.1| peptidoglycan binding domain-containing protein [Salinispora tropica CNB-440] gi|145302430|gb|ABP53012.1| Peptidoglycan-binding domain 1 protein [Salinispora tropica CNB-440] Length = 334 Score = 43.3 bits (101), Expect = 0.076, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 8/57 (14%) Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM--------NVPVDLRIRQ 175 F SAV +Q GL P G+V T + N LR+R+ Sbjct: 214 GATRDGVFGPKTRSAVIKYQRARGLTPDGIVGPKTWATLLGSLPSHPNGSRVLRLRR 270 Score = 39.8 bits (92), Expect = 0.94, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 18/105 (17%) Query: 76 AQTEKAIAFYQD--------ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISG-DLDP 126 +T A+ YQ I+ W L + L + V RLR + G D++ Sbjct: 223 PKTRSAVIKYQRARGLTPDGIVGPKTWATL-LGSLPSHPNGSRVLRLRRPTHMRGTDVEA 281 Query: 127 SK--------GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 + F S V+ +Q GL P G+V T Sbjct: 282 VQRFIGARCGAADGIFGTKTASGVRWYQRMRGLTPDGIVGPKTWA 326 >gi|229821443|ref|YP_002882969.1| hypothetical protein Bcav_2962 [Beutenbergia cavernae DSM 12333] gi|229567356|gb|ACQ81207.1| hypothetical protein Bcav_2962 [Beutenbergia cavernae DSM 12333] Length = 547 Score = 43.3 bits (101), Expect = 0.077, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 R L +G S V +L+ L+ G +DP S FD SAV R G Sbjct: 167 RSLRVGTSGPDVLQLKAALVALG-IDPGNADSDVFDGATASAVDALYARAGYP 218 >gi|229014342|ref|ZP_04171461.1| Carboxyl-terminal protease [Bacillus mycoides DSM 2048] gi|229063831|ref|ZP_04200135.1| Carboxyl-terminal protease [Bacillus cereus AH603] gi|229135987|ref|ZP_04264747.1| Carboxyl-terminal protease [Bacillus cereus BDRD-ST196] gi|229169888|ref|ZP_04297584.1| Carboxyl-terminal protease [Bacillus cereus AH621] gi|228613602|gb|EEK70731.1| Carboxyl-terminal protease [Bacillus cereus AH621] gi|228647445|gb|EEL03520.1| Carboxyl-terminal protease [Bacillus cereus BDRD-ST196] gi|228716468|gb|EEL68172.1| Carboxyl-terminal protease [Bacillus cereus AH603] gi|228746942|gb|EEL96826.1| Carboxyl-terminal protease [Bacillus mycoides DSM 2048] Length = 494 Score = 43.3 bits (101), Expect = 0.080, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR------QLQVNL 180 T EA+ + +IR QLQ L Sbjct: 463 KTAEAIQTKIIEKIRSGENDLQLQTAL 489 >gi|38638452|ref|NP_943827.1| gp49 [Mycobacterium phage PG1] gi|109391895|ref|YP_655145.1| gp49 [Mycobacterium phage Orion] gi|33334067|gb|AAQ12126.1| gp49 [Mycobacterium phage PG1] gi|88910437|gb|ABD58365.1| gp49 [Mycobacterium phage Orion] gi|282721531|gb|ADA83978.1| gp49 [Mycobacterium phage Scoot17C] Length = 429 Score = 43.3 bits (101), Expect = 0.080, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 104 LGNSSVSVQRLRERL-IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 N + V+R++ RL + F E AV+ FQ R L G+V +T Sbjct: 365 PRNDADRVRRVQRRLKAAYRSYAGHLEIDGDFGPLTELAVREFQRRSLLIADGIVGPNTA 424 Query: 163 EAM 165 A+ Sbjct: 425 AAL 427 >gi|163942867|ref|YP_001647751.1| carboxyl-terminal protease [Bacillus weihenstephanensis KBAB4] gi|163865064|gb|ABY46123.1| carboxyl-terminal protease [Bacillus weihenstephanensis KBAB4] Length = 478 Score = 43.3 bits (101), Expect = 0.080, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 389 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEATGQLDK 446 Query: 160 STLEAMNVPVDLRIR------QLQVNL 180 T EA+ + +IR QLQ L Sbjct: 447 KTAEAIQTKIIEKIRSGENDLQLQTAL 473 >gi|255927572|gb|ACU41194.1| gp48 [Mycobacterium phage Colbert] Length = 433 Score = 43.3 bits (101), Expect = 0.082, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 104 LGNSSVSVQRLRERL-IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 N + V+R++ RL + F E AV+ FQ R L G+V +T Sbjct: 369 PRNDADRVRRVQRRLKAAYRSYAGHLEIDGDFGPLTELAVREFQRRSLLIADGIVGPNTA 428 Query: 163 EAM 165 A+ Sbjct: 429 AAL 431 >gi|229173406|ref|ZP_04300950.1| Spore cortex-lytic enzyme [Bacillus cereus MM3] gi|228610100|gb|EEK67378.1| Spore cortex-lytic enzyme [Bacillus cereus MM3] Length = 259 Score = 43.3 bits (101), Expect = 0.082, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G S V L+ RL +G + F A++ FQ + GL G+ + T Sbjct: 38 IQRGASGEDVIELQSRLKYNGFYTG--KVDGVFGWGTYWALRNFQGKFGLPVDGLAGAKT 95 Query: 162 LEAM 165 + + Sbjct: 96 KQML 99 >gi|298527700|ref|ZP_07015104.1| Peptidoglycan-binding domain 1 protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511352|gb|EFI35254.1| Peptidoglycan-binding domain 1 protein [Desulfonatronospira thiodismutans ASO3-1] Length = 507 Score = 43.3 bits (101), Expect = 0.082, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 12/102 (11%) Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGD 123 S P KE Q+ K I ++ PE+ ++ + S +Q+++ERL G Sbjct: 412 FSAFPW--KEYTGQSPKWIVLWR--------PEVIVQEFYPDLRSQEIQKIQERLSDLGY 461 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + A+ FQ + L+ SG T+ + Sbjct: 462 Y--RNITDGYLGSATWHALMDFQAAYDLETSGTPTPETIFWL 501 >gi|37520189|ref|NP_923566.1| hypothetical protein gll0620 [Gloeobacter violaceus PCC 7421] gi|35211182|dbj|BAC88561.1| gll0620 [Gloeobacter violaceus PCC 7421] Length = 424 Score = 43.3 bits (101), Expect = 0.082, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 9/99 (9%) Query: 86 QDILSRGGWPELPIRPLHLGN---SSVSVQRLRERLIISGD-----LDPSKGLSVAFDAY 137 + ++ GW EL G + +V+ L+ +L+ G + F Sbjct: 21 RAERAQTGWDELRDAEETQGTFVRNREAVRSLQRQLVFLGYTTGAGPSSGATIDGRFGPG 80 Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 E AV FQ HGL G D T +++ V R QL Sbjct: 81 TERAVHTFQREHGLAV-GNFDRKTAQSLVQAVAERATQL 118 >gi|256395924|ref|YP_003117488.1| peptidoglycan-binding protein [Catenulispora acidiphila DSM 44928] gi|256362150|gb|ACU75647.1| Peptidoglycan-binding domain 1 protein [Catenulispora acidiphila DSM 44928] Length = 349 Score = 43.3 bits (101), Expect = 0.083, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 5/77 (6%) Query: 95 PELP--IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P++ L G++ +V L+ L G ++ +D AV Q + Sbjct: 270 PQISPSAGTLQAGDTGPNVSILQTLLDRLGT-PTWVPVTGVYDTRTTDAVAYVQNMLNIT 328 Query: 153 PS--GMVDSSTLEAMNV 167 G+ T A+N Sbjct: 329 ADPRGVCGPDTASAINT 345 >gi|93278555|pdb|1ZAT|A Chain A, Crystal Structure Of An Enterococcus Faecium Peptidoglycan Binding Protein At 2.4 A Resolution Length = 250 Score = 43.3 bits (101), Expect = 0.083, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 Y+ V++ + ++GKV L + ++ G+ TP Sbjct: 125 EDTYIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTP 162 >gi|251799692|ref|YP_003014423.1| carboxyl-terminal protease [Paenibacillus sp. JDR-2] gi|247547318|gb|ACT04337.1| carboxyl-terminal protease [Paenibacillus sp. JDR-2] Length = 486 Score = 43.3 bits (101), Expect = 0.084, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Query: 113 RLRE---RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++R L G ++ ++A E AVK FQ GL +G +D+ T ++ Sbjct: 406 QIRNAQVMLSGLGY--ATQREDGYYNASTEQAVKDFQNASGLPVTGEIDTKTAASL 459 >gi|27379486|ref|NP_771015.1| hypothetical protein blr4375 [Bradyrhizobium japonicum USDA 110] gi|27352638|dbj|BAC49640.1| blr4375 [Bradyrhizobium japonicum USDA 110] Length = 353 Score = 43.3 bits (101), Expect = 0.084, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 47/144 (32%), Gaps = 45/144 (31%) Query: 221 VGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKE 280 VG D+ +P ++ + NP L R +P Y + + + Sbjct: 244 VGSEDKPSPSGTLKVTEVSKNP---------------LYRYNPAY----HFKGVRSRK-- 282 Query: 281 VFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR-NNTYMHDTPEPILFNNVVRFE 339 F PG N + + I + H TP P + + + E Sbjct: 283 ----------------PFTIKPGPNNPVGTVWINLSAEGYGI--HGTPSP---DKISKAE 321 Query: 340 TSGCVRVRN--IIDLDVWLLKDTP 361 + GCVR+ N + + K TP Sbjct: 322 SHGCVRLTNWDAERVAGSVAKGTP 345 >gi|317489796|ref|ZP_07948295.1| spore cortex-lytic enzyme [Eggerthella sp. 1_3_56FAA] gi|325830265|ref|ZP_08163722.1| peptidoglycan binding domain protein [Eggerthella sp. HGA1] gi|316911142|gb|EFV32752.1| spore cortex-lytic enzyme [Eggerthella sp. 1_3_56FAA] gi|325487732|gb|EGC90170.1| peptidoglycan binding domain protein [Eggerthella sp. HGA1] Length = 301 Score = 43.3 bits (101), Expect = 0.085, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 12/82 (14%) Query: 94 WPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W L LG+ V L+ L G F A+ E A++ Sbjct: 66 WAALVDASFTLGDRTLYLRMPHFHGHDVLELQHALGALGF--ACGATDGIFGAFTELALR 123 Query: 144 LFQMRHGLDPSGMVDSSTLEAM 165 FQ+ GL G+ + T A+ Sbjct: 124 KFQLNLGLPSDGIAGAYTYAAI 145 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ +V+ +++RL+ G LDP+ + AF AV+ F GL + V A+ Sbjct: 11 DTGPAVEDVQQRLVTIGLLDPAD-VDGAFGDTTAEAVQAFCGGAGLPLTDEVTEKVWAAL 69 >gi|257790349|ref|YP_003180955.1| Peptidoglycan-binding domain 1 protein [Eggerthella lenta DSM 2243] gi|257474246|gb|ACV54566.1| Peptidoglycan-binding domain 1 protein [Eggerthella lenta DSM 2243] Length = 330 Score = 43.3 bits (101), Expect = 0.085, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 12/82 (14%) Query: 94 WPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W L LG+ V L+ L G F A+ E A++ Sbjct: 95 WAALVDASFTLGDRTLYLRMPHFHGHDVLELQHALGALGF--ACGATDGIFGAFTELALR 152 Query: 144 LFQMRHGLDPSGMVDSSTLEAM 165 FQ+ GL G+ + T A+ Sbjct: 153 KFQLNLGLPSDGIAGAYTYAAI 174 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ +V+ +++RL+ G LDP+ + AF AV+ F GL + V A+ Sbjct: 40 DTGPAVEDVQQRLVTIGLLDPAD-VDGAFGDTTAEAVQAFCGGAGLPLTDEVTEKVWAAL 98 >gi|258622292|ref|ZP_05717318.1| VgrG protein [Vibrio mimicus VM573] gi|258585616|gb|EEW10339.1| VgrG protein [Vibrio mimicus VM573] Length = 1025 Score = 43.3 bits (101), Expect = 0.085, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 13/79 (16%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH--------- 149 GN+S V+ L++ LI G G F ++A++ FQ + Sbjct: 722 ASAYRQGNNSEEVRLLQQALIKLGFDLGKAGADGDFAGKTKTAIEQFQKSYQPSHQTHPS 781 Query: 150 ---GLDPSGMVDSSTLEAM 165 G G+V TL A+ Sbjct: 782 YSIG-PVDGIVGKGTLLAL 799 >gi|238926502|ref|ZP_04658262.1| 3D domain protein [Selenomonas flueggei ATCC 43531] gi|238885696|gb|EEQ49334.1| 3D domain protein [Selenomonas flueggei ATCC 43531] Length = 269 Score = 43.3 bits (101), Expect = 0.085, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 13/126 (10%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G +V+ ++E LI SG L + A++ Q H L G+ +T Sbjct: 92 KEGMRGGAVRHVQELLIQSGYLAGAADGIAG--PLTREAIERCQADHQLVVDGICGEATY 149 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQ--KMGLRYVLVNIPAASLEAVENGKVGLRSTVI 220 ++ D L + R Q + G R V V+ A S A + G S Sbjct: 150 HVLSGGADYDPAALGIVDERA----PQVSRGGGRSVYVSATAYS--AYDPGN---SSRTA 200 Query: 221 VGRVDR 226 G + R Sbjct: 201 TGTLVR 206 >gi|261366638|ref|ZP_05979521.1| penicillin-resistant DD-carboxypeptidase [Subdoligranulum variabile DSM 15176] gi|282571457|gb|EFB76992.1| penicillin-resistant DD-carboxypeptidase [Subdoligranulum variabile DSM 15176] Length = 229 Score = 43.3 bits (101), Expect = 0.085, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 7/66 (10%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G+P + G+ + V L++ L G PS L F + ESA+K Q L Sbjct: 148 GYPTV-----RRGSRNTYVLILQDALNALGY--PSGSLDGVFGSATESALKAIQKDFSLT 200 Query: 153 PSGMVD 158 G+ Sbjct: 201 ADGVCG 206 >gi|158314338|ref|YP_001506846.1| peptidoglycan binding domain-containing protein [Frankia sp. EAN1pec] gi|158109743|gb|ABW11940.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EAN1pec] Length = 256 Score = 43.3 bits (101), Expect = 0.085, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 5/62 (8%) Query: 102 LHLGNSSVS--VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + LG V V +++RL G G F V FQ ++GL P G+V Sbjct: 192 MRLGVEGVRWDVALVQKRLADIGYPITVDG---RFGPQTNHMVVDFQKKNGLVPDGVVGP 248 Query: 160 ST 161 T Sbjct: 249 LT 250 >gi|206600340|ref|YP_002241360.1| gp50 [Mycobacterium phage Chah] gi|206287428|gb|ACI12770.1| gp50 [Mycobacterium phage Chah] gi|282721427|gb|ADA83875.1| gp49 [Mycobacterium phage Fang] Length = 438 Score = 43.3 bits (101), Expect = 0.087, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 104 LGNSSVSVQRLRERL-IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 N + V+R++ RL + F E AV+ FQ R L G+V +T Sbjct: 374 PRNDADRVRRVQRRLKAAYRSYAGHLEIDGDFGPLTELAVREFQRRSLLIADGIVGPNTA 433 Query: 163 EAM 165 A+ Sbjct: 434 AAL 436 >gi|153212843|ref|ZP_01948460.1| VgrG protein [Vibrio cholerae 1587] gi|124116221|gb|EAY35041.1| VgrG protein [Vibrio cholerae 1587] Length = 1039 Score = 43.3 bits (101), Expect = 0.087, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 30/147 (20%) Query: 31 IHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILS 90 I + L ++ S ++ ND + + SD+ S E ++ + Y+ Sbjct: 673 IDVASLPTMMPSSANNTANDEPVAEEKTPERILKSDLLKPSDELEKLAKRQASAYRQ--- 729 Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH- 149 GN S V+ L+E LI G G F ++A++ FQ + Sbjct: 730 --------------GNHSDEVKLLQEALIKLGFDLGKAGADGDFGGKTKTAIEQFQKSYQ 775 Query: 150 -----------GLDPSGMVDSSTLEAM 165 G G+V + TL A+ Sbjct: 776 PSHQTHPSYSIG-PVDGIVGNGTLLAL 801 >gi|77164193|ref|YP_342718.1| peptidoglycan binding domain-containing protein [Nitrosococcus oceani ATCC 19707] gi|76882507|gb|ABA57188.1| Peptidoglycan-binding domain 1 [Nitrosococcus oceani ATCC 19707] Length = 465 Score = 43.3 bits (101), Expect = 0.087, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +V ++ RL G + F SA++ FQ + + G+ S L +N Sbjct: 229 DATVLAIQRRLNELGY--NAGTPDGLFGNKTRSAIQAFQRDNAVATDGVASRSLLSQLNA 286 Query: 168 P 168 Sbjct: 287 S 287 >gi|255928510|gb|ACU42125.1| gp48 [Mycobacterium phage UncleHowie] Length = 438 Score = 43.3 bits (101), Expect = 0.088, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 104 LGNSSVSVQRLRERL-IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 N + V+R++ RL + F E AV+ FQ R L G+V +T Sbjct: 374 PRNDADRVRRVQRRLKAAYRSYAGHLEIDGDFGPLTELAVREFQRRSLLIADGIVGPNTA 433 Query: 163 EAM 165 A+ Sbjct: 434 AAL 436 >gi|164687688|ref|ZP_02211716.1| hypothetical protein CLOBAR_01330 [Clostridium bartlettii DSM 16795] gi|164603462|gb|EDQ96927.1| hypothetical protein CLOBAR_01330 [Clostridium bartlettii DSM 16795] Length = 424 Score = 43.3 bits (101), Expect = 0.088, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 101 PLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L +G+ V+ ++ +L IS P + AV+ FQ GL +G+V Sbjct: 340 TLEIGSEGTPVRTIQNQLNAISNSYPAIPKVAEDGIYGPSTAEAVRTFQKIFGLPQTGVV 399 Query: 158 DSSTLEAM 165 D T + Sbjct: 400 DFKTWYEI 407 >gi|149241998|pdb|2HKL|A Chain A, Crystal Structure Of Enterococcus Faecium L,D- Transpeptidase C442s Mutant gi|149241999|pdb|2HKL|B Chain B, Crystal Structure Of Enterococcus Faecium L,D- Transpeptidase C442s Mutant gi|149242000|pdb|2HKL|C Chain C, Crystal Structure Of Enterococcus Faecium L,D- Transpeptidase C442s Mutant Length = 250 Score = 42.9 bits (100), Expect = 0.088, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 19/38 (50%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 Y+ V++ + ++GKV L + ++ G+ TP Sbjct: 125 EDTYIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTP 162 >gi|114567247|ref|YP_754401.1| C-terminal processing peptidase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338182|gb|ABI69030.1| C-terminal processing peptidase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 497 Score = 42.9 bits (100), Expect = 0.089, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 13/94 (13%) Query: 92 GGWPELPIRPLH------LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 GW + PL L +SS+ V + L SG + D +A+K F Sbjct: 395 NGWEISNLMPLEKSGKPALNSSSLEVYNAEKILSASGY--ELDKPDMTLDIKTFNAIKKF 452 Query: 146 QMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 Q L PSG++D +T EA+N R RQ +N Sbjct: 453 QQEQRLYPSGILDFTTQEALN-----RKRQELIN 481 >gi|320107055|ref|YP_004182645.1| peptidoglycan-binding domain 1 protein [Terriglobus saanensis SP1PR4] gi|319925576|gb|ADV82651.1| Peptidoglycan-binding domain 1 protein [Terriglobus saanensis SP1PR4] Length = 262 Score = 42.9 bits (100), Expect = 0.090, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 9/76 (11%) Query: 97 LPIRPLHLGNSSV-SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR----HG- 150 P + G+++ +V +++RL+I G + + A AV+ FQ R +G Sbjct: 6 FPGTTIMAGSTNKEAVTAIQKRLVIVG--CGPVDVDGKYGAETAGAVEHFQARSVDSNGT 63 Query: 151 -LDPSGMVDSSTLEAM 165 L G V +T + Sbjct: 64 PLLIDGKVGPTTWAVL 79 >gi|257871347|ref|ZP_05651000.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus gallinarum EG2] gi|257805511|gb|EEV34333.1| ErfK/YbiS/YcfS/YnhG family protein [Enterococcus gallinarum EG2] Length = 465 Score = 42.9 bits (100), Expect = 0.090, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 19/39 (48%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 G Y+ V++ + ++G V L + +I G+ TP Sbjct: 344 FGNTYIEVDLKNQHMWYYKDGAVALETDIISGKPKSPTP 382 >gi|225016924|ref|ZP_03706116.1| hypothetical protein CLOSTMETH_00837 [Clostridium methylpentosum DSM 5476] gi|224950318|gb|EEG31527.1| hypothetical protein CLOSTMETH_00837 [Clostridium methylpentosum DSM 5476] Length = 146 Score = 42.9 bits (100), Expect = 0.090, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +G VQ+LR + I P + D + A+ FQ+ + L P G++D T Sbjct: 59 IGAEVRPVQQLRAVINIPDGQIPVRIQDRIVDQNRKDALTTFQLWYALVPDGVLDRETWN 118 Query: 164 AMNVPVD 170 +N P Sbjct: 119 KINEPPS 125 >gi|218133257|ref|ZP_03462061.1| hypothetical protein BACPEC_01122 [Bacteroides pectinophilus ATCC 43243] gi|217992130|gb|EEC58134.1| hypothetical protein BACPEC_01122 [Bacteroides pectinophilus ATCC 43243] Length = 417 Score = 42.9 bits (100), Expect = 0.090, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V++++E+L + G+ S + + AV+ FQ L + Sbjct: 333 PGSNLDIGSSGSKVRQIQEQLNLIGEFYSSIPVLIPDGIYGERTADAVRAFQKIFRLPQT 392 Query: 155 GMVDSSTLE 163 G+VD T Sbjct: 393 GIVDYPTWY 401 >gi|148242142|ref|YP_001227299.1| hypothetical protein SynRCC307_1043 [Synechococcus sp. RCC307] gi|147850452|emb|CAK27946.1| Conserved hypothetical protein [Synechococcus sp. RCC307] Length = 165 Score = 42.9 bits (100), Expect = 0.091, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 22/46 (47%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 L ++NG+ V VGR TP+ R++R+ +P W P Sbjct: 32 QLRVIQNGRQIASYPVAVGRATNPTPLGTHRVHRLEKDPIWSSPWR 77 >gi|114797087|ref|YP_759395.1| putative localization factor protein PodJ [Hyphomonas neptunium ATCC 15444] gi|114737261|gb|ABI75386.1| putative localization factor protein PodJ [Hyphomonas neptunium ATCC 15444] Length = 1238 Score = 42.9 bits (100), Expect = 0.092, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 VQ ++ L G L A +A++ +Q GL SG V ++ +N Sbjct: 1176 QVQAVQTALSRLGYLSGEADG--VLGAQTANAIRDYQRNEGLSVSGTVTPELIDRLNTGA 1233 Query: 170 DLR 172 R Sbjct: 1234 SNR 1236 >gi|253578488|ref|ZP_04855760.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850806|gb|EES78764.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 521 Score = 42.9 bits (100), Expect = 0.093, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 41/171 (23%), Gaps = 58/171 (33%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR---VDRQTPILHSRINRIMFNPYWV 245 +G Y+ V++ + +NG+ S ++ G DRQTP I Sbjct: 388 NDIGNTYIEVDLSEQHMYFYQNGEDIFESDIVSGDMRYSDRQTPAGIYTIYY-------- 439 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 ++ P L+ + + Q Sbjct: 440 --------------KKSPDVLRGK--------------------QLANGKYEYEQP---- 461 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILFN--NVVRFETSGCVRV--RNIIDL 352 HD F + + GC+ + +L Sbjct: 462 -----VTYWMPFNGGIGFHDANWQPYFGGDRFMEGGSHGCINMPPEKAAEL 507 >gi|114776543|ref|ZP_01451588.1| hypothetical protein SPV1_02447 [Mariprofundus ferrooxydans PV-1] gi|114553373|gb|EAU55771.1| hypothetical protein SPV1_02447 [Mariprofundus ferrooxydans PV-1] Length = 118 Score = 42.9 bits (100), Expect = 0.094, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L+E L G P + F + A+K Q +HGL PSG VD Sbjct: 1 MRGKRIALLQEILYRKGY--PMQDQKGVFGVHTRDAIKDIQKQHGLKPSGQVD 51 >gi|116621255|ref|YP_823411.1| ErfK/YbiS/YcfS/YnhG family protein [Candidatus Solibacter usitatus Ellin6076] gi|116224417|gb|ABJ83126.1| ErfK/YbiS/YcfS/YnhG family protein [Candidatus Solibacter usitatus Ellin6076] Length = 317 Score = 42.9 bits (100), Expect = 0.094, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 8/64 (12%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLL 357 PG N + I+ + Y +H TPEP + E+ GC+R+ N ++L + Sbjct: 254 PPGPNNPVGLVWIDLSKEH--YGIHGTPEPG---KIGHTESHGCIRLTNWDALELAAMVR 308 Query: 358 KDTP 361 TP Sbjct: 309 PGTP 312 Score = 37.5 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 2/71 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L G V R + L+ + + +F ++ AV FQ + SG VD+ Sbjct: 32 GDLAQGAKGAGVVR-AQILLARAHFSCGE-IDGSFGTNLQKAVMAFQNDRKIPASGTVDA 89 Query: 160 STLEAMNVPVD 170 +T A+N Sbjct: 90 ATWGALNSDAA 100 >gi|56478199|ref|YP_159788.1| putative peptidoglycan-binding protein [Aromatoleum aromaticum EbN1] gi|56314242|emb|CAI08887.1| putative peptidoglycan-binding protein [Aromatoleum aromaticum EbN1] Length = 401 Score = 42.9 bits (100), Expect = 0.094, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 34/114 (29%), Gaps = 22/114 (19%) Query: 69 IISKETIAQTEKAIAFYQDILSRG-----GWPELPIRPLHLGNSSVSVQRLRER-----L 118 + S AIA D L G WP + R+ R L Sbjct: 300 LYSYNAAESYALAIAHLSDRLRGGEPFRASWPT----------DDPGLSRVERREVQTLL 349 Query: 119 IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 G + A A +AV+ FQ GL+P G LE + R Sbjct: 350 SQLGY--DAGEADGALGARSRAAVQQFQRGQGLEPDGRAGRQVLELLRKAYAER 401 >gi|149179709|ref|ZP_01858214.1| hypothetical protein BSG1_01800 [Bacillus sp. SG-1] gi|148851901|gb|EDL66046.1| hypothetical protein BSG1_01800 [Bacillus sp. SG-1] Length = 490 Score = 42.9 bits (100), Expect = 0.095, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + L + S V+ E L G +D AV+ FQ GL+ +G + Sbjct: 398 PDKELKESDLSDQVKAAEEMLKAGGYNPGKADG--FYDEQTTEAVRAFQEEEGLEVTGNL 455 Query: 158 DSSTLEAM 165 +S ++ + Sbjct: 456 NSESILKL 463 >gi|255552736|ref|XP_002517411.1| Metalloendoproteinase 1 precursor, putative [Ricinus communis] gi|223543422|gb|EEF44953.1| Metalloendoproteinase 1 precursor, putative [Ricinus communis] Length = 311 Score = 42.9 bits (100), Expect = 0.096, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 H G++ + L++ L G L S FD +E A+K +Q + L+ +G +DS Sbjct: 48 HKGDNLKGIHDLKKYLENFGYLSYKNQSHSNDDDFDDLLEYALKTYQFNYHLNVTGFLDS 107 Query: 160 STLEAMNVP 168 T+ M +P Sbjct: 108 ETVTKMMMP 116 >gi|309776324|ref|ZP_07671312.1| N-acetylmuramoyl-L-alanine amidase [Erysipelotrichaceae bacterium 3_1_53] gi|308915920|gb|EFP61672.1| N-acetylmuramoyl-L-alanine amidase [Erysipelotrichaceae bacterium 3_1_53] Length = 226 Score = 42.9 bits (100), Expect = 0.098, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 7/80 (8%) Query: 83 AFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 Y G+P L G+ V V L++ L G ++ L F SA+ Sbjct: 135 KRYGTPACSAGFPV-----LRNGSRGVYVLILQDALNALGY--STRTLDGVFGNNTRSAL 187 Query: 143 KLFQMRHGLDPSGMVDSSTL 162 +Q +GL G+ T Sbjct: 188 VAYQRENGLSADGVAGCGTW 207 >gi|326942971|gb|AEA18867.1| carboxyl-terminal protease [Bacillus thuringiensis serovar chinensis CT-43] Length = 478 Score = 42.9 bits (100), Expect = 0.099, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 389 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEATGQLDK 446 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 447 KTAEAIQTKIIEKIR 461 >gi|330799115|ref|XP_003287593.1| hypothetical protein DICPUDRAFT_47448 [Dictyostelium purpureum] gi|325082379|gb|EGC35862.1| hypothetical protein DICPUDRAFT_47448 [Dictyostelium purpureum] Length = 772 Score = 42.9 bits (100), Expect = 0.099, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 5/70 (7%) Query: 99 IRPLHLG----NSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDP 153 + L G ++ +V L L G LD + + + E AVK FQ + L Sbjct: 318 VESLKEGLKGTSTGEAVSLLNYSLYSIGCLDEYNHSTREIYTSTTEYAVKKFQEENNLPS 377 Query: 154 SGMVDSSTLE 163 +G+ D +T+ Sbjct: 378 TGVADFNTIR 387 >gi|300856168|ref|YP_003781152.1| putative cell wall hydrolase [Clostridium ljungdahlii DSM 13528] gi|300436283|gb|ADK16050.1| putative cell wall hydrolase [Clostridium ljungdahlii DSM 13528] Length = 306 Score = 42.9 bits (100), Expect = 0.099, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE- 163 G+ S V ++++L G L + + +D AV Q G++ T Sbjct: 243 GHKSHVVLWIQQKLEQYGYLKKNSYTPMVYDEATFQAVTNLQKNWRKATDGILGPDTWSI 302 Query: 164 AMN 166 +N Sbjct: 303 FLN 305 >gi|228903654|ref|ZP_04067774.1| Carboxyl-terminal protease [Bacillus thuringiensis IBL 4222] gi|228911008|ref|ZP_04074816.1| Carboxyl-terminal protease [Bacillus thuringiensis IBL 200] gi|228848663|gb|EEM93509.1| Carboxyl-terminal protease [Bacillus thuringiensis IBL 200] gi|228855922|gb|EEN00462.1| Carboxyl-terminal protease [Bacillus thuringiensis IBL 4222] Length = 494 Score = 42.9 bits (100), Expect = 0.099, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIR 477 >gi|228961408|ref|ZP_04123022.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798293|gb|EEM45292.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar pakistani str. T13001] Length = 494 Score = 42.9 bits (100), Expect = 0.099, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIR 477 >gi|228942316|ref|ZP_04104855.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975245|ref|ZP_04135803.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981883|ref|ZP_04142178.1| Carboxyl-terminal protease [Bacillus thuringiensis Bt407] gi|228777995|gb|EEM26267.1| Carboxyl-terminal protease [Bacillus thuringiensis Bt407] gi|228784524|gb|EEM32545.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817360|gb|EEM63446.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 494 Score = 42.9 bits (100), Expect = 0.099, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIR 477 >gi|229032797|ref|ZP_04188754.1| Carboxyl-terminal protease [Bacillus cereus AH1271] gi|228728526|gb|EEL79545.1| Carboxyl-terminal protease [Bacillus cereus AH1271] Length = 494 Score = 42.9 bits (100), Expect = 0.099, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIR 477 >gi|229112588|ref|ZP_04242125.1| Carboxyl-terminal protease [Bacillus cereus Rock1-15] gi|229130426|ref|ZP_04259383.1| Carboxyl-terminal protease [Bacillus cereus BDRD-Cer4] gi|228653021|gb|EEL08902.1| Carboxyl-terminal protease [Bacillus cereus BDRD-Cer4] gi|228670968|gb|EEL26275.1| Carboxyl-terminal protease [Bacillus cereus Rock1-15] Length = 494 Score = 42.9 bits (100), Expect = 0.099, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIR 477 >gi|229164119|ref|ZP_04292055.1| Carboxyl-terminal protease [Bacillus cereus R309803] gi|228619355|gb|EEK76245.1| Carboxyl-terminal protease [Bacillus cereus R309803] Length = 494 Score = 42.9 bits (100), Expect = 0.099, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIR 477 >gi|228923905|ref|ZP_04087182.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228955418|ref|ZP_04117423.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229050841|ref|ZP_04194393.1| Carboxyl-terminal protease [Bacillus cereus AH676] gi|229072627|ref|ZP_04205829.1| Carboxyl-terminal protease [Bacillus cereus F65185] gi|229082386|ref|ZP_04214849.1| Carboxyl-terminal protease [Bacillus cereus Rock4-2] gi|229147705|ref|ZP_04276048.1| Carboxyl-terminal protease [Bacillus cereus BDRD-ST24] gi|229153335|ref|ZP_04281513.1| Carboxyl-terminal protease [Bacillus cereus m1550] gi|229181435|ref|ZP_04308763.1| Carboxyl-terminal protease [Bacillus cereus 172560W] gi|228602010|gb|EEK59503.1| Carboxyl-terminal protease [Bacillus cereus 172560W] gi|228629939|gb|EEK86590.1| Carboxyl-terminal protease [Bacillus cereus m1550] gi|228635718|gb|EEK92205.1| Carboxyl-terminal protease [Bacillus cereus BDRD-ST24] gi|228700818|gb|EEL53341.1| Carboxyl-terminal protease [Bacillus cereus Rock4-2] gi|228710603|gb|EEL62576.1| Carboxyl-terminal protease [Bacillus cereus F65185] gi|228722497|gb|EEL73890.1| Carboxyl-terminal protease [Bacillus cereus AH676] gi|228804210|gb|EEM50824.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228835704|gb|EEM81068.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 494 Score = 42.9 bits (100), Expect = 0.099, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIR 477 >gi|229193421|ref|ZP_04320369.1| Carboxyl-terminal protease [Bacillus cereus ATCC 10876] gi|228590076|gb|EEK47947.1| Carboxyl-terminal protease [Bacillus cereus ATCC 10876] Length = 494 Score = 42.9 bits (100), Expect = 0.099, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIR 477 >gi|218900302|ref|YP_002448713.1| carboxyl-terminal protease [Bacillus cereus G9842] gi|218545542|gb|ACK97936.1| carboxyl-terminal protease [Bacillus cereus G9842] Length = 478 Score = 42.9 bits (100), Expect = 0.099, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 389 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEATGQLDK 446 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 447 KTAEAIQTKIIEKIR 461 >gi|206970036|ref|ZP_03230989.1| carboxyl-terminal protease [Bacillus cereus AH1134] gi|218233322|ref|YP_002369956.1| carboxyl-terminal protease [Bacillus cereus B4264] gi|296505596|ref|YP_003667296.1| carboxyl-terminal protease [Bacillus thuringiensis BMB171] gi|206734613|gb|EDZ51782.1| carboxyl-terminal protease [Bacillus cereus AH1134] gi|218161279|gb|ACK61271.1| carboxyl-terminal protease [Bacillus cereus B4264] gi|296326648|gb|ADH09576.1| carboxyl-terminal protease [Bacillus thuringiensis BMB171] Length = 478 Score = 42.9 bits (100), Expect = 0.099, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 389 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEATGQLDK 446 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 447 KTAEAIQTKIIEKIR 461 >gi|30023217|ref|NP_834848.1| carboxyl-terminal protease [Bacillus cereus ATCC 14579] gi|29898777|gb|AAP12049.1| Tail-specific protease [Bacillus cereus ATCC 14579] Length = 478 Score = 42.9 bits (100), Expect = 0.099, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 389 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEATGQLDK 446 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 447 KTAEAIQTKIIEKIR 461 >gi|75759022|ref|ZP_00739130.1| Tail-specific protease [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493488|gb|EAO56596.1| Tail-specific protease [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 127 Score = 42.9 bits (100), Expect = 0.099, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 38 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEATGQLDK 95 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 96 KTAEAIQTKIIEKIR 110 >gi|47564877|ref|ZP_00235921.1| putative peptidoglycan binding domain protein [Bacillus cereus G9241] gi|47558250|gb|EAL16574.1| putative peptidoglycan binding domain protein [Bacillus cereus G9241] Length = 741 Score = 42.9 bits (100), Expect = 0.099, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+S V + L +G S S ++ VESAVK FQ L G+ + ST Sbjct: 221 LKVGSSGRFVTLFQYALYFNG--HDSGSFSTTYNTNVESAVKKFQGFTLLPQDGVANKST 278 Query: 162 -LEAM 165 L A+ Sbjct: 279 WLSAL 283 >gi|269127230|ref|YP_003300600.1| ErfK/YbiS/YcfS/YnhG family protein [Thermomonospora curvata DSM 43183] gi|268312188|gb|ACY98562.1| ErfK/YbiS/YcfS/YnhG family protein [Thermomonospora curvata DSM 43183] Length = 243 Score = 42.9 bits (100), Expect = 0.10, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 15/122 (12%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V+ L+ RL G + + + AV FQ + + S V A Sbjct: 58 GARGEHVKALQRRLKELGYAPG--PIDGRYGNLTQMAVWAFQKVNRIKVSDTVGERMWAA 115 Query: 165 MNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV 224 + P R + ++ V V++ L + G+ L S + G Sbjct: 116 LENPKAPRP-------------VSKRREPERVDVDLRRQYLVVYKAGRPVLISHISSGSG 162 Query: 225 DR 226 + Sbjct: 163 EH 164 >gi|255928268|gb|ACU41885.1| gp48 [Mycobacterium phage Puhltonio] Length = 438 Score = 42.9 bits (100), Expect = 0.10, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 104 LGNSSVSVQRLRERL-IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 N + V+R++ RL + F E AV+ FQ R L G+V +T Sbjct: 374 PRNDADRVRRVQRRLKAAYRSYAGHLEIDGDFGPLTELAVREFQRRSLLIADGIVGPNTA 433 Query: 163 EAM 165 A+ Sbjct: 434 AAL 436 >gi|161507774|ref|YP_001577738.1| hypothetical protein lhv_1466 [Lactobacillus helveticus DPC 4571] gi|160348763|gb|ABX27437.1| hypothetical protein lhv_1466 [Lactobacillus helveticus DPC 4571] Length = 265 Score = 42.9 bits (100), Expect = 0.10, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 19/40 (47%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 ++ +AVK FQ RHGL +G V+ T + M Sbjct: 79 NYYNQATYNAVKNFQRRHGLKATGNVNLKTWQKMGFSKKS 118 >gi|149640756|ref|XP_001508107.1| PREDICTED: similar to membrane-type matrix metalloproteinase 2 [Ornithorhynchus anatinus] Length = 920 Score = 42.9 bits (100), Expect = 0.10, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 15/125 (12%) Query: 95 PELPIRPLHLGNSSVSVQRLRER--------LIISGDLD-PSKGLSVAFDAY-VESAVKL 144 P P R S+ +V +R L + G L PS+ +S A + SA+ Sbjct: 399 PVGPSRSQSPRASTPTVLATSKRPDTPELSWLRLYGYLPQPSRQMSTMRSAQILASAISE 458 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVP----VDLRIRQLQVNLMRIKK-LLEQKMGLRYVLVN 199 Q +G+ +G++D T + M P D +++ N+ R + L +K R + + Sbjct: 459 MQRFYGITVTGVLDEETKDWMKRPRCGVPDQFGVRVKANMRRKRYALTGRKWNHRQLTFS 518 Query: 200 IPAAS 204 I + Sbjct: 519 IQNYT 523 >gi|268610247|ref|ZP_06143974.1| hypothetical protein RflaF_12199 [Ruminococcus flavefaciens FD-1] Length = 367 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL G+ V L+E L + + F A E AV FQ +HGL +G D+ Sbjct: 46 PLARGSKGEDVCWLQESLNQA--CGADLVVDDTFGAKTEEAVLNFQKQHGLPETGQADTH 103 Query: 161 TLEAM 165 T+E + Sbjct: 104 TIETL 108 >gi|238917193|ref|YP_002930710.1| hypothetical protein EUBELI_01266 [Eubacterium eligens ATCC 27750] gi|238872553|gb|ACR72263.1| Hypothetical protein EUBELI_01266 [Eubacterium eligens ATCC 27750] Length = 419 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V++L+E+L + G+ P + +AVK FQ L S Sbjct: 336 PGTNLDIGSSGQKVRQLQEQLNLIGEYYNSIPVLSTDGIYGEQTAAAVKEFQRIFNLPQS 395 Query: 155 GMVDSSTL 162 G+ D T Sbjct: 396 GITDFPTW 403 >gi|316933177|ref|YP_004108159.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rhodopseudomonas palustris DX-1] gi|315600891|gb|ADU43426.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rhodopseudomonas palustris DX-1] Length = 288 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 15/100 (15%) Query: 86 QDILSRG--GWPE----LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 + + + G W E +P L G V+ +++ L G P +S ++D Sbjct: 187 RSLAASGVGLWVEPARIVPGPALKQGTEGEEVRLMQQALADYGYRVP---VSGSYDHATA 243 Query: 140 SAVKLFQMRHGL-DPSGMVDSSTLEAM-----NVPVDLRI 173 V FQ G+ D+STL + +PV+ R Sbjct: 244 DVVTAFQRHFRPEKVDGIADASTLATLHALLARLPVEARA 283 >gi|256004227|ref|ZP_05429210.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum DSM 2360] gi|255991817|gb|EEU01916.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum DSM 2360] gi|316939606|gb|ADU73640.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum DSM 1313] Length = 289 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 20/55 (36%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++V+I A +L +G++ V G+ TP I NP Sbjct: 176 PVAPSSVRIIVSIAAKTLSLYRDGRLVKSYPVATGKPTTPTPRGTFTIINKQVNP 230 >gi|226952587|ref|ZP_03823051.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter sp. ATCC 27244] gi|294649883|ref|ZP_06727283.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] gi|226836667|gb|EEH69050.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter sp. ATCC 27244] gi|292824257|gb|EFF83060.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC 19194] Length = 412 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 87/248 (35%), Gaps = 54/248 (21%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 A+ FQ +GL P+G + T +A+ V + ++ + E + Y + Sbjct: 164 KAIASFQQMNGLTPTGQLTKETWDAL-VAKQTKPAYVEYTI------TEADLKGPYAE-S 215 Query: 200 IP-AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWV---IPRSIIQKDM 255 IP +L+A G R T ++G + R R NP + I+ ++ Sbjct: 216 IPTDYALQAKMKGLYYTRVTEMLGEKFH----MDERFLR-QLNPRANFNKVGEKIVVANV 270 Query: 256 MALLRQDPQYLKDN----NIHMIDEKGKEV--FVEEV--------------------DWN 289 L +D + + +++ + + + + F + W Sbjct: 271 RNDLPEDIHLIVAHKGAKQLYLFNSRNQMIASFPATIGSTSTPSPTGTYKVTGVAKNPWY 330 Query: 290 SPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSG 342 S P NF PG + + I S+ + +H TP P + + + G Sbjct: 331 SYSPSNFVQGKNLKPLSLPPGPNGPVGNIWIGL-SKKSFGIHGTPNPSMISKNA---SHG 386 Query: 343 CVRVRNII 350 C+R+ N Sbjct: 387 CIRLTNWD 394 >gi|297545248|ref|YP_003677550.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843023|gb|ADH61539.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 420 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 R L+ G V+ L+ L +G + + F + V FQ L P G Sbjct: 36 TFGSRLLYSGTYGTDVKELQAMLNKAGF--DTGTVDGIFGKMTLNGVLDFQRSKNLVPDG 93 Query: 156 MVDSSTLEAM 165 +V T + Sbjct: 94 IVGPKTYAVL 103 >gi|226530405|ref|NP_001147545.1| peptidoglycan binding domain containing protein [Zea mays] gi|195612094|gb|ACG27877.1| peptidoglycan binding domain containing protein [Zea mays] Length = 342 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G V+ ++E L G + + +F + E AVK +Q G +G++ Sbjct: 137 RTLRTGAEGEDVRAMQEALQKLGFYSGEEDMEYSSFSSGTERAVKTWQATVGASENGVMT 196 Query: 159 SSTLEAM 165 S LE + Sbjct: 197 SELLEWL 203 >gi|229514626|ref|ZP_04404087.1| VgrG protein [Vibrio cholerae TMA 21] gi|229348606|gb|EEO13564.1| VgrG protein [Vibrio cholerae TMA 21] Length = 1025 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 13/79 (16%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH--------- 149 GN S V+ L+E LI G G F + ++A++ FQ + Sbjct: 722 ASAYRQGNHSDEVKLLQEALIKLGFDLGKAGADGDFGSKTKTAIEQFQKSYQPSHQTHPS 781 Query: 150 ---GLDPSGMVDSSTLEAM 165 G G+V TL A+ Sbjct: 782 YSIG-AVDGIVGKGTLLAL 799 >gi|281419482|ref|ZP_06250496.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum JW20] gi|281406888|gb|EFB37152.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum JW20] Length = 289 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 20/55 (36%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++V+I A +L +G++ V G+ TP I NP Sbjct: 176 PVAPSSVRIIVSIAAKTLSLYRDGRLVKSYPVATGKPTTPTPRGTFTIINKQVNP 230 >gi|301056644|ref|YP_003794855.1| carboxyl-terminal protease [Bacillus anthracis CI] gi|300378813|gb|ADK07717.1| carboxyl-terminal protease [Bacillus cereus biovar anthracis str. CI] Length = 478 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 389 KTLSYNANDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANKMEATGQLDK 446 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 447 KTAEAIQTKIIEKIR 461 >gi|254724391|ref|ZP_05186175.1| carboxyl-terminal protease [Bacillus anthracis str. A1055] Length = 465 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 376 KTLSYNANDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANKMEATGQLDK 433 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 434 KTAEAIQTKIIEKIR 448 >gi|228936468|ref|ZP_04099266.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823300|gb|EEM69134.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 494 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNANDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANKMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIR 477 >gi|228948900|ref|ZP_04111173.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810656|gb|EEM57004.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 494 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNANDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANKMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIR 477 >gi|229158746|ref|ZP_04286804.1| Carboxyl-terminal protease [Bacillus cereus ATCC 4342] gi|228624730|gb|EEK81499.1| Carboxyl-terminal protease [Bacillus cereus ATCC 4342] Length = 494 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNANDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANKMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIR 477 >gi|229187391|ref|ZP_04314534.1| Carboxyl-terminal protease [Bacillus cereus BGSC 6E1] gi|228596095|gb|EEK53772.1| Carboxyl-terminal protease [Bacillus cereus BGSC 6E1] Length = 494 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNANDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANKMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIR 477 >gi|229141909|ref|ZP_04270435.1| Carboxyl-terminal protease [Bacillus cereus BDRD-ST26] gi|229199298|ref|ZP_04325965.1| Carboxyl-terminal protease [Bacillus cereus m1293] gi|228584158|gb|EEK42309.1| Carboxyl-terminal protease [Bacillus cereus m1293] gi|228641524|gb|EEK97829.1| Carboxyl-terminal protease [Bacillus cereus BDRD-ST26] Length = 494 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNANDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANKMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIR 477 >gi|222098636|ref|YP_002532694.1| carboxyl-terminal protease [Bacillus cereus Q1] gi|221242695|gb|ACM15405.1| carboxyl-terminal protease [Bacillus cereus Q1] Length = 469 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 380 KTLSYNANDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANKMEATGQLDK 437 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 438 KTAEAIQTKIIEKIR 452 >gi|206976835|ref|ZP_03237738.1| carboxyl- protease [Bacillus cereus H3081.97] gi|217962662|ref|YP_002341236.1| carboxyl-terminal protease [Bacillus cereus AH187] gi|206744970|gb|EDZ56374.1| carboxyl- protease [Bacillus cereus H3081.97] gi|217066361|gb|ACJ80611.1| carboxyl-terminal protease [Bacillus cereus AH187] gi|324329123|gb|ADY24383.1| carboxyl-terminal protease [Bacillus thuringiensis serovar finitimus YBT-020] Length = 478 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 389 KTLSYNANDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANKMEATGQLDK 446 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 447 KTAEAIQTKIIEKIR 461 >gi|147768133|emb|CAN60606.1| hypothetical protein VITISV_020065 [Vitis vinifera] Length = 260 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G+ +Q++++ L G + + S F+ +ES++K FQ + L+ +G +D+ Sbjct: 52 KKGDKREGIQKVKQYLQRYGYISSTHYSQMGSDDFNDALESSLKAFQTFYHLNSTGTLDA 111 Query: 160 STLEAMNVP 168 +T M+ P Sbjct: 112 ATATLMSRP 120 >gi|118480221|ref|YP_897372.1| carboxyl-terminal protease [Bacillus thuringiensis str. Al Hakam] gi|118419446|gb|ABK87865.1| carboxyl-terminal protease [Bacillus thuringiensis str. Al Hakam] Length = 495 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 406 KTLSYNANDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANKMEATGQLDK 463 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 464 KTAEAIQTKIIEKIR 478 >gi|49188018|ref|YP_031271.1| carboxyl-terminal protease [Bacillus anthracis str. Sterne] gi|49480386|ref|YP_039171.1| carboxyl-terminal protease [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165869894|ref|ZP_02214551.1| carboxyl-terminal protease [Bacillus anthracis str. A0488] gi|167635276|ref|ZP_02393591.1| carboxyl-terminal protease [Bacillus anthracis str. A0442] gi|167640531|ref|ZP_02398794.1| carboxyl-terminal protease [Bacillus anthracis str. A0193] gi|170687936|ref|ZP_02879149.1| carboxyl-terminal protease [Bacillus anthracis str. A0465] gi|170707750|ref|ZP_02898201.1| carboxyl-terminal protease [Bacillus anthracis str. A0389] gi|177653015|ref|ZP_02935342.1| carboxyl-terminal protease [Bacillus anthracis str. A0174] gi|190567669|ref|ZP_03020581.1| carboxyl-terminal protease [Bacillus anthracis Tsiankovskii-I] gi|196032931|ref|ZP_03100344.1| carboxyl-terminal protease [Bacillus cereus W] gi|196039446|ref|ZP_03106751.1| carboxyl-terminal protease [Bacillus cereus NVH0597-99] gi|196045752|ref|ZP_03112982.1| carboxyl-terminal protease [Bacillus cereus 03BB108] gi|218906357|ref|YP_002454191.1| carboxyl-terminal protease [Bacillus cereus AH820] gi|225867145|ref|YP_002752523.1| carboxyl-terminal protease [Bacillus cereus 03BB102] gi|227817942|ref|YP_002817951.1| carboxyl-terminal protease [Bacillus anthracis str. CDC 684] gi|229602027|ref|YP_002869401.1| carboxyl-terminal protease [Bacillus anthracis str. A0248] gi|254686392|ref|ZP_05150251.1| carboxyl-terminal protease [Bacillus anthracis str. CNEVA-9066] gi|254735597|ref|ZP_05193304.1| carboxyl-terminal protease [Bacillus anthracis str. Western North America USA6153] gi|254744315|ref|ZP_05201995.1| carboxyl-terminal protease [Bacillus anthracis str. Kruger B] gi|254755613|ref|ZP_05207646.1| carboxyl-terminal protease [Bacillus anthracis str. Vollum] gi|254757068|ref|ZP_05209096.1| carboxyl-terminal protease [Bacillus anthracis str. Australia 94] gi|49181945|gb|AAT57321.1| carboxyl-terminal protease [Bacillus anthracis str. Sterne] gi|49331942|gb|AAT62588.1| carboxyl-terminal protease [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164714217|gb|EDR19737.1| carboxyl-terminal protease [Bacillus anthracis str. A0488] gi|167511574|gb|EDR86957.1| carboxyl-terminal protease [Bacillus anthracis str. A0193] gi|167529319|gb|EDR92071.1| carboxyl-terminal protease [Bacillus anthracis str. A0442] gi|170127307|gb|EDS96183.1| carboxyl-terminal protease [Bacillus anthracis str. A0389] gi|170668045|gb|EDT18795.1| carboxyl-terminal protease [Bacillus anthracis str. A0465] gi|172081790|gb|EDT66860.1| carboxyl-terminal protease [Bacillus anthracis str. A0174] gi|190561085|gb|EDV15058.1| carboxyl-terminal protease [Bacillus anthracis Tsiankovskii-I] gi|195994360|gb|EDX58315.1| carboxyl-terminal protease [Bacillus cereus W] gi|196023583|gb|EDX62260.1| carboxyl-terminal protease [Bacillus cereus 03BB108] gi|196029606|gb|EDX68208.1| carboxyl-terminal protease [Bacillus cereus NVH0597-99] gi|218535514|gb|ACK87912.1| carboxyl-terminal protease [Bacillus cereus AH820] gi|225788534|gb|ACO28751.1| carboxyl-terminal protease [Bacillus cereus 03BB102] gi|227003396|gb|ACP13139.1| carboxyl-terminal protease [Bacillus anthracis str. CDC 684] gi|229266435|gb|ACQ48072.1| carboxyl-terminal protease [Bacillus anthracis str. A0248] Length = 478 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 389 KTLSYNANDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANKMEATGQLDK 446 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 447 KTAEAIQTKIIEKIR 461 >gi|52140383|ref|YP_086447.1| carboxyl-terminal protease [Bacillus cereus E33L] gi|51973852|gb|AAU15402.1| carboxyl-terminal protease [Bacillus cereus E33L] Length = 469 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 380 KTLSYNANDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANKMEATGQLDK 437 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 438 KTAEAIQTKIIEKIR 452 >gi|42784334|ref|NP_981581.1| carboxyl-terminal protease [Bacillus cereus ATCC 10987] gi|42740265|gb|AAS44189.1| carboxyl-terminal protease [Bacillus cereus ATCC 10987] Length = 469 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 380 KTLSYNANDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANKMEATGQLDK 437 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 438 KTAEAIQTKIIEKIR 452 >gi|30265208|ref|NP_847585.1| carboxyl-terminal protease [Bacillus anthracis str. Ames] gi|47530727|ref|YP_022076.1| carboxyl-terminal protease [Bacillus anthracis str. 'Ames Ancestor'] gi|30259885|gb|AAP29071.1| carboxyl-terminal protease [Bacillus anthracis str. Ames] gi|47505875|gb|AAT34551.1| carboxyl-terminal protease [Bacillus anthracis str. 'Ames Ancestor'] Length = 469 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 380 KTLSYNANDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANKMEATGQLDK 437 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 438 KTAEAIQTKIIEKIR 452 >gi|65317154|ref|ZP_00390113.1| COG0793: Periplasmic protease [Bacillus anthracis str. A2012] gi|228917786|ref|ZP_04081326.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930182|ref|ZP_04093191.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229094276|ref|ZP_04225352.1| Carboxyl-terminal protease [Bacillus cereus Rock3-42] gi|229124688|ref|ZP_04253869.1| Carboxyl-terminal protease [Bacillus cereus 95/8201] gi|228658783|gb|EEL14442.1| Carboxyl-terminal protease [Bacillus cereus 95/8201] gi|228689129|gb|EEL42952.1| Carboxyl-terminal protease [Bacillus cereus Rock3-42] gi|228829467|gb|EEM75095.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841891|gb|EEM86998.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 494 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNANDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANKMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIR 477 >gi|39933165|ref|NP_945441.1| peptidoglycan-binding domain 1 [Rhodopseudomonas palustris CGA009] gi|39652790|emb|CAE25529.1| unknown protein [Rhodopseudomonas palustris CGA009] Length = 447 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + L G+ Q ++ L +GD + V+ + +A+K FQ G P+G++ Sbjct: 42 TAKTLAQGDR----QAIQSDLAWTGDYNGLINGEVS--DRMIAAIKQFQTNQGHKPTGVL 95 Query: 158 DSSTLEAM 165 + + Sbjct: 96 NPQERGQL 103 >gi|331090845|ref|ZP_08339691.1| hypothetical protein HMPREF9477_00334 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399704|gb|EGG79366.1| hypothetical protein HMPREF9477_00334 [Lachnospiraceae bacterium 2_1_46FAA] Length = 540 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 49/179 (27%), Gaps = 57/179 (31%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWVI 246 G Y V++ + +NGK+ + S ++ G+ TP + Sbjct: 408 NDFGNTYAEVDLTTQHMWFFQNGKLMMESPIVTGKPSTGHATPQGTYTVTY-------TQ 460 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 ++++ ++ GK + VD+ P F Sbjct: 461 KGAVLRGKILP-------------------NGKREYETPVDFWMPFNGGIGF-------- 493 Query: 307 AMASTKIEFYSRNNTYMHDTPEPILF--NNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 HD F N + + GCV + L +L TP Sbjct: 494 -----------------HDATWQSSFGGNRYLTHGSHGCVNMPYDKAQQLFGYLKAGTP 535 >gi|314936435|ref|ZP_07843782.1| carboxyl- protease [Staphylococcus hominis subsp. hominis C80] gi|313655054|gb|EFS18799.1| carboxyl- protease [Staphylococcus hominis subsp. hominis C80] Length = 489 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + +G+++ +V+ ++ L G + + S FD + + +KLFQ + L +G D+ Sbjct: 403 KTYSVGDNNKNVKSIKIGLDALGYYNGDE--SNQFDNQLANTIKLFQSNNQLSETGKFDT 460 Query: 160 ST 161 T Sbjct: 461 KT 462 >gi|228476033|ref|ZP_04060741.1| carboxy- processing proteinase [Staphylococcus hominis SK119] gi|228269856|gb|EEK11336.1| carboxy- processing proteinase [Staphylococcus hominis SK119] Length = 489 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + +G+++ +V+ ++ L G + + S FD + + +KLFQ + L +G D+ Sbjct: 403 KTYSVGDNNKNVKSIKIGLDALGYYNGDE--SNQFDNQLANTIKLFQSNNQLSETGKFDT 460 Query: 160 ST 161 T Sbjct: 461 KT 462 >gi|119511704|ref|ZP_01630808.1| ErfK/YbiS/YcfS/YnhG-like protein [Nodularia spumigena CCY9414] gi|119463613|gb|EAW44546.1| ErfK/YbiS/YcfS/YnhG-like protein [Nodularia spumigena CCY9414] Length = 237 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 45/155 (29%), Gaps = 52/155 (33%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 V+VN+ + G+V + +G+ +TP RI P W P + Sbjct: 113 VVVNLSDRRTYVYKGGEVIASYPIAIGKEGWETPTGSFRITDKQKYPIWQHPIT------ 166 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 +VF G + + I F Sbjct: 167 -----------------------GKVFPS------------------GADSPLGERWIGF 185 Query: 316 --YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 RN H TP+ L + GC+R+RN Sbjct: 186 WSDGRNEIGFHGTPDTHLLGA---AISHGCLRMRN 217 >gi|125975485|ref|YP_001039395.1| ErfK/YbiS/YcfS/YnhG [Clostridium thermocellum ATCC 27405] gi|125715710|gb|ABN54202.1| ErfK/YbiS/YcfS/YnhG [Clostridium thermocellum ATCC 27405] Length = 289 Score = 42.9 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 20/55 (36%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++V+I A +L +G++ V G+ TP I NP Sbjct: 176 PVAPSSVRIIVSIAAKTLSLYRDGRLVKSYPVATGKPTTPTPRGTFTIINKQVNP 230 >gi|329890128|ref|ZP_08268471.1| putative peptidoglycan binding domain protein [Brevundimonas diminuta ATCC 11568] gi|328845429|gb|EGF94993.1| putative peptidoglycan binding domain protein [Brevundimonas diminuta ATCC 11568] Length = 346 Score = 42.5 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 58/189 (30%), Gaps = 59/189 (31%) Query: 195 YVLVNIPAASLEAVEN-GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 +++V+ S+ + K+ +G R P ++ + P Sbjct: 215 HIVVDKAERSVRVYDAADKLLAFYPATIGSSARPAP--SGELSVVGVAPE---------- 262 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 P Y D + D ++V V PG N + S I Sbjct: 263 ---------PNYTYDPDRVSYDRGDRKVIV-----------------PPGPNNPVGSVWI 296 Query: 314 EFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 + +TY +H TP+P V + +SGCVR+ N W + V Sbjct: 297 DL--SRDTYGIHGTPDPS---KVGKTFSSGCVRLTN--------------WDAEQLASKV 337 Query: 373 KTRKTTPVK 381 K + Sbjct: 338 KPGVRVTFR 346 >gi|304394045|ref|ZP_07375968.1| peptidoglycan-binding domain 1 protein [Ahrensia sp. R2A130] gi|303293485|gb|EFL87862.1| peptidoglycan-binding domain 1 protein [Ahrensia sp. R2A130] Length = 1176 Score = 42.5 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 17/32 (53%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 AV+ FQ G+ +G +D TL A+N+ Sbjct: 1145 PNTRKAVRDFQRSAGIPVTGEIDRETLRALNI 1176 >gi|329928325|ref|ZP_08282196.1| ErfK/YbiS/YcfS/YnhG [Paenibacillus sp. HGF5] gi|328937882|gb|EGG34287.1| ErfK/YbiS/YcfS/YnhG [Paenibacillus sp. HGF5] Length = 223 Score = 42.5 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ VQ ++ RL +G + F+ ++K +Q H L P+G+V S Sbjct: 156 RDLAEGDVGGDVQLIQSRLKSAGYYNGECDGKFRFNTT--ESLKKYQRDHHLIPNGVVSS 213 Query: 160 STLEAM 165 E + Sbjct: 214 KEYEEL 219 >gi|317047415|ref|YP_004115063.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. At-9b] gi|316949032|gb|ADU68507.1| ErfK/YbiS/YcfS/YnhG family protein [Pantoea sp. At-9b] Length = 354 Score = 42.5 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 49/228 (21%) Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRV 224 N VD+ + + NL+ ++L+ +++N L G K + + +G + Sbjct: 71 NPGVDVYLPKAGTNLVIPQQLILPDAPREGIVINSAEMRLYYYPKGTKTVVVLPIGIGEL 130 Query: 225 DRQTPI-LHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 + TPI + + R P W P + + A P+ Sbjct: 131 GKDTPINWTTSVQRKKAGPTWT-PTKAMHAEYAARGESIPEVF----------------- 172 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGC 343 G N M + H T F +R + GC Sbjct: 173 -----------------PAGPDNPMGLYALYIGRLYAV--HGTNAN--FGIGLR-VSHGC 210 Query: 344 VRVRNIIDLDVWLLKDTPTWSRYHI-----EEVVKTRKTTPVKLATEV 386 VR+ D+ WL + P +R + V+ + V++ + Sbjct: 211 VRL-RADDI-KWLFDNVPVGTRVQFIDQPVKATVEPDGSRYVEVHNPL 256 >gi|311031912|ref|ZP_07710002.1| carboxyl-terminal protease [Bacillus sp. m3-13] Length = 492 Score = 42.5 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 25/107 (23%) Query: 82 IAFYQDILSRGGW-------PELPIR----------------PLHLGNSSVSVQRLRERL 118 + Y+ + G W P +P++ L L +S V+ ++ L Sbjct: 362 LTLYKWLTPDGNWIHNDGVEPTIPVKQPDYFYANPINMEEEEELALDANSEKVKNVQVML 421 Query: 119 IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 G DP + F E AVK FQ + L SG VDS T E + Sbjct: 422 KGLGF-DPGREDG-YFSKETEDAVKSFQAENDLSTSGKVDSQTAEQL 466 >gi|303233761|ref|ZP_07320415.1| ErfK/YbiS/YcfS/YnhG [Finegoldia magna BVS033A4] gi|302495195|gb|EFL54947.1| ErfK/YbiS/YcfS/YnhG [Finegoldia magna BVS033A4] Length = 469 Score = 42.5 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTP 229 + +G Y+ +++ A L +GK+ L + V+ G TP Sbjct: 334 RSRNNGILGKSYIEISLGAQHLWYYRDGKLVLDTPVVTGDPSINHDTP 381 >gi|302380561|ref|ZP_07269026.1| ErfK/YbiS/YcfS/YnhG [Finegoldia magna ACS-171-V-Col3] gi|302311504|gb|EFK93520.1| ErfK/YbiS/YcfS/YnhG [Finegoldia magna ACS-171-V-Col3] Length = 469 Score = 42.5 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTP 229 + +G Y+ +++ A L +GK+ L + V+ G TP Sbjct: 334 RSRNNGILGKSYIEISLGAQHLWYYRDGKLVLDTPVVTGDPSINHDTP 381 >gi|299143670|ref|ZP_07036750.1| ErfK/YbiS/YcfS/YnhG family protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518155|gb|EFI41894.1| ErfK/YbiS/YcfS/YnhG family protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 260 Score = 42.5 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 10/106 (9%) Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 + +K FQ L +G ++ T + + N++ + +++V Sbjct: 41 VAEIKKFQALSNLTVTGKINDITKKVLYNS----------NMVVKDDIQNAPTSGEWIVV 90 Query: 199 NIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 N +L + + +G + TP +I NP W Sbjct: 91 NKTKKTLTFYSGTAPMYKFPIALGTNETPTPSAKGKIQSKHVNPAW 136 >gi|169824495|ref|YP_001692106.1| hypothetical protein FMG_0798 [Finegoldia magna ATCC 29328] gi|167831300|dbj|BAG08216.1| conserved hypothetical protein [Finegoldia magna ATCC 29328] Length = 469 Score = 42.5 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTP 229 + +G Y+ +++ A L +GK+ L + V+ G TP Sbjct: 334 RSRNNGILGKSYIEISLGAQHLWYYRDGKLVLDTPVVTGDPSINHDTP 381 >gi|126698130|ref|YP_001087027.1| putative spore peptidoglycan hydrolase [Clostridium difficile 630] gi|255099657|ref|ZP_05328634.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile QCD-63q42] gi|255305541|ref|ZP_05349713.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile ATCC 43255] gi|115249567|emb|CAJ67384.1| Spore cortex-lytic enzyme pre-pro-form [Clostridium difficile] Length = 423 Score = 42.5 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 3/87 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLD 152 P L +G+S V+ ++ +L + P+ + E+AVK+FQ GL Sbjct: 334 SFPGTTLQVGSSGQYVRTIQNQLNAISNSYPAVPKVIEDGIYGTDTENAVKIFQGIFGLP 393 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVN 179 SG+VD T ++ R +N Sbjct: 394 QSGVVDFKTWYEISRVYVATTRIASLN 420 >gi|255647293|gb|ACU24113.1| unknown [Glycine max] Length = 357 Score = 42.5 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFD-AYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S+ V +++ L G ++ S LS + D + SA+K +Q L P+G +++ TL+ M Sbjct: 74 SAPPVSLIKDYLSNYGYIESSGPLSNSMDQETIISAIKTYQQYFSLQPTGKLNNETLQQM 133 >gi|115380489|ref|ZP_01467464.1| ErfK/YbiS/YcfS/YnhG family [Stigmatella aurantiaca DW4/3-1] gi|115362504|gb|EAU61764.1| ErfK/YbiS/YcfS/YnhG family [Stigmatella aurantiaca DW4/3-1] Length = 278 Score = 42.5 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 85/271 (31%), Gaps = 78/271 (28%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-----GLDPS 154 + G V+ L+E L+ G P G AF AV+ FQ+ + + Sbjct: 35 GTIGPGARGTGVRALQEALLAMGFSLPG-GADGAFGKQSAKAVRNFQVHAQSAFPNVKAT 93 Query: 155 GMVDSSTLEAMNV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 G VD++TL+A++ P + Q Q + +P +G Sbjct: 94 GGVDAATLQALDALAPAPKQTGQ------------SQNLP-------VPRY------DGT 128 Query: 213 VGLRSTVIVGRVDRQTPIL--HSRINRIMFNPYWVI-----PRSIIQKDMMALLRQDPQY 265 V+V + + +T + ++ I N + P K + L + Y Sbjct: 129 PV---RVVVVKNEHRTFLFDAQGQLQGIFGN---AVGANSSPTDKGLKQVSGKLGRAEAY 182 Query: 266 LKDNNIHMIDEKGKEVF-VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMH 324 + G V+ +D + + G+ +H Sbjct: 183 ALGQKL-----WGGPVYGPRLIDLSWADGS------RSGEE-----------------LH 214 Query: 325 DTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 T P V + GC+R N + ++ Sbjct: 215 GTNAPDKLGEDV---SHGCIRHGNTDIIALY 242 >gi|75675836|ref|YP_318257.1| lytic murein transglycosylase [Nitrobacter winogradskyi Nb-255] gi|74420706|gb|ABA04905.1| Lytic murein transglycosylase [Nitrobacter winogradskyi Nb-255] Length = 407 Score = 42.5 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 VQ ++ RL +G + G AVK FQ R GL P G L + Sbjct: 349 AEVQEVQTRLTQAGF--DTGGTDGRVGNDTMKAVKDFQARVGLPPDGYAGLKVLAKL 403 >gi|197301806|ref|ZP_03166876.1| hypothetical protein RUMLAC_00532 [Ruminococcus lactaris ATCC 29176] gi|197299246|gb|EDY33776.1| hypothetical protein RUMLAC_00532 [Ruminococcus lactaris ATCC 29176] Length = 530 Score = 42.5 bits (99), Expect = 0.12, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTP 229 Q G Y V++ + + NG V L + V+ G+ DR TP Sbjct: 394 AQDWGSTYAEVDVTTQHMWYIVNGAVVLETDVVTGKPTPDRVTP 437 >gi|311694519|gb|ADP97392.1| peptidoglycan-binding domain 1 protein-like protein [marine bacterium HP15] Length = 373 Score = 42.5 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 24/34 (70%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 D + +A++ +Q ++GL +G +D++TL+A+ V Sbjct: 60 DEQLRAAIRAYQAQNGLQTNGNLDTATLKALGVT 93 >gi|291546019|emb|CBL19127.1| Putative peptidoglycan binding domain./L,D-transpeptidase catalytic domain [Ruminococcus sp. SR1/5] Length = 203 Score = 42.5 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Query: 178 VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR---VDRQTP--ILH 232 V MR +G Y+ V++ A L ++G + L S ++ G +RQTP I Sbjct: 124 VYAMRANARGMNDIGSTYIEVDLSAQHLYYYQDGSIILESDIVSGDMQYAERQTPPGIFS 183 Query: 233 SRIN 236 + + Sbjct: 184 TVLQ 187 >gi|209966451|ref|YP_002299366.1| hypothetical protein RC1_3190 [Rhodospirillum centenum SW] gi|209959917|gb|ACJ00554.1| hypothetical protein RC1_3190 [Rhodospirillum centenum SW] Length = 385 Score = 42.5 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 10/68 (14%) Query: 105 GNSSVS------VQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G+S V ++ RL G + + GL+ E+A++ FQ L G Sbjct: 313 GDSGPRPLDRAGVAEVQRRLKALGYPMGRADGLTG---PRTEAAIRAFQKDRRLTVDGRA 369 Query: 158 DSSTLEAM 165 ++ LE + Sbjct: 370 TAALLEQI 377 >gi|311070029|ref|YP_003974952.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus atrophaeus 1942] gi|310870546|gb|ADP34021.1| PDZ-containing carboxyl-terminal protease processing protease [Bacillus atrophaeus 1942] Length = 483 Score = 42.5 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 23/106 (21%) Query: 82 IAFYQDILSRGGW-------PELPIR--------------PLHLGNSSVSVQRLRERLII 120 + Y+ + G W P + I+ PL L ++ V+ + L+ Sbjct: 354 LTLYKWLTPNGNWIHKKGIKPTIAIKQPDYFEAGPLQLKQPLKLDMNNEDVKH-AQVLLK 412 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 DP + F ++ AV FQ ++ L+ SG++D T E MN Sbjct: 413 GLSFDPGRDDG-YFSEGMKKAVLAFQDQNKLNKSGVIDQRTAEKMN 457 >gi|222529956|ref|YP_002573838.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor bescii DSM 6725] gi|222456803|gb|ACM61065.1| ErfK/YbiS/YcfS/YnhG family protein [Caldicellulosiruptor bescii DSM 6725] Length = 223 Score = 42.5 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R ++ G++ V V ++ RL G + + +E A+ LFQ ++ L + + Sbjct: 154 RTIYPGDTGVDVMAVQRRLKELGIY--YGDIDGKYGPTLEYAINLFQKKNKLPVTNKITP 211 Query: 160 STLEAM 165 L M Sbjct: 212 YLLRKM 217 >gi|167766804|ref|ZP_02438857.1| hypothetical protein CLOSS21_01312 [Clostridium sp. SS2/1] gi|317498794|ref|ZP_07957082.1| peptidoglycan binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167711558|gb|EDS22137.1| hypothetical protein CLOSS21_01312 [Clostridium sp. SS2/1] gi|316893929|gb|EFV16123.1| peptidoglycan binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 419 Score = 42.5 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V++++++L I+ D P+ + + +AV+ FQ GL + Sbjct: 335 PGYDLTIGSSGDKVRQIQQQLNRIAKDYPSLPTIAVDGVYGESTANAVRKFQNVFGLPQT 394 Query: 155 GMVDSSTLE 163 G+VD T Sbjct: 395 GIVDYPTWY 403 >gi|312897678|ref|ZP_07757095.1| ErfK/YbiS/YcfS/YnhG [Megasphaera micronuciformis F0359] gi|310621311|gb|EFQ04854.1| ErfK/YbiS/YcfS/YnhG [Megasphaera micronuciformis F0359] Length = 355 Score = 42.5 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 5/70 (7%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +LVN + L + V VG+ TP + R+ NP W+ P +D Sbjct: 74 RILVNTASRILTLYRGKEKAAMYPVGVGKASTPTPSGYYRVETKEVNPEWIDP-----ED 128 Query: 255 MMALLRQDPQ 264 + P Sbjct: 129 TENRIASGPG 138 >gi|78044166|ref|YP_359174.1| putative peptidoglycan-binding protein [Carboxydothermus hydrogenoformans Z-2901] gi|77996281|gb|ABB15180.1| putative peptidoglycan-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 214 Score = 42.5 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 E+P R L +G+ V L+E L + G + F +E AV F+ +GL Sbjct: 142 QEIPWRTLVVGSKGSDVLILQELLKLKGYYSG--PIDGIFGRKMEKAVVKFRADYGLPSD 199 Query: 155 GMV 157 + Sbjct: 200 NRI 202 >gi|329938065|ref|ZP_08287516.1| lipoprotein [Streptomyces griseoaurantiacus M045] gi|329302554|gb|EGG46444.1| lipoprotein [Streptomyces griseoaurantiacus M045] Length = 293 Score = 42.5 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 55/160 (34%), Gaps = 32/160 (20%) Query: 98 PIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 P R L G+ V+ L+ RL L G + ++D AV FQ + GL +G Sbjct: 83 PARVLWSEGDHGRDVRELQARLKQVAWL--FDGPTGSYDDLTAKAVGGFQGKRGLPRTGR 140 Query: 157 VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL------------RYVLVNIPAAS 204 D+ T + R L + K L G R + ++ + + Sbjct: 141 ADTVTWQ----------RLLAMTHEPTKWELYAFGGQPAAPPDPRCTTGRVLCISKTSRT 190 Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L + +G+ V G T +F+ YW Sbjct: 191 LRWMIDGRTVSVMPVRFGTELTPT-------REGVFHVYW 223 >gi|56963635|ref|YP_175366.1| spore cortex-lytic enzyme [Bacillus clausii KSM-K16] gi|56909878|dbj|BAD64405.1| spore cortex-lytic enzyme [Bacillus clausii KSM-K16] Length = 296 Score = 42.5 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 2/69 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G + V L+ RL G + + F AV+ +Q +GL+ G+V Sbjct: 36 IQKGATGDDVVELQSRLQYVGYYNG--KIDGVFGWGTYWAVRHYQYEYGLEIDGLVGDDM 93 Query: 162 LEAMNVPVD 170 + D Sbjct: 94 KAKLASTTD 102 >gi|108763212|ref|YP_631448.1| hypothetical protein MXAN_3249 [Myxococcus xanthus DK 1622] gi|108467092|gb|ABF92277.1| hypothetical protein MXAN_3249 [Myxococcus xanthus DK 1622] Length = 197 Score = 42.5 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G S +++ +ERL G + S A +SAV+ FQ RHGL +G + Sbjct: 133 PGFESDALRAAQERLHNLGYAIEGERGSPG--ASTKSAVRAFQRRHGLPETGQL 184 >gi|66808293|ref|XP_637869.1| hypothetical protein DDB_G0286137 [Dictyostelium discoideum AX4] gi|60466300|gb|EAL64361.1| hypothetical protein DDB_G0286137 [Dictyostelium discoideum AX4] Length = 1009 Score = 42.5 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L + +V L L G LD + + + ESA++ FQ + + +G+ D S Sbjct: 430 LKSSTTGDAVSLLNYSLYSIGYLDEYNHSTREIYTSITESAIRKFQEDNNIPMTGVADFS 489 Query: 161 TLE 163 T+ Sbjct: 490 TIR 492 >gi|319651370|ref|ZP_08005499.1| sporulation specific N-acetylmuramoyl-L-alanine amidase [Bacillus sp. 2_A_57_CT2] gi|317396901|gb|EFV77610.1| sporulation specific N-acetylmuramoyl-L-alanine amidase [Bacillus sp. 2_A_57_CT2] Length = 279 Score = 42.5 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V L+ RL G + + F A++ FQ GL G+ T Sbjct: 41 GAVGNDVIELQSRLQYLGFYNG--KIDGVFGWGTYWALRNFQYEFGLPIDGLAGQETKNK 98 Query: 165 M 165 + Sbjct: 99 L 99 >gi|297199334|ref|ZP_06916731.1| peptidoglycan-binding membrane protein [Streptomyces sviceus ATCC 29083] gi|197715335|gb|EDY59369.1| peptidoglycan-binding membrane protein [Streptomyces sviceus ATCC 29083] Length = 72 Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVDS 159 L G+ V L RL G +D VE AV +Q + G+ + G+ D Sbjct: 2 LRRGSEGAEVVELELRLTQVGLYSRKAAG--HYDEGVEDAVAAYQWQRGVQVAEHGVYDL 59 Query: 160 STLEAM 165 T E + Sbjct: 60 VTRERL 65 >gi|92116826|ref|YP_576555.1| negative regulator of AmpC, AmpD [Nitrobacter hamburgensis X14] gi|91799720|gb|ABE62095.1| negative regulator of AmpC, AmpD [Nitrobacter hamburgensis X14] Length = 289 Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 8/79 (10%) Query: 92 GGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W P + L G+ V+ L++ L G S FD V FQ Sbjct: 191 GHWVRPSPIVRGDVLKTGSEGDDVRALQQSLARYGY---GIKASGTFDTPTMEVVTAFQR 247 Query: 148 RHGLD-PSGMVDSSTLEAM 165 + G+ D STL + Sbjct: 248 HFRPERVDGVADQSTLNTL 266 >gi|119945970|ref|YP_943650.1| peptidoglycan binding domain-containing protein [Psychromonas ingrahamii 37] gi|119864574|gb|ABM04051.1| Peptidoglycan-binding domain 1 protein [Psychromonas ingrahamii 37] Length = 221 Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V+R++E L + G + A+ +V FQ GL +G VD +T A Sbjct: 28 GMRGKEVKRVQEWLNLQG---VGVVIDSAYGPATTRSVVRFQDESGLSETGEVDDATFNA 84 Query: 165 MNVPVDLRIRQLQVNL 180 + P+ ++Q ++N Sbjct: 85 LVKPMRDVLKQ-RLNA 99 >gi|312114454|ref|YP_004012050.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rhodomicrobium vannielii ATCC 17100] gi|311219583|gb|ADP70951.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rhodomicrobium vannielii ATCC 17100] Length = 263 Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 10/80 (12%) Query: 92 GGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W P + L G+ +V+ L+++L G ++ A+D V+ FQ Sbjct: 173 GHWVEPAPIVEGDALDTGSCGAAVRELQKKLAAYGY---GIDVTGAYDDATRIVVRAFQ- 228 Query: 148 RHGLDP--SGMVDSSTLEAM 165 RH G D STL+ + Sbjct: 229 RHFRPALVDGRADPSTLKTL 248 >gi|220908597|ref|YP_002483908.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 7425] gi|219865208|gb|ACL45547.1| ErfK/YbiS/YcfS/YnhG family protein [Cyanothece sp. PCC 7425] Length = 204 Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 39/148 (26%), Gaps = 53/148 (35%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 + ++ +V V VG+ +TP R+ + NP Sbjct: 86 RVYLYQDDQVAASYPVAVGKPGWETPTGKFRVMHKVVNP--------------------- 124 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY---SRNN 320 + + V PG N + I F ++ Sbjct: 125 ---------VFENPFNGVVT-----------------PPGPGNPLGDRLIVFAKVGNKGY 158 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN 348 H T L + GCVR++N Sbjct: 159 AGFHGTTNEALIGQ---AVSHGCVRMKN 183 >gi|254501042|ref|ZP_05113193.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] gi|222437113|gb|EEE43792.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] Length = 249 Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 28/170 (16%) Query: 18 LILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQ 77 L+L + +SL + ++ LD IN F+ RV+ G S+ + Sbjct: 90 LVLDLQISLRKADLYEGPLDG-INGPATERAIRAFERKAGRVETGEASESLLALIWLHGT 148 Query: 78 TEKAIAFYQDILSRGGWPELP-IRPLHLG--------------NSSVSVQRLRERLIISG 122 A+ P +P +P+ G +S +++++ L G Sbjct: 149 DPAALTA----------PPVPRAKPVTSGTPRQNTQEEAATGVDSDPRLKKIQYALSELG 198 Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 + +A+K F++ GL +G + TLE + + R Sbjct: 199 Y--GPLTVDGLMGTNTAAALKRFELDRGLPITGEANPQTLERLEMVSGQR 246 >gi|222056276|ref|YP_002538638.1| Peptidoglycan-binding domain 1 protein [Geobacter sp. FRC-32] gi|221565565|gb|ACM21537.1| Peptidoglycan-binding domain 1 protein [Geobacter sp. FRC-32] Length = 264 Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 10/78 (12%) Query: 98 PIRPLHLGNSSVS-VQRLRERLIISGDLDPS---KGLSVAFDAYVESAVKLFQMRH---- 149 P R + +G V+ L+ RL DP+ + ++ VKLFQ R+ Sbjct: 4 PGRIIKVGEQDAVIVKALKLRLNKVLGSDPALRLDPDDPNYGPKMKQMVKLFQARNVDAA 63 Query: 150 G--LDPSGMVDSSTLEAM 165 G L G V S T ++ Sbjct: 64 GRPLKQDGEVGSLTWASL 81 >gi|288556068|ref|YP_003428003.1| spore cortex-lytic enzyme [Bacillus pseudofirmus OF4] gi|288547228|gb|ADC51111.1| spore cortex-lytic enzyme [Bacillus pseudofirmus OF4] Length = 348 Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 2/69 (2%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G + V L+ RL G + + + AV+ +Q GLD G+V Sbjct: 37 IQQGATGDDVVELQSRLQYIGFYNG--KIDGVYGWGTYWAVRNYQYEFGLDIDGLVGPEM 94 Query: 162 LEAMNVPVD 170 E + + Sbjct: 95 KEMLAKSTE 103 >gi|158313774|ref|YP_001506282.1| peptidoglycan binding domain-containing protein [Frankia sp. EAN1pec] gi|158109179|gb|ABW11376.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EAN1pec] Length = 187 Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%) Query: 113 RLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ RL+ G L G + A AV Q GL+ G+V +T ++ Sbjct: 3 ALQRRLVELGYWLGEPNG---IYGALTVQAVLAAQKVAGLERDGLVGPATWASL 53 >gi|149914813|ref|ZP_01903343.1| lytic murein transglycosylase [Roseobacter sp. AzwK-3b] gi|149811606|gb|EDM71441.1| lytic murein transglycosylase [Roseobacter sp. AzwK-3b] Length = 432 Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 12/97 (12%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 +A + AI + + GW L + S + ++ L G D V Sbjct: 348 LAGIQDAI---EAVAGACGWSTLDL-------SRDDYRAIQTMLNAGGF-DAGTPDGVWG 396 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + A++ FQ ++GL +G D TLEA+ V Sbjct: 397 NGS-RKAMRAFQEQNGLPATGAPDRVTLEALGVSPSD 432 >gi|255525438|ref|ZP_05392376.1| Peptidoglycan-binding domain 1 protein [Clostridium carboxidivorans P7] gi|296187864|ref|ZP_06856258.1| hypothetical protein CLCAR_3370 [Clostridium carboxidivorans P7] gi|255510905|gb|EET87207.1| Peptidoglycan-binding domain 1 protein [Clostridium carboxidivorans P7] gi|296047821|gb|EFG87261.1| hypothetical protein CLCAR_3370 [Clostridium carboxidivorans P7] Length = 302 Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 18/94 (19%) Query: 76 AQTEKAIAFYQD---ILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 +T KA+ Y + I + G+ + + ++++LI G + G Sbjct: 105 PKTAKALLKYVNNTSIDDKNGFTPVSVN-------------IQKQLIDLGYKINANGNLS 151 Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 ++D + A++ FQ + L +G VD + L +N Sbjct: 152 SYDTML--AIRQFQKTNNLSVTGKVDINLLNKLN 183 Score = 42.1 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 7/77 (9%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + L N S V+ ++ L + + + E AVK Q + G++ G+ Sbjct: 49 TIKLNNKSDIVKHIQVTLNL--YFGSGLAEDGVYGNFTEDAVKSVQKKLGINVDGIFGPK 106 Query: 161 TLEAM-----NVPVDLR 172 T +A+ N +D + Sbjct: 107 TAKALLKYVNNTSIDDK 123 >gi|119909119|ref|XP_590696.3| PREDICTED: matrix metalloproteinase 17 [Bos taurus] gi|297484686|ref|XP_002694502.1| PREDICTED: MMP17 protein-like [Bos taurus] gi|296478663|gb|DAA20778.1| MMP17 protein-like [Bos taurus] Length = 591 Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 2/73 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 51 LSRFGYLPPADPETGQLQTPEELSKAIVAMQQFGGLEATGVLDEATLALMKTPRCSLPDL 110 Query: 176 LQVNLMRIKKLLE 188 V L R ++ Sbjct: 111 PAVALARRRRQAP 123 >gi|110634368|ref|YP_674576.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Mesorhizobium sp. BNC1] gi|110285352|gb|ABG63411.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Chelativorans sp. BNC1] Length = 251 Score = 42.5 bits (99), Expect = 0.14, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 4/61 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-SGMVDSS 160 L G+ +V L+ RL G + FDA E+ V FQ +G+ DSS Sbjct: 181 LAPGDRGSAVAGLQRRLAEYGY---GIEKTGVFDAETETVVAAFQRHFRPSAVNGIADSS 237 Query: 161 T 161 T Sbjct: 238 T 238 >gi|294500843|ref|YP_003564543.1| N-acetylmuramoyl-L-alanine amidase [Bacillus megaterium QM B1551] gi|294350780|gb|ADE71109.1| N-acetylmuramoyl-L-alanine amidase [Bacillus megaterium QM B1551] Length = 344 Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 5/72 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD--P 153 LP L G+S +V++L+ L + + + AV+ FQ+ + L Sbjct: 268 PLPNGILKQGDSGEAVKQLQRALNAVNF--KVGSVDGIYGVQTKDAVRRFQLVY-LPYDV 324 Query: 154 SGMVDSSTLEAM 165 G+ T + Sbjct: 325 DGIYGPQTKNKL 336 >gi|310826913|ref|YP_003959270.1| Peptidoglycan-binding lysin domain protein [Eubacterium limosum KIST612] gi|308738647|gb|ADO36307.1| Peptidoglycan-binding lysin domain protein [Eubacterium limosum KIST612] Length = 331 Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + +++E L G G + +A+K FQ ++GL+ G+ T A+ + Sbjct: 276 TEIAQIQETLKRQGYDIAIDGGAG---PISIAALKDFQTKNGLEADGICGDLTRAALGI 331 >gi|323706377|ref|ZP_08117941.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323534271|gb|EGB24058.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 418 Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + R L+ G V L+ L G + + F + V FQ L G Sbjct: 33 QFGSRLLYTGTYGTDVSELQSILNSIGF--STGAIDGVFGNNTLNGVLAFQKAENLVADG 90 Query: 156 MVDSSTLEAM 165 +V +T A+ Sbjct: 91 IVGPNTYNAI 100 >gi|269956385|ref|YP_003326174.1| peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] gi|269305066|gb|ACZ30616.1| Peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] Length = 359 Score = 42.5 bits (99), Expect = 0.15, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 96 ELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 E+P R L G V +++ L +G L FD +AV+ +Q G++ Sbjct: 113 EVPAFRDLFQGAKGADVAQVQRFLAGAGFLTGEADGD--FDPATATAVRAWQKSLGVERD 170 Query: 155 GMV 157 G+V Sbjct: 171 GVV 173 >gi|47567393|ref|ZP_00238106.1| carboxyl-terminal protease [Bacillus cereus G9241] gi|47568463|ref|ZP_00239163.1| carboxyl-terminal protease [Bacillus cereus G9241] gi|47554854|gb|EAL13205.1| carboxyl-terminal protease [Bacillus cereus G9241] gi|47556014|gb|EAL14352.1| carboxyl-terminal protease [Bacillus cereus G9241] Length = 469 Score = 42.1 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 380 KTLSYNSNDVQVKHAQEMLKSLGYVTGREDG--YFSKETESALKAFQNANKMEATGQLDK 437 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 438 KTAEAIQTKIIEKIR 452 >gi|47569287|ref|ZP_00239972.1| carboxyl-terminal protease [Bacillus cereus G9241] gi|47554058|gb|EAL12424.1| carboxyl-terminal protease [Bacillus cereus G9241] Length = 494 Score = 42.1 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVTGREDG--YFSKETESALKAFQNANKMEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR 174 T EA+ + +IR Sbjct: 463 KTAEAIQTKIIEKIR 477 >gi|291299239|ref|YP_003510517.1| peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] gi|290568459|gb|ADD41424.1| Peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] Length = 198 Score = 42.1 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 6/70 (8%) Query: 106 NSSVSVQRL-RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 + + L + L G L S+ + F A K +Q H LD G V S T A Sbjct: 68 SRGTDLVLLWQSILAADGYLPGSE-IDGYFGDRTAEATKEWQSDHDLDSDGRVGSKTWAA 126 Query: 165 ----MNVPVD 170 MNV D Sbjct: 127 ADDNMNVDSD 136 >gi|295706189|ref|YP_003599264.1| N-acetylmuramoyl-L-alanine amidase [Bacillus megaterium DSM 319] gi|294803848|gb|ADF40914.1| N-acetylmuramoyl-L-alanine amidase [Bacillus megaterium DSM 319] Length = 346 Score = 42.1 bits (98), Expect = 0.15, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 5/72 (6%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD--P 153 LP L G+S +V++L++ L + + + AV+ FQ+ + L Sbjct: 270 PLPNGILKQGDSGEAVKQLQKALNAVNF--KVGPVDGIYGVQTKDAVRRFQLVY-LPYDV 326 Query: 154 SGMVDSSTLEAM 165 G+ T + Sbjct: 327 DGIYGPQTKNKL 338 >gi|328544535|ref|YP_004304644.1| Lysozyme [polymorphum gilvum SL003B-26A1] gi|326414277|gb|ADZ71340.1| Lysozyme [Polymorphum gilvum SL003B-26A1] Length = 291 Score = 42.1 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 4/52 (7%) Query: 116 ERLIISGDLDPSKGLSVAFD-AYVESAVKLFQMRHG-LDPSGMVDSSTLEAM 165 +RL+ S L G FD +AV FQ H L G + +T A+ Sbjct: 178 QRLLAS--LGYRPGPVDGFDGPRTRAAVMRFQQDHPPLSVDGRIGPATRAAL 227 >gi|298241485|ref|ZP_06965292.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Ktedonobacter racemifer DSM 44963] gi|297554539|gb|EFH88403.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Ktedonobacter racemifer DSM 44963] Length = 381 Score = 42.1 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 43/125 (34%), Gaps = 22/125 (17%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDL 124 S P + +E A+ + G PE L G +V+ L+ L G Sbjct: 222 SKFPQLRREVAAKLGQ------------GMPERTWVDLRWGVRGDTVRALQYVLRAQG-- 267 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-------NVPVDLRIRQLQ 177 +S +D V FQ G+ P G + T EA+ N + +Q Sbjct: 268 -SDIMISGTYDDPTYKLVTAFQSAKGIAPDGYTRNDTWEALVGAIRLDNQSQGDYVNAVQ 326 Query: 178 VNLMR 182 V L R Sbjct: 327 VILKR 331 >gi|225427816|ref|XP_002275758.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 391 Score = 42.1 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G+ +Q++++ L G + + S F+ +ES++K FQ + L+ +G +D+ Sbjct: 183 KKGDKREGIQKVKQYLQRYGYISSTHYSQMGSDDFNDALESSLKAFQTFYHLNSTGTLDA 242 Query: 160 STLEAMNVP 168 +T M+ P Sbjct: 243 ATATLMSRP 251 >gi|325262717|ref|ZP_08129453.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Clostridium sp. D5] gi|324031811|gb|EGB93090.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Clostridium sp. D5] Length = 465 Score = 42.1 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 181 MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV-DRQTP 229 R Q G ++ V++ A + + +G V + V+ G+ + TP Sbjct: 324 QRGATHEAQDWGKTFIEVDLSAQYMWYIVDGNVAFETAVVTGKPYEHSTP 373 >gi|152990232|ref|YP_001355954.1| hypothetical protein NIS_0483 [Nitratiruptor sp. SB155-2] gi|151422093|dbj|BAF69597.1| hypothetical protein [Nitratiruptor sp. SB155-2] Length = 185 Score = 42.1 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 7/56 (12%) Query: 115 RERLIISGDLDPSKGLSVAF----DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 R +L D+ K F + +E+A+K Q G+ G+V TL+A+N Sbjct: 89 RAKLY---DVQSQKIAEEIFVFGVNTGIENAIKKAQELVGVKVDGIVGPKTLKALN 141 >gi|329890511|ref|ZP_08268854.1| N-acetylmuramoyl-L-alanine amidase amiD [Brevundimonas diminuta ATCC 11568] gi|328845812|gb|EGF95376.1| N-acetylmuramoyl-L-alanine amidase amiD [Brevundimonas diminuta ATCC 11568] Length = 253 Score = 42.1 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 4/66 (6%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDS 159 PL G+ + V LR L G A+D V+ FQ D G+ D Sbjct: 174 PLSPGDEGLGVIVLRSGLHRLGY---GVQPGGAYDEETRLTVEAFQRHWRPDRVDGIADG 230 Query: 160 STLEAM 165 T + Sbjct: 231 ETRARL 236 >gi|296086490|emb|CBI32079.3| unnamed protein product [Vitis vinifera] Length = 334 Score = 42.1 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 H G+ + + +L+E G + S FD E A+K +Q+ L+ +G +D +TL Sbjct: 62 HAGDKADGLAKLKEYFHYFGYIHNSNYTDD-FDDAFEQALKTYQLNFNLNTTGQLDEATL 120 Query: 163 EAMNVP 168 + P Sbjct: 121 NQIVSP 126 >gi|225424789|ref|XP_002267298.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 364 Score = 42.1 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 H G+ + + +L+E G + S FD E A+K +Q+ L+ +G +D +TL Sbjct: 53 HAGDKADGLAKLKEYFHYFGYIHNSNYTDD-FDDAFEQALKTYQLNFNLNTTGQLDEATL 111 Query: 163 EAMNVP 168 + P Sbjct: 112 NQIVSP 117 >gi|256852003|ref|ZP_05557390.1| periplasmic protease [Lactobacillus jensenii 27-2-CHN] gi|260661428|ref|ZP_05862341.1| periplasmic protease [Lactobacillus jensenii 115-3-CHN] gi|256615415|gb|EEU20605.1| periplasmic protease [Lactobacillus jensenii 27-2-CHN] gi|260547883|gb|EEX23860.1| periplasmic protease [Lactobacillus jensenii 115-3-CHN] Length = 341 Score = 42.1 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 14/84 (16%) Query: 84 FYQDILSRGGWPELPIRPLHLGNSSVSVQ--RLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y I P + +LG + V+ + RL G ++ +A Sbjct: 106 QYNQIQ-----PSIYAPGYNLGYNYEGVKTWLVMRRL---GTYAGYAN----YNWATVNA 153 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAM 165 VK FQ HGL+P+G+VD +T + Sbjct: 154 VKNFQASHGLNPTGIVDLATWLKL 177 >gi|224138608|ref|XP_002326645.1| predicted protein [Populus trichocarpa] gi|222833967|gb|EEE72444.1| predicted protein [Populus trichocarpa] Length = 365 Score = 42.1 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 105 GNSSVSVQRLRERLIISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ + L+E G L + FD ESAV +Q GL +G +DS T+ Sbjct: 61 GSQVSGMSELKEYFNRFGYLPIPDENNFTDIFDKQFESAVIAYQTNLGLPVTGKLDSDTI 120 Query: 163 EAMNVP 168 M P Sbjct: 121 SMMVSP 126 >gi|163758707|ref|ZP_02165794.1| hypothetical protein HPDFL43_14827 [Hoeflea phototrophica DFL-43] gi|162283997|gb|EDQ34281.1| hypothetical protein HPDFL43_14827 [Hoeflea phototrophica DFL-43] Length = 319 Score = 42.1 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDSSTLEAM 165 LI G L + + V SAV+ FQ H L G++ +TL+ + Sbjct: 196 LIKLGYLADAARGDM---KRVRSAVRRFQEAHPQLSNDGVMGRATLDQL 241 >gi|317472853|ref|ZP_07932161.1| autolytic lysozyme [Anaerostipes sp. 3_2_56FAA] gi|316899653|gb|EFV21659.1| autolytic lysozyme [Anaerostipes sp. 3_2_56FAA] Length = 315 Score = 42.1 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 21/106 (19%) Query: 70 ISKETIAQTEKAIAF--YQDILSRGGWPELPIRP--------LHLGNSSVSVQRLRERLI 119 K ++ + +KAI Y + + G L + + G+ V ++E++ Sbjct: 219 AKKASVLKLQKAINKDKYAKLTANG---VLDSKTKNAMKKIFIKRGSRGAVVSFVQEKVK 275 Query: 120 ISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +S D +A++ +Q +HGL G+ TL M Sbjct: 276 VSQDGICGAKT--------VAAIRKYQRKHGLSVDGIAGYDTLRRM 313 >gi|209524668|ref|ZP_03273215.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] gi|209494812|gb|EDZ95120.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] Length = 401 Score = 42.1 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-- 165 + L++RL G + + + A+ FQ+ GL+ +G+V+ T +++ Sbjct: 71 DYDIIELQKRLQEKGYYLGA--IDGIYGEKTREAISNFQLSIGLESTGIVNQETWDSLLG 128 Query: 166 NVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNI 200 N + Q +N M G V +N Sbjct: 129 NSAAVSQANQ-SLNSMSPDLQKIMDRGELIVAINQ 162 >gi|162454953|ref|YP_001617320.1| N-acetylmuramoyl-L-alanine amidase [Sorangium cellulosum 'So ce 56'] gi|161165535|emb|CAN96840.1| N-acetylmuramoyl-L-alanine amidase [Sorangium cellulosum 'So ce 56'] Length = 217 Score = 42.1 bits (98), Expect = 0.16, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 14/84 (16%) Query: 94 WPELPIR----------PLHLGNSSV-SVQR-LRERLIISGDLDPSKGLSVAFDAYVESA 141 WP+ P L LG+ V ++ RL G + +A Sbjct: 129 WPDTPGNETARAGGVTWALKLGHLDPIEVPSGVQGRLKNLGYFSREVDGKDG--PELANA 186 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAM 165 V +Q GL P+G++D +T + Sbjct: 187 VAWYQSASGLTPTGVLDDATRAKL 210 >gi|294501799|ref|YP_003565499.1| C-terminal processing peptidase [Bacillus megaterium QM B1551] gi|295707148|ref|YP_003600223.1| C-terminal processing peptidase [Bacillus megaterium DSM 319] gi|294351736|gb|ADE72065.1| C-terminal processing peptidase [Bacillus megaterium QM B1551] gi|294804807|gb|ADF41873.1| C-terminal processing peptidase [Bacillus megaterium DSM 319] Length = 479 Score = 42.1 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 ++ +PL + V+ + L G F E+AV FQ + +G Sbjct: 386 QVDKKPLTRDMTGDQVKNAQVMLKGLGFEPG--RTDGYFSKETETAVTAFQKANKQKATG 443 Query: 156 MVDSSTLEAMNVPVDLRI------RQLQVNL 180 +D T + + +I RQLQ L Sbjct: 444 EIDEDTAALLQTKLLEKIKSKDEDRQLQTAL 474 >gi|271961885|ref|YP_003336081.1| hypothetical protein Sros_0306 [Streptosporangium roseum DSM 43021] gi|270505060|gb|ACZ83338.1| hypothetical protein Sros_0306 [Streptosporangium roseum DSM 43021] Length = 401 Score = 42.1 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 2/58 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R L G V++L L G + + AV +Q GLD +G V Sbjct: 159 RTLAQGVEGPDVRQLERNLKALGY--GGFTVDEEYTYATAEAVMRWQEDRGLDETGTV 214 >gi|284034110|ref|YP_003384041.1| peptidoglycan-binding domain 1 protein [Kribbella flavida DSM 17836] gi|283813403|gb|ADB35242.1| Peptidoglycan-binding domain 1 protein [Kribbella flavida DSM 17836] Length = 342 Score = 42.1 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R L G+ V +L + L G + Y AV+ +Q GL +G V Sbjct: 104 RRLTSGSEGPDVLQLEQNLQALGY--DGFTADDEYTLYTAEAVEQWQEDRGLAETGSV 159 >gi|172051608|emb|CAQ35003.1| hypothetical protein [Photobacterium damselae subsp. piscicida] Length = 464 Score = 42.1 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 60/178 (33%), Gaps = 16/178 (8%) Query: 5 LKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNF-LARVDMGI 63 L + +I +C + + +++ ++I+N+ + R+ +R + + Sbjct: 152 LSVPEIRWCIREGIRIEAMRDIIDNNTGIDEFNQIVNDYNSRCGSYRYREGSQSRAERDV 211 Query: 64 DSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL------HLGNSSVSVQRLRER 117 ++ I E I + + YQ +P + + + Sbjct: 212 EAYRSQIVSEAIREARQLGHSYQ-----PSYPSVSPGVSTSTALKKPNAQYTREAQ--QL 264 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G DP + AVK FQ GL G V S LE + + + R+ Sbjct: 265 LTDLGY-DPGPVDGD-YGRRTADAVKAFQKAQGLTVDGWVSKSLLETLRLATSKKTRK 320 >gi|254559628|ref|YP_003066723.1| N-acetylmuramoyl-L-alanine amidase [Methylobacterium extorquens DM4] gi|254266906|emb|CAX22705.1| N-acetylmuramoyl-L-alanine amidase (AGR_C_3833p) [Methylobacterium extorquens DM4] Length = 250 Score = 42.1 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 21/129 (16%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE---------LPIRPLH- 103 +AR+ I I +A ++ A A +D W +P P+ Sbjct: 117 AAVARLARDIVVRRAIPGPRVLAHSDVAPARKEDPGEDFPWERLAREGVGHWVPPAPVRD 176 Query: 104 -----LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP--SGM 156 +G++ V+ L+ L + G P G FDA + + V FQ RH G+ Sbjct: 177 GRFFAMGDTGQPVEALQAMLALYGYEQPVTG---HFDAAMRAVVTAFQ-RHFRPARIDGV 232 Query: 157 VDSSTLEAM 165 DSST+ + Sbjct: 233 ADSSTITTL 241 >gi|213691418|ref|YP_002322004.1| Peptidoglycan-binding domain 1 protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522879|gb|ACJ51626.1| Peptidoglycan-binding domain 1 protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457489|dbj|BAJ68110.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 350 Score = 42.1 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 57/172 (33%), Gaps = 16/172 (9%) Query: 2 VGYLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDM 61 +G L ++ + P GLS P + + ++ +F + Sbjct: 14 LGMLSAGVLVTALVIPTPTPDGLSAATSPDTVTASRQQFDDERTVEA-----SFETSAEQ 68 Query: 62 GIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHL-------GNSSVSVQRL 114 + S ET+ +A+ + +LS G P + + G++ V L Sbjct: 69 SLTSRAAGTVSETLCMPGQAVESGKRLLSVDGKPVIALHTDTPLYREIGTGDTGPDVLAL 128 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGMVDSSTLEAM 165 ++ L G + + + + V + G +P G + + + + Sbjct: 129 QQELARLGY---NAEGNGTYGWRTKDGVNQLLSQAGDRNPDGRIGPTDVAWL 177 >gi|239943286|ref|ZP_04695223.1| hypothetical protein SrosN15_19988 [Streptomyces roseosporus NRRL 15998] gi|239989744|ref|ZP_04710408.1| hypothetical protein SrosN1_20750 [Streptomyces roseosporus NRRL 11379] Length = 358 Score = 42.1 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 6/135 (4%) Query: 29 KPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ-- 86 P A+V+ + + V+ R D R ++ + A Y+ Sbjct: 42 PPATATVVRTDLVLART--VDGRIDFAQRRAVKAAVEGTVTVAAAEGRTVRRGEALYELN 99 Query: 87 DILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 D + +P R + G+ V +L L G + + E+AVK + Sbjct: 100 DKPVTLLYGPVPAFREMKTGHRGSDVLQLERNLRDLGY-GAGLHVDTEYGEDTEAAVKRW 158 Query: 146 QMRHGLDPSGMVDSS 160 Q + +G V Sbjct: 159 QKHLNRETTGRVGRG 173 >gi|291560617|emb|CBL39417.1| Putative peptidoglycan-binding domain-containing protein [butyrate-producing bacterium SSC/2] Length = 128 Score = 42.1 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V++++++L I+ D P+ + + +AV+ FQ GL + Sbjct: 44 PGYDLTIGSSGDKVRQIQQQLNRIAKDYPSLPTIAVDGVYGESTANAVRKFQNVFGLPQT 103 Query: 155 GMVDSSTLE 163 G+VD T Sbjct: 104 GIVDYPTWY 112 >gi|218437745|ref|YP_002376074.1| peptidoglycan-binding protein [Cyanothece sp. PCC 7424] gi|218170473|gb|ACK69206.1| Peptidoglycan-binding domain 1 protein [Cyanothece sp. PCC 7424] Length = 531 Score = 42.1 bits (98), Expect = 0.17, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 8/83 (9%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P R L G+ V+ ++ L + F+ ++AVK FQ + GL Sbjct: 283 PMTLTRILRWGDKGDDVKAVQCALNRFN--CNAGAEDGEFEDQTQAAVKAFQFKAGLLVD 340 Query: 155 GMVDSSTLEAMN------VPVDL 171 G V T E + VP D Sbjct: 341 GEVGPLTAEKLGFKVTVIVPPDQ 363 >gi|304393365|ref|ZP_07375293.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] gi|303294372|gb|EFL88744.1| peptidoglycan binding domain-containing protein [Ahrensia sp. R2A130] Length = 308 Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V++L+++L +G + S G F + ++ FQ +G SGMV + Sbjct: 207 LKFGDRGPRVKQLQDQLKNAGYMVVSDG---IFGLDTDKELRNFQRDNGFAISGMVGHAE 263 Query: 162 LEAMNVPVD 170 + Sbjct: 264 WAKLGGSTA 272 >gi|147676430|ref|YP_001210645.1| hypothetical protein PTH_0095 [Pelotomaculum thermopropionicum SI] gi|146272527|dbj|BAF58276.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 185 Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 20/48 (41%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++L+N+ L E ++ V VG+ TP I + NP Sbjct: 12 HILINLATRQLSYFEGSRLMNTYPVGVGKPSTPTPTGKYSIIEKIMNP 59 >gi|295101499|emb|CBK99044.1| Putative peptidoglycan-binding domain-containing protein [Faecalibacterium prausnitzii L2-6] Length = 230 Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 1/58 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+ V L++ L G + F + E A+K FQ R L G+ Sbjct: 152 TLRRGSRGCYVMILQDALSTLGY-QTGNRIDGIFGSRTEEALKGFQRRTSLRADGVCG 208 >gi|326777537|ref|ZP_08236802.1| Peptidoglycan-binding domain 1 protein [Streptomyces cf. griseus XylebKG-1] gi|326657870|gb|EGE42716.1| Peptidoglycan-binding domain 1 protein [Streptomyces cf. griseus XylebKG-1] Length = 358 Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 6/135 (4%) Query: 29 KPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ-- 86 P A+V+ + V+ R D RV ++ ++ A Y+ Sbjct: 42 PPATAAVVRTDLV--LSKTVDGRIDFAQRRVVKAAVEGTVTVAAVEGGTVKRGEALYELN 99 Query: 87 DILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 D + +P R + +G+ V +L L G + + ESAVK + Sbjct: 100 DKPVTLLYGPVPAFREMKVGDRGSDVLQLERNLRDLGY-GTGLYVDTEYGKDTESAVKQW 158 Query: 146 QMRHGLDPSGMVDSS 160 Q + +G V Sbjct: 159 QKHLNRETTGRVGRG 173 >gi|182436925|ref|YP_001824644.1| hypothetical protein SGR_3132 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465441|dbj|BAG19961.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 358 Score = 42.1 bits (98), Expect = 0.18, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 6/135 (4%) Query: 29 KPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ-- 86 P A+V+ + V+ R D RV ++ ++ A Y+ Sbjct: 42 PPATAAVVRTDLV--LSKTVDGRIDFAQRRVVKAAVEGTVTVAAVEGGTVKRGEALYELN 99 Query: 87 DILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 D + +P R + +G+ V +L L G + + ESAVK + Sbjct: 100 DKPVTLLYGPVPAFREMKVGDRGSDVLQLERNLRDLGY-GTGLYVDTEYGKDTESAVKQW 158 Query: 146 QMRHGLDPSGMVDSS 160 Q + +G V Sbjct: 159 QKHLNRETTGRVGRG 173 >gi|119490227|ref|ZP_01622740.1| probable phage-related lysozyme [Lyngbya sp. PCC 8106] gi|119454113|gb|EAW35266.1| probable phage-related lysozyme [Lyngbya sp. PCC 8106] Length = 284 Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 19/33 (57%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 FD ++A+K FQ + LDP G+V T+ + Sbjct: 250 VFDLETDAAMKKFQAQKRLDPDGLVGPITITEL 282 >gi|331090953|ref|ZP_08339795.1| hypothetical protein HMPREF9477_00438 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405175|gb|EGG84711.1| hypothetical protein HMPREF9477_00438 [Lachnospiraceae bacterium 2_1_46FAA] Length = 421 Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G+S V++L+E+L +I+G P + +AVK FQ GL + Sbjct: 337 PGYDLENGSSGDKVRQLQEQLNVIAGAYPAIPKITADGIYGPATAAAVKKFQSIFGLPDT 396 Query: 155 GMVDSSTLE 163 G+ D T Sbjct: 397 GITDYPTWY 405 >gi|147677766|ref|YP_001211981.1| hypothetical protein PTH_1431 [Pelotomaculum thermopropionicum SI] gi|146273863|dbj|BAF59612.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 218 Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P P L G+ V ++ L G L + E AVK F+ +GL Sbjct: 146 GAPGTPPSVLKYGDKGPDVLEVQRSLKRLGYL--QWTPDGFWGNGTERAVKKFREDNGLK 203 Query: 153 PSGMVDSSTLEAM 165 S +VD + + Sbjct: 204 GSVIVDEQVYKLL 216 >gi|126272561|ref|XP_001367626.1| PREDICTED: similar to putative matrix metalloproteinase [Monodelphis domestica] Length = 574 Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 21/125 (16%) Query: 46 SIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLG 105 + + + D + + + + A Q LS+ GW E Sbjct: 18 APWPSQPEKLFHSRDHSDLKESVLRQAKPVTDLHSA----QLFLSKYGWTEGSSGG---T 70 Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLE 163 SS + L PS D + A+ FQ + L +G +D +TL Sbjct: 71 ASSPDI------------LGPSTDDKPPMDGNPGLREAIAKFQSFNRLPVTGQLDKATLA 118 Query: 164 AMNVP 168 AMN P Sbjct: 119 AMNQP 123 >gi|317419770|emb|CBN81806.1| Matrix metalloproteinase-16 [Dicentrarchus labrax] Length = 591 Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L + + ++SA+ Q R+GL+ +G +DS+T+E M P Sbjct: 29 LQRYGYLPSADPRMSVLRSARVMQSAIAAMQRRYGLNVTGTLDSNTIEWMKRP 81 >gi|295696513|ref|YP_003589751.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus tusciae DSM 2912] gi|295412115|gb|ADG06607.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus tusciae DSM 2912] Length = 216 Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P +R L G+ V +++RL G + F ++A+K F+ L Sbjct: 142 GDPLKYMRRLKDGDIGTDVWLVQDRLRRLGFYRG--PCNGRFSLSTQAALKAFERSQHLP 199 Query: 153 PSGMVDSSTLEAM 165 G+V A+ Sbjct: 200 VDGVVSVRDYHAL 212 >gi|257462709|ref|ZP_05627117.1| hypothetical protein FuD12_02594 [Fusobacterium sp. D12] gi|317060351|ref|ZP_07924836.1| predicted protein [Fusobacterium sp. D12] gi|313686027|gb|EFS22862.1| predicted protein [Fusobacterium sp. D12] Length = 128 Score = 42.1 bits (98), Expect = 0.19, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 13/54 (24%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + RL G +AV+ FQ +GL P G V +T+ + Sbjct: 83 KEIDRRLSSLGYTGK-------------NAVREFQTDYGLVPDGKVGRNTIRVL 123 >gi|307324793|ref|ZP_07603999.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Streptomyces violaceusniger Tu 4113] gi|306889675|gb|EFN20655.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Streptomyces violaceusniger Tu 4113] Length = 391 Score = 41.7 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 3/70 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ---MRHGLDPSGMVD 158 +G SS + + +RLI G ++ + +Q HG D G+ Sbjct: 232 FRVGRSSPVISAVAKRLIAEGCDSYDTPPGQVWNDAHRRSYAAYQIKRGHHGADADGIPG 291 Query: 159 SSTLEAMNVP 168 T + VP Sbjct: 292 PETWADLRVP 301 >gi|237756813|ref|ZP_04585300.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237691029|gb|EEP60150.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 468 Score = 41.7 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 49/204 (24%) Query: 168 PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEA---VENGKVGLRSTVIVGRV 224 P D+R Q+ V ++ + L + + +NI L + + + + +G Sbjct: 257 PFDIRKNQIIVVPLK-RILPVKDFKYGTIYINIYEKRLYYPIKINDESYVITYPIGIGTD 315 Query: 225 DRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVE 284 D Q+PI +I++ +P W P SI +K+ Sbjct: 316 DAQSPIGEFKISQKRKDPAWYPPESI-RKE------------------------------ 344 Query: 285 EVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCV 344 P+ PG N + + + + + MH T + V + GC+ Sbjct: 345 --------QPDLPPVFPPGPDNPLGTRAMRLGNT-SFLMHGTNKEYGIGMKV---SHGCI 392 Query: 345 RV--RNIIDLDVWLLKDTPTWSRY 366 R+ ++ L + TP SR Sbjct: 393 RMYNEDVEKLFEVVDIGTPIVSRE 416 >gi|229087658|ref|ZP_04219785.1| Carboxyl-terminal protease [Bacillus cereus Rock3-44] gi|228695652|gb|EEL48510.1| Carboxyl-terminal protease [Bacillus cereus Rock3-44] Length = 494 Score = 41.7 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 8/87 (9%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L + V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNANDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEVTGQLDK 462 Query: 160 STLEAMNVPVDLRIR------QLQVNL 180 T EA+ + +IR QLQ L Sbjct: 463 KTAEALQNKIIEKIRSGENDMQLQAAL 489 >gi|322703990|gb|EFY95590.1| carbohydrate-binding protein [Metarhizium anisopliae ARSEF 23] Length = 619 Score = 41.7 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 16/48 (33%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L G L+ + +A+K +Q H L G T M Sbjct: 46 LSAYGYLESQDADTGKVGENTIAALKDYQKFHKLKVDGKFGEKTRHLM 93 >gi|304405010|ref|ZP_07386670.1| carboxyl-terminal protease [Paenibacillus curdlanolyticus YK9] gi|304345889|gb|EFM11723.1| carboxyl-terminal protease [Paenibacillus curdlanolyticus YK9] Length = 478 Score = 41.7 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 9/82 (10%) Query: 82 IAFYQDILSRGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES 140 + Y ++ + LP L G+ +V+ L++ L G FD ++ Sbjct: 371 LPAYTELAA------LPTDSVLKKGDYGDAVKTLQQMLQALGY-SIKGATEGVFDGVTDA 423 Query: 141 AVKLFQMRHGLDP-SGMVDSST 161 AV+ Q + P G V ST Sbjct: 424 AVRQLQQVESIQPADGQVREST 445 >gi|15894595|ref|NP_347944.1| peptodoglycan-binding domain-containing protein [Clostridium acetobutylicum ATCC 824] gi|15024244|gb|AAK79284.1|AE007643_7 Peptodoglycan-binding domain containing protein [Clostridium acetobutylicum ATCC 824] gi|325508730|gb|ADZ20366.1| Peptodoglycan-binding domain containing protein [Clostridium acetobutylicum EA 2018] Length = 148 Score = 41.7 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 32/127 (25%) Query: 56 LARVDMGIDSDIPIISKETIAQTEKA---IAFY---QDILSRGGWPELPIRPLHLGNSSV 109 + +V + +++ + A T Y Q ++ GG + G++ Sbjct: 36 IPKVSAPVATNLNATKSKMFASTRTYGTSFGRYMTAQQVIDNGG-------IIQEGDTGE 88 Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM-------RHG----LDPSGMVD 158 V ++ RL I D F + SAV FQ R+G L G+V Sbjct: 89 PVADIQRRLGIYDD--------GIFGSATYSAVVDFQRRIDREFHRNGYSDPLALDGIVG 140 Query: 159 SSTLEAM 165 + T + Sbjct: 141 AQTWYYL 147 >gi|126664625|ref|ZP_01735609.1| Membrane-bound lytic murein transglycosylase B [Marinobacter sp. ELB17] gi|126630951|gb|EBA01565.1| Membrane-bound lytic murein transglycosylase B [Marinobacter sp. ELB17] Length = 418 Score = 41.7 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 9/87 (10%) Query: 87 DILSRGGW---PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 I GG P + L S ++ +L+++L G + +A++ Sbjct: 337 RIAGAGGLQNPPPVDAPAL----SRDNIMQLQQQLEQRGY--SAGSPDGIMGPATRAAIR 390 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVD 170 +Q+ +GL G L + V Sbjct: 391 QYQIANGLVADGYPGPQVLHVLQVTPA 417 >gi|291568576|dbj|BAI90848.1| putative transporter [Arthrospira platensis NIES-39] Length = 401 Score = 41.7 bits (97), Expect = 0.20, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + L+ RL G + + + A+ FQ+ GL+ +G+V+ T E Sbjct: 70 GDYD--IIELQNRLQQKGYYLGA--IDGIYGEQTREAISNFQLDIGLESTGIVNQETWEY 125 Query: 165 MNVPVDLRIRQ 175 + + ++ Sbjct: 126 LLGNAAVIAQK 136 >gi|311693485|gb|ADP96358.1| peptidoglycan-binding domain 1 protein-like protein [marine bacterium HP15] Length = 139 Score = 41.7 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + L+ L +G +S D SA+ FQ +GL +G +D T EA+ + Sbjct: 30 DEIVALKNALYGAGY--DITNVSPQMDDSTRSALTRFQQDNGLQATGNLDDPTKEALGM 86 >gi|237737468|ref|ZP_04567949.1| predicted protein [Fusobacterium mortiferum ATCC 9817] gi|229421330|gb|EEO36377.1| predicted protein [Fusobacterium mortiferum ATCC 9817] Length = 124 Score = 41.7 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 16/27 (59%) Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAM 165 E+A+K FQ + L P G+ T++ + Sbjct: 91 ENAIKNFQKANNLTPDGIAGPKTIKLL 117 >gi|294676544|ref|YP_003577159.1| lysozyme [Rhodobacter capsulatus SB 1003] gi|294475364|gb|ADE84752.1| lysozyme [Rhodobacter capsulatus SB 1003] Length = 309 Score = 41.7 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 2/40 (5%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNV--PVDLRIRQLQVN 179 ++ FQ HGL G + +TL + + + + + Sbjct: 199 IRRFQADHGLTIDGKIGRATLSTLQRRLDAAEKAKPVALA 238 >gi|312116025|ref|YP_004013621.1| hypothetical protein Rvan_3337 [Rhodomicrobium vannielii ATCC 17100] gi|311221154|gb|ADP72522.1| protein of unknown function DUF847 [Rhodomicrobium vannielii ATCC 17100] Length = 345 Score = 41.7 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 93 GWPELPI---RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 G PE+ + LH G V L+ RL G P+ + F AV LFQ + Sbjct: 150 GQPEVQLPFDETLHAGMRGREVSSLQARLRALGY--PAGAVDGIFGEQTHRAVMLFQHDN 207 Query: 150 GLDPSGMVD 158 L G Sbjct: 208 AL--DGEAG 214 >gi|266621402|ref|ZP_06114337.1| spore cortex-lytic enzyme SleC [Clostridium hathewayi DSM 13479] gi|288866936|gb|EFC99234.1| spore cortex-lytic enzyme SleC [Clostridium hathewayi DSM 13479] Length = 424 Score = 41.7 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S VQ+++E+L + P + +AV+ FQ GL + Sbjct: 339 PGYDLTIGSSGQKVQQVQEQLDAIATVYSAIPHITPDGIYGPATAAAVREFQSIFGLPVT 398 Query: 155 GMVDSSTLE 163 G++D T Sbjct: 399 GVIDFRTWY 407 >gi|310818105|ref|YP_003950463.1| ErfK/YbiS/YcfS/YnhG family protein [Stigmatella aurantiaca DW4/3-1] gi|309391177|gb|ADO68636.1| ErfK/YbiS/YcfS/YnhG family protein [Stigmatella aurantiaca DW4/3-1] Length = 289 Score = 41.7 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 51/320 (15%), Positives = 97/320 (30%), Gaps = 91/320 (28%) Query: 56 LARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPEL-----PIRPLHLGNSSVS 110 ++ + + S+ P+ + G P L + G Sbjct: 5 VSSLRRPMSSNSPVPPPTAASALRNKRFS--------GQPSLVDVLSGKGTIGPGARGTG 56 Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-----GLDPSGMVDSSTLEAM 165 V+ L+E L+ G P G AF AV+ FQ+ + +G VD++TL+A+ Sbjct: 57 VRALQEALLAMGFSLPG-GADGAFGKQSAKAVRNFQVHAQSAFPNVKATGGVDAATLQAL 115 Query: 166 NV--PVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 + P + Q Q + +P +G V+V + Sbjct: 116 DALAPAPKQTGQ------------SQNLP-------VPRY------DGTPV---RVVVVK 147 Query: 224 VDRQTPIL--HSRINRIMFNPYWVI-----PRSIIQKDMMALLRQDPQYLKDNNIHMIDE 276 + +T + ++ I N + P K + L + Y + Sbjct: 148 NEHRTFLFDAQGQLQGIFGN---AVGANSSPTDKGLKQVSGKLGRAEAYALGQKL----- 199 Query: 277 KGKEVF-VEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNV 335 G V+ +D + + G+ +H T P Sbjct: 200 WGGPVYGPRLIDLSWADGS------RSGEE-----------------LHGTNAPDKLGED 236 Query: 336 VRFETSGCVRVRNIIDLDVW 355 V + GC+R N + ++ Sbjct: 237 V---SHGCIRHGNTDIIALY 253 >gi|321455269|gb|EFX66406.1| matrix metalloproteinase 1 [Daphnia pulex] Length = 538 Score = 41.7 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 19/28 (67%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 A+ FQ GL+P+G+++ TLE MN P Sbjct: 62 AIAEFQSLAGLEPTGILNEKTLEWMNKP 89 >gi|167517209|ref|XP_001742945.1| hypothetical protein [Monosiga brevicollis MX1] gi|163778044|gb|EDQ91659.1| predicted protein [Monosiga brevicollis MX1] Length = 1518 Score = 41.7 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPS-KGLSVAFDAYVESAVKLFQMR 148 ++ +P R L LG++ V L + LI + + + S FD ++AV Q Sbjct: 24 AQTSFPPPFDRVLALGDAGQDVFIL-QNLIRNNNQSIVLRNASAVFDNATQAAVVALQQA 82 Query: 149 HGLDPSGMVDSSTLE 163 GL +G+ D++TL Sbjct: 83 WGLSATGVADATTLA 97 >gi|311067778|ref|YP_003972701.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus atrophaeus 1942] gi|310868295|gb|ADP31770.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus atrophaeus 1942] Length = 297 Score = 41.7 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 4/61 (6%) Query: 107 SSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 S V +++ L + G+ + +AV FQ +GL G+ +T Sbjct: 230 SGEKVYQVQNALAALYFYPDKGAVNNGIDGIYGPKTANAVSRFQSVNGLTVDGIYGPATK 289 Query: 163 E 163 Sbjct: 290 A 290 >gi|229020392|ref|ZP_04177148.1| Carboxyl-terminal protease [Bacillus cereus AH1273] gi|228740927|gb|EEL91169.1| Carboxyl-terminal protease [Bacillus cereus AH1273] Length = 263 Score = 41.7 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 174 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEIEATGQLDK 231 Query: 160 STLEAMNVPVDLRIR------QLQVNL 180 T EA+ + +IR QLQ L Sbjct: 232 KTAEAIQNKIIEKIRSGENDLQLQTAL 258 >gi|229026622|ref|ZP_04182964.1| Carboxyl-terminal protease [Bacillus cereus AH1272] gi|228734655|gb|EEL85307.1| Carboxyl-terminal protease [Bacillus cereus AH1272] Length = 494 Score = 41.7 bits (97), Expect = 0.21, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEIEATGQLDK 462 Query: 160 STLEAMNVPVDLRIR------QLQVNL 180 T EA+ + +IR QLQ L Sbjct: 463 KTAEAIQNKIIEKIRSGENDLQLQTAL 489 >gi|319935309|ref|ZP_08009747.1| hypothetical protein HMPREF9488_00578 [Coprobacillus sp. 29_1] gi|319809717|gb|EFW06118.1| hypothetical protein HMPREF9488_00578 [Coprobacillus sp. 29_1] Length = 489 Score = 41.7 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 P ++Q ++E L G + + E A+K F+ R+GL +G+ D Sbjct: 401 GPYQYDQVDDNIQYMQEMLKELGY--KVDRVDGYYSKATEEALKAFEKRYGLAVNGIYDK 458 Query: 160 S 160 + Sbjct: 459 N 459 >gi|260881076|ref|ZP_05403544.2| ErfK/YbiS/YcfS/YnhG family protein [Mitsuokella multacida DSM 20544] gi|260849442|gb|EEX69449.1| ErfK/YbiS/YcfS/YnhG family protein [Mitsuokella multacida DSM 20544] Length = 412 Score = 41.7 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 65/230 (28%), Gaps = 79/230 (34%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 +++N+ A S+ A+ + + V G+V TP + ++ NP W Sbjct: 76 LVINLAARSIAAIRDNQKVALYPVGPGKVSTPTPTGYYKVIDKEVNPTWT---------- 125 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 DP D ++ P G N + I Sbjct: 126 ------DPG----------------------DASASIPS--------GPSNPLGYRWIGI 149 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTR 375 H T P ++ + ++GC+R+ I ++V+ Sbjct: 150 GGNYGI--HGTNRP---ESIGHYVSNGCIRMHE--------------EDVEKIYDMVEVG 190 Query: 376 KTTPVKLATEVPVHFVYISAWSPK--DSIIQF--RDDIYGLDNVHVGIIP 421 PV Y K D I + D YG NV + Sbjct: 191 T----------PVEITYNRIVVEKTPDDQIAYYIYPDGYGWQNVTTADVN 230 >gi|225387902|ref|ZP_03757666.1| hypothetical protein CLOSTASPAR_01672 [Clostridium asparagiforme DSM 15981] gi|225046029|gb|EEG56275.1| hypothetical protein CLOSTASPAR_01672 [Clostridium asparagiforme DSM 15981] Length = 416 Score = 41.7 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S VQ+++E+L I + P + AV+ FQ GL + Sbjct: 332 PGYDLTVGSSGPKVQQMQEQLDTIATVYSAIPRVNPDGIYGERTAEAVREFQSIFGLPQT 391 Query: 155 GMVDSSTLE 163 G+V+ +T Sbjct: 392 GVVNFATWY 400 >gi|283796334|ref|ZP_06345487.1| spore cortex-lytic enzyme SleC [Clostridium sp. M62/1] gi|291075734|gb|EFE13098.1| spore cortex-lytic enzyme SleC [Clostridium sp. M62/1] gi|295091586|emb|CBK77693.1| Putative peptidoglycan-binding domain-containing protein [Clostridium cf. saccharolyticum K10] gi|295116196|emb|CBL37043.1| Putative peptidoglycan-binding domain-containing protein [butyrate-producing bacterium SM4/1] Length = 423 Score = 41.7 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDL---DPSKGLSVAFDAYVESAVKLFQMRHGLD 152 P L +G+ V++++E+L + P + AV+ FQ GL Sbjct: 337 SFPGTDLTIGSRGSKVRQMQEQLDAIATIYTAIPRIQPDGIYGPATAEAVRTFQSIFGLP 396 Query: 153 PSGMVDSSTLE 163 +G+VD +T Sbjct: 397 QTGVVDFATWY 407 >gi|302534605|ref|ZP_07286947.1| predicted protein [Streptomyces sp. C] gi|302443500|gb|EFL15316.1| predicted protein [Streptomyces sp. C] Length = 283 Score = 41.7 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 6/75 (8%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-----GLDPSGMV 157 G + V L++ LI +G ++ + + AV F R+ GL + Sbjct: 210 KPGATHAQVAELQQLLIKAGYGPIKGAVTRFYGPETQRAVARFHDRNPAYRSGLH-DPRI 268 Query: 158 DSSTLEAMNVPVDLR 172 A+ R Sbjct: 269 GPKGFVALQKQAGRR 283 >gi|196230054|ref|ZP_03128917.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] gi|196225651|gb|EDY20158.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] Length = 363 Score = 41.7 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 52/155 (33%), Gaps = 43/155 (27%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 LE + + KV V VG +PI H W + +++ + M R DP Sbjct: 226 MLEVLVDDKVAAAFPVTVGSQQTASPIGH-----------WTV-KAVAK---MPTFRYDP 270 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYM 323 LK N + PG N + I ++ + Sbjct: 271 LMLKKG-------------------ERSSHANLL---PPGPNNPVGVLWIAL-NKKGIGI 307 Query: 324 HDTPEPILFNNVVRFETSGCVRVRNII--DLDVWL 356 H T +P +++ R + GC+R+ N L + Sbjct: 308 HGTNDP---DSIGRNASHGCIRLANWDVVKLAGMV 339 >gi|157693918|ref|YP_001488380.1| peptidase [Bacillus pumilus SAFR-032] gi|157682676|gb|ABV63820.1| S41A subfamily peptidase [Bacillus pumilus SAFR-032] Length = 482 Score = 41.7 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 23/111 (20%) Query: 82 IAFYQDILSRGGW-------PELPI--------------RPLHLGNSSVSVQRLRERLII 120 + Y+ + +G W P + I PL L ++ V++ + L Sbjct: 352 LTLYKWLTPKGNWIHKKGVVPTIAIHQPDYFTVGPLQLKEPLQLDMNNEEVRQAQTLLKG 411 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 DP + + FD + AV FQ + LD SG++D T + MN VD Sbjct: 412 LSF-DPGR-VDGYFDEETKKAVLAFQSTYNLDKSGVIDLKTAKMMNKMVDE 460 >gi|147773983|emb|CAN76268.1| hypothetical protein VITISV_004096 [Vitis vinifera] Length = 364 Score = 41.7 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 H G+ + + +L+E G + S FD E A+K +Q+ L+ +G +D +TL Sbjct: 53 HAGDKADGLAKLKEYFHYFGYIHNSNYTDD-FDDAFEQALKTYQLNFNLNTTGQLDXATL 111 Query: 163 EAMNVP 168 + P Sbjct: 112 NQIVSP 117 >gi|300785513|ref|YP_003765804.1| lysozyme [Amycolatopsis mediterranei U32] gi|299795027|gb|ADJ45402.1| lysozyme [Amycolatopsis mediterranei U32] Length = 428 Score = 41.7 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 3/80 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G + +V + L ++ G +F ++ V++FQ L G + Sbjct: 27 TLKQGATGAAVAEAQCELNLATKASRYTPIGADGSFGPATDARVRVFQKCAALSVDGQIG 86 Query: 159 SSTLEAMNVPVDLRIRQLQV 178 +T A+N R R+ Sbjct: 87 PNTWAALN-SWSARPRKCAT 105 Score = 38.7 bits (89), Expect = 2.0, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 4/66 (6%) Query: 101 PLHLGNSSVSVQRLRERL---IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G+S V+ L+ RL + G P D V FQ G+ Sbjct: 125 TLQSGSSGTDVKELQCRLNLAMEPGHYPPLTIDGQFGDGTRTR-VIQFQHCANASADGVA 183 Query: 158 DSSTLE 163 +T Sbjct: 184 GPTTWA 189 >gi|255654572|ref|ZP_05399981.1| putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase) [Clostridium difficile QCD-23m63] gi|296449345|ref|ZP_06891127.1| spore cortex-lytic enzyme SleC [Clostridium difficile NAP08] gi|296880721|ref|ZP_06904673.1| spore cortex-lytic enzyme SleC [Clostridium difficile NAP07] gi|296261815|gb|EFH08628.1| spore cortex-lytic enzyme SleC [Clostridium difficile NAP08] gi|296428294|gb|EFH14189.1| spore cortex-lytic enzyme SleC [Clostridium difficile NAP07] Length = 423 Score = 41.7 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 3/87 (3%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLD 152 P L +G+S V+ ++ +L + P+ + E+AV++FQ GL Sbjct: 334 SFPGTTLQVGSSGQYVRTIQNQLNAISNSYPAVPKVIEDGIYGTDTENAVRIFQGIFGLP 393 Query: 153 PSGMVDSSTLEAMNVPVDLRIRQLQVN 179 SG+VD T ++ R +N Sbjct: 394 QSGVVDFKTWYEISRVYVATTRIASLN 420 >gi|153853426|ref|ZP_01994835.1| hypothetical protein DORLON_00824 [Dorea longicatena DSM 13814] gi|149754212|gb|EDM64143.1| hypothetical protein DORLON_00824 [Dorea longicatena DSM 13814] Length = 102 Score = 41.7 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V +++E+L +I+G P + +V+ FQ GL + Sbjct: 17 PGYTLEIGSSGNKVLQMQEQLNVIAGAYPAIPKITADGIYGPATAESVRTFQKVFGLPQT 76 Query: 155 GMVDSSTLE 163 G VD +T Sbjct: 77 GTVDYTTWY 85 >gi|218528934|ref|YP_002419750.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylobacterium chloromethanicum CM4] gi|218521237|gb|ACK81822.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylobacterium chloromethanicum CM4] Length = 250 Score = 41.7 bits (97), Expect = 0.22, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 14/82 (17%) Query: 92 GGWPELPIRPLH------LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 G W +P P+ +G++ V+ L+ L + G P G FDA + + V F Sbjct: 166 GHW--VPTAPVRDGRFFAMGDTGQPVEALQAMLALYGYEQPVTG---HFDAAMRAVVTAF 220 Query: 146 QMRHGLDP--SGMVDSSTLEAM 165 Q RH G+ DSST+ + Sbjct: 221 Q-RHFRPARIDGVADSSTITTL 241 >gi|222149174|ref|YP_002550131.1| hypothetical protein Avi_2943 [Agrobacterium vitis S4] gi|221736159|gb|ACM37122.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 423 Score = 41.7 bits (97), Expect = 0.23, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 53/168 (31%), Gaps = 48/168 (28%) Query: 205 LEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQ 264 L E+G++ +G D +P ++ R+ F DP Sbjct: 301 LAYGEDGQLITAYPASIGSNDTPSPSGTVQVQRVAF---------------------DPG 339 Query: 265 YLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR-NNTYM 323 Y N + ++G V + PG + + I Sbjct: 340 Y--TYNPKVNFQQGANDKVLNI--------------PPGPNGPVGTVWIALSKPTYGI-- 381 Query: 324 HDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTPTWSRYHIE 369 H TPEP + R ++ GC+R+ N +L + P + I+ Sbjct: 382 HGTPEPS---KIGRTQSHGCIRLTNWDATELAKMV---QPGVTVEFID 423 >gi|150018201|ref|YP_001310455.1| peptidoglycan binding domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149904666|gb|ABR35499.1| Peptidoglycan-binding domain 1 protein [Clostridium beijerinckii NCIMB 8052] Length = 309 Score = 41.7 bits (97), Expect = 0.23, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%) Query: 109 VSVQRLRERLIISGDLDPSKGLS--VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +Q ++++L G + G++ ++ V FQ +GL GMV SSTL A+ Sbjct: 66 TDIQLIQQQLNSKGYVLTVDGIAGINTYNT-----VVKFQRENGLVADGMVGSSTLAAL 119 >gi|258624358|ref|ZP_05719307.1| VgrG protein [Vibrio mimicus VM603] gi|258583509|gb|EEW08309.1| VgrG protein [Vibrio mimicus VM603] Length = 1040 Score = 41.7 bits (97), Expect = 0.23, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 13/79 (16%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH--------- 149 GN+S V+ L++ LI G G F ++A++ FQ + Sbjct: 722 ASAYRQGNNSEEVRLLQQALIKLGFDLGKAGADGDFGGKTKTAIEQFQKSYQPSHQTHPS 781 Query: 150 ---GLDPSGMVDSSTLEAM 165 G G+V + TL A+ Sbjct: 782 YSIG-PVDGIVGNGTLLAL 799 >gi|326332362|ref|ZP_08198641.1| LigA [Nocardioidaceae bacterium Broad-1] gi|325949851|gb|EGD41912.1| LigA [Nocardioidaceae bacterium Broad-1] Length = 388 Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 5/86 (5%) Query: 96 ELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +P R L G V++L + L G + + AV +Q G++ + Sbjct: 136 TVPAWRDLAPGVEGKDVKQLEKNLWALGY--RGFDVDEDYTYATADAVAEWQEDLGVEET 193 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNL 180 G + T + + P +RI L +L Sbjct: 194 GKI--RTGDVVVQPAAVRIGSLSASL 217 >gi|303239377|ref|ZP_07325905.1| ErfK/YbiS/YcfS/YnhG family protein [Acetivibrio cellulolyticus CD2] gi|302593163|gb|EFL62883.1| ErfK/YbiS/YcfS/YnhG family protein [Acetivibrio cellulolyticus CD2] Length = 235 Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 4/80 (5%) Query: 88 ILSRGGWPELPI--RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 I+ G + R L G+ V ++++L G + + ++ ++ A+ F Sbjct: 152 IIKNGSFGPFGTGFRELLPGDRGADVLAVQQKLKTLGYFHSKE--TGIYEDDLKYALHKF 209 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q L+ + + AM Sbjct: 210 QKDKKLEVKNAITRADYHAM 229 >gi|302551078|ref|ZP_07303420.1| peptidoglycan-binding membrane protein [Streptomyces viridochromogenes DSM 40736] gi|302468696|gb|EFL31789.1| peptidoglycan-binding membrane protein [Streptomyces viridochromogenes DSM 40736] Length = 319 Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 4/67 (5%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS--GMVD 158 L LG+ V L+ RL + +D +E AV+ +Q G+ G+ Sbjct: 248 TLRLGDRGPEVTELQLRLRQLSLYVEDDDGT--YDEGLEDAVRTYQWSRGIQDDDLGVYG 305 Query: 159 SSTLEAM 165 T + Sbjct: 306 RGTRTRL 312 >gi|301629918|ref|XP_002944079.1| PREDICTED: matrix metalloproteinase-21-like, partial [Xenopus (Silurana) tropicalis] Length = 568 Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%) Query: 123 DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDLRI 173 D L + + A++ FQ + L+ +G +D++T+ AMNVP D R+ Sbjct: 47 DSVSPTDLELTLNPRFNGALRRFQEANKLEVTGRLDAATIMAMNVPRCGVPDHRV 101 >gi|301606175|ref|XP_002932698.1| PREDICTED: matrix metalloproteinase-21-like [Xenopus (Silurana) tropicalis] Length = 604 Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 19/33 (57%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 A+K FQ + L +G++D +T+ AMN P Sbjct: 101 PQFIDALKKFQKLNNLPATGILDDATINAMNKP 133 >gi|16901508|gb|AAL27029.1| matrix metalloproteinase MMP2 [Glycine max] Length = 357 Score = 41.7 bits (97), Expect = 0.24, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFD-AYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S+ V +++ L G ++ S LS + D + SA+K +Q + L P+G +++ TL+ M Sbjct: 74 SAPPVSLIKDYLSNYGYIESSGPLSNSMDQETIISAIKTYQQYYCLQPTGKLNNETLQQM 133 >gi|301627877|ref|XP_002943093.1| PREDICTED: matrix metalloproteinase-17, partial [Xenopus (Silurana) tropicalis] Length = 518 Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P S + AVK Q GL +G +D +T+ MN P Sbjct: 3 LTRYGYLPPPDPFSARQQTLEGLREAVKAMQRVAGLPETGELDDATVRMMNKP 55 >gi|332970006|gb|EGK09005.1| ErfK/YbiS/YcfS/YnhG family protein [Psychrobacter sp. 1501(2011)] Length = 455 Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 46/162 (28%), Gaps = 51/162 (31%) Query: 194 RYVLVNIPAASLEAVEN-GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQ 252 V+ + + +L A + K+ VG +P ++ + +P Sbjct: 329 TRVVADKNSQTLYAYDKQDKLVASYPTTVGSTATPSPTGTHKVQTKVSDP---------- 378 Query: 253 KDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTK 312 N D GK+ + PG N + Sbjct: 379 -----------------NYTHTDGDGKQTII-----------------PPGPNNPVGRVW 404 Query: 313 IEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 I H +P+P + R ++GC+R+ N L Sbjct: 405 IGLSKPSYGI--HGSPDP---ERISRQASAGCIRLTNWDALA 441 >gi|317489962|ref|ZP_07948454.1| ykud domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316910960|gb|EFV32577.1| ykud domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 552 Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 54/159 (33%), Gaps = 31/159 (19%) Query: 101 PLHLGNSSVSVQRLRE-------RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD- 152 L LG++ V ++ RL + +GL A+ + SA +Q R Sbjct: 304 SLKLGDT--PVAQVNADAIAGWVRLHDDVTVGVDEGLVAAWVQDLASACNTYQARRTFTR 361 Query: 153 PSG------------MVDSSTLEA--MNVPVDLRIRQLQVNLMRIKK----LLEQKMGLR 194 G ++D L+ MN + + + + L + G R Sbjct: 362 ADGKEVTVSGGVYGWIIDKDKLQEALMNGVDSAQTGDMAIPCEQEAGAYDGLHGRDWGKR 421 Query: 195 YVLVNIPAASLEAVEN-GKVGLRSTVIVGRVD--RQTPI 230 YV V++ ++ G + S V+ G D TP Sbjct: 422 YVDVDLTEQHARFYDDEGSLAWESDVVTGTPDGEHDTPE 460 >gi|225575004|ref|ZP_03783614.1| hypothetical protein RUMHYD_03083 [Blautia hydrogenotrophica DSM 10507] gi|225037779|gb|EEG48025.1| hypothetical protein RUMHYD_03083 [Blautia hydrogenotrophica DSM 10507] Length = 416 Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA---FDAYVESAVKLFQMRHG 150 WP L +G + V++++E+L P+ +D ++AV+ FQ G Sbjct: 331 WPRYD---LDIGANGAKVRQIQEQLNAIAKSYPALPTVTVNGDYDEQTKNAVRQFQGVFG 387 Query: 151 LDPSGMVDSSTLE 163 L +G+VD ST Sbjct: 388 LPETGIVDYSTWY 400 >gi|194015385|ref|ZP_03054001.1| S41A subfamily peptidase [Bacillus pumilus ATCC 7061] gi|194012789|gb|EDW22355.1| S41A subfamily peptidase [Bacillus pumilus ATCC 7061] Length = 482 Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 23/111 (20%) Query: 82 IAFYQDILSRGGW-------PELPI--------------RPLHLGNSSVSVQRLRERLII 120 + Y+ + +G W P + I PL L ++ V++ + L Sbjct: 352 LTLYKWLTPKGNWIHKKGVVPTIAIHQPDYFTVGPLQLKEPLQLDMNNEEVRQAQTLLKG 411 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 DP + + FD + AV FQ + LD SG++D +T + MN VD Sbjct: 412 LSF-DPGR-VDGYFDEETKKAVLAFQSTYNLDKSGVIDLNTAKMMNKMVDE 460 >gi|192292423|ref|YP_001993028.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rhodopseudomonas palustris TIE-1] gi|192286172|gb|ACF02553.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rhodopseudomonas palustris TIE-1] Length = 288 Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 86 QDILSRG--GWPE----LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 + + + G W E +P L G V+ +++ L G P G ++D Sbjct: 187 RSLAASGVGLWVEPARIVPGPALKQGTEGDEVRLMQQALADYGYRVPVNG---SYDHATT 243 Query: 140 SAVKLFQMRHGL-DPSGMVDSSTLEAM-----NVPVDLRI 173 V FQ G+ D+STL + +PV+ R Sbjct: 244 DVVTAFQRHFRPEKVDGIADASTLATLHALLARLPVEARA 283 >gi|226311843|ref|YP_002771737.1| spore cortex-lytic enzyme precursor [Brevibacillus brevis NBRC 100599] gi|226094791|dbj|BAH43233.1| probable spore cortex-lytic enzyme precursor [Brevibacillus brevis NBRC 100599] Length = 261 Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 +G V+ ++ RL G + F A++ FQ GL G++ + T Sbjct: 38 KVGEEGSDVREMQYRLKHLGFYTG--KVDGVFGWRSYWALRNFQYEFGLPIDGVLGAQT 94 >gi|158426173|ref|YP_001527465.1| N-acetylmuramoyl-L-alanine amidase [Azorhizobium caulinodans ORS 571] gi|158333062|dbj|BAF90547.1| N-acetylmuramoyl-L-alanine amidase [Azorhizobium caulinodans ORS 571] Length = 274 Score = 41.7 bits (97), Expect = 0.25, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 4/72 (5%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR-HGLDP 153 P+ R L +G+S + L+ L + G ++ +D V FQ Sbjct: 177 PKGGGRFLMMGDSGQPIAALQAMLALYGY---GIEVTGLYDEATRDVVMAFQRHFRRSQV 233 Query: 154 SGMVDSSTLEAM 165 G+ D ST+ + Sbjct: 234 DGVADGSTILTL 245 >gi|331269415|ref|YP_004395907.1| N-acetylmuramoyl-L-alanine amidase-like protein [Clostridium botulinum BKT015925] gi|329125965|gb|AEB75910.1| N-acetylmuramoyl-L-alanine amidase-like protein [Clostridium botulinum BKT015925] Length = 272 Score = 41.4 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + +++ LI + G F +++K FQ L G+V +T Sbjct: 210 KQGARGNITKIIQKILINKNYKIQADG---IFGEATVNSIKHFQGNKNLVQDGVVGKNTW 266 Query: 163 EAM 165 +A+ Sbjct: 267 KAL 269 >gi|319407603|emb|CBI81253.1| putative membrane-bound lytic murein transglycosylase [Bartonella sp. 1-1C] Length = 418 Score = 41.4 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ RL GD D + + A+K FQ+RHGL+ +G + TL + Sbjct: 365 ELQSRLAKLGDYDGEIDGKIG--TATKKAIKAFQLRHGLEENGYPNYETLSHI 415 >gi|163850374|ref|YP_001638417.1| N-acetylmuramoyl-L-alanine amidase [Methylobacterium extorquens PA1] gi|163661979|gb|ABY29346.1| N-acetylmuramoyl-L-alanine amidase family 2 [Methylobacterium extorquens PA1] Length = 250 Score = 41.4 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 10/80 (12%) Query: 92 GGW-PELPIRPLH---LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W P P+R +G++ V+ L+ L + G P G FDA + + V FQ Sbjct: 166 GHWVPPAPVRDGRFFAMGDTGQPVEALQAMLALYGYEQPVTG---HFDAAMRAVVTAFQ- 221 Query: 148 RHGLDP--SGMVDSSTLEAM 165 RH G+ DSST+ + Sbjct: 222 RHFRPARIDGVADSSTITTL 241 >gi|89056490|ref|YP_511941.1| peptidoglycan binding domain-containing protein [Jannaschia sp. CCS1] gi|88866039|gb|ABD56916.1| Peptidoglycan-binding domain 1 [Jannaschia sp. CCS1] Length = 568 Score = 41.4 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 14/89 (15%) Query: 77 QTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA 136 T + IA + ++ P + R L + +RL + G LDP + + FD Sbjct: 478 FTPQQIAQLEAREAQLNLPPV-TRSL-----------VEQRLTVLG-LDPGR-VDGRFDD 523 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 AV+ +Q G+D +G +D T+ + Sbjct: 524 STRRAVRRYQQARGMDVTGYLDQQTVVRL 552 >gi|114320621|ref|YP_742304.1| lytic murein transglycosylase [Alkalilimnicola ehrlichii MLHE-1] gi|114227015|gb|ABI56814.1| lytic murein transglycosylase [Alkalilimnicola ehrlichii MLHE-1] Length = 400 Score = 41.4 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 3/78 (3%) Query: 87 DILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 I G P P +V+RL+E L G + + AV+ FQ Sbjct: 319 RIAGTGDLKTRPAEPPEA-MRIEAVKRLQETLNALGY--EAGPVDGQPGRQTRKAVRAFQ 375 Query: 147 MRHGLDPSGMVDSSTLEA 164 GL G L+A Sbjct: 376 QDAGLPADGHPSPRVLQA 393 >gi|288916296|ref|ZP_06410675.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EUN1f] gi|288352275|gb|EFC86473.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EUN1f] Length = 263 Score = 41.4 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 15/32 (46%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F A AVK FQ+ GL P G+ T + Sbjct: 231 FGAKTTEAVKTFQVSRGLKPDGVFGPVTHSYL 262 >gi|190575450|ref|YP_001973295.1| putative peptidoglycan-binding ErfK/YbiS/YcfS/YnhG protein [Stenotrophomonas maltophilia K279a] gi|190013372|emb|CAQ47006.1| putative peptidoglycan binding ErfK/YbiS/YcfS/YnhG protein [Stenotrophomonas maltophilia K279a] Length = 320 Score = 41.4 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 PG N + I+ + Y +H TPEP +V + E+ GCVR+ N L Sbjct: 257 PPGPNNPVGRVWIDLSKPH--YGLHGTPEPG---HVGKTESHGCVRMTNWDAL 304 Score = 37.1 bits (85), Expect = 6.2, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVES----AVKLFQMRHGLDPSGMVDSSTLEAM 165 R L LD + D V S AV FQ HGL +G +D +T +A+ Sbjct: 44 RSALHAQVLLDRANFSPGQIDGEVGSNQRRAVSGFQAAHGLTVTGELDDATWQAL 98 >gi|15614194|ref|NP_242497.1| spore cortex-lytic enzyme [Bacillus halodurans C-125] gi|25453281|sp|Q9KCE0|SLEB_BACHD RecName: Full=Spore cortex-lytic enzyme; Short=SCLE; Flags: Precursor gi|10174248|dbj|BAB05350.1| spore cortex-lytic enzyme [Bacillus halodurans C-125] Length = 330 Score = 41.4 bits (96), Expect = 0.26, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + V L+ RL G + K + F AV+ +Q G++ G+V Sbjct: 38 GATGDDVVELQARLQYIGFYN--KKIDGVFGWSTYWAVRNYQYEFGMEVDGLVGPEMKAK 95 Query: 165 M 165 + Sbjct: 96 L 96 >gi|302336335|ref|YP_003801542.1| Peptidoglycan-binding domain 1 protein [Olsenella uli DSM 7084] gi|301320175|gb|ADK68662.1| Peptidoglycan-binding domain 1 protein [Olsenella uli DSM 7084] Length = 303 Score = 41.4 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 12/87 (13%) Query: 89 LSRGGWPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + W L +G+ V +++ERL I G F Y Sbjct: 60 VDAPTWSALVDAGYTMGDRTLYLRLPNFHGNDVLQMQERLNILGF--SCGKPDGCFGVYT 117 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAM 165 E+AVK FQ G+ GM T +++ Sbjct: 118 EAAVKEFQESQGMLADGMAFQDTFDSI 144 Score = 40.2 bits (93), Expect = 0.63, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 P+ G S +V+ ++ERL G +D ++ + +AV F++ G+ VD+ Sbjct: 3 PIREGASGAAVEDIQERLGRLGYEIDEAELAEKSMGPSSVAAVAKFRLDQGMGLGTEVDA 62 Query: 160 STLEAM 165 T A+ Sbjct: 63 PTWSAL 68 >gi|146343733|ref|YP_001208781.1| hypothetical protein BRADO6980 [Bradyrhizobium sp. ORS278] gi|146196539|emb|CAL80566.1| conserved hypothetical protein; putative signal peptide; Putative peptidoglycan-binding domain-containing protein [Bradyrhizobium sp. ORS278] Length = 324 Score = 41.4 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 48/150 (32%), Gaps = 45/150 (30%) Query: 204 SLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 S++A + +G VG D+ TP+ +++ I NP R + Sbjct: 200 SVQAFDKDGNRVAMLPATVGSDDKPTPVGSFKVDSIDANP---------------NYRYN 244 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFY--SRNN 320 P Y + + F PG N + S I + Sbjct: 245 PDY---------------------KFKGVKARK-PFDIKPGPNNPVGSYWIGLSIGNGYG 282 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRNII 350 H T EP V + E+ GCVR+ N Sbjct: 283 I--HGTAEP---AKVGKTESHGCVRLTNWD 307 >gi|254503418|ref|ZP_05115569.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] gi|222439489|gb|EEE46168.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] Length = 257 Score = 41.4 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRI 173 L+ RL + G +A+K FQ+ + P+G+ D++T++A+ + D R Sbjct: 29 LQMRLNVHG---AQITEDGVIGNETTAALKAFQIARHIKPTGIADAATVKALRISSDQRR 85 Query: 174 R 174 R Sbjct: 86 R 86 >gi|301620574|ref|XP_002939653.1| PREDICTED: matrix metalloproteinase-21-like [Xenopus (Silurana) tropicalis] Length = 902 Score = 41.4 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 22/121 (18%) Query: 74 TIAQTEKAIAFYQDIL----SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKG 129 T ++ + Y + + + P+ L + S LI G+ + Sbjct: 426 TPEAAQQYLVKYGWVAPVNWEEQAFTDFPVHDLAPQDVSQ--------LISEGESEEHPR 477 Query: 130 LSVAFDAYVE------SAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDLRIRQLQVN 179 +S + + E ++K FQ +GL +G++DS+T AMN P D ++ + N Sbjct: 478 VSNSSENETEINPSFIDSLKKFQDANGLTATGVLDSATKIAMNKPRCGVPDFKVASRRKN 537 Query: 180 L 180 Sbjct: 538 A 538 >gi|239627635|ref|ZP_04670666.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517781|gb|EEQ57647.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 420 Score = 41.4 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L LG++ V++++E+L I + P + AV+ FQ GL + Sbjct: 336 PGNDLTLGSTGDKVRQMQEQLDMIATVYTAIPRVTPDGIYGPRTADAVREFQSIFGLPQT 395 Query: 155 GMVDSSTLE 163 G+VD +T Sbjct: 396 GVVDFATWY 404 >gi|157691940|ref|YP_001486402.1| N-acetylmuramoyl-L-alanine amidase [Bacillus pumilus SAFR-032] gi|157680698|gb|ABV61842.1| N-acetylmuramoyl-L-alanine amidase [Bacillus pumilus SAFR-032] Length = 299 Score = 41.4 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 5/95 (5%) Query: 70 ISKETIAQTEKAIAFYQDILSR-GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLD--- 125 IS Q + + Y++ P+ I+ V+ +++ L Sbjct: 193 ISDPNKIQIGQVLKIYRNDAKSLYNLPDGVIKVTSPLTKGEHVRLVQQALAAVYFYPDKA 252 Query: 126 -PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +KG+ + +AV FQ+ +GL G+ Sbjct: 253 AANKGIDGVYGEKTANAVARFQLVNGLPSDGVYGP 287 >gi|254470560|ref|ZP_05083964.1| N-acetylmuramoyl-L-alanine amidase [Pseudovibrio sp. JE062] gi|211960871|gb|EEA96067.1| N-acetylmuramoyl-L-alanine amidase [Pseudovibrio sp. JE062] Length = 252 Score = 41.4 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 4/65 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSS 160 G+ ++ L+ L + G +S FD AV+ FQ G+ D+ Sbjct: 181 FQEGDEGQPIEALQSLLGLYGY---DVMVSGVFDEKTRFAVEAFQRHFRPAKVDGIADAQ 237 Query: 161 TLEAM 165 T+ + Sbjct: 238 TIATL 242 >gi|298249255|ref|ZP_06973059.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] gi|297547259|gb|EFH81126.1| Peptidoglycan-binding domain 1 protein [Ktedonobacter racemifer DSM 44963] Length = 202 Score = 41.4 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 18/37 (48%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F + AV FQ +GLDP G+V T A+ Sbjct: 163 AVDGQFGVLTQQAVFDFQDYYGLDPDGIVGPRTWHAL 199 >gi|149912610|ref|ZP_01901144.1| hypothetical protein RAZWK3B_01440 [Roseobacter sp. AzwK-3b] gi|149813016|gb|EDM72842.1| hypothetical protein RAZWK3B_01440 [Roseobacter sp. AzwK-3b] Length = 204 Score = 41.4 bits (96), Expect = 0.28, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 14/115 (12%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQR 113 N A+V+ S + ++ ++ E+A+ + + + +RP +Q Sbjct: 99 NRDAQVEAVTASALATLAPLAVSAPEEAVELRRAEAA------VRMRP-------SVLQG 145 Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++ERL I+ +L P + + A+ FQ GL+P+G+ D+ T+ + V Sbjct: 146 VQERL-ITRELLPEESADGVYGEQTAKALARFQEDTGLEPTGLPDAWTVFVLQVS 199 >gi|242073696|ref|XP_002446784.1| hypothetical protein SORBIDRAFT_06g022520 [Sorghum bicolor] gi|241937967|gb|EES11112.1| hypothetical protein SORBIDRAFT_06g022520 [Sorghum bicolor] Length = 367 Score = 41.4 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L G V+ ++E L+ G + + +F + E AVK +Q G +G++ Sbjct: 162 RTLRAGAEGEDVRAMQEALLKLGFYSGEEDMEYSSFSSGTERAVKTWQSTVGTSENGVMT 221 Query: 159 SSTLEAM 165 S LE + Sbjct: 222 SELLEWL 228 >gi|58425396|gb|AAW74433.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 365 Score = 41.4 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 PG N + I+ + Y +H TPEP +V + E+ GCVR+ N Sbjct: 302 PPGPNNPVGRVWIDLSKPH--YGLHGTPEPG---HVGKTESHGCVRLTNWD 347 >gi|323141957|ref|ZP_08076813.1| NlpC/P60 family protein [Phascolarctobacterium sp. YIT 12067] gi|322413571|gb|EFY04434.1| NlpC/P60 family protein [Phascolarctobacterium sp. YIT 12067] Length = 306 Score = 41.4 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++L + G D S SA+K FQ +H L G ++ +T + + Sbjct: 118 QKLQVLGFSDERP--SGRMTEATSSALKSFQKQHKLKADGELNDATYQKL 165 >gi|325956760|ref|YP_004292172.1| hypothetical protein LAC30SC_05425 [Lactobacillus acidophilus 30SC] gi|325333325|gb|ADZ07233.1| hypothetical protein LAC30SC_05425 [Lactobacillus acidophilus 30SC] Length = 366 Score = 41.4 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 19/40 (47%) Query: 132 VAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 ++ +AVK FQ RH L +G +D T + ++ Sbjct: 169 NLYNPATYNAVKNFQRRHNLPATGDIDLKTWQKLDFSKAS 208 >gi|291446759|ref|ZP_06586149.1| peptidoglycan-binding domain 1 protein [Streptomyces roseosporus NRRL 15998] gi|291349706|gb|EFE76610.1| peptidoglycan-binding domain 1 protein [Streptomyces roseosporus NRRL 15998] Length = 417 Score = 41.4 bits (96), Expect = 0.29, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 6/135 (4%) Query: 29 KPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQ-- 86 P A+V+ + + V+ R D R ++ + A Y+ Sbjct: 101 PPATATVVRTDLVLART--VDGRIDFAQRRAVKAAVEGTVTVAAAEGRTVRRGEALYELN 158 Query: 87 DILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 D + +P R + G+ V +L L G + + E+AVK + Sbjct: 159 DKPVTLLYGPVPAFREMKTGHRGSDVLQLERNLRDLGY-GAGLHVDTEYGEDTEAAVKRW 217 Query: 146 QMRHGLDPSGMVDSS 160 Q + +G V Sbjct: 218 QKHLNRETTGRVGRG 232 >gi|317494173|ref|ZP_07952589.1| ykud domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917946|gb|EFV39289.1| ykud domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 306 Score = 41.4 bits (96), Expect = 0.30, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 62/197 (31%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N L G K + + +G + R TP+ WV S+ +K Sbjct: 101 IIINSAEMRLYYYPKGSKTVVVLPIGIGELGRDTPM------------NWV--TSVQRK- 145 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 + P + +H E+ + G N M + Sbjct: 146 -----KAGPTWTPTKKMHEEYAANGEILPQVF--------------PAGPDNPMGLYALY 186 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHI-----E 369 H T F +R + GCVR+R+ D +L + P +R + Sbjct: 187 IGRLYAV--HGTNAN--FGIGLR-VSHGCVRLRD--DDIKYLFDNVPVGTRLQFINEPVK 239 Query: 370 EVVKTRKTTPVKLATEV 386 V+ + +++ + Sbjct: 240 ATVEPDGSRYIEVHNPL 256 >gi|254522184|ref|ZP_05134239.1| ErfK/YbiS/YcfS/YnhG family protein [Stenotrophomonas sp. SKA14] gi|219719775|gb|EED38300.1| ErfK/YbiS/YcfS/YnhG family protein [Stenotrophomonas sp. SKA14] Length = 319 Score = 41.4 bits (96), Expect = 0.30, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 6/53 (11%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDL 352 PG N + I+ + Y +H TPEP +V + E+ GCVR+ N L Sbjct: 256 PPGPNNPVGRVWIDLSKPH--YGLHGTPEPG---HVGKTESHGCVRMTNWDAL 303 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 5/62 (8%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVES----AVKLFQMRHGLDPSGMVDSSTLE 163 + R L LD + D V S AV FQ HGL +G +D +T + Sbjct: 37 GPDIAA-RSPLHAQVLLDRANFSPGQIDGEVGSNQRRAVSGFQAAHGLTVTGELDEATWK 95 Query: 164 AM 165 A+ Sbjct: 96 AL 97 >gi|240137450|ref|YP_002961921.1| N-acetylmuramoyl-L-alanine amidase (AGR_C_3833p) [Methylobacterium extorquens AM1] gi|240007418|gb|ACS38644.1| N-acetylmuramoyl-L-alanine amidase (AGR_C_3833p) [Methylobacterium extorquens AM1] Length = 250 Score = 41.4 bits (96), Expect = 0.30, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 10/80 (12%) Query: 92 GGW-PELPIRPLH---LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W P P+R +G++ V+ L+ L + G P G FDA + + V FQ Sbjct: 166 GHWVPPAPVRDGRFFAMGDTGQPVEALQAMLALYGYEQPVTG---HFDAAMRAVVTAFQ- 221 Query: 148 RHGLDP--SGMVDSSTLEAM 165 RH G+ DSST+ + Sbjct: 222 RHFRPARIDGVADSSTITTL 241 >gi|282865059|ref|ZP_06274112.1| Peptidoglycan-binding domain 1 protein [Streptomyces sp. ACTE] gi|282559982|gb|EFB65531.1| Peptidoglycan-binding domain 1 protein [Streptomyces sp. ACTE] Length = 426 Score = 41.4 bits (96), Expect = 0.30, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 27/89 (30%), Gaps = 9/89 (10%) Query: 86 QDILSRGG----WPELPIR-PLHLGNSSVSVQRLRERLIISGD----LDPSKGLSVAFDA 136 + I + GG P P R G S+ VQRL +L+ G D Sbjct: 336 RTIPAAGGGADEAPAFPGRGSFRPGQSNSDVQRLGTQLVKKGYGRYYAKGPDRRWTEADR 395 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 A + Q G G T + Sbjct: 396 RNVEAFQKAQGWRGSAADGYPGPETWRRL 424 >gi|224053424|ref|XP_002297812.1| predicted protein [Populus trichocarpa] gi|222845070|gb|EEE82617.1| predicted protein [Populus trichocarpa] Length = 395 Score = 41.4 bits (96), Expect = 0.30, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L G+ V+ +++ L G + + +F + E AV+ +Q G G++ Sbjct: 177 KTLRKGSEGEQVKEMQDALQKLGFYSGEEDMEYSSFSSGTERAVRTWQASLGASEDGIMT 236 Query: 159 SSTLEAM 165 + L+ + Sbjct: 237 TELLKRL 243 >gi|15616161|ref|NP_244466.1| carboxy-terminal processing protease [Bacillus halodurans C-125] gi|10176223|dbj|BAB07318.1| carboxy-terminal processing protease [Bacillus halodurans C-125] Length = 479 Score = 41.4 bits (96), Expect = 0.30, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 8/86 (9%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL L + ++ + L G F+ E AV+ FQ L+ +G++D Sbjct: 388 PLELDMLNDQIEHAQMMLKGLGFEPG--RTDGYFEEQTEKAVRAFQDSQELETTGVLDEE 445 Query: 161 TLEAMNVPVDLRIR------QLQVNL 180 T A+ + +R QL+V L Sbjct: 446 TAIALQQSIVDLVRDQENDQQLRVAL 471 >gi|186684874|ref|YP_001868070.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186467326|gb|ACC83127.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 276 Score = 41.4 bits (96), Expect = 0.30, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 111 VQRLRERLIISGDLDPS--KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V+ L+ RL G P+ + +AVK FQ GL +G+ + + P Sbjct: 109 VKGLQNRLKFHGFATPAEIPQDKPFYGPATYTAVKKFQKSQGLTENGIATFEQRQILQQP 168 >gi|168187475|ref|ZP_02622110.1| lysin [Clostridium botulinum C str. Eklund] gi|169294640|gb|EDS76773.1| lysin [Clostridium botulinum C str. Eklund] Length = 257 Score = 41.4 bits (96), Expect = 0.31, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 6/65 (9%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 P+ G+ V+ +++ L G+ G + AV FQ +GL G+V ++ Sbjct: 196 PMQYGD---DVKLIQKYLNKYGNYCNIDG---WYGFNTRKAVMNFQNTNGLSVDGIVGNN 249 Query: 161 TLEAM 165 T + + Sbjct: 250 TWDVL 254 >gi|163760769|ref|ZP_02167849.1| LysM-repeat protein and domain [Hoeflea phototrophica DFL-43] gi|162282091|gb|EDQ32382.1| LysM-repeat protein and domain [Hoeflea phototrophica DFL-43] Length = 98 Score = 41.4 bits (96), Expect = 0.31, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 3/65 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA---FDAYVESAVKLFQMRHGLDPSGMV 157 L G++ V L+ L+ D F E+AVK +Q + L G+V Sbjct: 6 TLSKGSAGEDVSALQHGLLQVAGADTPTDPGPIDGKFGQKTEAAVKAYQTQLKLKADGIV 65 Query: 158 DSSTL 162 T Sbjct: 66 GDLTW 70 >gi|297517138|ref|ZP_06935524.1| LysM domain/ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli OP50] Length = 171 Score = 41.4 bits (96), Expect = 0.31, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDM 255 I Q+ + Sbjct: 148 TPTAGIRQRSL 158 >gi|255541150|ref|XP_002511639.1| Metalloendoproteinase 1 precursor, putative [Ricinus communis] gi|223548819|gb|EEF50308.1| Metalloendoproteinase 1 precursor, putative [Ricinus communis] Length = 363 Score = 41.4 bits (96), Expect = 0.31, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 G+ + +L+ G L ++ FD +ESAV +Q + GL +G +D + Sbjct: 59 RRGSHVSGMSQLKRYFHHFGYLPLRDFDNITDTFDVPLESAVFRYQAKLGLPITGELDFN 118 Query: 161 TLEAM 165 T+ + Sbjct: 119 TVSQL 123 >gi|168178137|ref|ZP_02612801.1| putative phage related N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum NCTC 2916] gi|182670829|gb|EDT82803.1| putative phage related N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum NCTC 2916] Length = 238 Score = 41.4 bits (96), Expect = 0.31, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + + +V+ ++ +L G G+ F +VK FQ L G+V Sbjct: 169 KYNPNSFDANVKVIQSKLQNIGYSVGKSGVDGYFGDGTLLSVKCFQRDCNLYVDGIVGKD 228 Query: 161 TLEAM 165 T + + Sbjct: 229 TWKVL 233 >gi|85717364|ref|ZP_01048316.1| Lytic murein transglycosylase [Nitrobacter sp. Nb-311A] gi|85695839|gb|EAQ33745.1| Lytic murein transglycosylase [Nitrobacter sp. Nb-311A] Length = 407 Score = 41.4 bits (96), Expect = 0.31, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 VQ ++ RL +G + G AVK FQ R GL P G L + Sbjct: 349 AEVQEVQTRLTKAGF--DTGGTDGRVGNDTMKAVKDFQTRAGLPPDGYAGLKVLSKL 403 >gi|297824541|ref|XP_002880153.1| matrix metalloproteinase [Arabidopsis lyrata subsp. lyrata] gi|297325992|gb|EFH56412.1| matrix metalloproteinase [Arabidopsis lyrata subsp. lyrata] Length = 336 Score = 41.4 bits (96), Expect = 0.32, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 3/58 (5%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 VS+ ++ L G L D E A+ +Q GL +G DS TL + Sbjct: 40 DVSIPEIKRHLQQYGYLPQKNEPD---DVSFEQALARYQKNLGLPITGKPDSDTLSQI 94 >gi|291451685|ref|ZP_06591075.1| lipoprotein [Streptomyces albus J1074] gi|291354634|gb|EFE81536.1| lipoprotein [Streptomyces albus J1074] Length = 280 Score = 41.4 bits (96), Expect = 0.32, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + G +S V+ L+ RL G S + + AV +Q + L +G Sbjct: 72 PAVLMRPGQTSEQVRELQARLASLGLFGRSP--TGFYGDVTSEAVSAYQRKGALPVTGTT 129 Query: 158 DSSTLEAM 165 D+ T + + Sbjct: 130 DAVTWDRL 137 >gi|225433438|ref|XP_002285669.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 372 Score = 41.4 bits (96), Expect = 0.32, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L +G+ V+ ++E L G + + +F + E AVK +Q G +G++ Sbjct: 154 KTLRVGSEGEEVRAMQEALQNLGFYSGEEDVEFSSFSSGTERAVKTWQASLGAPENGIMT 213 Query: 159 SSTLEAM 165 + LE + Sbjct: 214 AELLERL 220 >gi|196233249|ref|ZP_03132095.1| Peptidoglycan-binding domain 1 protein [Chthoniobacter flavus Ellin428] gi|196222720|gb|EDY17244.1| Peptidoglycan-binding domain 1 protein [Chthoniobacter flavus Ellin428] Length = 296 Score = 41.4 bits (96), Expect = 0.32, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 LR R I GD+D +E A+K +Q R GL SGM D TL ++ V Sbjct: 29 ELRRRNIYFGDIDGRAS------PELEQALKHYQKRKGLAVSGMNDHDTLRSLGV 77 >gi|297741928|emb|CBI33363.3| unnamed protein product [Vitis vinifera] Length = 238 Score = 41.4 bits (96), Expect = 0.32, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVD 158 + L +G+ V+ ++E L G + + +F + E AVK +Q G +G++ Sbjct: 20 KTLRVGSEGEEVRAMQEALQNLGFYSGEEDVEFSSFSSGTERAVKTWQASLGAPENGIMT 79 Query: 159 SSTLEAM 165 + LE + Sbjct: 80 AELLERL 86 >gi|91201948|emb|CAJ75008.1| hypothetical protein kuste4246 [Candidatus Kuenenia stuttgartiensis] Length = 314 Score = 41.4 bits (96), Expect = 0.32, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 11/84 (13%) Query: 165 MNVPVDLRIRQLQVNL-MRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 +N D R +N+ ++K L G +L++ +L + N + + + G+ Sbjct: 167 INKKPDSR-----LNIGEKLKIL----KGKTKILISKSEFTLTVLLNDRYVKQYRIGTGK 217 Query: 224 VDRQTPILHSRINRIMFNPYWVIP 247 D +TP + M NP W P Sbjct: 218 ND-KTPEGTFEVKNKMKNPTWYSP 240 >gi|198284291|ref|YP_002220612.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|198248812|gb|ACH84405.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 361 Score = 41.4 bits (96), Expect = 0.32, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 41/160 (25%) Query: 196 VLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++V+IPA + N +V V V + + +RI P W +P++I Sbjct: 97 IIVDIPARRIYYFPVNDRVVYTYPVGVFLPGWKEALTDTRIIAKFKMPAWNVPKNIH--- 153 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ F ++ W PG N M +E Sbjct: 154 ---------------------AWFEKKFHMDIPWYW----------PPGPENPMGELAME 182 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 ++H T P +R + GC ++ N+ L Sbjct: 183 TGLS-GIFIHGTYHPW--GVGMRA-SQGCFQMFPENVAQL 218 >gi|153954544|ref|YP_001395309.1| Phage-related amidase [Clostridium kluyveri DSM 555] gi|146347402|gb|EDK33938.1| Predicted Phage-related amidase [Clostridium kluyveri DSM 555] Length = 279 Score = 41.4 bits (96), Expect = 0.32, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE- 163 G+ S V L+++L + G L + +D AV Q R G++ T Sbjct: 216 GHKSHIVLWLQQKLEMWGYLKKGSYTDMIYDEPTFQAVTELQKRWERPTDGVLRLETWSV 275 Query: 164 AMN 166 +N Sbjct: 276 FLN 278 >gi|307138337|ref|ZP_07497693.1| hypothetical protein EcolH7_09430 [Escherichia coli H736] gi|331642276|ref|ZP_08343411.1| putative LysM domain protein [Escherichia coli H736] gi|331039074|gb|EGI11294.1| putative LysM domain protein [Escherichia coli H736] Length = 177 Score = 41.4 bits (96), Expect = 0.32, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 LL + ++VN+ L G+ + + +G +TP++ +R+ + + NP W Sbjct: 88 LLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTW 147 Query: 245 VIPRSIIQKDM 255 I Q+ + Sbjct: 148 TPTAGIRQRSL 158 >gi|239979825|ref|ZP_04702349.1| hypothetical protein SalbJ_10322 [Streptomyces albus J1074] Length = 288 Score = 41.4 bits (96), Expect = 0.32, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + G +S V+ L+ RL G S + + AV +Q + L +G Sbjct: 80 PAVLMRPGQTSEQVRELQARLASLGLFGRSP--TGFYGDVTSEAVSAYQRKGALPVTGTT 137 Query: 158 DSSTLEAM 165 D+ T + + Sbjct: 138 DAVTWDRL 145 >gi|90418212|ref|ZP_01226124.1| lytic murein transglycosylase [Aurantimonas manganoxydans SI85-9A1] gi|90337884|gb|EAS51535.1| lytic murein transglycosylase [Aurantimonas manganoxydans SI85-9A1] Length = 395 Score = 41.4 bits (96), Expect = 0.33, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 2/73 (2%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P + + G + +RL++RL G + G+ +AV+ QMR GL Sbjct: 325 GAPPVDMGNPQPGLDLEATKRLQQRLTDLGY--DTGGVDGIIGENTRAAVRKEQMRLGLP 382 Query: 153 PSGMVDSSTLEAM 165 G + L A+ Sbjct: 383 ADGWPTADLLRAL 395 >gi|120536902|ref|YP_956960.1| peptidoglycan binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120326736|gb|ABM21045.1| Peptidoglycan-binding domain 1 protein [Marinobacter aquaeolei VT8] Length = 528 Score = 41.4 bits (96), Expect = 0.33, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 S V++L+E L + F A+K Q HGLD +G ++ TL Sbjct: 375 KPPKSPKEVKQLQETLKALNY--RPGPVDGIFGKQTRWAIKRLQQEHGLDITGWLNPETL 432 Query: 163 EAMNVP 168 A+ P Sbjct: 433 AALENP 438 >gi|257057487|ref|YP_003135319.1| negative regulator of beta-lactamase expression [Saccharomonospora viridis DSM 43017] gi|256587359|gb|ACU98492.1| negative regulator of beta-lactamase expression [Saccharomonospora viridis DSM 43017] Length = 311 Score = 41.4 bits (96), Expect = 0.33, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 3/52 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 L G+ S V + RL G P+ G FD AV F +GL Sbjct: 237 LRPGDRSEDVLLAQRRLRAHGYDVPAHG---VFDQATREAVAAFAASNGLAQ 285 >gi|3128477|gb|AAC31167.1| metalloproteinase [Arabidopsis thaliana] Length = 341 Score = 41.4 bits (96), Expect = 0.33, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 7/80 (8%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 Q I+ + P + VS+ ++ L G L +K D E A+ + Sbjct: 29 QQIIEARNPSQFTTNP----SPDVSIPEIKRHLQQYGYLPQNKESD---DVSFEQALVRY 81 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q GL +G DS TL + Sbjct: 82 QKNLGLPITGKPDSDTLSQI 101 >gi|15895771|ref|NP_349120.1| SpoIID-like domain-containing protein [Clostridium acetobutylicum ATCC 824] gi|15025528|gb|AAK80460.1|AE007749_7 SpoIID-like domain containing protein; peptidoglycan-binding domain [Clostridium acetobutylicum ATCC 824] gi|325509921|gb|ADZ21557.1| SpoIID-like domain protein containing protein [Clostridium acetobutylicum EA 2018] Length = 1042 Score = 41.4 bits (96), Expect = 0.33, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 PL+ G +S V L+ LI G S + + +S V Q ++ L +G VD++ Sbjct: 884 PLNYGMTSGDVTNLQNALIYLGYSISSA--TGYYGTQTKSVVSSIQSQNSLPVTGNVDTA 941 Query: 161 TLEAMNVPVDLRIRQLQVNL 180 TL +N + + +N Sbjct: 942 TLYVINSMLATKAGVKLLNF 961 >gi|218666907|ref|YP_002426952.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519120|gb|ACK79706.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 348 Score = 41.0 bits (95), Expect = 0.34, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 41/160 (25%) Query: 196 VLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++V+IPA + N +V V V + + +RI P W +P++I Sbjct: 84 IIVDIPARRIYYFPVNDRVVYTYPVGVFLPGWKEALTDTRIIAKFKMPAWNVPKNIH--- 140 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ F ++ W PG N M +E Sbjct: 141 ---------------------AWFEKKFHMDIPWYW----------PPGPENPMGELAME 169 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 ++H T P +R + GC ++ N+ L Sbjct: 170 TGLS-GIFIHGTYHPW--GVGMRA-SQGCFQMFPENVAQL 205 >gi|15225398|ref|NP_182030.1| matrix metalloproteinase [Arabidopsis thaliana] gi|26452204|dbj|BAC43190.1| putative metalloproteinase [Arabidopsis thaliana] gi|31711730|gb|AAP68221.1| At2g45040 [Arabidopsis thaliana] gi|330255405|gb|AEC10499.1| matrix metalloprotease domain-containing protein [Arabidopsis thaliana] Length = 342 Score = 41.0 bits (95), Expect = 0.34, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 7/80 (8%) Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 Q I+ + P + VS+ ++ L G L +K D E A+ + Sbjct: 29 QQIIEARNPSQFTTNP----SPDVSIPEIKRHLQQYGYLPQNKESD---DVSFEQALVRY 81 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q GL +G DS TL + Sbjct: 82 QKNLGLPITGKPDSDTLSQI 101 >gi|303286976|ref|XP_003062777.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455413|gb|EEH52716.1| predicted protein [Micromonas pusilla CCMP1545] Length = 370 Score = 41.0 bits (95), Expect = 0.34, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 26/60 (43%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G +S V L+ L G G + F +AVK +Q +G+ PSG + EA Sbjct: 96 GETSERVAELQRYLAGEGHYKYRDGATGYFGPITVNAVKNWQRFYGVKPSGGWGVESREA 155 >gi|225166759|ref|YP_002650744.1| hypothetical protein pC2C203U28_p026 [Clostridium botulinum] gi|253771353|ref|YP_003034239.1| peptidoglycan-binding domain 1 protein [Clostridium botulinum D str. 1873] gi|225007423|dbj|BAH29519.1| conserved hypothetical protein [Clostridium botulinum] gi|253721330|gb|ACT33623.1| peptidoglycan-binding domain 1 protein [Clostridium botulinum D str. 1873] Length = 207 Score = 41.0 bits (95), Expect = 0.34, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G + S+ ++ L I+ + F VK Q R GLD G+V T Sbjct: 3 LKKGMQNNSITYIQYGLRIT--CINPGNVDGIFGENTYIGVKKLQQRFGLDVDGIVGPGT 60 Query: 162 LEAM 165 E + Sbjct: 61 WEKL 64 >gi|90418402|ref|ZP_01226314.1| putative efflux transporter, RND family, membrane fusion protein subunit [Aurantimonas manganoxydans SI85-9A1] gi|90338074|gb|EAS51725.1| putative efflux transporter, RND family, membrane fusion protein subunit [Aurantimonas manganoxydans SI85-9A1] Length = 517 Score = 41.0 bits (95), Expect = 0.34, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V+ L++RL G + + A +A++ +Q +GL+ +G V + A+ Sbjct: 455 VRALQQRLETLGYSPGT--VDGVLGASTRAAIRAYQRDNGLEVTGEVTPALAGAL 507 >gi|310825599|ref|YP_003957957.1| peptidoglycan binding-like protein [Stigmatella aurantiaca DW4/3-1] gi|309398671|gb|ADO76130.1| Peptidoglycan binding-like protein [Stigmatella aurantiaca DW4/3-1] Length = 538 Score = 41.0 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 17/74 (22%) Query: 104 LGNSSVSVQ----RLRERLIISGDLDPSKGLSVAFDAYVESAV------------KLFQM 147 +G +V ++++RL G L + D AV + FQ Sbjct: 145 VGARGANVPADVRQVQDRLHELGFLSDEAYTAEQADPAQTEAVAEAAMPQTIEAIREFQR 204 Query: 148 R-HGLDPSGMVDSS 160 G+ P G V + Sbjct: 205 EVAGITPDGNVGPN 218 >gi|256395922|ref|YP_003117486.1| peptidoglycan-binding protein [Catenulispora acidiphila DSM 44928] gi|256362148|gb|ACU75645.1| Peptidoglycan-binding domain 1 protein [Catenulispora acidiphila DSM 44928] Length = 389 Score = 41.0 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 7/72 (9%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLD---PSKGLSVAFDAYVESAVKLFQMRH--GLDPS- 154 L LG+S +V +L++ L + +S +D+ + AV+ FQ + P Sbjct: 313 SLKLGSSGAAVTQLQQNLRRWQRSSFGWSTIQVSGNYDSATQDAVQSFQDNNPGTSPPDP 372 Query: 155 -GMVDSSTLEAM 165 G+ +T +A+ Sbjct: 373 AGVYGPATDQAL 384 >gi|321314927|ref|YP_004207214.1| putative phage N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis BSn5] gi|320021201|gb|ADV96187.1| putative phage N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis BSn5] Length = 80 Score = 41.0 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 16/26 (61%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAM 165 AV+ FQ+ +GL+P+G+ T + Sbjct: 50 DAVRRFQLMNGLNPNGIYGPKTKAKL 75 >gi|297194196|ref|ZP_06911594.1| membrane protein [Streptomyces pristinaespiralis ATCC 25486] gi|197722549|gb|EDY66457.1| membrane protein [Streptomyces pristinaespiralis ATCC 25486] Length = 434 Score = 41.0 bits (95), Expect = 0.35, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 24/80 (30%), Gaps = 5/80 (6%) Query: 91 RGGWPELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSV----AFDAYVESAVKLF 145 + G P P R G SS V +L +RL+ G D A + Sbjct: 353 QAGTPAFPGRAHFRPGRSSTYVTQLGKRLVERGYGKHYTSGPDPRWREADRRNVQAFQRA 412 Query: 146 QMRHGLDPSGMVDSSTLEAM 165 Q G G T + Sbjct: 413 QGWRGAAADGYPGPETWRRL 432 >gi|84622730|ref|YP_450102.1| hypothetical protein XOO_1073 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366670|dbj|BAE67828.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 330 Score = 41.0 bits (95), Expect = 0.36, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 PG N + I+ + Y +H TPEP +V + E+ GCVR+ N Sbjct: 267 PPGPNNPVGRVWIDLSKPH--YGLHGTPEPG---HVGKTESHGCVRLTNWD 312 >gi|153810528|ref|ZP_01963196.1| hypothetical protein RUMOBE_00909 [Ruminococcus obeum ATCC 29174] gi|149833707|gb|EDM88788.1| hypothetical protein RUMOBE_00909 [Ruminococcus obeum ATCC 29174] Length = 442 Score = 41.0 bits (95), Expect = 0.36, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQM-RHG-LDPS 154 + + LG++ SV L+E LI G + LS D A+K +Q R G L+ Sbjct: 369 KLVKLGSTGTSVLLLQEILIARGFKGKNGKTLTLSRKADENTIYALKTYQKSRKGVLEAD 428 Query: 155 GMVDSSTLEAM 165 G+ T + + Sbjct: 429 GIAGEKTWKDL 439 >gi|120554507|ref|YP_958858.1| peptidoglycan binding domain-containing protein [Marinobacter aquaeolei VT8] gi|120324356|gb|ABM18671.1| Peptidoglycan-binding domain 1 protein [Marinobacter aquaeolei VT8] Length = 562 Score = 41.0 bits (95), Expect = 0.36, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 5/69 (7%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 + L ERL G D V+ +Q + GL G+ + T+ MN Sbjct: 490 GARMMELAERLSSGGQEAARVKRMEMTDQ-----VRWYQEKRGLTVDGIAGAMTIIQMNN 544 Query: 168 PVDLRIRQL 176 + I +L Sbjct: 545 DLAENIPRL 553 >gi|323484631|ref|ZP_08089993.1| hypothetical protein HMPREF9474_01744 [Clostridium symbiosum WAL-14163] gi|323694833|ref|ZP_08108988.1| spore cortex-lytic enzyme SleC [Clostridium symbiosum WAL-14673] gi|323402014|gb|EGA94350.1| hypothetical protein HMPREF9474_01744 [Clostridium symbiosum WAL-14163] gi|323501149|gb|EGB17056.1| spore cortex-lytic enzyme SleC [Clostridium symbiosum WAL-14673] Length = 427 Score = 41.0 bits (95), Expect = 0.36, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 96 ELPIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLD 152 P L +G+S V++++E+L I + P + + +VK+FQ GL Sbjct: 341 SFPGTNLTIGSSGDKVRQMQEQLDTIATVYSSIPRVAIDGIYGPATAESVKVFQSVFGLP 400 Query: 153 PSGMVDSSTLE 163 +G+VD +T Sbjct: 401 QTGVVDFATWY 411 >gi|292669250|ref|ZP_06602676.1| LysM domain protein [Selenomonas noxia ATCC 43541] gi|292649091|gb|EFF67063.1| LysM domain protein [Selenomonas noxia ATCC 43541] Length = 233 Score = 41.0 bits (95), Expect = 0.36, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G +V+ ++E LI +G LD +A++ Q H L G+ +T Sbjct: 56 KEGMRGGAVRHVQELLIQAGYLDGGADGIAG--PLTRAAIERCQADHMLVVDGICGEATY 113 Query: 163 EAMNVPVD 170 ++ + Sbjct: 114 RVLSGGAE 121 >gi|160898818|ref|YP_001564400.1| peptidoglycan-binding domain-containing protein [Delftia acidovorans SPH-1] gi|160364402|gb|ABX36015.1| Peptidoglycan-binding domain 1 protein [Delftia acidovorans SPH-1] Length = 586 Score = 41.0 bits (95), Expect = 0.36, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 G + + + +R+ LI G L P A + A+ FQ G+ SG+VD +T Sbjct: 322 YEEGEAGIHQELVRQSLISKGYLPPDAPAFTAGNPQWREAIGRFQADSGMVVSGVVDFNT 381 Query: 162 LE 163 E Sbjct: 382 YE 383 >gi|307266055|ref|ZP_07547601.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306918924|gb|EFN49152.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 350 Score = 41.0 bits (95), Expect = 0.36, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 R L+ G V+ L+ L +G + + F + V FQ P G Sbjct: 33 TFGSRLLYSGTYGTDVEELQAMLNKAGF--DTGTVDGIFGKMTLNGVLDFQRYKNFVPDG 90 Query: 156 MVDSSTLEAM 165 +V T A+ Sbjct: 91 IVGPKTYAAL 100 >gi|291547836|emb|CBL20944.1| Putative peptidoglycan-binding domain-containing protein [Ruminococcus sp. SR1/5] Length = 424 Score = 41.0 bits (95), Expect = 0.37, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G + VQ+++E+L I+ PS + + ++VK FQ GL S Sbjct: 340 PGYDLTIGVTGEKVQQIQEQLNAIAKAYPAIPSVTVDGIYGPATAASVKKFQNIFGLPAS 399 Query: 155 GMVDSSTLE 163 G+VD T Sbjct: 400 GVVDYPTWY 408 >gi|332707297|ref|ZP_08427350.1| peptidoglycan binding domain protein [Lyngbya majuscula 3L] gi|332354031|gb|EGJ33518.1| peptidoglycan binding domain protein [Lyngbya majuscula 3L] Length = 422 Score = 41.0 bits (95), Expect = 0.37, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G+ V ++ +L D + + E AV LFQ GL G+VDS T Sbjct: 61 LLKGSRGKEVALVQAKLKHLDFYDGLEDG--VYGEDTEKAVALFQESVGLRKLGVVDSVT 118 Query: 162 LEAM 165 + + Sbjct: 119 RKEL 122 >gi|311070871|ref|YP_003975794.1| YbfG protein [Bacillus atrophaeus 1942] gi|310871388|gb|ADP34863.1| YbfG [Bacillus atrophaeus 1942] Length = 725 Score = 41.0 bits (95), Expect = 0.37, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 9/63 (14%) Query: 129 GLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEA-MNVPV-------DLRIRQLQVN 179 G + F E+AVK FQ GL G+V + ++A +++ + R+RQ+Q N Sbjct: 96 GFTGVFFEQTENAVKKFQKAAGLTTQDGVVTALIMKALLDMSAFRLVPGGNSRVRQIQQN 155 Query: 180 LMR 182 L R Sbjct: 156 LNR 158 >gi|238059219|ref|ZP_04603928.1| N-acetylmuramoyl-L-alanine amidase family 2 [Micromonospora sp. ATCC 39149] gi|237881030|gb|EEP69858.1| N-acetylmuramoyl-L-alanine amidase family 2 [Micromonospora sp. ATCC 39149] Length = 420 Score = 41.0 bits (95), Expect = 0.37, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S V ++ L G D ++ FD AV+ Q H L P G VD+ST A+ Sbjct: 352 SGAPVSAVQFILEWKGYAD--VAVTGEFDHATRRAVQDVQRLHSLPPDGRVDTSTWCAI 408 Score = 37.5 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 SS SV+ ++ L G + P ++ FDA +AV+ +Q R+G+ Sbjct: 286 SSPSVRVVQYLLTHRGYMVP---VNSTFDAATVAAVQDWQARNGIPVD 330 >gi|229551060|ref|ZP_04439785.1| peptidoglycan binding domain protein [Lactobacillus rhamnosus LMS2-1] gi|258538230|ref|YP_003172729.1| YkuG protein [Lactobacillus rhamnosus Lc 705] gi|229315655|gb|EEN81628.1| peptidoglycan binding domain protein [Lactobacillus rhamnosus LMS2-1] gi|257149906|emb|CAR88878.1| YkuG protein [Lactobacillus rhamnosus Lc 705] Length = 775 Score = 41.0 bits (95), Expect = 0.37, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 19/126 (15%) Query: 74 TIAQTEKAIAFYQDILSRG-GWPELP-------IRPLHLGNSSVSVQRLRERLIISGDLD 125 TI +A+ I S G G+ + L G Q ++ G ++ Sbjct: 36 TIYALREALQHELGISSIGEGFGTATRTALSGVVDQLKPGYKGNIAQLIQGAFWCKG-IN 94 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM-NVPV-------DLRIRQLQ 177 P L+ F A E A K Q GL G V + + A+ ++ D +RQLQ Sbjct: 95 PGTELNQNFSAETEQAFKSLQQDAGLTADGTVTVNLMAALFDMSAFVLVSGGDANVRQLQ 154 Query: 178 --VNLM 181 +N Sbjct: 155 QWLNAE 160 >gi|209518462|ref|ZP_03267284.1| Peptidoglycan-binding domain 1 protein [Burkholderia sp. H160] gi|209501095|gb|EEA01129.1| Peptidoglycan-binding domain 1 protein [Burkholderia sp. H160] Length = 362 Score = 41.0 bits (95), Expect = 0.37, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 RP+ S+++V +++ +L G P A+K FQ GL +G D Sbjct: 296 TRPVPPEASAMTVAQMQAKLNALGF--PVGTPDGHMGNRTRRALKYFQKSQGLPQTGEPD 353 Query: 159 SSTLEAM 165 S+T+ A+ Sbjct: 354 SATVAAL 360 >gi|115375119|ref|ZP_01462387.1| putative peptidoglycan binding domain protein [Stigmatella aurantiaca DW4/3-1] gi|115367865|gb|EAU66832.1| putative peptidoglycan binding domain protein [Stigmatella aurantiaca DW4/3-1] Length = 491 Score = 41.0 bits (95), Expect = 0.37, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 17/74 (22%) Query: 104 LGNSSVSVQ----RLRERLIISGDLDPSKGLSVAFDAYVESAV------------KLFQM 147 +G +V ++++RL G L + D AV + FQ Sbjct: 98 VGARGANVPADVRQVQDRLHELGFLSDEAYTAEQADPAQTEAVAEAAMPQTIEAIREFQR 157 Query: 148 R-HGLDPSGMVDSS 160 G+ P G V + Sbjct: 158 EVAGITPDGNVGPN 171 >gi|255319277|ref|ZP_05360494.1| secretion activator protein [Acinetobacter radioresistens SK82] gi|255303670|gb|EET82870.1| secretion activator protein [Acinetobacter radioresistens SK82] Length = 255 Score = 41.0 bits (95), Expect = 0.38, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 A+K Q G+ G++ T+ A+N +DL L + R+K Sbjct: 183 AIKELQQVAGVPADGIIGPKTIAAVNA-MDLNDVLLTLTAERLK 225 >gi|255083362|ref|XP_002504667.1| predicted protein [Micromonas sp. RCC299] gi|226519935|gb|ACO65925.1| predicted protein [Micromonas sp. RCC299] Length = 497 Score = 41.0 bits (95), Expect = 0.38, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 7/120 (5%) Query: 48 VNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRG-GWPELPIRPLHLGN 106 + + + D D P+ E +K + I + G WP L L + Sbjct: 335 WSKNVVSLVDNPDNDPGDDAPVWGDEQNRPIDKVSEEFTQIATSGEKWPV-----LRLED 389 Query: 107 SSVSVQRLRERLIISGDLDPSKGLSV-AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + V +L L +G + + +F E+A+ FQ +GL +G+ T +A+ Sbjct: 390 GGMEVHKLHVLLDSAGYYSGEEDMEWWSFGGSTENALGTFQASNGLPDTGLTCLLTWKAL 449 >gi|122879074|ref|YP_199818.6| hypothetical protein XOO1179 [Xanthomonas oryzae pv. oryzae KACC10331] Length = 330 Score = 41.0 bits (95), Expect = 0.38, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 PG N + I+ + Y +H TPEP +V + E+ GCVR+ N Sbjct: 267 PPGPNNPVGRVWIDLSKPH--YGLHGTPEPG---HVGKTESHGCVRLTNWD 312 >gi|313113431|ref|ZP_07799020.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624158|gb|EFQ07524.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 230 Score = 41.0 bits (95), Expect = 0.39, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+ V L++ L G S+ + F A E A+K FQ R L G+ Sbjct: 152 TLRRGSRGCYVMILQDALSTLGYQTGSR-IDGIFGARTEEALKGFQRRTSLRVDGVCG 208 >gi|295319659|gb|ADG00037.1| putative peptidoglycan-binding protein [Clostridium botulinum F str. 230613] Length = 46 Score = 41.0 bits (95), Expect = 0.39, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 15/37 (40%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 G FD +K FQ L G+V T +A+ Sbjct: 5 GADDVFDNGTVVGIKYFQRDCNLSVDGIVGRETWKAL 41 >gi|297562125|ref|YP_003681099.1| peptidoglycan-binding protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846573|gb|ADH68593.1| Peptidoglycan-binding domain 1 protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 193 Score = 41.0 bits (95), Expect = 0.39, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 2/58 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G++ V ++ L + + E AV+ Q G+ G+ Sbjct: 124 FRRGDTGPVVTMIQRELNAK--FNAHLATDGVYGPATERAVRAAQEHFGIGVDGVFGP 179 Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 7/70 (10%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WPE LG+SS+ V + L+ SG+++P + L++ FD + + +Q GL Sbjct: 50 WPE-----YTLGDSSIDVYA-AKMLLSSGEINPGE-LNLEFDQDLHDTLVTYQEAFGLHN 102 Query: 154 SGMVDSSTLE 163 G ++ T E Sbjct: 103 DGDLNPDTWE 112 >gi|228924445|ref|ZP_04087671.1| general secretion pathway protein A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835210|gb|EEM80625.1| general secretion pathway protein A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 54 Score = 41.0 bits (95), Expect = 0.39, Method: Composition-based stats. Identities = 10/28 (35%), Positives = 14/28 (50%) Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + +K FQ H L G+V STL + Sbjct: 1 MVEKIKQFQKSHHLKTDGVVGFSTLVHL 28 >gi|47523768|ref|NP_999520.1| epoxide hydrolase 1 [Sus scrofa] gi|75069447|sp|P79381|HYEP_PIG RecName: Full=Epoxide hydrolase 1; AltName: Full=Epoxide hydratase; AltName: Full=Microsomal epoxide hydrolase gi|1840391|dbj|BAA19200.1| epoxide hydrolase [Sus scrofa] Length = 454 Score = 41.0 bits (95), Expect = 0.39, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 20/53 (37%) Query: 342 GCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATEVPVHFVYIS 394 GC + + L ++L+ TW+ ++ L + V +Y + Sbjct: 310 GCALNDSPVGLAAYILEKFSTWTNEEFRDLEDGGLERKFSLDELLTVIMLYWT 362 >gi|254426139|ref|ZP_05039856.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] gi|196188562|gb|EDX83527.1| Putative peptidoglycan binding domain protein [Synechococcus sp. PCC 7335] Length = 1128 Score = 41.0 bits (95), Expect = 0.39, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 49/145 (33%), Gaps = 26/145 (17%) Query: 23 GLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAI 82 SL KP + D E + +I ++R R + SK T +++K + Sbjct: 654 AASLRSKPSNPRQADA--KEGWTNIKDNRPKPSNPRQADAKEGWT-SRSKPTNPRSDKGL 710 Query: 83 AFYQDILSRGGWPELPIRPLHLGN---SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 Y+ G S V++ + + G + + + Sbjct: 711 LTYR-----------------PGAEMISGNRVKQWQRAMRRQGY---DIAVDGIYGPQSQ 750 Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEA 164 S + FQ + GLD G+V T A Sbjct: 751 SVARQFQRKKGLDTDGIVGPKTWAA 775 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 6/67 (8%) Query: 101 PLHLGN---SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G S V++ + + G + + +S + FQ + GLD G+V Sbjct: 592 TYRPGAEMISGNRVKQWQRAMRRQGY---DIAVDGIYGPQSQSVARQFQRKKGLDTDGIV 648 Query: 158 DSSTLEA 164 T A Sbjct: 649 GPKTWAA 655 >gi|186682714|ref|YP_001865910.1| ErfK/YbiS/YcfS/YnhG family protein [Nostoc punctiforme PCC 73102] gi|186465166|gb|ACC80967.1| ErfK/YbiS/YcfS/YnhG family protein [Nostoc punctiforme PCC 73102] Length = 182 Score = 41.0 bits (95), Expect = 0.39, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 60/160 (37%) Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDP 263 + ++ +V + +G+ +TP+ + ++ + NP I + Sbjct: 66 QVYVYQDKQVLKSFPIAIGKSGWETPLGNYQVIYMKKNP-------IFKN---------- 108 Query: 264 QYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY- 322 K NI M PG N + I F Y Sbjct: 109 --FKTGNIIM----------------------------PGANNPLGKRVIVFK----IYK 134 Query: 323 -----MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLL 357 H T + L + GC+R+ N + ++ L Sbjct: 135 KSHLAFHGTNQDKLIGK---AVSHGCIRMLNKDVIALYEL 171 >gi|284054140|ref|ZP_06384350.1| extracellular solute-binding protein [Arthrospira platensis str. Paraca] Length = 401 Score = 41.0 bits (95), Expect = 0.40, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + L+ RL G + + + A+ FQ+ GL+ +G+V+ T + Sbjct: 70 GDYD--IIELQNRLQQKGYYLGA--IDGIYGEQTREAISNFQLDIGLENTGIVNQETWDY 125 Query: 165 M--NVPVDLRIRQLQVNL 180 + N V + Q ++ Sbjct: 126 LLGNAAVIAQANQSLNSM 143 >gi|255554154|ref|XP_002518117.1| conserved hypothetical protein [Ricinus communis] gi|223542713|gb|EEF44250.1| conserved hypothetical protein [Ricinus communis] Length = 386 Score = 41.0 bits (95), Expect = 0.40, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L G+ V+ ++E L+ G + + +F + E AVK +Q G G++ + Sbjct: 169 TLRKGSEGDEVREMQEALLNLGFYSGEEDMEFSSFSSGTERAVKTWQASLGAPEDGIMTA 228 Query: 160 STLEAM 165 LE + Sbjct: 229 ELLERL 234 >gi|118595120|ref|ZP_01552467.1| ErfK/YbiS/YcfS/YnhG [Methylophilales bacterium HTCC2181] gi|118440898|gb|EAV47525.1| ErfK/YbiS/YcfS/YnhG [Methylophilales bacterium HTCC2181] Length = 160 Score = 41.0 bits (95), Expect = 0.40, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 49/161 (30%), Gaps = 33/161 (20%) Query: 196 VLVNIPAASLEAVENGKVGLRSTV-----IVG--RVDRQTPILHSRINRIMFNPYWVIPR 248 + +++ + L + G++ V VG + +TP+ + I ++ Sbjct: 5 INISVSSQKLSLFQEGELVSSYKVSTALKGVGQEKNTNKTPLGNHIIRAMI--------- 55 Query: 249 SIIQKDMMALLRQDPQYLKDNNIHMIDE-KGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 R P Y +E KE+ + + N Sbjct: 56 ----------GRNLPIYAVIKARRYTNEIWTKELDDPSITVDWILSRVIWLSGKDLGRNR 105 Query: 308 MASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 + + + Y+H T E L + GC+R+ N Sbjct: 106 LGNVDTM---QRYIYIHGTNEEHLLGTPS---SHGCIRMSN 140 >gi|296447409|ref|ZP_06889335.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylosinus trichosporium OB3b] gi|296255112|gb|EFH02213.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylosinus trichosporium OB3b] Length = 249 Score = 41.0 bits (95), Expect = 0.41, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 4/72 (5%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-P 153 P + L G V L++ L G P +S +D + V FQ Sbjct: 170 PIVGGAALEPGAEGGEVSALQQALADYGYKSP---VSGCYDEGAAAVVAAFQRHFRPRLV 226 Query: 154 SGMVDSSTLEAM 165 G D STL+ + Sbjct: 227 DGRADRSTLDTL 238 >gi|225377726|ref|ZP_03754947.1| hypothetical protein ROSEINA2194_03377 [Roseburia inulinivorans DSM 16841] gi|225210403|gb|EEG92757.1| hypothetical protein ROSEINA2194_03377 [Roseburia inulinivorans DSM 16841] Length = 425 Score = 41.0 bits (95), Expect = 0.41, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 6/73 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLI-ISGDLD--PSKGLSVAFDAYVESAVKLFQMRHG 150 WP L +G + V++++E+L IS P+ + +AV+ FQ G Sbjct: 340 WPR---YNLEVGAAGDKVRQIQEQLARISQAYPAIPTITPDGIYGEATRAAVEKFQSIFG 396 Query: 151 LDPSGMVDSSTLE 163 L +G+VD T Sbjct: 397 LPVTGVVDYRTWY 409 >gi|291303383|ref|YP_003514661.1| peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] gi|290572603|gb|ADD45568.1| Peptidoglycan-binding domain 1 protein [Stackebrandtia nassauensis DSM 44728] Length = 381 Score = 41.0 bits (95), Expect = 0.41, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R + +G+ V++L + L G + F A +AV+ +Q GL +G V Sbjct: 142 RDMKVGDEGSDVKQLEKNLAKLGY--DGFTVDKEFTADTATAVREWQDDLGLKETGTV 197 >gi|188996949|ref|YP_001931200.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932016|gb|ACD66646.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 464 Score = 41.0 bits (95), Expect = 0.41, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 61/188 (32%), Gaps = 48/188 (25%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEA---VENGKVGLRSTVIVGRVDRQTPILHSRINRIMF 240 + L + + +NI L + + + + +G + Q+PI +I++ Sbjct: 268 RILPVKDFKYGMIYINIYEKRLYYPIKINDESYVITYPIGIGADEAQSPIGEFKISQKRK 327 Query: 241 NPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQ 300 +P W P SI +K+ P+ Sbjct: 328 DPAWYPPESI-RKE--------------------------------------QPDLPPVF 348 Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLK 358 PG N + + + + + MH T + V + GC+R+ ++ L + Sbjct: 349 PPGPDNPLGTRAMRLGNT-SFLMHGTNKEYGIGMKV---SHGCIRMYNEDVEKLFEVVDI 404 Query: 359 DTPTWSRY 366 TP SR Sbjct: 405 GTPIVSRE 412 >gi|47228071|emb|CAF97700.1| unnamed protein product [Tetraodon nigroviridis] Length = 549 Score = 41.0 bits (95), Expect = 0.41, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + + + SA+ Q +GL +G +D ST++AM P D Sbjct: 5 LQQYGYLPPGDMRTHSLRSPHSITSAIAAMQRFYGLTVTGAIDDSTIQAMKRPRCGVPDK 64 Query: 172 RIRQLQVNLMRIK 184 +L+ NL R + Sbjct: 65 FGAELKSNLRRKR 77 >gi|150377011|ref|YP_001313607.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] gi|150031558|gb|ABR63674.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium medicae WSM419] Length = 327 Score = 41.0 bits (95), Expect = 0.42, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 16/113 (14%) Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 P SI + P + + + V+ EV++ + G N Sbjct: 218 PASIGSE-------ASPSPSGRHKVKGVARMPPYVYDPEVNFQQADNNK-PLTLPKGPNN 269 Query: 307 AMASTKIEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 + + I+ H TPEP L + ++ GCVR+ N +L + Sbjct: 270 PVGTVWIDLTKPTYGI--HGTPEPSLIDK---AQSHGCVRLTNWDAEELAEMV 317 >gi|321462023|gb|EFX73050.1| hypothetical protein DAPPUDRAFT_325672 [Daphnia pulex] Length = 533 Score = 41.0 bits (95), Expect = 0.42, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Query: 118 LIISGDLDPSKGLSVAFD---AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L+P S V +A+ FQ GLDP+G+V+ TL M P Sbjct: 31 LASFGYLEPRLKNSSTASVSANTVRNAISDFQSYAGLDPTGIVNEETLTWMRKP 84 >gi|258653019|ref|YP_003202175.1| peptidoglycan-binding protein [Nakamurella multipartita DSM 44233] gi|258556244|gb|ACV79186.1| Peptidoglycan-binding domain 1 protein [Nakamurella multipartita DSM 44233] Length = 554 Score = 41.0 bits (95), Expect = 0.42, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 7/87 (8%) Query: 86 QDILSRGGWPELPIRP-------LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 + ++ G ++P P L +G V+V+ L+ERL SG + F Sbjct: 140 ETVVDGPGATQVPSNPAAGTHAQLQVGAKGVAVKELQERLNNSGVAGAKLLVDGIFGPKT 199 Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ +K FQ + +G+ D +T + Sbjct: 200 DAGLKTFQGTIPVAATGIADPATWTKL 226 >gi|194014667|ref|ZP_03053284.1| N-acetylmuramoyl-L-alanine amidase XlyA (Cellwall hydrolase) (Autolysin) [Bacillus pumilus ATCC 7061] gi|194013693|gb|EDW23258.1| N-acetylmuramoyl-L-alanine amidase XlyA (Cellwall hydrolase) (Autolysin) [Bacillus pumilus ATCC 7061] Length = 299 Score = 41.0 bits (95), Expect = 0.42, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 9/97 (9%) Query: 70 ISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGN---SSVSVQRLRERLIISGDLD- 125 IS Q + + Y++ ELP L + + V+ +++ L Sbjct: 193 ISDPNKIQIGQVLKIYRNDAKS--LYELPNGVLKVTSPLTKGEHVRLVQQALAAVYFYPD 250 Query: 126 ---PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 +KG+ + +AV FQ+ +GL G+ Sbjct: 251 KAAANKGIDGVYGEKTANAVARFQLVNGLTSDGVYGP 287 >gi|188578233|ref|YP_001915162.1| ErfK/YbiS/YcfS/YnhG [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522685|gb|ACD60630.1| ErfK/YbiS/YcfS/YnhG [Xanthomonas oryzae pv. oryzae PXO99A] Length = 271 Score = 41.0 bits (95), Expect = 0.42, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 PG N + I+ + Y +H TPEP +V + E+ GCVR+ N Sbjct: 208 PPGPNNPVGRVWIDLSKPH--YGLHGTPEPG---HVGKTESHGCVRLTNWD 253 >gi|13488433|ref|NP_109440.1| hypothetical protein mll9583 [Mesorhizobium loti MAFF303099] gi|14028187|dbj|BAB54779.1| mll9583 [Mesorhizobium loti MAFF303099] Length = 376 Score = 41.0 bits (95), Expect = 0.42, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 44/158 (27%) Query: 195 YVLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQK 253 V V+ + A E+G + +G + +P + ++ NP + Sbjct: 244 RVEVDKAEGQVRAYAEDGSLLAAFPATIGSEENPSPSGMHTVRAVVSNPSYT-------- 295 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 L + + NN ++ PG + + I Sbjct: 296 -YNPKL----NFKQGNNDKVLTL------------------------PPGPNGPVGTVWI 326 Query: 314 EFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNII 350 + H TPEP + + + GCVR+ N Sbjct: 327 DLSEPSFGI--HGTPEP---ARIDKTGSHGCVRLTNWD 359 Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDA-YVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 S S+ RL+ L +G S G+ D + A+ F+M GL G + + A+ Sbjct: 102 SPSIVRLQVLLDRAG---ASPGVIDGLDGGNLRHAIAAFEMMRGLPVDGRIGPQVIAAI 157 >gi|15614028|ref|NP_242331.1| hypothetical protein BH1465 [Bacillus halodurans C-125] gi|10174082|dbj|BAB05184.1| BH1465 [Bacillus halodurans C-125] Length = 170 Score = 41.0 bits (95), Expect = 0.42, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 21/44 (47%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 +G +++VNI L V+ GK+ + G+ +TP+ Sbjct: 22 PNPTVGDPFLIVNIATNRLAYVDEGKIQKIVPIATGKPSDKTPV 65 >gi|257791952|ref|YP_003182558.1| ErfK/YbiS/YcfS/YnhG family protein [Eggerthella lenta DSM 2243] gi|257475849|gb|ACV56169.1| ErfK/YbiS/YcfS/YnhG family protein [Eggerthella lenta DSM 2243] Length = 552 Score = 41.0 bits (95), Expect = 0.43, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%) Query: 189 QKMGLRYVLVNIPAASLEAVEN-GKVGLRSTVIVGRVD--RQTPI 230 + G RYV V++ ++ G + S V+ G D TP Sbjct: 416 RDWGKRYVDVDLTEQHARFYDDEGSLAWESDVVTGTPDGEHDTPE 460 >gi|146329639|ref|YP_001209845.1| hypothetical protein DNO_0956 [Dichelobacter nodosus VCS1703A] gi|146233109|gb|ABQ14087.1| hypothetical protein DNO_0956 [Dichelobacter nodosus VCS1703A] Length = 478 Score = 41.0 bits (95), Expect = 0.43, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 16/110 (14%) Query: 79 EKAIAFYQDILSRGG------WPELPIRPLHLGNSSVSVQRLRERLIISG--DLDPSKGL 130 E + Y D+ + GG W + + G S ++ RLI +G LD G+ Sbjct: 57 EYGLTLY-DLAAMGGASELQQW-LVKQKVAKEGEYSSALI----RLIQTGLRFLDFDAGV 110 Query: 131 -SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVN 179 ++ +S +K FQ +G + + L N + +++Q ++N Sbjct: 111 IDGVYNQDTQSGIKAFQKSQKQKTTGKITADWLRIFNRRLTAKVQQ-RLN 159 >gi|295445967|gb|ADG21911.1| amidase [Alcaligenes sp. WRB10] Length = 254 Score = 41.0 bits (95), Expect = 0.43, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 33/122 (27%) Query: 1 MVGYL--------KINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRF 52 M+GYL K + LY Y + LS +IN+ ++ + Sbjct: 157 MMGYLHFIANIPVKGTRWLYSSKPYALATPPLS-------------VINQWQQALDKGQL 203 Query: 53 DNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIR-PLHLGNSSVSV 111 F+A + + E +A + WP+L + L G S V Sbjct: 204 PTFVAGLAPQH--------PQYAVMHESLLAL---LSDTKPWPQLTGKATLRPGQWSNDV 252 Query: 112 QR 113 Sbjct: 253 PA 254 >gi|109392314|ref|YP_655544.1| gp27 [Mycobacterium phage Halo] gi|189043114|ref|YP_001936055.1| hypothetical protein BPs1_27 [Mycobacterium phage BPs] gi|239590038|ref|YP_002941885.1| gp27 [Mycobacterium phage Angel] gi|91980564|gb|ABE67284.1| hypothetical protein Halo27 [Mycobacterium phage Halo] gi|171909229|gb|ACB58186.1| hypothetical protein BPs1_27 [Mycobacterium phage BPs] gi|238890570|gb|ACR77559.1| gp27 [Mycobacterium phage Angel] gi|255927871|gb|ACU41491.1| gp27 [Mycobacterium phage Hope] Length = 438 Score = 41.0 bits (95), Expect = 0.43, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 4/64 (6%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGMVDSST 161 G V+ L+ RL + F + E+ V+ +Q H L G+V +T Sbjct: 374 RPGQDPRQVRVLQTRLKR---AYSKLDVDGIFGPHTEACVRDYQHLHPPLVADGIVGPAT 430 Query: 162 LEAM 165 A+ Sbjct: 431 AAAL 434 >gi|209885148|ref|YP_002289005.1| lytic murein transglycosylase [Oligotropha carboxidovorans OM5] gi|209873344|gb|ACI93140.1| lytic murein transglycosylase [Oligotropha carboxidovorans OM5] Length = 409 Score = 40.6 bits (94), Expect = 0.44, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +Q ++ RL +G + G AVK FQ R GL P G L + Sbjct: 351 AEIQEVQTRLTKAGF--DTGGTDGRVGNDTMKAVKDFQTRAGLTPDGYAGLKVLARL 405 >gi|260907624|ref|ZP_05915946.1| putative phage integrase [Brevibacterium linens BL2] Length = 401 Score = 40.6 bits (94), Expect = 0.44, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Query: 97 LPIRPLHLGN--SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + R L +S +V+RL++ L +S S + +AV+ Q +GL + Sbjct: 258 VSNRALKPAVELASGAVERLQDALSVSEY---SGDFFHVYGPDTVAAVERVQRENGLSVT 314 Query: 155 GMVDSSTLEAM 165 G D++T EA+ Sbjct: 315 GRADAATREAI 325 >gi|15613529|ref|NP_241832.1| N-acetylmuramoyl-L-alanine amidase (sporulation mother cell wall hydrolase) [Bacillus halodurans C-125] gi|10173581|dbj|BAB04685.1| N-acetylmuramoyl-L-alanine amidase (sporulation mother cell wall hydrolase) [Bacillus halodurans C-125] Length = 338 Score = 40.6 bits (94), Expect = 0.44, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 9/131 (6%) Query: 39 IINESYHS--IVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPE 96 I+ + + D+F +AR +D + + +T A + + G + Sbjct: 143 FIDNPADAALLKEDQFITKIARGHAEGIADAFGLKR----RTGSASVAKKQKAAVGASKQ 198 Query: 97 LPIRPLHLGNSS-VSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 + L +V L+ +L+ G DL + VA + +A+K FQ + + Sbjct: 199 VTTSGYDLIQRYFSNVSVLQRQLMAVGEDLSRYRDDGVAGKETL-TAIKSFQRKERITVD 257 Query: 155 GMVDSSTLEAM 165 G+ T + Sbjct: 258 GIPGPVTQSRL 268 Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 13/35 (37%) Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F E + +Q +HGL G V T M Sbjct: 302 DSLFGPQTERGARHYQQKHGLTVDGKVGPQTWGHM 336 >gi|331005107|ref|ZP_08328510.1| General secretion pathway protein A [gamma proteobacterium IMCC1989] gi|330421076|gb|EGG95339.1| General secretion pathway protein A [gamma proteobacterium IMCC1989] Length = 613 Score = 40.6 bits (94), Expect = 0.45, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 18/33 (54%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 ++ +E ++LFQ ++GL G TL +N Sbjct: 557 YNRLLEKRIRLFQKKYGLKEDGKAGMETLLKLN 589 >gi|16077289|ref|NP_388102.1| pepdidoglycan binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|221308033|ref|ZP_03589880.1| hypothetical protein Bsubs1_01223 [Bacillus subtilis subsp. subtilis str. 168] gi|221312356|ref|ZP_03594161.1| hypothetical protein BsubsN3_01226 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317289|ref|ZP_03598583.1| hypothetical protein BsubsJ_01228 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321553|ref|ZP_03602847.1| hypothetical protein BsubsS_01249 [Bacillus subtilis subsp. subtilis str. SMY] gi|81555893|sp|O31447|YBFG_BACSU RecName: Full=Uncharacterized protein ybfG gi|2632506|emb|CAB12014.1| putative pepdidoglycan binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|3599642|dbj|BAA33117.1| ybfG [Bacillus subtilis] Length = 732 Score = 40.6 bits (94), Expect = 0.45, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%) Query: 129 GLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEA-MNVPV-------DLRIRQLQVN 179 G + F E+AVK FQ GL G+V + ++A +++ D RIRQ+Q N Sbjct: 97 GFTGVFYEKTENAVKEFQKAAGLTTQDGIVTTLIMKALLDMSAFKLVSGGDSRIRQIQQN 156 Query: 180 LMR 182 L R Sbjct: 157 LNR 159 >gi|328472890|gb|EGF43738.1| hypothetical protein VP10329_19450 [Vibrio parahaemolyticus 10329] Length = 244 Score = 40.6 bits (94), Expect = 0.45, Method: Composition-based stats. Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 23/169 (13%) Query: 4 YLKINKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGI 63 Y +++++L+ + L +G+ LV P + + F ++ + Sbjct: 79 YERLSRLLFNIYT---LELGVDLVNNPNLLLTPIYSAQATLIGMATGLFTG--SKYSDYL 133 Query: 64 DSDIP--IISKETIAQTEKA--IAFY-----QDILSRGGWPELPIRPLHLGNSSVSVQRL 114 D +IP + ++ I T++A IA Y + + G+ L + G V V+ L Sbjct: 134 DQEIPDYVNARRIINGTDRAETIAGYAHDFERALKLAFGF-SLDRTTVRNGARGVDVREL 192 Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 + L ++ D F E++VK FQ ++GL G+V +T + Sbjct: 193 QLNLGLNAD--------GIFGNGTEASVKAFQNKYGLSNDGIVGKNTWK 233 >gi|94265641|ref|ZP_01289383.1| Peptidoglycan-binding domain 1 [delta proteobacterium MLMS-1] gi|93453851|gb|EAT04214.1| Peptidoglycan-binding domain 1 [delta proteobacterium MLMS-1] Length = 358 Score = 40.6 bits (94), Expect = 0.45, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 6/95 (6%) Query: 84 FYQDILSRGGW--PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 Y ++ S P P S+ ++ ++ L G + + E A Sbjct: 129 HYNNLQSNPALIKPTPDSDPSKP--SAKHIREAQQILTEIGY--DPGPIDGLYGRKTEGA 184 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 VK FQ L G++D TL + + V+ + +L Sbjct: 185 VKAFQGDAKLPQHGLIDQETLTFLRMVVEQKKIKL 219 >gi|206600022|ref|YP_002242096.1| gp39 [Mycobacterium phage Konstantine] gi|206287110|gb|ACI12455.1| gp39 [Mycobacterium phage Konstantine] Length = 321 Score = 40.6 bits (94), Expect = 0.46, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERL--IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L +G++ V ++++ + + F V++AV FQ R + G V Sbjct: 181 LRIGSTGPEVLKMQKGMNAVFKNYKAMPLDEDGIFGPMVQAAVIEFQQRSLISVDGEVGP 240 Query: 160 STLEAM 165 T + Sbjct: 241 QTKAKL 246 >gi|163792344|ref|ZP_02186321.1| hypothetical protein BAL199_15893 [alpha proteobacterium BAL199] gi|159182049|gb|EDP66558.1| hypothetical protein BAL199_15893 [alpha proteobacterium BAL199] Length = 552 Score = 40.6 bits (94), Expect = 0.46, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 9/81 (11%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P +P R S V R++ L+ G DP V +AV+ +Q G+ Sbjct: 439 PPVPKR-------SPLVGRIQSALLERGF-DPGPVDGVQ-GPQTVAAVQAYQRYRGVTAD 489 Query: 155 GMVDSSTLEAMNVPVDLRIRQ 175 G++D++ L ++ R R+ Sbjct: 490 GVIDAALLRSLKTAPSPRPRR 510 >gi|221235062|ref|YP_002517498.1| polar development protein podJ [Caulobacter crescentus NA1000] gi|29429226|sp|Q9ZG88|PODJ_CAUCR RecName: Full=Localization factor podJL; AltName: Full=Polar organelle development protein; Contains: RecName: Full=Localization factor podJS gi|251764811|sp|B8GXA0|PODJ_CAUCN RecName: Full=Localization factor podJL; AltName: Full=Polar organelle development protein; Contains: RecName: Full=Localization factor podJS gi|24110907|tpg|DAA00313.1| TPA_exp: polar organelle development protein [Caulobacter vibrioides] gi|220964234|gb|ACL95590.1| polar development protein podJ [Caulobacter crescentus NA1000] Length = 974 Score = 40.6 bits (94), Expect = 0.46, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 L G + + + A+ +Q GL P+G VD+ TL ++V Sbjct: 924 LSQLGYYQGPRDGVSS--PALRMAIAAYQRDQGLPPTGSVDAETLNRLSV 971 >gi|325829948|ref|ZP_08163406.1| ErfK/YbiS/YcfS/YnhG [Eggerthella sp. HGA1] gi|325488115|gb|EGC90552.1| ErfK/YbiS/YcfS/YnhG [Eggerthella sp. HGA1] Length = 552 Score = 40.6 bits (94), Expect = 0.46, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%) Query: 189 QKMGLRYVLVNIPAASLEAVEN-GKVGLRSTVIVGRVD--RQTPI 230 + G RYV V++ ++ G + S V+ G D TP Sbjct: 416 RDWGKRYVDVDLTEQHARFYDDEGSLAWESDVVTGTPDGEHDTPE 460 >gi|307105888|gb|EFN54135.1| hypothetical protein CHLNCDRAFT_58231 [Chlorella variabilis] Length = 651 Score = 40.6 bits (94), Expect = 0.46, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 24/57 (42%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 R L G+ V +L+ L G GLS F A++ +Q GL +G+ Sbjct: 59 RVLQQGSFGDDVMQLQAYLAEQGYFSSDDGLSGYFGDVTGQALQAWQRDQGLRVTGV 115 >gi|297158971|gb|ADI08683.1| hypothetical protein SBI_05563 [Streptomyces bingchenggensis BCW-1] Length = 395 Score = 40.6 bits (94), Expect = 0.46, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R L G V++L + L G + + A AV+ +Q GL +G V Sbjct: 153 RALKQGAEGADVRQLEKNLSALGY--TGFTVDDEYTAGTADAVREWQEDLGLAETGAV 208 >gi|167759667|ref|ZP_02431794.1| hypothetical protein CLOSCI_02026 [Clostridium scindens ATCC 35704] gi|167662698|gb|EDS06828.1| hypothetical protein CLOSCI_02026 [Clostridium scindens ATCC 35704] Length = 421 Score = 40.6 bits (94), Expect = 0.46, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V++++E+L +I+G P + ++V+ FQ GL + Sbjct: 337 PGYTLEIGSSGSKVRQMQEQLNVIAGSYPALPKINADGIYGPATAASVEKFQSIFGLPQT 396 Query: 155 GMVDSSTLE 163 G VD T Sbjct: 397 GTVDYRTWY 405 >gi|27381722|ref|NP_773251.1| amidase [Bradyrhizobium japonicum USDA 110] gi|27354891|dbj|BAC51876.1| amidase [Bradyrhizobium japonicum USDA 110] Length = 286 Score = 40.6 bits (94), Expect = 0.46, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 10/80 (12%) Query: 92 GGW----PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 G W P + L LG S V L++ L G L+ +DA V FQ Sbjct: 195 GHWVTPTPVVRGESLMLGTISDEVLSLQQALARYGY---GVPLTGKYDAATMEVVTAFQ- 250 Query: 148 RHGLDP--SGMVDSSTLEAM 165 RH G+ D STL + Sbjct: 251 RHFRPARLDGVADHSTLSTL 270 >gi|291482585|dbj|BAI83660.1| hypothetical protein BSNT_00388 [Bacillus subtilis subsp. natto BEST195] Length = 732 Score = 40.6 bits (94), Expect = 0.47, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%) Query: 129 GLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSSTLEA-MNVPV-------DLRIRQLQVN 179 G + F E+AVK FQ GL G+V + ++A +++ D RIRQ+Q N Sbjct: 97 GFTGVFYEKTENAVKEFQKAAGLTTQDGIVTTLIMKALLDMSAFKLVSGGDSRIRQIQQN 156 Query: 180 LMR 182 L R Sbjct: 157 LNR 159 >gi|307329028|ref|ZP_07608196.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306885390|gb|EFN16408.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 387 Score = 40.6 bits (94), Expect = 0.47, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + V L+ L +G + AF + V +FQ+R GL +G VD T A Sbjct: 211 GQADACVHELQSLLARAG---GELDIDGAFGPATQMRVVVFQLRSGLTANGSVDERTKRA 267 Query: 165 M 165 + Sbjct: 268 L 268 >gi|194219304|ref|XP_001498812.2| PREDICTED: similar to matrix metalloproteinase 25 preproprotein [Equus caballus] Length = 599 Score = 40.6 bits (94), Expect = 0.47, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P + + A+K+ Q GL +G++D T+ AM P Sbjct: 73 LTRYGYLPPPNPAQAQLQSPAKLRDAIKVMQRFAGLRETGVLDPETMAAMRKPRCSLPDV 132 Query: 176 LQVN-LMRIKK 185 L V L+R ++ Sbjct: 133 LGVAGLVRRRR 143 >gi|328770924|gb|EGF80965.1| hypothetical protein BATDEDRAFT_88038 [Batrachochytrium dendrobatidis JAM81] Length = 1001 Score = 40.6 bits (94), Expect = 0.48, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 R RL G P KG+ ++ + VK FQ GL+ + ++D T M+ R Sbjct: 299 RSRLTALGY-PPPKGVHLSDPNSLRKQVKHFQRTVGLEVTMVLDKRTRTKMDSNTTGR 355 >gi|228984111|ref|ZP_04144297.1| peptidoglycan binding domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775639|gb|EEM24019.1| peptidoglycan binding domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 739 Score = 40.6 bits (94), Expect = 0.48, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 12/110 (10%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L +G+S V + L +G S S ++A VES VK FQ L G+ + ST Sbjct: 221 LKVGSSGRFVTLFQYALYFNG--HDSGSFSTTYNANVESTVKKFQGFTLLPVDGVANKST 278 Query: 162 -LEAM--NVPVDLRIRQL----QVNLMRIKKLLEQKMGL--RYVLVNIPA 202 L A+ D + + +V L R K L RY LVN+P Sbjct: 279 WLSALVSTGDPDRKGKACDCITEVTLERGKALKTAGYETVGRY-LVNVPG 327 >gi|153930828|ref|YP_001385112.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 19397] gi|153935450|ref|YP_001388581.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. Hall] gi|152926872|gb|ABS32372.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 19397] gi|152931364|gb|ABS36863.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. Hall] Length = 236 Score = 40.6 bits (94), Expect = 0.48, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + G +V+ ++ +L G G+ F AVK FQ L G++ Sbjct: 169 KYNPGRFDANVKLIQSKLQNIGYSVGKYGVDGYFGDGTLLAVKCFQRDCNLMIDGIIGVD 228 Query: 161 TLE 163 T + Sbjct: 229 TWK 231 >gi|166366985|ref|YP_001659258.1| ErfK/YbiS/YcfS/YnhG family protein [Microcystis aeruginosa NIES-843] gi|166089358|dbj|BAG04066.1| ErfK/YbiS/YcfS/YnhG family protein [Microcystis aeruginosa NIES-843] Length = 166 Score = 40.6 bits (94), Expect = 0.48, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 48/153 (31%), Gaps = 48/153 (31%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDM 255 +L+N+ + + K+ V +GR +TP R+ ++ P W P + + Sbjct: 41 LLLNLKKRRVFVYQGQKIIASYPVAIGRRGWETPTGQFRVIHMVREPVWEHPFT---GQL 97 Query: 256 MALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF 315 + + +P + W + NF Sbjct: 98 VPSGKNNPLGARWIGF----------------WT--DGANF------------------- 120 Query: 316 YSRNNTYMHDTPEPILFNNVVRFETSGCVRVRN 348 H TP+ L R + GCVR+R+ Sbjct: 121 -----IGFHGTPQENLIG---RAVSHGCVRMRD 145 >gi|90419110|ref|ZP_01227021.1| peptidoglycan-binding protein [Aurantimonas manganoxydans SI85-9A1] gi|90337190|gb|EAS50895.1| peptidoglycan-binding protein [Aurantimonas manganoxydans SI85-9A1] Length = 249 Score = 40.6 bits (94), Expect = 0.49, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 22/110 (20%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS--------S 160 V+ ++ L +G + ++A++ FQ RHGL G Sbjct: 80 PLVREVQTALAEAGIYEAPVDGRPG--PATDTAIRTFQSRHGLTTDGAATPLLLSQIRQV 137 Query: 161 TLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 T +A N R + R++ + + N+P S +A ++ Sbjct: 138 TAQAPN--PSPRPNAIASIEERMRGIPQ----------NVPDNSTDAPDD 175 >gi|158423847|ref|YP_001525139.1| lytic murein transglycosylase [Azorhizobium caulinodans ORS 571] gi|158330736|dbj|BAF88221.1| lytic murein transglycosylase [Azorhizobium caulinodans ORS 571] Length = 421 Score = 40.6 bits (94), Expect = 0.50, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 3/58 (5%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-SGMVDSSTLEAM 165 +Q +++RL G + G AVK FQ R GL P G L A+ Sbjct: 362 AELQEIQQRLTRLGF--DTGGTDGRVGNDTMRAVKAFQQRAGLTPADGYPGLQVLTAL 417 >gi|302381169|ref|YP_003816992.1| peptidoglycan-binding protein [Brevundimonas subvibrioides ATCC 15264] gi|302191797|gb|ADK99368.1| Peptidoglycan-binding domain 1 protein [Brevundimonas subvibrioides ATCC 15264] Length = 269 Score = 40.6 bits (94), Expect = 0.50, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V+ L +RL+++ DP E+A+K +Q L P ++ T +A+ Sbjct: 2 DVRAL-QRLLLAQGFDPGPIDGQI-GKKTEAALKAWQAARRLLPDAVIGPRTRDAL 55 >gi|160915933|ref|ZP_02078141.1| hypothetical protein EUBDOL_01956 [Eubacterium dolichum DSM 3991] gi|158432409|gb|EDP10698.1| hypothetical protein EUBDOL_01956 [Eubacterium dolichum DSM 3991] Length = 232 Score = 40.6 bits (94), Expect = 0.50, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L +G+ V V L++ L G + L AF +A+ FQ + L G+ + Sbjct: 154 TLRIGSRGVYVLVLQDALNALGY--NTYTLDGAFGNNTRNALISFQRNNNLRADGIAGCN 211 Query: 161 TLEAM 165 T + Sbjct: 212 TWTRL 216 >gi|149756826|ref|XP_001493989.1| PREDICTED: matrix metallopeptidase 17 (membrane-inserted) [Equus caballus] Length = 579 Score = 40.6 bits (94), Expect = 0.50, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 2/75 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 31 LSRFGYLPPADPTTGQLQTQEELSKAIAAMQRFGGLEATGILDEATLALMKTPRCSLPDL 90 Query: 176 LQVNLMRIKKLLEQK 190 V L R ++ Sbjct: 91 PAVILSRRRRQAPAP 105 >gi|186684696|ref|YP_001867892.1| peptidoglycan binding domain-containing protein [Nostoc punctiforme PCC 73102] gi|186467148|gb|ACC82949.1| Peptidoglycan-binding domain 1 protein [Nostoc punctiforme PCC 73102] Length = 234 Score = 40.6 bits (94), Expect = 0.50, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 24/131 (18%) Query: 36 LDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWP 95 +D+ +N ++ D+F + + I ++ + Sbjct: 125 IDDGLNLHNPNLWKDKFPIIQSELTGLTQPGIRAVNSPRLLFL----------------- 167 Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP-S 154 PL G+ ++ ++E+LI G G F +AV FQ + LDP Sbjct: 168 ---TTPLMKGD---DIKVVQEKLIGKGFDLGITGADGFFGQATANAVIKFQDQEDLDPVD 221 Query: 155 GMVDSSTLEAM 165 G+V T +A+ Sbjct: 222 GIVGDKTKKAL 232 >gi|330822714|ref|YP_004386017.1| peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans K601] gi|329308086|gb|AEB82501.1| Peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans K601] Length = 346 Score = 40.6 bits (94), Expect = 0.51, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ERL G + S A++ FQ + GL +G +D++T A+ Sbjct: 297 ERLNALGYNVGTPDGSAG--PKTARALREFQQQQGLPVTGRLDAATAGAL 344 >gi|319760794|ref|YP_004124731.1| peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans BC] gi|317115355|gb|ADU97843.1| Peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans BC] Length = 346 Score = 40.6 bits (94), Expect = 0.51, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ERL G + S A++ FQ + GL +G +D++T A+ Sbjct: 297 ERLNALGYNVGTPDGSAG--PKTARALREFQQQQGLPVTGRLDAATAGAL 344 >gi|228968274|ref|ZP_04129272.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar sotto str. T04001] gi|228791447|gb|EEM39051.1| Carboxyl-terminal protease [Bacillus thuringiensis serovar sotto str. T04001] Length = 481 Score = 40.6 bits (94), Expect = 0.51, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEATGQLDK 462 Query: 160 STLEAM 165 T EA+ Sbjct: 463 KTAEAI 468 >gi|325292881|ref|YP_004278745.1| Lysozyme [Agrobacterium sp. H13-3] gi|325060734|gb|ADY64425.1| Lysozyme [Agrobacterium sp. H13-3] Length = 307 Score = 40.6 bits (94), Expect = 0.52, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDSSTLEAM 165 V+ +E L +G L+P A ++AV +Q H L G++ +T+ + Sbjct: 182 DPVVKEAQELLTTAG-LNPGAIDGWM-GAKTKAAVIAYQKAHPHLIADGIIGPATIAQL 238 >gi|83645387|ref|YP_433822.1| membrane-bound lytic murein transglycosylase B [Hahella chejuensis KCTC 2396] gi|83633430|gb|ABC29397.1| Membrane-bound lytic murein transglycosylase B [Hahella chejuensis KCTC 2396] Length = 404 Score = 40.6 bits (94), Expect = 0.52, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 8/77 (10%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 PELP PL +V L+++L G + A++ FQ + G+ Sbjct: 334 PELPRLPL------TAVADLQQKLTDKGF--DAGKSDGIMGPATRDAIRAFQEKQGMIAD 385 Query: 155 GMVDSSTLEAMNVPVDL 171 G + L+A+++ + Sbjct: 386 GYPNPEVLQALDIKIQS 402 >gi|21232639|ref|NP_638556.1| hypothetical protein XCC3210 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767252|ref|YP_242014.1| hypothetical protein XC_0920 [Xanthomonas campestris pv. campestris str. 8004] gi|188990367|ref|YP_001902377.1| conserved exported protein [Xanthomonas campestris pv. campestris str. B100] gi|21114444|gb|AAM42480.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572584|gb|AAY47994.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] gi|167732127|emb|CAP50319.1| conserved exported protein [Xanthomonas campestris pv. campestris] Length = 324 Score = 40.6 bits (94), Expect = 0.52, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 PG N + I+ + Y +H TPEP +V + E+ GCVR+ N Sbjct: 261 PPGPNNPVGRVWIDLSKPH--YGLHGTPEPG---HVGKTESHGCVRLTNWD 306 >gi|323490202|ref|ZP_08095420.1| carboxy-terminal processing protease [Planococcus donghaensis MPA1U2] gi|323396131|gb|EGA88959.1| carboxy-terminal processing protease [Planococcus donghaensis MPA1U2] Length = 507 Score = 40.6 bits (94), Expect = 0.53, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS-S 160 L G S V+ + L G + F+ + AVK FQ L+ +G++ S Sbjct: 405 LKDGTISEQVKTAEQMLEALGY--DVGEVDGVFEEQMTEAVKAFQEEKELEATGVLTEDS 462 Query: 161 TLEAM 165 T M Sbjct: 463 TFAVM 467 >gi|284054148|ref|ZP_06384358.1| hypothetical protein AplaP_22106 [Arthrospira platensis str. Paraca] gi|291567772|dbj|BAI90044.1| peptidoglycan-binding domain 1 protein [Arthrospira platensis NIES-39] Length = 253 Score = 40.6 bits (94), Expect = 0.53, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 1/53 (1%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 LR L G P S DA + ++ FQ L G+V T M Sbjct: 11 ELRFVLYGLGYGVPVNNDSPT-DAIAQQGIRAFQHDRNLVVDGIVGDKTQAEM 62 Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V L L I +P + + +AVK FQ R+ L +G+ D+ + + Sbjct: 64 AIVSSLHNHLNIVVRPNPPLPGNQFYGPKTTAAVKDFQKRYDLPVTGVADTYVRDKL 120 >gi|212638914|ref|YP_002315434.1| germination-specific spore cortex-lytic enzyme [Anoxybacillus flavithermus WK1] gi|212560394|gb|ACJ33449.1| Germination-specific spore cortex-lytic enzyme [Anoxybacillus flavithermus WK1] Length = 305 Score = 40.6 bits (94), Expect = 0.53, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + + G V L+ RL G + F A++ FQ + L G Sbjct: 46 AFSKQVIQRGAVGDDVIELQARLQYLGFYRG--KIDGVFSWRTYWALRNFQYKFKLPVDG 103 Query: 156 MVDSSTLEAM 165 + +T + + Sbjct: 104 LAGEATKQKL 113 >gi|332711167|ref|ZP_08431100.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332349981|gb|EGJ29588.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 126 Score = 40.6 bits (94), Expect = 0.53, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 11/73 (15%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG---------LD 152 L G + +V+ L++ L +D + F + E AV+ FQ + L Sbjct: 33 LKKGTAGEAVRFLQQLLNC--YMDYYLVIDGQFGSQTEQAVRDFQSDYNYQGKSNPDYLI 90 Query: 153 PSGMVDSSTLEAM 165 G+V T A+ Sbjct: 91 VDGIVGKETYRAI 103 >gi|327277063|ref|XP_003223285.1| PREDICTED: matrix metalloproteinase-19-like [Anolis carolinensis] Length = 475 Score = 40.6 bits (94), Expect = 0.53, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 7/69 (10%) Query: 107 SSVSVQRLRER-----LIISGDL-DPSKGLSVAF-DAYVESAVKLFQMRHGLDPSGMVDS 159 +V RL E+ L+ G L P + S F + +E A++ FQ+ GL +G VD Sbjct: 20 KGAAVTRLEEKEALDYLLQFGYLQKPLEQFSNNFTEEEIEEALRSFQLASGLPVTGRVDV 79 Query: 160 STLEAMNVP 168 +TL M P Sbjct: 80 ATLSQMRQP 88 >gi|260905995|ref|ZP_05914317.1| TrwC relaxase [Brevibacterium linens BL2] Length = 1152 Score = 40.6 bits (94), Expect = 0.53, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 57/171 (33%), Gaps = 38/171 (22%) Query: 56 LARVDMGIDSDIPIISKETIAQTEKAIAF--YQDILSRGGWPELPIRPL----------H 103 A + + + ++ +A+ + +A Y + RG +P + Sbjct: 108 AAALHPEVSDALDAAQQDAVAEIRRWLAQHAYTRVGPRGQQEIIPAESVQTVAVVHRTSR 167 Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYV----ESAVKLF---------QM--- 147 G+ V G P+ G A D V + A++ Q+ Sbjct: 168 AGDPHRHVH------FQIGTRVPAAGKWRALDTAVLFKQQGAIRALGAAVIAANPQLAAT 221 Query: 148 --RHGLDPSGMVDSST-LEAMNVPVDLRIRQLQVNLMRIK-KLLEQKMGLR 194 RHGL + T LEA N + R Q++ NL R++ + G Sbjct: 222 LDRHGLTLDSVTGEVTELEAFNPVMSKRAHQVERNLKRLEAEWEAAHPGEE 272 >gi|23099261|ref|NP_692727.1| sporulation specific N-acetylmuramoyl-L-alanine amidase [Oceanobacillus iheyensis HTE831] gi|25453277|sp|P59105|SLEB_OCEIH RecName: Full=Spore cortex-lytic enzyme; Short=SCLE; Flags: Precursor gi|22777490|dbj|BAC13762.1| sporulation specific N-acetylmuramoyl-L-alanine amidase (spore cortex-lytic enzyme) [Oceanobacillus iheyensis HTE831] Length = 276 Score = 40.6 bits (94), Expect = 0.53, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 + G V L+ RL G + + F A++ FQ G++ G+ +T Sbjct: 38 IQQGAVGEDVIELQARLQYLGFYNG--KIDGVFGWGTYWALRNFQYEFGMEIDGLAGQTT 95 Query: 162 LEAM 165 + + Sbjct: 96 KDKL 99 >gi|310825690|ref|YP_003958047.1| YkuG [Eubacterium limosum KIST612] gi|308737424|gb|ADO35084.1| YkuG [Eubacterium limosum KIST612] Length = 712 Score = 40.6 bits (94), Expect = 0.55, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V L+ L ++G S + FD VE+AV FQ L+ G V ST A+ V Sbjct: 218 ALVYLLQYMLYVNGFNPGS--FNGIFDTGVENAVINFQSLMALEADGWVGLSTWAALLVS 275 >gi|15895879|ref|NP_349228.1| cell wall hydrolase [Clostridium acetobutylicum ATCC 824] gi|15025646|gb|AAK80568.1|AE007759_6 Cell wall hydrolase (autolysin), family 25 of glycosyl hydrolases; peptodoglycan-binding domain [Clostridium acetobutylicum ATCC 824] gi|325510031|gb|ADZ21667.1| Cell wall hydrolase (autolysin), family 25 of glycosyl hydrolase [Clostridium acetobutylicum EA 2018] Length = 325 Score = 40.6 bits (94), Expect = 0.55, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 19/37 (51%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L + E+ VK++Q HGL+ G+V + T + Sbjct: 284 KLDGVYGPQTEANVKVWQSNHGLNADGIVGNDTWNKL 320 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 S +V+ ++++L L + A +A+K FQ GL G+ T+ A Sbjct: 199 SDTVKIIQQQLNTL--LKKGLIVDGISGASTTAAIKEFQGAMGLAQDGIWGPKTVAA 253 >gi|297481953|ref|XP_002692352.1| PREDICTED: matrix metallopeptidase 24 (membrane-inserted) [Bos taurus] gi|296481308|gb|DAA23423.1| matrix metallopeptidase 24 (membrane-inserted) [Bos taurus] Length = 596 Score = 40.6 bits (94), Expect = 0.55, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 RL L G L P S A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 31 RLANWLKSYGYLLPYDSRSSALHSGKALQSAVATMQQFYGIPVTGVLDQTTIEWMKKP 88 >gi|209526749|ref|ZP_03275271.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] gi|209492793|gb|EDZ93126.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] Length = 253 Score = 40.6 bits (94), Expect = 0.57, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 1/53 (1%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 LR L G P S DA + ++ FQ L G+V T M Sbjct: 11 ELRFVLYGLGYGVPVNNDSPT-DAIAQQGIRAFQHDRNLVVDGIVGDKTQAEM 62 Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V L L I +P + + +AVK FQ R+ L +G+ D+ + + Sbjct: 64 AIVSSLHNHLNIVVRPNPPLPGNQFYGPKTTAAVKDFQKRYDLPVTGVADTYVRDKL 120 >gi|92117827|ref|YP_577556.1| lytic murein transglycosylase [Nitrobacter hamburgensis X14] gi|91800721|gb|ABE63096.1| Lytic murein transglycosylase [Nitrobacter hamburgensis X14] Length = 407 Score = 40.6 bits (94), Expect = 0.57, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 VQ ++ RL +G + G AVK FQ R GL G L + Sbjct: 349 AEVQEVQTRLTSAGF--DTGGTDGRVGNDTMKAVKDFQTRVGLPADGYAGLEVLARL 403 >gi|49474987|ref|YP_033028.1| peptidoglycan-binding protein [Bartonella henselae str. Houston-1] gi|49237792|emb|CAF26986.1| Peptidoglycan-binding protein [Bartonella henselae str. Houston-1] Length = 418 Score = 40.6 bits (94), Expect = 0.57, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 9/92 (9%) Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 +A IA + ++ W P PL + L+ RL G + Sbjct: 333 AVALLANRIAGHSGLVQ--DWQR-PFPPLTFYER----KELQSRLAALGYYKGE--MDGI 383 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 A+K FQ+RHGL +G L + Sbjct: 384 IGTASRKALKAFQLRHGLTANGYPTPEVLSLL 415 >gi|325661782|ref|ZP_08150405.1| hypothetical protein HMPREF0490_01140 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472035|gb|EGC75250.1| hypothetical protein HMPREF0490_01140 [Lachnospiraceae bacterium 4_1_37FAA] Length = 101 Score = 40.2 bits (93), Expect = 0.57, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G+S V++++E L +I+G P + + ++VK FQ GL + Sbjct: 17 PGYVLENGSSGNKVRQMQEELNVIAGAYPAIPKITVDGIYGPATAASVKKFQSVFGLPAT 76 Query: 155 GMVDSSTLE 163 G VD T Sbjct: 77 GTVDYRTWY 85 >gi|311270531|ref|XP_001925199.2| PREDICTED: LOW QUALITY PROTEIN: matrix metalloproteinase-17 [Sus scrofa] Length = 592 Score = 40.2 bits (93), Expect = 0.57, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 21/114 (18%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP------- 168 L G L P + + A+ Q GL+ +G++D +TL M P Sbjct: 51 LSRFGYLPPPDPATGQLQTQEELAKAIAAMQRFGGLEATGVLDEATLALMKTPRCSLPDL 110 Query: 169 ---VDLRIRQLQV--------NL-MRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 R R+ + NL R++ R + + +L+ + Sbjct: 111 PASASARRRRQALAPTKWNKRNLSWRVRTFPRDSPLGRDTVRALMHYALKVWSD 164 >gi|294812816|ref|ZP_06771459.1| Membrane protein [Streptomyces clavuligerus ATCC 27064] gi|294325415|gb|EFG07058.1| Membrane protein [Streptomyces clavuligerus ATCC 27064] Length = 542 Score = 40.2 bits (93), Expect = 0.58, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 21/69 (30%), Gaps = 6/69 (8%) Query: 102 LHLGNSSVSVQRLRERLIISGD-----LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 G S SV RL ERL G P A D A + Q G + G Sbjct: 411 FRPGAVSPSVTRLGERLRQLGYGRHYTSGPGPDWGEA-DRRNVEAFQRAQGWSGTEADGY 469 Query: 157 VDSSTLEAM 165 T + Sbjct: 470 PGPHTWRRL 478 >gi|288942661|ref|YP_003444901.1| ErfK/YbiS/YcfS/YnhG family protein [Allochromatium vinosum DSM 180] gi|288898033|gb|ADC63869.1| ErfK/YbiS/YcfS/YnhG family protein [Allochromatium vinosum DSM 180] Length = 321 Score = 40.2 bits (93), Expect = 0.58, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 46/161 (28%), Gaps = 43/161 (26%) Query: 189 QKMGLRYVLVNIPAASLEAV--ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVI 246 + + ++VN L + + VG+ TP+ + + +P W Sbjct: 101 PNVPHQGIVVNRAEKRLYYYPPNSPNEVRIYAITVGKDAMATPLGNFDVIEKRKDPTWTP 160 Query: 247 PRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKIN 306 +R + KG + PG N Sbjct: 161 ---------GPQVRANHA-----------AKGHILPPTV---------------PPGPDN 185 Query: 307 AMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 + + + + Y +H T +P V + GC+R+ Sbjct: 186 PLGRFAMRLSNPD--YLIHGTNQPWGMGLEV---SGGCIRM 221 >gi|237735561|ref|ZP_04566042.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229381306|gb|EEO31397.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 44 Score = 40.2 bits (93), Expect = 0.58, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 17/32 (53%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 F + A+ +FQ GL G+V S+T + + Sbjct: 7 FGKKTKEAIIVFQRNRGLVQDGVVGSNTWDWL 38 >gi|239941793|ref|ZP_04693730.1| peptidoglycan binding domain-containing protein [Streptomyces roseosporus NRRL 15998] gi|239988253|ref|ZP_04708917.1| peptidoglycan binding domain-containing protein [Streptomyces roseosporus NRRL 11379] Length = 430 Score = 40.2 bits (93), Expect = 0.58, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 10/140 (7%) Query: 21 PMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEK 80 P S++ P+ VL + + + R D ++ +G S + + +T + Sbjct: 59 PPAPSVLTAPVQRKVLSDTVITRGKVAASQRLD--VSGEGVGEKSSGRSVVTKAPVRTGQ 116 Query: 81 AIAFYQDILSRGGWP------ELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + Q +L G P E+P R L G++ V +L++ L G + Sbjct: 117 PLRMGQLLLEISGRPVFVLRGEVPAYRDLGPGSTGQDVSQLQQALAGLGY-GSGNDRAGT 175 Query: 134 FDAYVESAVKLFQMRHGLDP 153 F E+AV F HG P Sbjct: 176 FGPGTEAAVTRFYRAHGHAP 195 >gi|238923688|ref|YP_002937204.1| hypothetical protein EUBREC_1310 [Eubacterium rectale ATCC 33656] gi|238875363|gb|ACR75070.1| Hypothetical protein EUBREC_1310 [Eubacterium rectale ATCC 33656] Length = 128 Score = 40.2 bits (93), Expect = 0.58, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHG 150 WP I +G+S +V +++++L P+ + ++AV+ FQ G Sbjct: 43 WPGYNIG---IGSSGQNVYQIQKQLARIAKAYPAIPSIVPDGIYGPKTKAAVEKFQAVFG 99 Query: 151 LDPSGMVDSSTLEAM-NVPVD-LRIRQLQ 177 L SG+VD +T + N+ V RI +L Sbjct: 100 LPVSGVVDYNTWYEISNIYVAVTRIAELA 128 >gi|213612519|ref|ZP_03370345.1| hypothetical protein SentesTyp_08467 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 166 Score = 40.2 bits (93), Expect = 0.59, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++N+ L + GK + +G++ D TP + + I+ Sbjct: 92 LQTLLP-DAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKR 150 Query: 240 FNPYWVIPRSI 250 NP W +I Sbjct: 151 ANPTWTPTTNI 161 >gi|302385683|ref|YP_003821505.1| Peptidoglycan-binding domain 1 protein [Clostridium saccharolyticum WM1] gi|302196311|gb|ADL03882.1| Peptidoglycan-binding domain 1 protein [Clostridium saccharolyticum WM1] Length = 421 Score = 40.2 bits (93), Expect = 0.59, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 6/73 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHG 150 WP L +G S V++++E+L I + P F AV+ FQ G Sbjct: 336 WPGF---NLTVGASGDKVRQVQEQLDTIATVYTAIPRIRADGIFGPATAEAVRQFQSIFG 392 Query: 151 LDPSGMVDSSTLE 163 L +G++D +T Sbjct: 393 LPVTGVIDFATWY 405 >gi|126335321|ref|XP_001371136.1| PREDICTED: similar to Purinergic receptor P2Y, G-protein coupled, 5 [Monodelphis domestica] Length = 569 Score = 40.2 bits (93), Expect = 0.59, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 5/94 (5%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDP 153 +P R L S+ V + L G L P + + A+K+ Q GL Sbjct: 22 PVPARALEP--SAQDVSLSVDWLTRYGYLPPPHPAQAQLQSPEQLRDAIKIMQRFAGLKE 79 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVN-LMRIKKL 186 +G++D +TL M P L V L+R ++ Sbjct: 80 TGLMDEATLSTMKKPRCSLPDVLGVAGLVRRRRY 113 >gi|118580186|ref|YP_901436.1| peptidoglycan binding domain-containing protein [Pelobacter propionicus DSM 2379] gi|118502896|gb|ABK99378.1| Peptidoglycan-binding domain 1 protein [Pelobacter propionicus DSM 2379] Length = 564 Score = 40.2 bits (93), Expect = 0.59, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G + L+ L +G + + + SAV+ FQ G+ + T Sbjct: 488 LVPGERRKELHTLQRMLKQAGCYRQA--IDGVYSKATISAVRRFQRSQGIPTNDSGGELT 545 Query: 162 LEAM 165 L + Sbjct: 546 LALL 549 >gi|258511676|ref|YP_003185110.1| spore cortex-lytic enzyme [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478402|gb|ACV58721.1| spore cortex-lytic enzyme [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 267 Score = 40.2 bits (93), Expect = 0.60, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 R L G++ V L+ RL + G + F AV+ FQ GL + Sbjct: 31 QAFTARNLIYGSTGYDVDELQGRLHLLGYYWG--RIDGIFGWKTYWAVRTFQYNFGLPVT 88 Query: 155 GMVDSST 161 G VD T Sbjct: 89 GEVDMRT 95 >gi|296444538|ref|ZP_06886502.1| lytic murein transglycosylase [Methylosinus trichosporium OB3b] gi|296257806|gb|EFH04869.1| lytic murein transglycosylase [Methylosinus trichosporium OB3b] Length = 392 Score = 40.2 bits (93), Expect = 0.60, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 7/75 (9%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 +G WP G S + ++ L G + A+ FQ R G Sbjct: 322 QGAWPTDD-----PGLSRAERREVQALLSRHGYEVGEPDGVIG--TRTMQAIADFQGRAG 374 Query: 151 LDPSGMVDSSTLEAM 165 + G TL A+ Sbjct: 375 MRADGRAGRKTLNAL 389 >gi|229823247|ref|ZP_04449316.1| hypothetical protein GCWU000282_00545 [Catonella morbi ATCC 51271] gi|229787413|gb|EEP23527.1| hypothetical protein GCWU000282_00545 [Catonella morbi ATCC 51271] Length = 459 Score = 40.2 bits (93), Expect = 0.61, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 20/40 (50%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQT 228 +G YV V+I ++ ++ K L + V+ G+ +T Sbjct: 329 DDIGPTYVEVDIANQTMFLYKDHKKILEAPVVTGQPAAET 368 >gi|170756455|ref|YP_001780389.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum B1 str. Okra] gi|169121667|gb|ACA45503.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum B1 str. Okra] Length = 234 Score = 40.2 bits (93), Expect = 0.61, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 + + +V+ ++ +L G G++ F A+K FQ L G++ + Sbjct: 167 KYNPNSFDANVKAIQNKLQNIGYSVGKSGVNGYFGDGTLLAIKCFQRDCNLMIDGVIGVN 226 Query: 161 TLE 163 T Sbjct: 227 TWN 229 >gi|153004608|ref|YP_001378933.1| peptidoglycan binding domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152028181|gb|ABS25949.1| Peptidoglycan-binding domain 1 protein [Anaeromyxobacter sp. Fw109-5] Length = 146 Score = 40.2 bits (93), Expect = 0.61, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 9/80 (11%) Query: 95 PELPIRP---LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 P +P P L G +V+ L+ L G L + + D A++ FQ L Sbjct: 62 PRIPASPEALLAPG----AVKDLQRALTDRGLLGTHRAGEL--DDATSRAIRRFQESEQL 115 Query: 152 DPSGMVDSSTLEAMNVPVDL 171 +G D TL+ + + D Sbjct: 116 AATGFPDRETLQRLGLDPDR 135 >gi|291525690|emb|CBK91277.1| Putative peptidoglycan-binding domain-containing protein [Eubacterium rectale DSM 17629] Length = 420 Score = 40.2 bits (93), Expect = 0.61, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHG 150 WP I +G+S +V +++++L P+ + ++AV+ FQ G Sbjct: 335 WPGYNIG---IGSSGQNVYQIQKQLARIAKAYPAIPSIVPDGIYGPKTKAAVEKFQAVFG 391 Query: 151 LDPSGMVDSSTLEAM-NVPVD-LRIRQLQ 177 L SG+VD +T + N+ V RI +L Sbjct: 392 LPVSGVVDYNTWYEISNIYVAVTRIAELA 420 >gi|218290950|ref|ZP_03495007.1| spore cortex-lytic enzyme [Alicyclobacillus acidocaldarius LAA1] gi|218239115|gb|EED06318.1| spore cortex-lytic enzyme [Alicyclobacillus acidocaldarius LAA1] Length = 267 Score = 40.2 bits (93), Expect = 0.61, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 R L G++ V L+ RL + G + F AV+ FQ GL + Sbjct: 31 QAFTARNLIYGSTGYDVDELQGRLHLLGYYWG--RIDGIFGWKTYWAVRTFQYNFGLPVT 88 Query: 155 GMVDSST 161 G VD T Sbjct: 89 GEVDMRT 95 >gi|62858237|ref|NP_001015992.1| matrix metallopeptidase 16 [Xenopus (Silurana) tropicalis] gi|89271306|emb|CAJ82988.1| matrix metalloproteinase 16 (membrane-inserted) [Xenopus (Silurana) tropicalis] Length = 607 Score = 40.2 bits (93), Expect = 0.61, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P+ ++SA+ Q +G++ +G +D +T++ M P Sbjct: 45 LQKYGYLPPTDPRMSVLRSAETMQSAIAAMQQFYGINATGKIDKNTIDWMKKP 97 >gi|291445240|ref|ZP_06584630.1| peptidoglycan-binding domain 1 protein [Streptomyces roseosporus NRRL 15998] gi|291348187|gb|EFE75091.1| peptidoglycan-binding domain 1 protein [Streptomyces roseosporus NRRL 15998] Length = 486 Score = 40.2 bits (93), Expect = 0.62, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 10/140 (7%) Query: 21 PMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEK 80 P S++ P+ VL + + + R D ++ +G S + + +T + Sbjct: 115 PPAPSVLTAPVQRKVLSDTVITRGKVAASQRLD--VSGEGVGEKSSGRSVVTKAPVRTGQ 172 Query: 81 AIAFYQDILSRGGWP------ELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 + Q +L G P E+P R L G++ V +L++ L G + Sbjct: 173 PLRMGQLLLEISGRPVFVLRGEVPAYRDLGPGSTGQDVSQLQQALAGLGY-GSGNDRAGT 231 Query: 134 FDAYVESAVKLFQMRHGLDP 153 F E+AV F HG P Sbjct: 232 FGPGTEAAVTRFYRAHGHAP 251 >gi|153941218|ref|YP_001390250.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum F str. Langeland] gi|152937114|gb|ABS42612.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum F str. Langeland] gi|295318345|gb|ADF98722.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum F str. 230613] Length = 125 Score = 40.2 bits (93), Expect = 0.62, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 21/48 (43%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++++N A +L ++ V V VG+ TP +I NP Sbjct: 17 HIIINTQAHTLTLFKDNNVYKTYKVAVGKPSTPTPKGTFKIINRAINP 64 >gi|255521659|ref|ZP_05388896.1| carboxy-terminal processing proteinase [Listeria monocytogenes FSL J1-175] Length = 323 Score = 40.2 bits (93), Expect = 0.63, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 235 STKVYKNGDFGDDVKTIETLLKALDY--NVGKVDGLYDTDTEYAVQRFQAANKLDVTGIM 292 Query: 158 DSSTLEAM 165 T + + Sbjct: 293 TGVTTDKL 300 >gi|254852755|ref|ZP_05242103.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|300763836|ref|ZP_07073833.1| carboxyl-terminal protease [Listeria monocytogenes FSL N1-017] gi|258606083|gb|EEW18691.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|300515572|gb|EFK42622.1| carboxyl-terminal protease [Listeria monocytogenes FSL N1-017] Length = 496 Score = 40.2 bits (93), Expect = 0.63, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 408 STKVYKNGDFGDDVKTIETLLKALDY--NVGKVDGLYDTDTEYAVQRFQAANKLDVTGIM 465 Query: 158 DSSTLEAM 165 T + + Sbjct: 466 TGVTTDKL 473 >gi|226224454|ref|YP_002758561.1| carboxy-terminal processing proteinase [Listeria monocytogenes Clip81459] gi|254826107|ref|ZP_05231108.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254931979|ref|ZP_05265338.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|254992637|ref|ZP_05274827.1| carboxy-terminal processing proteinase [Listeria monocytogenes FSL J2-064] gi|225876916|emb|CAS05625.1| Putative carboxy-terminal processing proteinase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293583530|gb|EFF95562.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293595347|gb|EFG03108.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|328466201|gb|EGF37358.1| carboxy-terminal processing proteinase [Listeria monocytogenes 1816] gi|328473572|gb|EGF44409.1| carboxy-terminal processing proteinase [Listeria monocytogenes 220] gi|332312292|gb|EGJ25387.1| Carboxy-terminal processing protease [Listeria monocytogenes str. Scott A] Length = 496 Score = 40.2 bits (93), Expect = 0.63, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 408 STKVYKNGDFGDDVKTIETLLKALDY--NVGKVDGLYDTDTEYAVQRFQAANKLDVTGIM 465 Query: 158 DSSTLEAM 165 T + + Sbjct: 466 TGVTTDKL 473 >gi|46908083|ref|YP_014472.1| carboxypeptidase family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47093234|ref|ZP_00231006.1| carboxypeptidase family protein [Listeria monocytogenes str. 4b H7858] gi|46881353|gb|AAT04649.1| carboxypeptidase family protein [Listeria monocytogenes serotype 4b str. F2365] gi|47018366|gb|EAL09127.1| carboxypeptidase family protein [Listeria monocytogenes str. 4b H7858] Length = 468 Score = 40.2 bits (93), Expect = 0.63, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 380 STKVYKNGDFGDDVKTIETLLKALDY--NVGKVDGLYDTDTEYAVQRFQAANKLDVTGIM 437 Query: 158 DSSTLEAM 165 T + + Sbjct: 438 TGVTTDKL 445 >gi|290957976|ref|YP_003489158.1| peptidoglycan binding protein [Streptomyces scabiei 87.22] gi|260647502|emb|CBG70607.1| putative peptidoglycan binding protein [Streptomyces scabiei 87.22] Length = 311 Score = 40.2 bits (93), Expect = 0.63, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 52/149 (34%), Gaps = 29/149 (19%) Query: 95 PELPIRPL-HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P + L G+ + V+ L+ RL L G + +D AV FQ + GL Sbjct: 98 PTVAPTVLWAQGDEGLDVRELQARLRQIAWL--FTGPTGTYDDLTVQAVSGFQGKRGLPR 155 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNLMRI--KKLL------------EQKMGLRYVLVN 199 +G DS T + +++ R K L + + R + ++ Sbjct: 156 TGKTDSVTWARL------------LSMTREPGKWDLYAYGGQPAASPDPRCLTGRALCIS 203 Query: 200 IPAASLEAVENGKVGLRSTVIVGRVDRQT 228 + +L + +G+ V G T Sbjct: 204 KTSRTLRWMVDGRTLTTVEVRFGSAYTPT 232 >gi|188586802|ref|YP_001918347.1| carboxyl-terminal protease [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351489|gb|ACB85759.1| carboxyl-terminal protease [Natranaerobius thermophilus JW/NM-WN-LF] Length = 476 Score = 40.2 bits (93), Expect = 0.63, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 21/98 (21%) Query: 77 QTEKAIAFY-----QDILSRGGWPELPIRPLHL--------------GNSSVSVQRLRER 117 + +A Y +DI G P++ I P + G+ V+ L+ Sbjct: 343 ALQYTMAKYQTPDGRDIHEEGLNPDVEIDPPKILELTRQPISTDLSMGDEGEEVETLQSI 402 Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L ++ ++ FD + A++ FQ G+ +G Sbjct: 403 LKELDYF--TEEVTGEFDEHTRDALEKFQQARGISATG 438 >gi|325964353|ref|YP_004242259.1| peptidoglycan binding protein [Arthrobacter phenanthrenivorans Sphe3] gi|323470440|gb|ADX74125.1| putative peptidoglycan binding protein [Arthrobacter phenanthrenivorans Sphe3] Length = 734 Score = 40.2 bits (93), Expect = 0.64, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSV-AFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G +++ L G L + + D E A++ FQ L +G+ D +T Sbjct: 20 PGERKPGFNKVQSYLERFGYLGATTAREIGVLDDPTEGALRSFQEFFHLPVTGVFDDATR 79 Query: 163 EAM 165 EAM Sbjct: 80 EAM 82 >gi|226324793|ref|ZP_03800311.1| hypothetical protein COPCOM_02579 [Coprococcus comes ATCC 27758] gi|225207241|gb|EEG89595.1| hypothetical protein COPCOM_02579 [Coprococcus comes ATCC 27758] Length = 128 Score = 40.2 bits (93), Expect = 0.64, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G+S V++++E+L +I+G P + + S+V+ FQ GL + Sbjct: 44 PGYTLSQGSSGTKVRQMQEQLNVIAGAYPAIPKITVDGIYGPATASSVRKFQSVFGLPVT 103 Query: 155 GMVDSSTLE 163 G VD T Sbjct: 104 GTVDYRTWY 112 >gi|326441234|ref|ZP_08215968.1| hypothetical protein SclaA2_09211 [Streptomyces clavuligerus ATCC 27064] Length = 525 Score = 40.2 bits (93), Expect = 0.64, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 21/69 (30%), Gaps = 6/69 (8%) Query: 102 LHLGNSSVSVQRLRERLIISGD-----LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 G S SV RL ERL G P A D A + Q G + G Sbjct: 394 FRPGAVSPSVTRLGERLRQLGYGRHYTSGPGPDWGEA-DRRNVEAFQRAQGWSGTEADGY 452 Query: 157 VDSSTLEAM 165 T + Sbjct: 453 PGPHTWRRL 461 >gi|257453413|ref|ZP_05618708.1| ErfK/YbiS/YcfS/YnhG [Enhydrobacter aerosaccus SK60] gi|257449165|gb|EEV24113.1| ErfK/YbiS/YcfS/YnhG [Enhydrobacter aerosaccus SK60] Length = 495 Score = 40.2 bits (93), Expect = 0.64, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 20/113 (17%) Query: 65 SDIPIISKETIAQTEKA----------IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRL 114 + P T+ + A ++ Y +++ W G + S L Sbjct: 175 TAAPTFDPTTVGNNKTATTPASFSTLNLSDYAQLVNSADW--------KPGQNVNSATTL 226 Query: 115 R-ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + + L+ P + + A+K FQ HGL G + + + +N Sbjct: 227 KLQALLDWNHASPGPIDGG-WGMNAKKALKNFQAMHGLPQDGRMSAEVWKLLN 278 >gi|149374881|ref|ZP_01892654.1| hypothetical protein MDG893_07485 [Marinobacter algicola DG893] gi|149360770|gb|EDM49221.1| hypothetical protein MDG893_07485 [Marinobacter algicola DG893] Length = 300 Score = 40.2 bits (93), Expect = 0.64, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query: 135 DAYVESAVKLFQMRH-GLDPSGMVDSSTLEAMNVPVDL 171 D + SA++ +Q H GL +G +D TL A+ + Sbjct: 54 DDTLRSAIRKYQSGHEGLQATGDLDPQTLSALGIAAKD 91 >gi|320592558|gb|EFX04988.1| negative regulator of beta-lactamase expression protein [Grosmannia clavigera kw1407] Length = 305 Score = 40.2 bits (93), Expect = 0.65, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 29/102 (28%) Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLV 198 +AV +Q H L+ G++ T A+ + + G Y++V Sbjct: 47 AAAVARWQRDHALNIDGILGPKTAAALQG----------------RTW-KSPKGENYLIV 89 Query: 199 ---NIP-AASLEAVENGKVGLRSTVI--------VGRVDRQT 228 +P + + + + VI VG+ T Sbjct: 90 KGEKVPTSFPVVHWTHPEGFSFERVIEAIPDFNGVGKRANPT 131 >gi|167767428|ref|ZP_02439481.1| hypothetical protein CLOSS21_01947 [Clostridium sp. SS2/1] gi|167711403|gb|EDS21982.1| hypothetical protein CLOSS21_01947 [Clostridium sp. SS2/1] Length = 471 Score = 40.2 bits (93), Expect = 0.65, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR--VDRQTPILHSRINR 237 +G YV V++ A ++ + GK+ ++ + G+ DR+TP + I Sbjct: 345 NGDIGDTYVEVDMGAQTVYYFKKGKLKFTTSCVTGKMTADRKTPECVAYILY 396 >gi|307946479|ref|ZP_07661814.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] gi|307770143|gb|EFO29369.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] Length = 305 Score = 40.2 bits (93), Expect = 0.65, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 3/61 (4%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDSSTLEA 164 V+ +E L G DP ++AV +Q H L G++ +TL Sbjct: 174 QPDPVVEEAQEALKRFGF-DPGAIDGWM-GRRTKAAVLAYQKTHPHLTNDGIIGPATLAQ 231 Query: 165 M 165 + Sbjct: 232 L 232 >gi|291528185|emb|CBK93771.1| Putative peptidoglycan-binding domain-containing protein [Eubacterium rectale M104/1] Length = 420 Score = 40.2 bits (93), Expect = 0.65, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 8/89 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHG 150 WP I +G+S +V +++++L P+ + ++AV+ FQ G Sbjct: 335 WPGYNIG---IGSSGQNVYQIQKQLARIAKAYPAIPSIVPDGIYGPKTKAAVEKFQAVFG 391 Query: 151 LDPSGMVDSSTLEAM-NVPVD-LRIRQLQ 177 L SG+VD +T + N+ V RI +L Sbjct: 392 LPVSGVVDYNTWYEISNIYVAVTRIAELA 420 >gi|228943445|ref|ZP_04105889.1| Peptidoglycan-binding domain 1 protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976300|ref|ZP_04136771.1| Peptidoglycan-binding domain 1 protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783404|gb|EEM31512.1| Peptidoglycan-binding domain 1 protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816225|gb|EEM62406.1| Peptidoglycan-binding domain 1 protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 595 Score = 40.2 bits (93), Expect = 0.66, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIIS----GDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 P + G+ SV+ +++ L +L P +S FD+ +AVK+FQ Sbjct: 372 KSFPGYNIKEGDQKGSVRTIQKYLFQIRKKYSNL-PEIIISGTFDSNTVNAVKIFQRNFQ 430 Query: 151 LDPSGMVDSSTLEAMN 166 + +G+VD T +N Sbjct: 431 IPDNGIVDELTWNKLN 446 >gi|182438498|ref|YP_001826217.1| hypothetical protein SGR_4705 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467014|dbj|BAG21534.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 430 Score = 40.2 bits (93), Expect = 0.66, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 19/68 (27%), Gaps = 4/68 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGD----LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G ++ V RL +L+ G L D A + Q G G Sbjct: 361 FKPGQTNSHVDRLGRQLVKKGYGKHYLSGPDPRWTEADRRNVEAFQRAQGWRGGAADGYP 420 Query: 158 DSSTLEAM 165 T + Sbjct: 421 GPETWRRL 428 >gi|194366782|ref|YP_002029392.1| ErfK/YbiS/YcfS/YnhG family protein [Stenotrophomonas maltophilia R551-3] gi|194349586|gb|ACF52709.1| ErfK/YbiS/YcfS/YnhG family protein [Stenotrophomonas maltophilia R551-3] Length = 318 Score = 40.2 bits (93), Expect = 0.66, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 PG N + I+ + Y +H TPEP +V + E+ GCVR+ N Sbjct: 255 PPGPNNPVGRVWIDLSKPH--YGLHGTPEPG---HVGKTESHGCVRMTNWD 300 Score = 36.7 bits (84), Expect = 7.5, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Query: 115 RERLIISGDLDPSKGLSVAFDAYVES----AVKLFQMRHGLDPSGMVDSSTLEAM 165 R L LD + D V S AV FQ HGL +G VD T +A+ Sbjct: 42 RSALHAQVLLDRANFSPGQIDGEVGSNQRRAVSGFQAAHGLTVTGEVDDPTWKAL 96 >gi|300868169|ref|ZP_07112801.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506] gi|300333793|emb|CBN57981.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506] Length = 701 Score = 40.2 bits (93), Expect = 0.67, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 13/95 (13%) Query: 78 TEKAIAFYQDILSRGGWPELPIRPLH------LGNSSVSVQRLRERLIISGDLDPSKGLS 131 T +A+ Y S G + P+ GN S+SV+ L+E+L ++ Sbjct: 131 TRQAVISY----STGKPAMIFSTPIREFTNIYPGNRSLSVKELQEQLKTLDYYKG--LIT 184 Query: 132 VAFDAYVESAVKLFQMRH-GLDPSGMVDSSTLEAM 165 +D AV FQ + GL +G V+ +T + + Sbjct: 185 GNYDRPTAKAVSQFQKAYPGLPDNGTVNLTTKQLL 219 >gi|166153471|ref|YP_001653985.1| peptidoglycan binding protein [Bacillus thuringiensis] gi|165875310|gb|ABY68467.1| putative peptidoglycan binding protein [Bacillus thuringiensis] Length = 178 Score = 40.2 bits (93), Expect = 0.67, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G++ V +L+ L G + F ++ +V +Q H L + Sbjct: 97 PTQNRPTLRKGSTGYWVVKLQGFLQKIGYYSG--RIDGQFGHILDGSVSNYQRDHRLIIN 154 Query: 155 GMVDSSTLEAM 165 G+V T + Sbjct: 155 GIVGPKTWCQL 165 >gi|321469983|gb|EFX80961.1| hypothetical protein DAPPUDRAFT_303785 [Daphnia pulex] Length = 559 Score = 40.2 bits (93), Expect = 0.68, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 15/82 (18%) Query: 118 LIISGDLDPS----KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G LDP+ ++ V A+ FQ GL+ +G++D T M+ P Sbjct: 3 LARFGYLDPALQNPSSGALISGDSVRRAIIDFQSFAGLNQTGILDPETSTWMSKPRCGVR 62 Query: 169 ------VDLRIRQLQVNLMRIK 184 R ++ + R + Sbjct: 63 DRVGAGSSARRKRYALQGARWR 84 >gi|163761080|ref|ZP_02168157.1| putative amidase (ampd protein) [Hoeflea phototrophica DFL-43] gi|162281631|gb|EDQ31925.1| putative amidase (ampd protein) [Hoeflea phototrophica DFL-43] Length = 259 Score = 40.2 bits (93), Expect = 0.68, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 12/118 (10%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW-PELPIRP---LHLGNSSV 109 N +A + SDI + K+ + Y++ G W LP+ G+S Sbjct: 137 NGIAAERVLAHSDIAPMRKQDPGEMFPWNRLYRE--GIGHWVEPLPVGGGRFFQEGDSGQ 194 Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP--SGMVDSSTLEAM 165 V+ L+ L + G + + A + V+ FQ RH G+ D+ST+ + Sbjct: 195 PVEALQTMLALYGY---GLEVDGVYSAQTAAVVRAFQ-RHFRPARVDGIADASTIGTL 248 >gi|326779144|ref|ZP_08238409.1| hypothetical protein SACT1_5003 [Streptomyces cf. griseus XylebKG-1] gi|326659477|gb|EGE44323.1| hypothetical protein SACT1_5003 [Streptomyces cf. griseus XylebKG-1] Length = 430 Score = 40.2 bits (93), Expect = 0.68, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 19/68 (27%), Gaps = 4/68 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGD----LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G ++ V RL +L+ G L D A + Q G G Sbjct: 361 FKPGQTNSHVDRLGRQLVKKGYGKHYLSGPDPRWTEADRRNVEAFQRAQGWRGGAADGYP 420 Query: 158 DSSTLEAM 165 T + Sbjct: 421 GPETWRRL 428 >gi|149637115|ref|XP_001506645.1| PREDICTED: similar to metalloproteinase [Ornithorhynchus anatinus] Length = 616 Score = 40.2 bits (93), Expect = 0.68, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 16/95 (16%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDP 153 +P R L G L G L P+ ++SA+ Q +G++ Sbjct: 44 SVPSRVLSPGVW----------LQKYGYLPPTDPRMSVLRSAETMQSALAAMQQFYGINM 93 Query: 154 SGMVDSSTLEAMNVP----VDLRIRQLQVNLMRIK 184 +G VD +T++ M P D + N+ R + Sbjct: 94 TGKVDRNTIDWMKKPRCGVPDQTRGSSRFNIRRKR 128 >gi|118578915|ref|YP_900165.1| ErfK/YbiS/YcfS/YnhG family protein [Pelobacter propionicus DSM 2379] gi|118501625|gb|ABK98107.1| ErfK/YbiS/YcfS/YnhG family protein [Pelobacter propionicus DSM 2379] Length = 292 Score = 40.2 bits (93), Expect = 0.69, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 21/42 (50%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + +Y+LV++ L A ENG++ + G+ +TP Sbjct: 122 PARRYDKYILVDLTEQWLGAYENGRLVFSTPAATGKAGNETP 163 >gi|296131513|ref|YP_003638763.1| Peptidoglycan-binding domain 1 protein [Cellulomonas flavigena DSM 20109] gi|296023328|gb|ADG76564.1| Peptidoglycan-binding domain 1 protein [Cellulomonas flavigena DSM 20109] Length = 165 Score = 40.2 bits (93), Expect = 0.69, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 10/68 (14%) Query: 102 LHLGNSSVSVQRL--------RERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 L G+ V+ L R L +G + F A +AVK Q G+ Sbjct: 78 LQYGSRGPGVKALQAAINECHRATLNAAGL--ALLSVDGDFGAKTRTAVKAVQRSLGITV 135 Query: 154 SGMVDSST 161 G+ +T Sbjct: 136 DGVYGPTT 143 >gi|153955451|ref|YP_001396216.1| glycosyl hydrolase [Clostridium kluyveri DSM 555] gi|219855864|ref|YP_002472986.1| hypothetical protein CKR_2521 [Clostridium kluyveri NBRC 12016] gi|146348309|gb|EDK34845.1| Predicted glycosyl hydrolase [Clostridium kluyveri DSM 555] gi|219569588|dbj|BAH07572.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 306 Score = 40.2 bits (93), Expect = 0.69, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G+ S V ++++L G L + + +D AV Q G G++ T Sbjct: 243 GHRSHLVLWIQQKLEQYGYLKENSYTQMLYDETTFQAVTELQKNWGRSTDGVLKLQTW 300 >gi|86139891|ref|ZP_01058457.1| hypothetical protein MED193_12698 [Roseobacter sp. MED193] gi|85823520|gb|EAQ43729.1| hypothetical protein MED193_12698 [Roseobacter sp. MED193] Length = 431 Score = 40.2 bits (93), Expect = 0.69, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 12/97 (12%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 +A + AI + I GW L + S + ++ L G D V Sbjct: 347 LAGIQDAI---EAIAGACGWSTLDL-------SRDDYRAIQTMLNAGGF-DAGTPDGVWG 395 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + +A++ FQ ++GL P+G D +TLEA+ + Sbjct: 396 NGS-RNAMRTFQEQNGLAPTGAPDRATLEALGIQASD 431 >gi|255010410|ref|ZP_05282536.1| putative phage-related protein [Bacteroides fragilis 3_1_12] gi|313148212|ref|ZP_07810405.1| peptidoglycan-binding domain 1 protein [Bacteroides fragilis 3_1_12] gi|313136979|gb|EFR54339.1| peptidoglycan-binding domain 1 protein [Bacteroides fragilis 3_1_12] Length = 264 Score = 40.2 bits (93), Expect = 0.70, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 6/78 (7%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 ++ + L L + L +G S S F ++ +V FQ + LD G+V Sbjct: 1 MKTIKLDYEGEEALLLCQGLKRNGY---SVNESRIFTQEMKESVVDFQRKSQLDADGIVG 57 Query: 159 SSTLEAM---NVPVDLRI 173 T E++ P R+ Sbjct: 58 YRTWESLFFTGRPTTERL 75 >gi|160937909|ref|ZP_02085267.1| hypothetical protein CLOBOL_02803 [Clostridium bolteae ATCC BAA-613] gi|158439135|gb|EDP16889.1| hypothetical protein CLOBOL_02803 [Clostridium bolteae ATCC BAA-613] Length = 416 Score = 40.2 bits (93), Expect = 0.70, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V++++E+L I + P + + +AV+ FQ GL + Sbjct: 332 PGSDLTIGSSGDKVRQMQEQLDEIATVYSAIPRVTPDGIYGSGTANAVREFQSIFGLPQT 391 Query: 155 GMVDSSTLE 163 G+VD +T Sbjct: 392 GVVDFATWY 400 >gi|23098711|ref|NP_692177.1| hypothetical protein OB1256 [Oceanobacillus iheyensis HTE831] gi|22776938|dbj|BAC13212.1| hypothetical protein [Oceanobacillus iheyensis HTE831] Length = 245 Score = 40.2 bits (93), Expect = 0.70, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L + + V+ ++ +L G + F + E V FQ +H L G+V Sbjct: 59 TLKEDSVGLEVELVQVKLNHFGF---ETDVDGIFGSKTEKQVMNFQKKHDLIIDGIVGEE 115 Query: 161 TLEAM 165 T A+ Sbjct: 116 TWIAL 120 >gi|303238433|ref|ZP_07324968.1| carboxyl-terminal protease [Acetivibrio cellulolyticus CD2] gi|302594137|gb|EFL63850.1| carboxyl-terminal protease [Acetivibrio cellulolyticus CD2] Length = 497 Score = 40.2 bits (93), Expect = 0.70, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD----L 171 + L G + D A+ FQ +GL P G++D ST +A+N ++ Sbjct: 426 KILKFCGY--EVDSPDMFLDGETSDAIYKFQKDNGLYPYGVLDFSTQQALNNKLEKLQSE 483 Query: 172 RIRQLQVNLM 181 +Q+ L Sbjct: 484 YDKQMAKALE 493 >gi|237756533|ref|ZP_04585060.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237691307|gb|EEP60388.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 254 Score = 40.2 bits (93), Expect = 0.70, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEA---VENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 +KK L + V V++ L +E+G + V G + TP I Sbjct: 106 LKKKLPENFNYNTVYVSLKDKRLYYPIKLEDGDYVITFPVGTGDEEYPTPTGEFTITEKK 165 Query: 240 FNPYWVIPRS 249 NP W++P S Sbjct: 166 VNPDWIVPPS 175 >gi|291520973|emb|CBK79266.1| Cell wall-associated hydrolases (invasion-associated proteins) [Coprococcus catus GD/7] Length = 331 Score = 40.2 bits (93), Expect = 0.71, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 21/41 (51%) Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + + + V FQ +HGLD +G VD +T AM + + Sbjct: 134 GALYTSEIADTVADFQAQHGLDATGTVDLTTWLAMGLSEED 174 >gi|258655247|ref|YP_003204403.1| transglycosylase [Nakamurella multipartita DSM 44233] gi|258558472|gb|ACV81414.1| Transglycosylase domain protein [Nakamurella multipartita DSM 44233] Length = 317 Score = 40.2 bits (93), Expect = 0.71, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P P R G++++ +Q +++L G + + ++AV Q +G++PS Sbjct: 246 PAWPGRQFVQGDTALELQCFQKQLASRGY---PLTGTGYYGPATKTAVVQLQNANGINPS 302 Query: 155 GMVDSSTLEA 164 G++ T A Sbjct: 303 GILGPKTWAA 312 >gi|149458799|ref|XP_001516526.1| PREDICTED: similar to matrix metalloproteinase-21, partial [Ornithorhynchus anatinus] Length = 488 Score = 40.2 bits (93), Expect = 0.71, Method: Composition-based stats. Identities = 12/27 (44%), Positives = 18/27 (66%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V+ FQ +GL +G +D +T+ AMN P Sbjct: 31 VRGFQRVNGLPATGRLDEATVAAMNGP 57 >gi|47215834|emb|CAG00689.1| unnamed protein product [Tetraodon nigroviridis] Length = 618 Score = 40.2 bits (93), Expect = 0.71, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 7/94 (7%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L + + + SAV Q +GL+ +G +D T+ AM P D Sbjct: 4 LRMYGYLPQASRQMSTMRSAQILSSAVSDMQRFYGLEVTGKMDPETISAMKRPRCGVPDK 63 Query: 172 RIRQLQVNLMRIKK-LLEQKMGLRYVLVNIPAAS 204 Q++ N+ R + L K + +I + Sbjct: 64 FGGQIKTNVRRKRYALTGHKWSKNRLTYSIQNYT 97 >gi|317500504|ref|ZP_07958727.1| hypothetical protein HMPREF1026_00670 [Lachnospiraceae bacterium 8_1_57FAA] gi|316898093|gb|EFV20141.1| hypothetical protein HMPREF1026_00670 [Lachnospiraceae bacterium 8_1_57FAA] Length = 482 Score = 40.2 bits (93), Expect = 0.72, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 57/175 (32%), Gaps = 55/175 (31%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWV 245 Q G Y+ V++ A + + NG + L + V+ G D TP + + I++ Sbjct: 347 AQDWGTTYLEVDLSAQHMWYIVNGAIALETDVVTGLPDAKHATP---AGVYSILY----T 399 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 P S + + +DP E GK ++ V + P F + Q G Sbjct: 400 EPDSKLIGE------KDP------------ETGKPIYETYVRYWMP----FTY-QGHG-- 434 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILF--NNVVRFETSGCVRVRNIIDLDVWLLK 358 HD F + + + GC V +D L Sbjct: 435 -----------------FHDADWQTAFGGSRYQSYGSHGC--VNMPVDQAGALFN 470 >gi|188580147|ref|YP_001923592.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylobacterium populi BJ001] gi|179343645|gb|ACB79057.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylobacterium populi BJ001] Length = 250 Score = 40.2 bits (93), Expect = 0.72, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 21/129 (16%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW------------PELPIRP 101 + R+ I I + +A ++ A A +D W P P+R Sbjct: 117 AAVTRLARDIVVRRAIPAPRVLAHSDVAPARKEDPGENFPWERLAQEGVGHWVPPAPVRD 176 Query: 102 ---LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP--SGM 156 L +G + V+ L+ L + G P G FDA + V FQ RH G+ Sbjct: 177 GRFLAMGETGQPVEALQAMLALYGYAQPVTG---QFDAATGAVVTAFQ-RHFRPARIDGV 232 Query: 157 VDSSTLEAM 165 DSST+ + Sbjct: 233 ADSSTITTL 241 >gi|153816184|ref|ZP_01968852.1| hypothetical protein RUMTOR_02432 [Ruminococcus torques ATCC 27756] gi|331089397|ref|ZP_08338296.1| hypothetical protein HMPREF1025_01879 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846519|gb|EDK23437.1| hypothetical protein RUMTOR_02432 [Ruminococcus torques ATCC 27756] gi|330404765|gb|EGG84303.1| hypothetical protein HMPREF1025_01879 [Lachnospiraceae bacterium 3_1_46FAA] Length = 469 Score = 40.2 bits (93), Expect = 0.72, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 57/175 (32%), Gaps = 55/175 (31%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTPILHSRINRIMFNPYWV 245 Q G Y+ V++ A + + NG + L + V+ G D TP + + I++ Sbjct: 334 AQDWGTTYLEVDLSAQHMWYIVNGAIALETDVVTGLPDAKHATP---AGVYSILY----T 386 Query: 246 IPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKI 305 P S + + +DP E GK ++ V + P F + Q G Sbjct: 387 EPDSKLIGE------KDP------------ETGKPIYETYVRYWMP----FTY-QGHG-- 421 Query: 306 NAMASTKIEFYSRNNTYMHDTPEPILF--NNVVRFETSGCVRVRNIIDLDVWLLK 358 HD F + + + GC V +D L Sbjct: 422 -----------------FHDADWQTAFGGSRYQSYGSHGC--VNMPVDQAGALFN 457 >gi|319408149|emb|CBI81802.1| peptidoglycan-binding protein [Bartonella schoenbuchensis R1] Length = 418 Score = 40.2 bits (93), Expect = 0.72, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L+ RL GD + + A+K FQ+RHGL+ +G Sbjct: 365 ELQSRLAALGDYKGEIDGKIG--TASKQAIKSFQLRHGLEANG 405 >gi|238059701|ref|ZP_04604410.1| peptidoglycan-binding protein [Micromonospora sp. ATCC 39149] gi|237881512|gb|EEP70340.1| peptidoglycan-binding protein [Micromonospora sp. ATCC 39149] Length = 444 Score = 40.2 bits (93), Expect = 0.72, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 51/165 (30%), Gaps = 15/165 (9%) Query: 21 PMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEK 80 + + P A+V + + ++ V+ R +T A + Sbjct: 122 DAAEAGIAPPASATVTRQTLADAKT--VDGELGYGPDRTAASRLPGTITALPDTGATVSR 179 Query: 81 AIAFYQDILSRGGWPEL-------PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA 133 A Y + G P + R L G + L G + Sbjct: 180 GRALY----AVDGDPVVLLYGKLPAYRMLQPGVEGPDAAQFERNLKALGY--SGFTVDDE 233 Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 + + AV+ +Q G+ +G V+ + + PV + QL + Sbjct: 234 YTSATADAVRAWQDDLGVAETGRVEPGRIGYADGPVRVEGHQLDL 278 >gi|304385536|ref|ZP_07367880.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Pediococcus acidilactici DSM 20284] gi|304328040|gb|EFL95262.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Pediococcus acidilactici DSM 20284] Length = 457 Score = 40.2 bits (93), Expect = 0.73, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTP 229 ++G YV V+ + ++GK+ + + V+ G+ TP Sbjct: 328 ELGTTYVEVDKTNQHMWYYKDGKLQISTDVVTGKPSGGNTTP 369 >gi|307330400|ref|ZP_07609544.1| Peptidoglycan-binding domain 1 protein [Streptomyces violaceusniger Tu 4113] gi|306883917|gb|EFN14959.1| Peptidoglycan-binding domain 1 protein [Streptomyces violaceusniger Tu 4113] Length = 382 Score = 40.2 bits (93), Expect = 0.74, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R + G+ V++L E L G F AV+ +Q GL +G V Sbjct: 143 RDMKSGDKGEDVRQLEENLQALGY--SGFTPDSEFTDLTAQAVERWQKTLGLSQTGKV 198 >gi|269128526|ref|YP_003301896.1| peptidoglycan-binding domain 1 protein [Thermomonospora curvata DSM 43183] gi|268313484|gb|ACY99858.1| Peptidoglycan-binding domain 1 protein [Thermomonospora curvata DSM 43183] Length = 440 Score = 40.2 bits (93), Expect = 0.74, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 14/83 (16%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 R L G+ V++L L G DP + L +D E AV+ + +HG +P+G Sbjct: 134 RTLGPGDKGEDVEQLERALARLGF-DPGR-LDGRYDGATERAVEKWYGKHGYEPAG---- 187 Query: 160 STLEAMNVPVDLRIRQLQVNLMR 182 P +L+ R Sbjct: 188 --------PTAEDRSRLEAARER 202 >gi|270290196|ref|ZP_06196422.1| hypothetical protein HMPREF9024_00382 [Pediococcus acidilactici 7_4] gi|270281733|gb|EFA27565.1| hypothetical protein HMPREF9024_00382 [Pediococcus acidilactici 7_4] Length = 457 Score = 39.8 bits (92), Expect = 0.75, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTP 229 ++G YV V+ + ++GK+ + + V+ G+ TP Sbjct: 328 ELGTTYVEVDKTNQHMWYYKDGKLQISTDVVTGKPSGGNTTP 369 >gi|298527994|ref|ZP_07015398.1| Peptidoglycan-binding domain 1 protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511646|gb|EFI35548.1| Peptidoglycan-binding domain 1 protein [Desulfonatronospira thiodismutans ASO3-1] Length = 412 Score = 39.8 bits (92), Expect = 0.75, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 16/84 (19%) Query: 94 WPELPIRP------------LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 WP R L N+ + + RL G L + +E A Sbjct: 327 WPAFDGRTALQGPIARLGIMLEPENADDA-GMIASRLHELGFLKNADNKCE---EKLEEA 382 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAM 165 +K+FQ GL+PSG + T + + Sbjct: 383 LKIFQHTRGLNPSGQWSAETQKKL 406 >gi|323454425|gb|EGB10295.1| hypothetical protein AURANDRAFT_62829 [Aureococcus anophagefferens] Length = 749 Score = 39.8 bits (92), Expect = 0.75, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 8/62 (12%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + + G++ + L + G K F A V V+ Q GL G+V Sbjct: 511 KSVKEGDADDDAAEV---LKLLG-----KEPGAGFTAEVSDEVRKIQRAAGLVDDGVVGP 562 Query: 160 ST 161 T Sbjct: 563 KT 564 >gi|237793906|ref|YP_002861458.1| hypothetical protein CLJ_B0656 [Clostridium botulinum Ba4 str. 657] gi|229260455|gb|ACQ51488.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657] Length = 694 Score = 39.8 bits (92), Expect = 0.75, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 53/149 (35%), Gaps = 9/149 (6%) Query: 30 PIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIP---IISKETIAQTEKAIAFYQ 86 + S +DE + S + L R IP + S++T KA+ + Sbjct: 125 KVLLSTMDEFVLASTGDPNVRKIQQNLNRDYYETIGLIPCNGVYSRDTNRALIKALQVEE 184 Query: 87 DILSRGGWPELPIR--PLHLGNSSVS--VQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 I G W P G++S V L+ L ++G +DP G F + +A+ Sbjct: 185 GITPDGIWGPGTQDKCPTIPGSNSNQRYVLLLQYSLYVNG-IDP-NGFDGLFGNGLSNAI 242 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 K FQ L G ++ V Sbjct: 243 KEFQSFCALPADGYAGKQVWASLLVSTGD 271 >gi|154685699|ref|YP_001420860.1| XlyA [Bacillus amyloliquefaciens FZB42] gi|154351550|gb|ABS73629.1| XlyA [Bacillus amyloliquefaciens FZB42] Length = 292 Score = 39.8 bits (92), Expect = 0.75, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 4/62 (6%) Query: 103 HLGNSSVSVQRLRERLIISGDLDP----SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 S V +++ L + G+ + AV FQ +GL G+ Sbjct: 222 EPYTSGEKVYQVQNALAALYFYPEKGAVNNGIDGIYGPKTADAVARFQSVNGLTSDGVYG 281 Query: 159 SS 160 + Sbjct: 282 PA 283 >gi|16264761|ref|NP_437553.1| hypothetical protein SM_b21573 [Sinorhizobium meliloti 1021] gi|15140899|emb|CAC49413.1| hypothetical exported protein [Sinorhizobium meliloti 1021] Length = 327 Score = 39.8 bits (92), Expect = 0.75, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 8/57 (14%) Query: 303 GKINAMASTKIEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 G N + + I+ H TPEP L + ++ GCVR+ N +L + Sbjct: 266 GPNNPVGTVWIDLTEPTYGI--HGTPEPSLIDK---AQSHGCVRLTNWDAEELAAMV 317 >gi|269217207|ref|ZP_06161061.1| penicillin-resistant DD-carboxypeptidase [Slackia exigua ATCC 700122] gi|269129344|gb|EEZ60429.1| penicillin-resistant DD-carboxypeptidase [Slackia exigua ATCC 700122] Length = 247 Score = 39.8 bits (92), Expect = 0.76, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V+ L+ L G G+ F AY E A++ FQ+ GL G+ T + + Sbjct: 29 QGEDVEDLQTALGALGF--SCGGVDGTFGAYTEGALRKFQVNMGLVSDGIAGVKTYDTL 85 >gi|171702397|dbj|BAG16271.1| matrix metalloproteinase 9 [Rhabdophis tigrinus tigrinus] Length = 677 Score = 39.8 bits (92), Expect = 0.76, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 6/77 (7%) Query: 95 PELPIRPLHLGNSSVSVQ--RLRER-LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 P+ P+ G++ + L R L G L S +E+ +K Q + GL Sbjct: 28 PKGPVVVNFPGDALSLLTDRELAARYLQRYGYLTASNPGGQV---KLETPLKAMQKQLGL 84 Query: 152 DPSGMVDSSTLEAMNVP 168 +G +D+STL AM P Sbjct: 85 PETGELDASTLAAMRAP 101 >gi|284044768|ref|YP_003395108.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] gi|283948989|gb|ADB51733.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] Length = 349 Score = 39.8 bits (92), Expect = 0.77, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 V V+ ++ G++ +V VG + TP + + +P W +P S Sbjct: 222 VTVSKSGTTVRVFVRGELSKTYSVAVGSAEYPTPGGQFTVQTMQVDPPWNVPNS 275 >gi|255648146|gb|ACU24527.1| unknown [Glycine max] Length = 388 Score = 39.8 bits (92), Expect = 0.77, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 17/107 (15%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 L G ++ S+ + +FD SA+K +Q L +G+ + ++ M + LR Sbjct: 97 LSEYGYIESSRPFNNSFDQETMSAIKTYQKFSNLPVTGVPNKQLIQQM---LSLRCGVPD 153 Query: 178 VNLMRI-------------KKLLEQKMGLRYVLVN-IPAASLEAVEN 210 VN + + + ++ N IP + + Sbjct: 154 VNFDYNFTDDNTSYPKAGHRWFPNRNLTYGFLPENQIPDNMTKVFRD 200 >gi|331084634|ref|ZP_08333722.1| hypothetical protein HMPREF0987_00025 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410728|gb|EGG90150.1| hypothetical protein HMPREF0987_00025 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 128 Score = 39.8 bits (92), Expect = 0.77, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G+S V++++E L +I+G P + + ++VK FQ GL + Sbjct: 44 PGYVLENGSSGNKVRQMQEELNVIAGAYPAIPKITVDGIYGPATAASVKKFQSVFGLPAT 103 Query: 155 GMVDSSTLE 163 G VD T Sbjct: 104 GTVDYRTWY 112 >gi|301631743|ref|XP_002944955.1| PREDICTED: matrix metalloproteinase-21-like, partial [Xenopus (Silurana) tropicalis] Length = 409 Score = 39.8 bits (92), Expect = 0.77, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 22/115 (19%) Query: 80 KAIAFYQDIL----SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD 135 + + Y + + + P+ L + S LI G+ + +S + + Sbjct: 1 QYLVKYGWVAPVNWEEQAFTDFPVHDLAPQDVSQ--------LISEGESEEHPRVSNSSE 52 Query: 136 AYVE------SAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDLRIRQLQVNL 180 E ++K FQ +GL +G++DS+T AMN P D ++ + N Sbjct: 53 NETEINPSFIDSLKKFQDANGLTATGVLDSATKIAMNKPRCGVPDFKVASRRKNA 107 >gi|157737917|ref|YP_001490601.1| hypothetical protein Abu_1684 [Arcobacter butzleri RM4018] gi|157699771|gb|ABV67931.1| hypothetical protein Abu_1684 [Arcobacter butzleri RM4018] Length = 196 Score = 39.8 bits (92), Expect = 0.77, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 16/26 (61%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMN 166 A+K Q G+ G++ + TL+A+N Sbjct: 117 AIKEAQKLIGVTADGIIGTQTLKALN 142 >gi|167039606|ref|YP_001662591.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter sp. X514] gi|300915144|ref|ZP_07132459.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X561] gi|307725068|ref|YP_003904819.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X513] gi|166853846|gb|ABY92255.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X514] gi|300888868|gb|EFK84015.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X561] gi|307582129|gb|ADN55528.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp. X513] Length = 422 Score = 39.8 bits (92), Expect = 0.77, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 2/70 (2%) Query: 96 ELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 R L+ G V+ L+ L +G + + F + V FQ L P G Sbjct: 38 TFGSRLLYSGTYGTDVEELQAMLNKAGF--DTGTVDGIFGKMTLNGVLDFQRSKNLVPDG 95 Query: 156 MVDSSTLEAM 165 +V A+ Sbjct: 96 IVGPKIYAAL 105 >gi|255526573|ref|ZP_05393481.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium carboxidivorans P7] gi|296187551|ref|ZP_06855946.1| ErfK/YbiS/YcfS/YnhG [Clostridium carboxidivorans P7] gi|255509758|gb|EET86090.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium carboxidivorans P7] gi|296048073|gb|EFG87512.1| ErfK/YbiS/YcfS/YnhG [Clostridium carboxidivorans P7] Length = 125 Score = 39.8 bits (92), Expect = 0.78, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 19/48 (39%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 Y+ +N + +L N + V VG+ TP +I NP Sbjct: 17 YIKINTQSHTLTLFRNNSIYKTYRVAVGKPSTPTPKGTFKIINRAINP 64 >gi|307313300|ref|ZP_07592924.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] gi|307320767|ref|ZP_07600178.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306893585|gb|EFN24360.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti AK83] gi|306899313|gb|EFN29948.1| ErfK/YbiS/YcfS/YnhG family protein [Sinorhizobium meliloti BL225C] Length = 327 Score = 39.8 bits (92), Expect = 0.79, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 8/57 (14%) Query: 303 GKINAMASTKIEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 G N + + I+ H TPEP L + ++ GCVR+ N +L + Sbjct: 266 GPNNPVGTVWIDLTEPTYGI--HGTPEPSLIDK---AQSHGCVRLTNWDAEELAAMV 317 >gi|302551661|ref|ZP_07304003.1| membrane protein [Streptomyces viridochromogenes DSM 40736] gi|302469279|gb|EFL32372.1| membrane protein [Streptomyces viridochromogenes DSM 40736] Length = 510 Score = 39.8 bits (92), Expect = 0.79, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 4/68 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDP-SKGLSVAFDAYVESAVKLFQM---RHGLDPSGMV 157 G ++ + R+R +L+ G + + AV+ FQ G G Sbjct: 441 FRPGEANPHITRMRRQLVRKGFGRFYTAEPGPRWSEADRRAVEAFQRTQGWRGGAADGFP 500 Query: 158 DSSTLEAM 165 T + Sbjct: 501 GPETWRRL 508 >gi|153954450|ref|YP_001395215.1| hydrolase [Clostridium kluyveri DSM 555] gi|219855040|ref|YP_002472162.1| hypothetical protein CKR_1697 [Clostridium kluyveri NBRC 12016] gi|146347331|gb|EDK33867.1| Predicted hydrolase [Clostridium kluyveri DSM 555] gi|219568764|dbj|BAH06748.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 279 Score = 39.8 bits (92), Expect = 0.79, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 1/63 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE- 163 G+ S V L+++L + G L + +D AV Q G++ T Sbjct: 216 GHKSHIVLWLQQKLEMWGYLKKGSYTDMIYDEPTFQAVTELQKNWERPTDGVLKIETWNI 275 Query: 164 AMN 166 +N Sbjct: 276 FLN 278 >gi|328954812|ref|YP_004372145.1| Peptidoglycan-binding domain 1 protein [Coriobacterium glomerans PW2] gi|328455136|gb|AEB06330.1| Peptidoglycan-binding domain 1 protein [Coriobacterium glomerans PW2] Length = 301 Score = 39.8 bits (92), Expect = 0.80, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + P+ G +V+ ++ RL++ G +D ++ F + AV+ F+ L P G Sbjct: 1 MEPITAGMQGPAVEDVQTRLVLLGHAIDATELDDQRFGSSTARAVRSFRQSKAL-PDG 57 Score = 38.7 bits (89), Expect = 2.1, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 12/82 (14%) Query: 94 WPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W +L LG+ V+ L+ L G S F + E+A++ Sbjct: 65 WSKLVDASYRLGDRTLYLRLPNFHGADVRELQTALNTLGFSCGSADS--HFGPHTEAALQ 122 Query: 144 LFQMRHGLDPSGMVDSSTLEAM 165 FQ GL GM T + Sbjct: 123 QFQENVGLFADGMAFQDTFSYI 144 >gi|254500718|ref|ZP_05112869.1| N-acetylmuramoyl-L-alanine amidase domain protein [Labrenzia alexandrii DFL-11] gi|222436789|gb|EEE43468.1| N-acetylmuramoyl-L-alanine amidase domain protein [Labrenzia alexandrii DFL-11] Length = 263 Score = 39.8 bits (92), Expect = 0.80, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 4/65 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMVDSS 160 + G V+ L+ L + G ++ FD V FQ G+VD+S Sbjct: 191 MQEGEEGQPVEALQSMLALYGY---EVDINGRFDRRTSEVVTAFQRHFRPEKVDGVVDAS 247 Query: 161 TLEAM 165 T+E + Sbjct: 248 TIETL 252 >gi|163844269|ref|YP_001621924.1| lytic murein transglycosylase [Brucella suis ATCC 23445] gi|163674992|gb|ABY39102.1| lytic murein transglycosylase [Brucella suis ATCC 23445] Length = 408 Score = 39.8 bits (92), Expect = 0.80, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ L G D G + +A++ FQ R+GL+P G L + Sbjct: 359 ELQTHLKALGYYDGKIGATSR------AAIEAFQQRNGLEPDGHPSKEVLSVL 405 >gi|149915748|ref|ZP_01904273.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseobacter sp. AzwK-3b] gi|149810330|gb|EDM70175.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseobacter sp. AzwK-3b] Length = 184 Score = 39.8 bits (92), Expect = 0.80, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Query: 298 FRQDPGKINAMA-STKIEFYSRNNTYM--HDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 + Q G N + F + +TY H T P ++ R ++GC+R+ ++ DL Sbjct: 115 YVQPGGPENPLGARALYLFQNGRDTYFRIHGTNAPR---SIGRSVSNGCIRMLNEHVQDL 171 >gi|23499837|ref|NP_699277.1| transglycosylase [Brucella suis 1330] gi|161620160|ref|YP_001594046.1| lytic murein transglycosylase [Brucella canis ATCC 23365] gi|254702504|ref|ZP_05164332.1| lytic murein transglycosylase [Brucella suis bv. 3 str. 686] gi|260568590|ref|ZP_05839059.1| lytic murein transglycosylase [Brucella suis bv. 4 str. 40] gi|261753077|ref|ZP_05996786.1| lytic Murein transglycosylase [Brucella suis bv. 3 str. 686] gi|23463407|gb|AAN33282.1| transglycosylase, putative [Brucella suis 1330] gi|161336971|gb|ABX63275.1| lytic murein transglycosylase [Brucella canis ATCC 23365] gi|260155255|gb|EEW90336.1| lytic murein transglycosylase [Brucella suis bv. 4 str. 40] gi|261742830|gb|EEY30756.1| lytic Murein transglycosylase [Brucella suis bv. 3 str. 686] Length = 408 Score = 39.8 bits (92), Expect = 0.81, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ L G D G + +A++ FQ R+GL+P G L + Sbjct: 359 ELQTHLKALGYYDGKIGATSR------AAIEAFQQRNGLEPDGHPSKEVLSVL 405 >gi|328882661|emb|CCA55900.1| hypothetical protein SVEN_2614 [Streptomyces venezuelae ATCC 10712] Length = 464 Score = 39.8 bits (92), Expect = 0.81, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 4/70 (5%) Query: 100 RPLHLGNSSVSVQRLRERLIISG----DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 G S+ V++L ++L+ G L D A + Q G G Sbjct: 393 GSFRPGQSNAYVEKLGKQLVKRGFGKHYLSGPGPRWTEADRRNVEAFQRAQGWRGAAADG 452 Query: 156 MVDSSTLEAM 165 T + Sbjct: 453 YPGPETWRRL 462 >gi|294944769|ref|XP_002784421.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] gi|239897455|gb|EER16217.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983] Length = 1445 Score = 39.8 bits (92), Expect = 0.81, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMR 182 A+K FQ H L G +D T + + ++ R ++++ R Sbjct: 1015 VDAIKGFQEYHSLPVDGNMDDRTWQLLVDSLETRRQKIE---ER 1055 >gi|188996891|ref|YP_001931142.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931958|gb|ACD66588.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 254 Score = 39.8 bits (92), Expect = 0.81, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEA---VENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 +KK L + V V++ L +E+G + V G + TP I Sbjct: 106 LKKKLPENFNYNTVYVSLKDKRLYYPIKLEDGDYVITFPVGTGDEEYPTPTGEFAITEKK 165 Query: 240 FNPYWVIPRS 249 NP W++P S Sbjct: 166 INPDWIVPPS 175 >gi|168181513|ref|ZP_02616177.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|182675396|gb|EDT87357.1| conserved hypothetical protein [Clostridium botulinum Bf] Length = 694 Score = 39.8 bits (92), Expect = 0.81, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 6/107 (5%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVS--VQRLRERLIISGDL 124 + S++T KA+ + I G W P G++S V L+ L ++G + Sbjct: 167 VYSRDTNRALIKALQVEEGITPDGIWGPGTQDKCPTIPGSNSNQRYVLLLQYSLYVNG-I 225 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 DP G F + +A+K FQ L G ++ V Sbjct: 226 DP-NGFDGLFGNGLSNAIKEFQSFCALPADGYAGKQVWASLLVSTGD 271 >gi|149733599|ref|XP_001499275.1| PREDICTED: similar to matrix metalloproteinase 24 preproprotein (predicted) [Equus caballus] Length = 666 Score = 39.8 bits (92), Expect = 0.81, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 13/145 (8%) Query: 26 LVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFY 85 L++ P A+ L +I + D + + + +P + I + Sbjct: 25 LIQNPKCATSLGMVIVWLVVASWVWAKDIVQSAREFPLVHLLPTQELVAAKRQRCTIKVF 84 Query: 86 QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA--YVESAVK 143 L R W L ++ RL L G L P + A + ++SAV Sbjct: 85 VKKLRRALWAIL-----------KALFRLANWLKSYGYLLPYDSRASALHSGKALQSAVS 133 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVP 168 Q +G+ +G++D +T+E M P Sbjct: 134 TMQQFYGIPVTGVLDQTTIEWMKKP 158 >gi|313888150|ref|ZP_07821824.1| conserved hypothetical protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845840|gb|EFR33227.1| conserved hypothetical protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 479 Score = 39.8 bits (92), Expect = 0.82, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRI 235 +G Y+ V++ L ++G + L + V+ G TP RI Sbjct: 326 DDVGNTYIEVDLARQKLWYYKDGVLQLETNVVTGNPTKGNGTPTGTDRI 374 >gi|148379399|ref|YP_001253940.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 3502] gi|153931814|ref|YP_001383776.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 19397] gi|153936376|ref|YP_001387326.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. Hall] gi|148288883|emb|CAL82968.1| putative N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 3502] gi|152927858|gb|ABS33358.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 19397] gi|152932290|gb|ABS37789.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. Hall] Length = 275 Score = 39.8 bits (92), Expect = 0.83, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 8/76 (10%) Query: 90 SRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 SR G+ P G + +++ LI G S G S AVK FQ Sbjct: 203 SRQGFNTFPA--CRQGARGNITKIIQQMLINIGYTVGSFGNST------VMAVKSFQRDC 254 Query: 150 GLDPSGMVDSSTLEAM 165 L +V T +A+ Sbjct: 255 NLSADVLVGKETWKAL 270 >gi|261855752|ref|YP_003263035.1| ErfK/YbiS/YcfS/YnhG family protein [Halothiobacillus neapolitanus c2] gi|261836221|gb|ACX95988.1| ErfK/YbiS/YcfS/YnhG family protein [Halothiobacillus neapolitanus c2] Length = 220 Score = 39.8 bits (92), Expect = 0.83, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 61/199 (30%), Gaps = 59/199 (29%) Query: 167 VPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGL-----RSTVIV 221 V ++ L +N +++V+ L E ++ L S V V Sbjct: 44 VTAQKQVHSLLMN--------SGAGDAPFIIVDASDQKLYLFERNQLKLNFSVSTSAVGV 95 Query: 222 GRVD--RQTPI-LHSRINRIMFNPYWVIPRSIIQK-------DMMALLRQDPQYLKDNNI 271 G + +TP+ LH I +K M+ R+ L D Sbjct: 96 GSAEGSNRTPLGLH----------------RIAEKFGDGEPIGMIFKARRPTGQLADIQT 139 Query: 272 HMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNN--TYMHDTPEP 329 I G +V + W PG + Y+H TPE Sbjct: 140 KPIKGDGDDVT-TRIMWLQGL--------QPGINEGKGV------DSHARYIYIHGTPEE 184 Query: 330 ILFNNVVRFETSGCVRVRN 348 L R E+ GC+R+ N Sbjct: 185 GLIG---RPESHGCIRMNN 200 >gi|315649800|ref|ZP_07902883.1| carboxyl-terminal protease [Paenibacillus vortex V453] gi|315274774|gb|EFU38155.1| carboxyl-terminal protease [Paenibacillus vortex V453] Length = 489 Score = 39.8 bits (92), Expect = 0.84, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%) Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 L G + FD E AVK FQ ++ L G++ Sbjct: 408 MLEAVGY--KTGRSDGYFDRNTEKAVKSFQSKNKLKADGII 446 >gi|297263898|ref|XP_002798895.1| PREDICTED: matrix metalloproteinase-17-like [Macaca mulatta] Length = 845 Score = 39.8 bits (92), Expect = 0.84, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 2/80 (2%) Query: 113 RLRERLIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVD 170 L+E L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 291 LLKEWLSRFGYLPPADPTTGQLQTQEELSKAITAMQQFGGLEATGILDEATLALMRTPRC 350 Query: 171 LRIRQLQVNLMRIKKLLEQK 190 + R ++ Sbjct: 351 SLPDLPVLTQARRRRQAPAP 370 >gi|255318424|ref|ZP_05359657.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter radioresistens SK82] gi|262378654|ref|ZP_06071811.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|255304416|gb|EET83600.1| ErfK/YbiS/YcfS/YnhG [Acinetobacter radioresistens SK82] gi|262299939|gb|EEY87851.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 418 Score = 39.8 bits (92), Expect = 0.84, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 25/100 (25%) Query: 288 WNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFET 340 W S P NF PG + + I S+ + +H TP P L + + Sbjct: 335 WYSYSPSNFVQGNNKKPLSLPPGPNGPVGNIWIGL-SKKSFGIHGTPNPSLISKTA---S 390 Query: 341 SGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPV 380 GC+R+ N W + + V++ T Sbjct: 391 HGCIRLTN--------------WDANDLGKKVRSGVTVKF 416 Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 16/26 (61%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAM 165 A+ FQ +GL P+G++ T +A+ Sbjct: 169 KAIASFQQMNGLKPTGVLTKETWDAL 194 >gi|229197343|ref|ZP_04324072.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus m1293] gi|228586151|gb|EEK44240.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus m1293] Length = 488 Score = 39.8 bits (92), Expect = 0.85, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ L + V+ G+ Sbjct: 361 GDTYAEVSIADQQIWIYKDGKLVLTTNVVTGK 392 >gi|222109277|ref|YP_002551541.1| peptidoglycan-binding domain 1 protein [Acidovorax ebreus TPSY] gi|221728721|gb|ACM31541.1| Peptidoglycan-binding domain 1 protein [Acidovorax ebreus TPSY] Length = 346 Score = 39.8 bits (92), Expect = 0.85, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ERL G + S A++ FQ GL +G +DS+T A+ Sbjct: 297 ERLNAMGYNVGTPDGSAG--PKTARALREFQQAQGLPVTGRLDSATAGAL 344 >gi|160892800|ref|ZP_02073590.1| hypothetical protein CLOL250_00331 [Clostridium sp. L2-50] gi|156865841|gb|EDO59272.1| hypothetical protein CLOL250_00331 [Clostridium sp. L2-50] Length = 413 Score = 39.8 bits (92), Expect = 0.85, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G + V++L+E+L I+ + P+ + AV+ FQ L + Sbjct: 329 PGYDLSIGATGDKVRQLQEQLNRIAQNYPSIPTVAADGIYGPATADAVRRFQQIFDLPVT 388 Query: 155 GMVDSSTLE 163 G+ D ST Sbjct: 389 GITDYSTWY 397 >gi|150018544|ref|YP_001310798.1| hypothetical protein Cbei_3725 [Clostridium beijerinckii NCIMB 8052] gi|149905009|gb|ABR35842.1| Domain of unknown function DUF1906 [Clostridium beijerinckii NCIMB 8052] Length = 714 Score = 39.8 bits (92), Expect = 0.85, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 102 LHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L LG++ + L+ L +G G + V++AV FQ GL+ G+ S Sbjct: 230 LSLGSTKTKFIYLLQFALYCNGKEFDPNGFDGGYGNGVKNAVTKFQSFCGLNADGIAGSQ 289 Query: 161 TLEAMNVPVDLRIRQ 175 T ++ V R+ Sbjct: 290 TFASLLVSTGDNTRK 304 >gi|294625916|ref|ZP_06704529.1| secreted protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599768|gb|EFF43892.1| secreted protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 335 Score = 39.8 bits (92), Expect = 0.86, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 G N + I+ + Y +H TPEP +V + E+ GCVR+ N + Sbjct: 272 PAGPNNPVGRVWIDLSKPH--YGLHGTPEPG---HVGKTESHGCVRLTNWDVVA 320 >gi|256847539|ref|ZP_05552985.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] gi|256716203|gb|EEU31178.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] Length = 460 Score = 39.8 bits (92), Expect = 0.86, Method: Composition-based stats. Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR--QTP 229 +G Y V+I ++GK + V+ G+ TP Sbjct: 329 NHGLGNTYAEVSIADQHAWFYKDGKEVFSADVVTGKQSSGDATP 372 >gi|297744706|emb|CBI37968.3| unnamed protein product [Vitis vinifera] Length = 131 Score = 39.8 bits (92), Expect = 0.88, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Query: 103 HLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLD 152 G+ +Q++++ L G L S+ + FD +ESA+K+FQ + L+ Sbjct: 20 KKGDKMEGIQKVKQYLQRYGYLSSTHYSQTNTDEFDDALESAIKVFQTFYHLN 72 >gi|147768132|emb|CAN60605.1| hypothetical protein VITISV_020064 [Vitis vinifera] Length = 149 Score = 39.8 bits (92), Expect = 0.88, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Query: 103 HLGNSSVSVQRLRERLIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLD 152 G+ +Q++++ L G L S+ + FD +ESA+K+FQ + L+ Sbjct: 38 KKGDKMEGIQKVKQYLQRYGYLSSTHYSQTNTDEFDDALESAIKVFQTFYHLN 90 >gi|116873286|ref|YP_850067.1| carboxy-terminal processing protease [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742164|emb|CAK21288.1| carboxy-terminal processing protease [Listeria welshimeri serovar 6b str. SLCC5334] Length = 496 Score = 39.8 bits (92), Expect = 0.88, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 408 STKVYKNGDFGDDVKTIETLLRALDY--NVGKVDGLYDTDTEYAVQRFQSANKLDVTGIM 465 Query: 158 DSSTLEAM 165 T + + Sbjct: 466 TGVTTDKL 473 >gi|927023|gb|AAA99948.1| senescence-specific protein [Cucumis sativus] Length = 126 Score = 39.8 bits (92), Expect = 0.88, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 6/57 (10%) Query: 103 HLGNSSVSVQRLRERLIISGDL------DPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 HLG++ + ++++ L G + + FD +ESA+K +Q H L Sbjct: 55 HLGDTKQGIHQIKKYLQRFGYITTNIQKHSNPIFDDTFDHILESALKTYQTNHNLAA 111 >gi|170746489|ref|YP_001752749.1| lytic murein transglycosylase [Methylobacterium radiotolerans JCM 2831] gi|170653011|gb|ACB22066.1| lytic murein transglycosylase [Methylobacterium radiotolerans JCM 2831] Length = 396 Score = 39.8 bits (92), Expect = 0.88, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 2/65 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 ++ L+ L +G D + AV+ +Q+ GL G + L+ + Sbjct: 333 GPGLRALQTGLAAAGFYDGPTDGRAG--PKLREAVRRYQISAGLPADGYATPALLDRVTG 390 Query: 168 PVDLR 172 R Sbjct: 391 KAAPR 395 >gi|317132365|ref|YP_004091679.1| ErfK/YbiS/YcfS/YnhG family protein [Ethanoligenens harbinense YUAN-3] gi|315470344|gb|ADU26948.1| ErfK/YbiS/YcfS/YnhG family protein [Ethanoligenens harbinense YUAN-3] Length = 235 Score = 39.8 bits (92), Expect = 0.89, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA-YVESAVKLFQMRHGLDPSGMVD 158 R + G V +++RL G D + +D+ AV F+ GL PS + Sbjct: 165 RTIGPGMYGQDVLAVQKRLHDLGYFDG--ICNGRYDSWGFHQAVLRFEKDRGLPPSDRIA 222 Query: 159 SSTLEAM 165 S+ +A+ Sbjct: 223 SAFYKAL 229 >gi|213625068|gb|AAI69744.1| MT3-MMP protein [Xenopus laevis] Length = 608 Score = 39.8 bits (92), Expect = 0.89, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P+ ++SA+ Q +G++ +G +D +T++ M P Sbjct: 46 LQKYGYLPPTDPRMSVLRSSETMQSAIAAMQQFYGINVTGKIDKNTIDWMKKP 98 >gi|160700680|ref|YP_001552360.1| gp31 [Mycobacterium phage Giles] gi|159136630|gb|ABW88426.1| gp31 [Mycobacterium phage Giles] Length = 402 Score = 39.8 bits (92), Expect = 0.89, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 LH G S +V +L+ L + F + E+ V+ Q +GLD G+V T Sbjct: 338 LHRGMSGPNVVKLQTTLRRW---YSKLAVDGDFGPHTEACVRDRQRIYGLDVDGIVGPLT 394 Query: 162 LE 163 Sbjct: 395 AA 396 >gi|332711185|ref|ZP_08431118.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332349999|gb|EGJ29606.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 114 Score = 39.8 bits (92), Expect = 0.90, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 11/73 (15%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG---------LD 152 L G + +V+ L++ LI +D S L F + E AV+ FQ + L Sbjct: 39 LKKGTAGEAVRFLQQFLIC--YIDYSVLLDGQFGSQTERAVRDFQSYYNSLQKSNPDYLI 96 Query: 153 PSGMVDSSTLEAM 165 G+V T A+ Sbjct: 97 VDGIVGKETYRAI 109 >gi|294665945|ref|ZP_06731210.1| secreted protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604300|gb|EFF47686.1| secreted protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 335 Score = 39.8 bits (92), Expect = 0.90, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 G N + I+ + Y +H TPEP +V + E+ GCVR+ N + Sbjct: 272 PAGPNNPVGRVWIDLSKPH--YGLHGTPEPG---HVGKTESHGCVRLTNWDVVA 320 >gi|77748712|ref|NP_643674.2| hypothetical protein XAC3367 [Xanthomonas axonopodis pv. citri str. 306] Length = 328 Score = 39.8 bits (92), Expect = 0.90, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 G N + I+ + Y +H TPEP +V + E+ GCVR+ N + Sbjct: 265 PAGPNNPVGRVWIDLSKPH--YGLHGTPEPG---HVGKTESHGCVRLTNWDVVA 313 >gi|315646088|ref|ZP_07899208.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus vortex V453] gi|315278287|gb|EFU41603.1| ErfK/YbiS/YcfS/YnhG family protein [Paenibacillus vortex V453] Length = 112 Score = 39.8 bits (92), Expect = 0.91, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 47/168 (27%), Gaps = 68/168 (40%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 M ++V++ L ++ V + VG++ QTP Sbjct: 1 MPKYRIIVDVGNYQLHLLDGDAVVHTYPIAVGKMATQTP--------------------- 39 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 P N ++ ++ W P++ Sbjct: 40 ------------PG-----NYTIVTKEPNPGGPFGAYWLGLSKPHYG------------- 69 Query: 311 TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWL 356 +H T +P ++ R + GC+R+ +++ L + Sbjct: 70 ------------IHGTNDPS---SIGRSVSHGCIRMYNEDVVQLASLV 102 >gi|311068995|ref|YP_003973918.1| hypothetical protein BATR1942_10280 [Bacillus atrophaeus 1942] gi|310869512|gb|ADP32987.1| hypothetical protein BATR1942_10280 [Bacillus atrophaeus 1942] Length = 176 Score = 39.8 bits (92), Expect = 0.91, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 60/209 (28%), Gaps = 68/209 (32%) Query: 191 MGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSI 250 G YV++N + L + + +V V G+ D TP I NP Sbjct: 24 PGDPYVIINKASNQLAYIVDNQVEGIYQVATGKTDDLTPEGEFSITVKAANP-------- 75 Query: 251 IQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMAS 310 Y + NI G W + G Sbjct: 76 --------------YYRKKNIE----GGAPENPLGARWIGFDAE--------GTD---GR 106 Query: 311 TKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN----------IIDLDVWLLKD 359 Y +H T L F ++GC+R+ N + V + KD Sbjct: 107 ----------IYGIHGTNRDELIGE---FVSNGCIRMHNQEVIHLFDSIPLGTKVLITKD 153 Query: 360 TPTWSRYHIEEVVKTRKTTPVKLATEVPV 388 + ++ IE T+K +VPV Sbjct: 154 SRSFEDIAIEHKALTKK-------QDVPV 175 >gi|296136686|ref|YP_003643928.1| Peptidoglycan-binding domain 1 protein [Thiomonas intermedia K12] gi|295796808|gb|ADG31598.1| Peptidoglycan-binding domain 1 protein [Thiomonas intermedia K12] Length = 343 Score = 39.8 bits (92), Expect = 0.91, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 6/79 (7%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRE---RLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 +GG +P+ ++ + L++ +L G P + +K FQ Sbjct: 267 QGG-STPAAQPVAATQTAPATMTLKQAQEKLNAQGF--PVGTPDGVMGPRTRAELKRFQN 323 Query: 148 RHGLDPSGMVDSSTLEAMN 166 GL SG++D +T+ A N Sbjct: 324 SRGLPESGVLDQATIAAFN 342 >gi|255018611|ref|ZP_05290737.1| hypothetical protein LmonF_14491 [Listeria monocytogenes FSL F2-515] Length = 237 Score = 39.8 bits (92), Expect = 0.91, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 149 STKVYKNGDFGDDVKTIETLLKALDY--NVGKVDGLYDTDTEYAVQRFQTANKLDVTGIM 206 Query: 158 DSSTLEAM 165 T + + Sbjct: 207 TGVTTDKL 214 >gi|224500081|ref|ZP_03668430.1| hypothetical protein LmonF1_10539 [Listeria monocytogenes Finland 1988] Length = 496 Score = 39.8 bits (92), Expect = 0.91, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 408 STKVYKNGDFGDDVKTIETLLKALDY--NVGKVDGLYDTDTEYAVQRFQTANKLDVTGIM 465 Query: 158 DSSTLEAM 165 T + + Sbjct: 466 TGVTTDKL 473 >gi|16803891|ref|NP_465376.1| hypothetical protein lmo1851 [Listeria monocytogenes EGD-e] gi|224501349|ref|ZP_03669656.1| hypothetical protein LmonFR_02300 [Listeria monocytogenes FSL R2-561] gi|254829153|ref|ZP_05233840.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254831548|ref|ZP_05236203.1| hypothetical protein Lmon1_09343 [Listeria monocytogenes 10403S] gi|254899452|ref|ZP_05259376.1| hypothetical protein LmonJ_06549 [Listeria monocytogenes J0161] gi|254912409|ref|ZP_05262421.1| carboxyl-terminal protease [Listeria monocytogenes J2818] gi|254936736|ref|ZP_05268433.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|255025442|ref|ZP_05297428.1| hypothetical protein LmonocytFSL_02284 [Listeria monocytogenes FSL J2-003] gi|16411305|emb|CAC99929.1| lmo1851 [Listeria monocytogenes EGD-e] gi|258601563|gb|EEW14888.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258609333|gb|EEW21941.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|293590391|gb|EFF98725.1| carboxyl-terminal protease [Listeria monocytogenes J2818] Length = 496 Score = 39.8 bits (92), Expect = 0.91, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 408 STKVYKNGDFGDDVKTIETLLKALDY--NVGKVDGLYDTDTEYAVQRFQTANKLDVTGIM 465 Query: 158 DSSTLEAM 165 T + + Sbjct: 466 TGVTTDKL 473 >gi|332019904|gb|EGI60365.1| Matrix metalloproteinase-14 [Acromyrmex echinatior] Length = 513 Score = 39.8 bits (92), Expect = 0.92, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 13/80 (16%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP------- 168 L G L P + AF +A + +A++ FQ GL+ +G ++ T + M P Sbjct: 46 LAQYGYLPPINPENGAFLSEAKLTAAIEEFQAFAGLNITGELNEETAKLMATPRCGVKDK 105 Query: 169 ----VDLRIRQLQVNLMRIK 184 D R ++ + R + Sbjct: 106 VGPAADGRSKRYALQGSRWR 125 >gi|310825691|ref|YP_003958048.1| muramoyl-pentapeptide carboxypeptidase [Eubacterium limosum KIST612] gi|308737425|gb|ADO35085.1| muramoyl-pentapeptide carboxypeptidase [Eubacterium limosum KIST612] Length = 244 Score = 39.8 bits (92), Expect = 0.92, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 3/55 (5%) Query: 127 SKGLSVAFD-AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 + G +D ++AV+ Q + ++ G+ T E + +R Q Q+N Sbjct: 18 APGTVDGYDGPETQAAVRRTQEGYDIEADGIAGPVTKEHL--SKQVRGIQAQLNA 70 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 9/95 (9%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 ET A + Y DI + G P+ + S V+ ++ +L G P GL Sbjct: 27 GPETQAAVRRTQEGY-DIEADG-----IAGPVTKEHLSKQVRGIQAQLNAKGCGCPVDGL 80 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++AVK Q GL G+V +T A+ Sbjct: 81 PG---PLTDAAVKTLQADFGLVADGIVGYNTEAAL 112 >gi|47214887|emb|CAG01018.1| unnamed protein product [Tetraodon nigroviridis] Length = 256 Score = 39.8 bits (92), Expect = 0.93, Method: Composition-based stats. Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 4/47 (8%) Query: 122 GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 GD D +G S AF SA++ FQ GL +G D +T EAMN P Sbjct: 3 GDGDDPEGASQAF----ISALEEFQRVSGLPVTGQFDEATKEAMNKP 45 >gi|313885622|ref|ZP_07819372.1| ErfK/YbiS/YcfS/YnhG [Eremococcus coleocola ACS-139-V-Col8] gi|312619352|gb|EFR30791.1| ErfK/YbiS/YcfS/YnhG [Eremococcus coleocola ACS-139-V-Col8] Length = 458 Score = 39.8 bits (92), Expect = 0.94, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 14/83 (16%) Query: 159 SSTLEAMNVPVDLRIRQLQVNLMRIKKLLE-------------QKMGLRYVLVNIPAASL 205 TL ++ + QL +L K + +G YV +++ ++ Sbjct: 287 PGTLGW-SIDSESEAAQLAADLEAGKDVSREPAIVGTGYGSTGDDIGSTYVEIDMANQTM 345 Query: 206 EAVENGKVGLRSTVIVGRVDRQT 228 ++G++ L + ++ GRV T Sbjct: 346 FIYKDGQIVLETPIVTGRVGTDT 368 >gi|326203788|ref|ZP_08193650.1| peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Clostridium papyrosolvens DSM 2782] gi|325985886|gb|EGD46720.1| peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Clostridium papyrosolvens DSM 2782] Length = 232 Score = 39.8 bits (92), Expect = 0.94, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 10/20 (50%) Query: 142 VKLFQMRHGLDPSGMVDSST 161 VK FQ GL G++ T Sbjct: 151 VKEFQSMTGLTADGVIGPKT 170 >gi|227872274|ref|ZP_03990633.1| ErfK family protein [Oribacterium sinus F0268] gi|227841886|gb|EEJ52157.1| ErfK family protein [Oribacterium sinus F0268] Length = 438 Score = 39.8 bits (92), Expect = 0.94, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQ--TP 229 +G YV V+I + VENG++ L S + G V R TP Sbjct: 312 ASDLGNTYVEVDIAKQKMFYVENGEIKLSSDCVTGNVSRNNGTP 355 >gi|255524547|ref|ZP_05391501.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium carboxidivorans P7] gi|296185805|ref|ZP_06854212.1| hypothetical protein CLCAR_1244 [Clostridium carboxidivorans P7] gi|255511700|gb|EET87986.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium carboxidivorans P7] gi|296049633|gb|EFG89060.1| hypothetical protein CLCAR_1244 [Clostridium carboxidivorans P7] Length = 466 Score = 39.8 bits (92), Expect = 0.94, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 20/39 (51%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 E ++G YV VNI L +NG++ ++ G +R Sbjct: 337 EDEIGKTYVEVNITRQHLWFYKNGRLISEGDIVTGDPNR 375 >gi|240849841|ref|YP_002971229.1| membrane-bound lytic murein transglycosylase [Bartonella grahamii as4aup] gi|240266964|gb|ACS50552.1| membrane-bound lytic murein transglycosylase [Bartonella grahamii as4aup] Length = 418 Score = 39.8 bits (92), Expect = 0.94, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 + L+ RL G + + + A+K FQ+RHGL +G Sbjct: 364 KELQSRLSALGYYKGNVDGKIGTASR--KAIKAFQLRHGLKANG 405 >gi|255527321|ref|ZP_05394199.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium carboxidivorans P7] gi|296184916|ref|ZP_06853327.1| ErfK/YbiS/YcfS/YnhG [Clostridium carboxidivorans P7] gi|255508968|gb|EET85330.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium carboxidivorans P7] gi|296050698|gb|EFG90121.1| ErfK/YbiS/YcfS/YnhG [Clostridium carboxidivorans P7] Length = 233 Score = 39.8 bits (92), Expect = 0.95, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 +R L G + V +L+ L G + + ++ Y +S V FQ + L Sbjct: 163 LRTLKPGMTGSDVYQLQFMLRTKGYYNSKP--NGIYNDYFKSVVHKFQKDNSLP 214 >gi|153810701|ref|ZP_01963369.1| hypothetical protein RUMOBE_01085 [Ruminococcus obeum ATCC 29174] gi|149833097|gb|EDM88179.1| hypothetical protein RUMOBE_01085 [Ruminococcus obeum ATCC 29174] Length = 501 Score = 39.8 bits (92), Expect = 0.95, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 5/73 (6%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY----VESAVKLFQMRHGLD 152 + + G+ V+ L +RL+ S G ++ D A+K +Q + GL Sbjct: 427 FSVGNVQNGSKGNDVKLL-QRLLKSNGFKGKDGKNLTIDGECGTNTVYAIKTYQTKKGLS 485 Query: 153 PSGMVDSSTLEAM 165 G +T +++ Sbjct: 486 VDGCAGPATWKSI 498 >gi|21109718|gb|AAM38210.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 215 Score = 39.8 bits (92), Expect = 0.95, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 G N + I+ + Y +H TPEP +V + E+ GCVR+ N + Sbjct: 152 PAGPNNPVGRVWIDLSKPH--YGLHGTPEPG---HVGKTESHGCVRLTNWDVVA 200 >gi|327393217|dbj|BAK10639.1| protein YbiS precursor [Pantoea ananatis AJ13355] Length = 380 Score = 39.8 bits (92), Expect = 0.96, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 50/187 (26%), Gaps = 44/187 (23%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFN 241 ++LL +++N L G K + + +G + + TP+ + + R Sbjct: 89 QQLLLPDAPREGIVINSAEMRLYYYPKGTKTVVVLPIGIGELGKDTPLNWTTTVQRKKDG 148 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W +Y N Sbjct: 149 PTWT-----------PTKAMHAEYASR------------------------GENLPAVFP 173 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 G N M + H T F +R + GCVR+ D+ WL P Sbjct: 174 AGPDNPMGLYALYIGRLYAI--HGTNAN--FGIGLR-VSHGCVRL-RADDI-KWLFDHVP 226 Query: 362 TWSRYHI 368 +R Sbjct: 227 VGTRVQF 233 >gi|291616791|ref|YP_003519533.1| YbiS [Pantoea ananatis LMG 20103] gi|291151821|gb|ADD76405.1| YbiS [Pantoea ananatis LMG 20103] Length = 380 Score = 39.8 bits (92), Expect = 0.96, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 50/187 (26%), Gaps = 44/187 (23%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENG-KVGLRSTVIVGRVDRQTPI-LHSRINRIMFN 241 ++LL +++N L G K + + +G + + TP+ + + R Sbjct: 89 QQLLLPDAPREGIVINSAEMRLYYYPKGTKTVVVLPIGIGELGKDTPLNWTTTVQRKKDG 148 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W +Y N Sbjct: 149 PTWT-----------PTKAMHAEYASR------------------------GENLPAVFP 173 Query: 302 PGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTP 361 G N M + H T F +R + GCVR+ D+ WL P Sbjct: 174 AGPDNPMGLYALYIGRLYAI--HGTNAN--FGIGLR-VSHGCVRL-RADDI-KWLFDHVP 226 Query: 362 TWSRYHI 368 +R Sbjct: 227 VGTRVQF 233 >gi|303290915|ref|XP_003064744.1| predicted protein [Micromonas pusilla CCMP1545] gi|226453770|gb|EEH51078.1| predicted protein [Micromonas pusilla CCMP1545] Length = 130 Score = 39.8 bits (92), Expect = 0.96, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 7/83 (8%) Query: 85 YQDILSRGG-WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF-DAYVESAV 142 Y I G WP L L + + V +L+ L G + + + + E+A+ Sbjct: 4 YPQIAGEGKRWPV-----LRLDDGGLEVHKLQVLLDDLGYYSGEEDMQYWYFGSTTENAL 58 Query: 143 KLFQMRHGLDPSGMVDSSTLEAM 165 FQ GL +G+ +T A+ Sbjct: 59 GTFQASTGLPDTGLTCVNTWRAL 81 >gi|222151317|ref|YP_002560473.1| hypothetical protein MCCL_1070 [Macrococcus caseolyticus JCSC5402] gi|222120442|dbj|BAH17777.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 469 Score = 39.8 bits (92), Expect = 0.96, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV-DSS 160 L L S V+ + L G + FD AV+ FQM + L G++ + Sbjct: 383 LTLNVKSTKVKSMEMGLKALGF--DPGKVDNTFDESTLYAVQSFQMENNLTVDGIMTGKT 440 Query: 161 TLEAM 165 T + M Sbjct: 441 TDKFM 445 >gi|210615974|ref|ZP_03290874.1| hypothetical protein CLONEX_03093 [Clostridium nexile DSM 1787] gi|210149979|gb|EEA80988.1| hypothetical protein CLONEX_03093 [Clostridium nexile DSM 1787] Length = 421 Score = 39.8 bits (92), Expect = 0.97, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G+S V++++E+L +I+G P + + ++V+ FQ GL + Sbjct: 337 PGYTLSNGSSGDKVRQMQEQLNVIAGAYPAIPKVAVDGIYGPATAASVRKFQSVFGLPET 396 Query: 155 GMVDSSTLE 163 G VD T Sbjct: 397 GTVDYRTWY 405 >gi|297458750|ref|XP_616761.4| PREDICTED: matrix metallopeptidase 24 (membrane-inserted) [Bos taurus] Length = 568 Score = 39.4 bits (91), Expect = 0.98, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P S A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 8 LKSYGYLLPYDSRSSALHSGKALQSAVATMQQFYGIPVTGVLDQTTIEWMKKP 60 >gi|291237328|ref|XP_002738587.1| PREDICTED: matrix metalloproteinase 19 isoform rasi-1 preproprotein-like [Saccoglossus kowalevskii] Length = 525 Score = 39.4 bits (91), Expect = 0.98, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 21/51 (41%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L K D +AV+ FQ L+ +G +D T+ M P Sbjct: 48 LEKFGYLKKLKEGVQHDDKSTNAAVRAFQRMANLEETGNMDEKTIAMMQAP 98 >gi|254420236|ref|ZP_05033960.1| N-acetylmuramoyl-L-alanine amidase domain protein [Brevundimonas sp. BAL3] gi|196186413|gb|EDX81389.1| N-acetylmuramoyl-L-alanine amidase domain protein [Brevundimonas sp. BAL3] Length = 253 Score = 39.4 bits (91), Expect = 0.98, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 6/66 (9%) Query: 102 LHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDS 159 L G+ + LR L G L P +DA E+ V+ FQ D G+ D Sbjct: 175 LQKGDQGIGAVVLRAGLHRLGYGLTPGGD----YDAETETTVRAFQRHWRPDRIDGVADG 230 Query: 160 STLEAM 165 T + Sbjct: 231 ETRARL 236 >gi|325263845|ref|ZP_08130578.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Clostridium sp. D5] gi|324030883|gb|EGB92165.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Clostridium sp. D5] Length = 529 Score = 39.4 bits (91), Expect = 0.99, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG--RVDRQTP 229 G Y V++ A + + NG V L + V+ G +++TP Sbjct: 394 PADWGNTYAEVDLSAQHMWYIVNGAVALETDVVTGLPTPEKETP 437 >gi|17546650|ref|NP_520052.1| phage-related protein (hydrolase) [Ralstonia solanacearum GMI1000] gi|17428949|emb|CAD15633.1| putative phage-related protein (hydrolase) [Ralstonia solanacearum GMI1000] Length = 268 Score = 39.4 bits (91), Expect = 0.99, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ V+ L+ L G S + +DA +AV+ Q L G+ T Sbjct: 4 LKPGSTGAEVRELQRLLAGRGF---SAADTGEYDAATAAAVRAAQACFDLVVDGIAGPKT 60 Query: 162 LEAMNVPVDLRIRQLQVNLMR 182 ++A+ V +L R Sbjct: 61 VQALRVGARQPGHLTAADLQR 81 >gi|27375875|ref|NP_767404.1| hypothetical protein bll0764 [Bradyrhizobium japonicum USDA 110] gi|27349013|dbj|BAC46029.1| bll0764 [Bradyrhizobium japonicum USDA 110] Length = 468 Score = 39.4 bits (91), Expect = 0.99, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 6/88 (6%) Query: 95 PELPIRP--LHLGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMR 148 +PIRP L + + ERL + DL + ++ + +A+K +Q Sbjct: 50 QTVPIRPPALQTPSETADAMAQAERLSLQSDLAWVGQYNGAITGEVSERMVNAIKEYQKN 109 Query: 149 HGLDPSGMVDSSTLEAMNVPVDLRIRQL 176 G P+G+++ A+ + + Sbjct: 110 KGGKPTGVLNPQERAALAETARRKQDSV 137 >gi|325130145|gb|EGC52924.1| hypothetical protein NMBOX9930304_1068 [Neisseria meningitidis OX99.30304] gi|325202202|gb|ADY97656.1| conserved hypothetical protein [Neisseria meningitidis M01-240149] gi|325208044|gb|ADZ03496.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33] Length = 167 Score = 39.4 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Query: 126 PSKGLSVAFDAYVE----SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 P FDA V +AV++ Q G+ G++ +L+A+N + + L+ N Sbjct: 74 PEAVAFQFFDACVNHGYGNAVRMLQRAAGVADDGIIGEISLKAINSLPENDL-LLRFNAE 132 Query: 182 RI 183 R+ Sbjct: 133 RL 134 >gi|301762074|ref|XP_002916480.1| PREDICTED: matrix metalloproteinase-24-like [Ailuropoda melanoleuca] Length = 630 Score = 39.4 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 RL L G L PS + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 65 RLANWLKSYGYLLPSDSRAPALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 122 >gi|254465328|ref|ZP_05078739.1| lytic murein transglycosylase [Rhodobacterales bacterium Y4I] gi|206686236|gb|EDZ46718.1| lytic murein transglycosylase [Rhodobacterales bacterium Y4I] Length = 443 Score = 39.4 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 7/75 (9%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 RG WP R L + L++RL +G ++G+ AV+ +Q+ +G Sbjct: 375 RGDWPR-SDRALTRSER----EELQQRLTAAGF--DTEGVDGRIGPKTIGAVRAYQVANG 427 Query: 151 LDPSGMVDSSTLEAM 165 L G L+ + Sbjct: 428 LTADGYASPRLLQRL 442 >gi|197105879|ref|YP_002131256.1| hypothetical protein PHZ_c2418 [Phenylobacterium zucineum HLK1] gi|196479299|gb|ACG78827.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 213 Score = 39.4 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 VQR++ LII G DP + + A++ FQ GL +G +D TL A+ V Sbjct: 157 VQRVQIALIIKGY-DPGPANG-VLSSKTKEALRAFQAATGLTATGAMDMDTLNALGV 211 >gi|145708088|ref|YP_001165263.1| hypothetical protein RPRSA1_gp14 [Ralstonia phage phiRSA1] gi|139003877|dbj|BAF52391.1| phage-related protein [Ralstonia phage phiRSA1] Length = 268 Score = 39.4 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 3/81 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ V+ L+ L G S + +DA +AV+ Q L G+ T Sbjct: 4 LKPGSTGAEVRELQRLLAGRGF---SAADTGEYDAATAAAVRAAQACFDLVVDGIAGPKT 60 Query: 162 LEAMNVPVDLRIRQLQVNLMR 182 ++A+ V +L R Sbjct: 61 VQALRVGARQPGHLTAADLQR 81 >gi|110346929|ref|YP_665747.1| ErfK/YbiS/YcfS/YnhG [Mesorhizobium sp. BNC1] gi|110283040|gb|ABG61100.1| ErfK/YbiS/YcfS/YnhG [Chelativorans sp. BNC1] Length = 184 Score = 39.4 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 56/170 (32%), Gaps = 42/170 (24%) Query: 184 KKLLEQKMGLRY--VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFN 241 ++L++ G R V+V+ + L V G +R V +GR T I Sbjct: 26 RQLVDDPTGERPGTVVVDTRSYFLYLVRPGGKAMRYGVGLGRQGF-TWSGDGVIQWKQRW 84 Query: 242 PYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQD 301 P W P +M+A E W++ Q Sbjct: 85 PKWTPPA-----EMIAR-----------------------QPELEKWSADNGG-----QP 111 Query: 302 PGKINAMA-STKIEFYS-RNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 PG N + F + + Y +H TPE +SGCVR+ N Sbjct: 112 PGLNNPLGARALYIFQNGEDTLYRLHGTPEYWTIGK---AVSSGCVRLMN 158 >gi|119385237|ref|YP_916293.1| lytic murein transglycosylase [Paracoccus denitrificans PD1222] gi|119375004|gb|ABL70597.1| lytic murein transglycosylase [Paracoccus denitrificans PD1222] Length = 417 Score = 39.4 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 15/95 (15%) Query: 74 TIAQTEKAIAFYQDILSRGGWPELPIRPLHLGN---SSVSVQRLRERLIISGDLDPSKGL 130 +A +AIA + I +G WP G+ S+ ++ L+ G + G+ Sbjct: 333 AVAYLGEAIAGRRGI--QGNWPR--------GDRTLSNNEKAEIQRLLMARGF--DTGGV 380 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 A++ FQ G+ P G D+ L + Sbjct: 381 DGKLGGQSTEAIRAFQRSRGVTPDGYADTRLLAML 415 >gi|315925294|ref|ZP_07921506.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315621415|gb|EFV01384.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 663 Score = 39.4 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + + + V+ P +L+A NG+ L + VI GR TP Sbjct: 536 WMP--VSPTCICVDRPHQTLKAYVNGREILSTPVITGRPGMSTP 577 >gi|228993887|ref|ZP_04153790.1| Carboxyl-terminal protease [Bacillus pseudomycoides DSM 12442] gi|228765838|gb|EEM14489.1| Carboxyl-terminal protease [Bacillus pseudomycoides DSM 12442] Length = 494 Score = 39.4 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEMTGQLDK 462 Query: 160 STLEAMNVPVDLRIR------QLQVNL 180 T EA+ + +IR QLQ L Sbjct: 463 KTAEAIQNKIIEKIRSGENDLQLQAAL 489 >gi|228999923|ref|ZP_04159495.1| Carboxyl-terminal protease [Bacillus mycoides Rock3-17] gi|229007476|ref|ZP_04165073.1| Carboxyl-terminal protease [Bacillus mycoides Rock1-4] gi|228753864|gb|EEM03305.1| Carboxyl-terminal protease [Bacillus mycoides Rock1-4] gi|228759865|gb|EEM08839.1| Carboxyl-terminal protease [Bacillus mycoides Rock3-17] Length = 494 Score = 39.4 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 + L ++ V V+ +E L G + + F ESA+K FQ + ++ +G +D Sbjct: 405 KTLSYNSNDVQVKHAQEMLKSLGYVPGREDG--YFSKETESALKAFQNANEMEMTGQLDK 462 Query: 160 STLEAMNVPVDLRIR------QLQVNL 180 T EA+ + +IR QLQ L Sbjct: 463 KTAEAIQNKIIEKIRSGENDLQLQAAL 489 >gi|326677672|ref|XP_698601.5| PREDICTED: matrix metalloproteinase-17 [Danio rerio] Length = 588 Score = 39.4 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L PS ++ + A+K Q GL+ +G++D +TL M P Sbjct: 41 LSKFGYLPPSDPVNGQLQTKEALTKAIKAMQRFGGLEETGVLDQATLGLMKTP 93 >gi|197303250|ref|ZP_03168291.1| hypothetical protein RUMLAC_01973 [Ruminococcus lactaris ATCC 29176] gi|197297676|gb|EDY32235.1| hypothetical protein RUMLAC_01973 [Ruminococcus lactaris ATCC 29176] Length = 421 Score = 39.4 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPS---KGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G S V +++E+L + + P+ + AV+ FQ GL + Sbjct: 337 PGYTLEQGASGEKVLQMQEQLRVISEAYPAIPKVEADGIYGPATAQAVEKFQSVFGLPVT 396 Query: 155 GMVDSSTLE 163 G VD ST Sbjct: 397 GTVDYSTWY 405 >gi|160897406|ref|YP_001562988.1| hypothetical protein Daci_1963 [Delftia acidovorans SPH-1] gi|160362990|gb|ABX34603.1| protein of unknown function DUF847 [Delftia acidovorans SPH-1] Length = 168 Score = 39.4 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 6/86 (6%) Query: 119 IISGDLDPSKGLSVAFDAYVES----AVKLFQMRHGLDPSGMVDSSTLEAMNV--PVDLR 172 + D+ FD V + AVK+ Q+ G+ P G V TL A+N+ P Sbjct: 72 MRLDDVSSQVIARHLFDFGVNAGTGTAVKIAQVVAGVTPDGAVGPLTLAALNMADPELFS 131 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLV 198 R + R + ++ + L+ Sbjct: 132 ARYTIAKMARYRDIVTRDRSQSKFLL 157 >gi|254670722|emb|CBA06915.1| conserved hypothetical protein [Neisseria meningitidis alpha153] Length = 167 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Query: 126 PSKGLSVAFDAYVE----SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 P FDA V +AV++ Q G+ G++ +L+A+N + + L+ N Sbjct: 74 PEAVAFQFFDACVNHGYGNAVRMLQRAAGVADDGIIGEISLKAINSLPENDL-LLRFNAE 132 Query: 182 RI 183 R+ Sbjct: 133 RL 134 >gi|256389541|ref|YP_003111105.1| peptidoglycan-binding protein [Catenulispora acidiphila DSM 44928] gi|256355767|gb|ACU69264.1| Peptidoglycan-binding domain 1 protein [Catenulispora acidiphila DSM 44928] Length = 360 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 7/79 (8%) Query: 92 GGWPELPIRPL-----HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 G P LP PL H GN+ V+RL++ L ++ L+ + + FD AV +Q Sbjct: 277 GQVPNLPGGPLGGDKHHRGNNPADVKRLQQALAVA--LNTNLKATGQFDLDTFGAVVQYQ 334 Query: 147 MRHGLDPSGMVDSSTLEAM 165 + P G+V+ + A+ Sbjct: 335 GAMHMTPDGLVNGTVWAAL 353 >gi|161869922|ref|YP_001599091.1| hypothetical protein NMCC_0954 [Neisseria meningitidis 053442] gi|161595475|gb|ABX73135.1| conserved hypothetical protein [Neisseria meningitidis 053442] Length = 167 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Query: 126 PSKGLSVAFDAYVE----SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 P FDA V +AV++ Q G+ G++ +L+A+N + + L+ N Sbjct: 74 PEAVAFQFFDACVNHGYGNAVRMLQRAAGVADDGIIGEISLKAINSLPENDL-LLRFNAE 132 Query: 182 RI 183 R+ Sbjct: 133 RL 134 >gi|302833708|ref|XP_002948417.1| hypothetical protein VOLCADRAFT_103883 [Volvox carteri f. nagariensis] gi|300266104|gb|EFJ50292.1| hypothetical protein VOLCADRAFT_103883 [Volvox carteri f. nagariensis] Length = 488 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 2/73 (2%) Query: 95 PELPIRPLHLGNSSVS-VQRLRERLIISGDLDPSKGLSVAF-DAYVESAVKLFQMRHGLD 152 P P L G+ + + RL L G + F +AV FQ L Sbjct: 234 PTDPPPELVQGDDDIYWLSRLHTCLEQRGFFPGDDDMENWFFGEGTLAAVLSFQASERLP 293 Query: 153 PSGMVDSSTLEAM 165 +G+VD T A+ Sbjct: 294 ETGVVDRPTWTAL 306 >gi|254787848|ref|YP_003075277.1| N-acetylmuramidase [Teredinibacter turnerae T7901] gi|237687399|gb|ACR14663.1| N-acetylmuramidase [Teredinibacter turnerae T7901] Length = 177 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 24/107 (22%) Query: 83 AFYQDILSR-----GGWPELPIRPLHLG-----NSSVSVQRLRERLIISGDLDPSKGLSV 132 Y+ I GW + + G +Q L L D +G + Sbjct: 28 ETYKGIARNRNSKWQGWIAVDLLKKQRGFPANLEDDPQLQALVHELYELNYWDKIRGDDI 87 Query: 133 AFDAYVESAVKLF-------------QMRHGLDPSGMVDSSTLEAMN 166 D + ++ F Q+ G G++ TLE +N Sbjct: 88 V-DQDIADSIFDFAVNAGPATSSKLAQLAVGATADGVIGEKTLEKLN 133 >gi|197303997|ref|ZP_03169029.1| hypothetical protein RUMLAC_02734 [Ruminococcus lactaris ATCC 29176] gi|197296965|gb|EDY31533.1| hypothetical protein RUMLAC_02734 [Ruminococcus lactaris ATCC 29176] Length = 495 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPI 230 G Y V++ + V +G++ + + ++ G RQTP Sbjct: 361 ASDWGTTYAEVDLTNQKMWYVRDGQILMSTDIVTGLPTRARQTPE 405 >gi|291005214|ref|ZP_06563187.1| hypothetical protein SeryN2_11892 [Saccharopolyspora erythraea NRRL 2338] Length = 131 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 6/75 (8%) Query: 94 WPELPIRP----LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 W LP L G++ V L+ L + F ++ V FQ Sbjct: 38 WQALPSGSAMPVLQEGSTGGVVWDLQRTLNTL--IVAGLVQDGIFGPLTKAKVVQFQQIS 95 Query: 150 GLDPSGMVDSSTLEA 164 + P G+V T A Sbjct: 96 SIAPDGIVGDRTWRA 110 >gi|326669661|ref|XP_002662954.2| PREDICTED: matrix metalloproteinase-15-like [Danio rerio] Length = 655 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 7/94 (7%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L + + + +A+ Q +GL+ +G +D T+EAM P D Sbjct: 43 LRMYGYLPQASRQMSTMRSAQILSNAISDMQRFYGLEITGEMDPGTIEAMKRPRCGVPDK 102 Query: 172 RIRQLQVNLMRIKK-LLEQKMGLRYVLVNIPAAS 204 Q++ N+ R + L K ++ +I + Sbjct: 103 FGAQIKTNVRRKRYALTGHKWDKTHITFSIQNYT 136 >gi|293606325|ref|ZP_06688686.1| type III effector HopAJ2 [Achromobacter piechaudii ATCC 43553] gi|292815320|gb|EFF74440.1| type III effector HopAJ2 [Achromobacter piechaudii ATCC 43553] Length = 529 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 11/84 (13%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 WP G S +++L+E L G D+ + G+ A AV+ Q R L Sbjct: 451 WPTDD-----PGLSRAEIKQLQEELYGRGYDVGEADGIPG---AKTRDAVRAEQERRNLP 502 Query: 153 PSGMVDSSTLEAM--NVPVDLRIR 174 G V L+A+ + P LR R Sbjct: 503 QDGRVGKRILDALKADKPDALRAR 526 >gi|285808350|gb|ADC35879.1| hypothetical protein [uncultured bacterium 246] Length = 97 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 107 SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 ++ + ++ L G +DA +A++ FQ +G++ +G +DS +L +N Sbjct: 7 TAERYREIQSALAKEGYFQGPADG--VWDASSVAALQKFQQENGIEATGKIDSLSLIKLN 64 Query: 167 VPVD 170 + Sbjct: 65 LGPK 68 >gi|260203261|ref|ZP_05770752.1| hypothetical protein MtubK8_02950 [Mycobacterium tuberculosis K85] gi|289572696|ref|ZP_06452923.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289537127|gb|EFD41705.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] Length = 251 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 18/73 (24%) Query: 176 LQVNLMRI---KKLLEQ--------------KMGLRYVLV-NIPAASLEAVENGKVGLRS 217 + N++R + + G + V +I A + NG+V Sbjct: 89 VASNVVRWVPHRYWPPHTRVSVGVQELTEGFETGDALIRVASISAHTFTVSRNGEVLRTM 148 Query: 218 TVIVGRVDRQTPI 230 +G+ R TPI Sbjct: 149 PASLGKPSRPTPI 161 >gi|254473464|ref|ZP_05086861.1| ErfK/YbiS/YcfS/YnhG [Pseudovibrio sp. JE062] gi|211957580|gb|EEA92783.1| ErfK/YbiS/YcfS/YnhG [Pseudovibrio sp. JE062] Length = 226 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 8/87 (9%) Query: 271 IHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA-STKIEFYS-RNNTY-MHDTP 327 I + K E+ PE F + PG N + F + ++ Y +H T Sbjct: 119 IQYKRQWPKWTPPAEMIARQPELEEFRYGMAPGIENPLGARALYLFQNGKDTLYRLHGTN 178 Query: 328 EPILFNNVVRFETSGCVRV--RNIIDL 352 E V +SGC+R+ +++IDL Sbjct: 179 EHWSIGKNV---SSGCIRLLNQDVIDL 202 >gi|15839497|ref|NP_334534.1| hypothetical protein MT0125 [Mycobacterium tuberculosis CDC1551] gi|13879605|gb|AAK44348.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] Length = 210 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 18/73 (24%) Query: 176 LQVNLMRI---KKLLEQ--------------KMGLRYVLV-NIPAASLEAVENGKVGLRS 217 + N++R + + G + V +I A + NG+V Sbjct: 48 VASNVVRWVPHRYWPPHTRVSVGVQELTEGFETGDALIGVASISAHTFTVSRNGEVLRTM 107 Query: 218 TVIVGRVDRQTPI 230 +G+ R TPI Sbjct: 108 PASLGKPSRPTPI 120 >gi|84684354|ref|ZP_01012255.1| hypothetical protein 1099457000260_RB2654_12054 [Maritimibacter alkaliphilus HTCC2654] gi|84667333|gb|EAQ13802.1| hypothetical protein RB2654_12054 [Rhodobacterales bacterium HTCC2654] Length = 548 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 10/103 (9%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 +++ L + G KG+ F +A++ +Q + +G + L M D R Sbjct: 299 QVQRNLALLG--HDPKGIDGIFGPATRAAIRSYQSANDFTVTGYLSRDMLARMTAQADDR 356 Query: 173 IRQLQV-NLMRIKKLLEQKMGLRYVLVNIP----AASLEAVEN 210 QL+ R + Q+ R I A L A + Sbjct: 357 AEQLEREAAERQAR---QEREDRRYWEQIGQGRDEAGLRAYLD 396 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 4/51 (7%) Query: 116 ERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 RL+ G D+ G F A++ FQ GL +G V T+ + Sbjct: 497 NRLVSLGFDIPEVDG---VFGPTARRAIRRFQSSRGLPVTGFVTQETMVRL 544 >gi|328553819|gb|AEB24311.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens TA208] gi|328911326|gb|AEB62922.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens LL3] Length = 292 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 4/62 (6%) Query: 103 HLGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 S V +++ L + G+ + +AV FQ +GL G+ Sbjct: 222 EPYTSGEKVYQVQNALAALYFYPEKGAANNGIDGIYGPKTANAVARFQSVNGLPSDGIYG 281 Query: 159 SS 160 + Sbjct: 282 PA 283 >gi|269126016|ref|YP_003299386.1| peptidoglycan-binding domain 1 protein [Thermomonospora curvata DSM 43183] gi|268310974|gb|ACY97348.1| Peptidoglycan-binding domain 1 protein [Thermomonospora curvata DSM 43183] Length = 366 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 17/37 (45%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F + SAV +Q GL G+V +T + M Sbjct: 280 SIDCMFGSQTASAVASWQAARGLAADGIVGPNTRDRM 316 >gi|145351115|ref|XP_001419931.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580164|gb|ABO98224.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 319 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 10/83 (12%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+S V L +RL G ++ D A++ +Q+ GL PSG +S+ Sbjct: 12 GDSGTDVS-LAQRL--LG--RDARRAHGVCDRETTEALRAWQISRGLKPSGFFGASSRAQ 66 Query: 165 MNVPVDLRIRQL---QVNLMRIK 184 M + + R R+L + L R+ Sbjct: 67 MAME-EERWRELGGGAL-LERLW 87 >gi|134103030|ref|YP_001108691.1| hypothetical protein SACE_6599 [Saccharopolyspora erythraea NRRL 2338] gi|133915653|emb|CAM05766.1| hypothetical protein SACE_6599 [Saccharopolyspora erythraea NRRL 2338] Length = 135 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 6/75 (8%) Query: 94 WPELPIRP----LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 W LP L G++ V L+ L + F ++ V FQ Sbjct: 42 WQALPSGSAMPVLQEGSTGGVVWDLQRTLNTL--IVAGLVQDGIFGPLTKAKVVQFQQIS 99 Query: 150 GLDPSGMVDSSTLEA 164 + P G+V T A Sbjct: 100 SIAPDGIVGDRTWRA 114 >gi|313623229|gb|EFR93479.1| carboxypeptidase family protein [Listeria innocua FSL J1-023] Length = 468 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 380 STKVYKNGDFGDDVKTIETLLKALDY--NVGKVDGLYDIDTEYAVQRFQAANNLDVTGIM 437 Query: 158 DSSTLEAM 165 T + + Sbjct: 438 TGVTTDKL 445 >gi|229829297|ref|ZP_04455366.1| hypothetical protein GCWU000342_01384 [Shuttleworthia satelles DSM 14600] gi|229792460|gb|EEP28574.1| hypothetical protein GCWU000342_01384 [Shuttleworthia satelles DSM 14600] Length = 553 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPI 230 +G YV VN+ A L ++GK + + V G+ + QT + Sbjct: 340 DDIGSSYVEVNLTAQHLFVYKDGKKVVDTAVTTGKPVNNHQTNV 383 >gi|16801031|ref|NP_471299.1| hypothetical protein lin1965 [Listeria innocua Clip11262] gi|16414466|emb|CAC97195.1| lin1965 [Listeria innocua Clip11262] gi|313618251|gb|EFR90316.1| carboxy- processing protease [Listeria innocua FSL S4-378] Length = 496 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + G+ V+ + L + +D E AV+ FQ + LD +G++ Sbjct: 408 STKVYKNGDFGDDVKTIETLLKALDY--NVGKVDGLYDIDTEYAVQRFQAANNLDVTGIM 465 Query: 158 DSSTLEAM 165 T + + Sbjct: 466 TGVTTDKL 473 >gi|187778003|ref|ZP_02994476.1| hypothetical protein CLOSPO_01595 [Clostridium sporogenes ATCC 15579] gi|187774931|gb|EDU38733.1| hypothetical protein CLOSPO_01595 [Clostridium sporogenes ATCC 15579] Length = 125 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 19/48 (39%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 +++N A +L N V V VG+ TP +I NP Sbjct: 17 RIVINTKAHTLTLFRNNNVYKTYKVAVGKPSTPTPKGTFKIINRAINP 64 >gi|260549740|ref|ZP_05823957.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter sp. RUH2624] gi|260407257|gb|EEX00733.1| ErfK/YbiS/YcfS/YnhG family protein [Acinetobacter sp. RUH2624] Length = 418 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 11/79 (13%) Query: 279 KEVFVEEVDWNSPEPPNF-------IFRQDPGKINAMASTKIEFYSRNNTYMHDTPEPIL 331 K V V W S P NF PG + + I S+ + +H TP P L Sbjct: 326 KVVGVARNPWYSYSPSNFVQGKNLKPLSLPPGPNAPVGNIWIGL-SKKSFGIHGTPNPSL 384 Query: 332 FNNVVRFETSGCVRVRNII 350 + + GC+R+ N Sbjct: 385 ISKTA---SHGCIRLTNWD 400 >gi|260184973|ref|ZP_05762447.1| hypothetical protein MtubCP_02827 [Mycobacterium tuberculosis CPHL_A] gi|289445646|ref|ZP_06435390.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A] gi|289418604|gb|EFD15805.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A] Length = 251 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 18/73 (24%) Query: 176 LQVNLMRI---KKLLEQ--------------KMGLRYVLV-NIPAASLEAVENGKVGLRS 217 + N++R + + G + V +I A + NG+V Sbjct: 89 VASNVVRWVPHRYWPPHTRVSVGVQELTEGFETGDALIGVASISAHTFTVSRNGEVLRTM 148 Query: 218 TVIVGRVDRQTPI 230 +G+ R TPI Sbjct: 149 PASLGKPSRPTPI 161 >gi|302876662|ref|YP_003845295.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|307687337|ref|ZP_07629783.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|302579519|gb|ADL53531.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] Length = 410 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P PL + + +V+ ++ L + L P ++ +D AV+ FQ + Sbjct: 328 PGSPLTIEDKGSNVRIIQGHLNKISEAYPLIPKVTVNGIYDLATAEAVRKFQNTFKASET 387 Query: 155 GMVDSSTLEAM 165 G+VD +T ++ Sbjct: 388 GIVDFATWYSI 398 >gi|153853328|ref|ZP_01994737.1| hypothetical protein DORLON_00724 [Dorea longicatena DSM 13814] gi|149754114|gb|EDM64045.1| hypothetical protein DORLON_00724 [Dorea longicatena DSM 13814] Length = 543 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTP 229 R +G Y VN+ + V++G + L + V+ G + TP Sbjct: 404 RAASHDGNDVGNTYAEVNLTTQHMYYVKDGHIALETDVVTGNPNKGNATP 453 >gi|302671205|ref|YP_003831165.1| YkuD domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302395678|gb|ADL34583.1| YkuD domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 211 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 9/67 (13%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG--RVDRQTP----ILHSRI--NRIM 239 Q + YV V+I ++ +G L S V+ G + TP + S+I ++ Sbjct: 86 SQDVPSTYVDVDIDNQTMNYYVDGVSVLSSAVVTGNTQNGNGTPRGVFFIDSKIPGKYLV 145 Query: 240 FNPYWVI 246 P W + Sbjct: 146 -GPTWNV 151 >gi|326203290|ref|ZP_08193155.1| carboxyl-terminal protease [Clostridium papyrosolvens DSM 2782] gi|325986548|gb|EGD47379.1| carboxyl-terminal protease [Clostridium papyrosolvens DSM 2782] Length = 488 Score = 39.4 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 22/41 (53%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 DA AVK FQ + L SG++D +T +N ++ ++ Sbjct: 434 DAKSVEAVKKFQKSNKLSSSGILDFATQRLLNTKINEIKQK 474 >gi|307946258|ref|ZP_07661593.1| secretion activator protein [Roseibium sp. TrichSKD4] gi|307769922|gb|EFO29148.1| secretion activator protein [Roseibium sp. TrichSKD4] Length = 271 Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 16/120 (13%) Query: 85 YQDILSRGGWPELPIRPLHLGNSSVSVQRL-RERL--IISGDLDPSKGLSVAFDAYVES- 140 Y R G+ + +R + + VQ + RE+ ++GD PS FD V S Sbjct: 39 YNAYRRRMGFAKRSVRQI----TDAEVQAIYREQYWKAVAGDELPSGVDYAVFDYGVNSG 94 Query: 141 ---AVKLFQMRHGLDPSGMVDSSTLEAMN--VPVDLRIRQLQVNLM---RIKKLLEQKMG 192 A+K Q G P G + + TL A+ P ++ + + R++ G Sbjct: 95 PRRAIKDLQRVVGAKPDGWIGAETLAAIQSMFPKEIVQKLCERRYQFVRRLRHWPTFGRG 154 >gi|125972839|ref|YP_001036749.1| ErfK/YbiS/YcfS/YnhG [Clostridium thermocellum ATCC 27405] gi|256005881|ref|ZP_05430828.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum DSM 2360] gi|125713064|gb|ABN51556.1| ErfK/YbiS/YcfS/YnhG [Clostridium thermocellum ATCC 27405] gi|255990150|gb|EEU00285.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum DSM 2360] gi|316940925|gb|ADU74959.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum DSM 1313] Length = 230 Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + L G+ V ++++ L G S F ++ +V FQ + + +G V Sbjct: 148 PFKELKSGDVGSDVLKVQKALKKLGYFH--DWPSGKFQDNLKKSVIKFQKDNKIKVTGTV 205 Query: 158 DSS 160 + S Sbjct: 206 NKS 208 >gi|156349373|ref|XP_001622031.1| hypothetical protein NEMVEDRAFT_v1g142824 [Nematostella vectensis] gi|156208428|gb|EDO29931.1| predicted protein [Nematostella vectensis] Length = 216 Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 24/40 (60%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 S + + VE+A+K FQ GL+ +G +D +T+ M +P Sbjct: 5 SNSRSGNQDVETAIKNFQRFAGLEVTGELDDATIAQMKMP 44 >gi|150388024|ref|YP_001318073.1| carboxyl-terminal protease [Alkaliphilus metalliredigens QYMF] gi|149947886|gb|ABR46414.1| carboxyl-terminal protease [Alkaliphilus metalliredigens QYMF] Length = 467 Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R +G+ V+ ++RL G K A+ FQ GL P G++D Sbjct: 370 TRKPQIGDEGSDVEGAQQRLKAMGY--TIKDPQGVMGESTYQAIYQFQEDAGLYPYGILD 427 Query: 159 SSTLEAM 165 ST A+ Sbjct: 428 FSTQGAL 434 >gi|152983342|ref|YP_001352705.1| hypothetical protein mma_1015 [Janthinobacterium sp. Marseille] gi|151283419|gb|ABR91829.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 199 Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 21/35 (60%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 + + A+K FQM GL +G + +STL A+ +P Sbjct: 163 NEDTKIALKRFQMIKGLPETGTMGTSTLNALGLPA 197 >gi|157278503|ref|NP_001098353.1| membrane-type matrix metalloproteinase [Oryzias latipes] gi|46359589|dbj|BAD15297.1| membrane-type matrix metalloproteinase [Oryzias latipes] Length = 658 Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L + + + AV Q +GL +G +D T+ AM P D Sbjct: 43 LRMYGYLPQASRQMSTMRSSQILSDAVSDMQRFYGLQVTGQMDPQTISAMKRPRCGVPDK 102 Query: 172 RIRQLQVNLMRIK 184 Q++ N+ R + Sbjct: 103 FGGQIKTNVRRKR 115 >gi|194207129|ref|XP_001495153.2| PREDICTED: matrix metalloproteinase 14 [Equus caballus] Length = 756 Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 8/99 (8%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRH 149 G W R G ++ L L G L P + + +A+ Q + Sbjct: 189 GPWRR-GSRRWRPGCGTLHKALLAW-LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFY 246 Query: 150 GLDPSGMVDSSTLEAMNVP----VDLRIRQLQVNLMRIK 184 GL +G D+ T++AM P D +++ N+ R + Sbjct: 247 GLQVTGKADADTMKAMRRPRCGVPDKFGAEIKANVRRKR 285 >gi|311696248|gb|ADP99121.1| peptidoglycan binding domain protein [marine bacterium HP15] Length = 416 Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 2/63 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++ L++ L G + SA++ FQ + L G S L A+ +P Sbjct: 356 ANIINLQKALQQRGYEPGNPDG--IMGPATRSAIRQFQAANNLVADGYPGESVLAALEIP 413 Query: 169 VDL 171 Sbjct: 414 AGQ 416 >gi|307946200|ref|ZP_07661535.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] gi|307769864|gb|EFO29090.1| peptidoglycan binding domain-containing protein [Roseibium sp. TrichSKD4] Length = 301 Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 3/65 (4%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG-LDPSGMVDSSTLEAMNV 167 + L+ L G S + A++ FQ H L G+ +T + Sbjct: 172 DDIATLQTSLKQVGF--DSGSIDGVLGDRTRDAIRAFQRSHPPLVVDGIAGPATRTRLQR 229 Query: 168 PVDLR 172 + R Sbjct: 230 QLAKR 234 >gi|224136290|ref|XP_002322292.1| predicted protein [Populus trichocarpa] gi|222869288|gb|EEF06419.1| predicted protein [Populus trichocarpa] Length = 376 Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPS-KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 H G + +L+ G + S + FD Y+ESA++ +Q L+ +G +D T Sbjct: 62 HAGKKYDGLAKLKHYFQYFGYIPNSLSNFTDDFDDYLESALRTYQQNFNLNVTGELDDQT 121 Query: 162 LEAMNVP 168 + + P Sbjct: 122 VNHVVRP 128 >gi|192289092|ref|YP_001989697.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rhodopseudomonas palustris TIE-1] gi|192282841|gb|ACE99221.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Rhodopseudomonas palustris TIE-1] Length = 464 Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 V+ +++RL G + F E A+ F+ +GL P+ VD +TL A+ Sbjct: 298 PLVEFVQQRLRALGYYEVGNIDGD-FAGRTEDALVTFKRHNGLPPTTDVDDATLRAL 353 >gi|35903119|ref|NP_919397.1| matrix metalloproteinase-14 [Danio rerio] gi|32251076|gb|AAP74483.1| membrane-type matrix metalloproteinase 1 alpha [Danio rerio] gi|124297207|gb|AAI31865.1| Matrix metalloproteinase 14 (membrane-inserted) alpha [Danio rerio] Length = 574 Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTL 162 G S V+ L G L P + A + + SA+ Q +GL +G +D +TL Sbjct: 25 GTSDKEVRPEAW-LQQYGYLPPGDVRAQAIRSPKSINSAISAMQKFYGLTVTGTMDPATL 83 Query: 163 EAMNVP 168 AM P Sbjct: 84 SAMQRP 89 >gi|308172494|ref|YP_003919199.1| hypothetical protein BAMF_0603 [Bacillus amyloliquefaciens DSM 7] gi|307605358|emb|CBI41729.1| Uncharacterized protein fadG [Bacillus amyloliquefaciens DSM 7] gi|328910596|gb|AEB62192.1| Uncharacterized protein fadG [Bacillus amyloliquefaciens LL3] Length = 761 Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 17/43 (39%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 FD + +A+ FQ L G+ T ++ V R+ Sbjct: 239 IFDENMRTALIDFQRFSALPADGVAGMQTWASLLVSKGDEDRK 281 >gi|213623846|gb|AAI70300.1| Matrix metalloproteinase 21 [Xenopus laevis] gi|213627655|gb|AAI70298.1| Matrix metalloproteinase 21 [Xenopus laevis] Length = 604 Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPE-LPIRPLHLGNSSVSVQRLRE-RLIISG 122 SD+ + E + ++ Q L++ GW + + P +S+ + L++ L+ G Sbjct: 32 SDLQPSAIEQAELVKDMLSA-QQFLAKYGWTQPVIWDP----SSTNENEPLKDFSLMQEG 86 Query: 123 DLDP-SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 +P + A+K FQ + L +G +D +T+ AMN P Sbjct: 87 VSNPRQEVAEPTKSPQFIDALKKFQKLNNLPVTGTLDDATINAMNKP 133 >gi|15607258|ref|NP_214630.1| hypothetical protein Rv0116c [Mycobacterium tuberculosis H37Rv] gi|31791294|ref|NP_853787.1| hypothetical protein Mb0120c [Mycobacterium bovis AF2122/97] gi|121636029|ref|YP_976252.1| hypothetical protein BCG_0150c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148659880|ref|YP_001281403.1| hypothetical protein MRA_0123 [Mycobacterium tuberculosis H37Ra] gi|148821308|ref|YP_001286062.1| hypothetical protein TBFG_10117 [Mycobacterium tuberculosis F11] gi|167967292|ref|ZP_02549569.1| hypothetical protein MtubH3_04342 [Mycobacterium tuberculosis H37Ra] gi|215406105|ref|ZP_03418286.1| hypothetical protein Mtub0_20941 [Mycobacterium tuberculosis 02_1987] gi|215413974|ref|ZP_03422636.1| hypothetical protein Mtub9_21588 [Mycobacterium tuberculosis 94_M4241A] gi|215425318|ref|ZP_03423237.1| hypothetical protein MtubT9_02601 [Mycobacterium tuberculosis T92] gi|215433034|ref|ZP_03430953.1| hypothetical protein MtubE_20814 [Mycobacterium tuberculosis EAS054] gi|215448393|ref|ZP_03435145.1| hypothetical protein MtubT_21523 [Mycobacterium tuberculosis T85] gi|218755845|ref|ZP_03534641.1| hypothetical protein MtubG1_21489 [Mycobacterium tuberculosis GM 1503] gi|219555903|ref|ZP_03534979.1| hypothetical protein MtubT1_00825 [Mycobacterium tuberculosis T17] gi|224988502|ref|YP_002643189.1| hypothetical protein JTY_0120 [Mycobacterium bovis BCG str. Tokyo 172] gi|253797034|ref|YP_003030035.1| hypothetical protein TBMG_00117 [Mycobacterium tuberculosis KZN 1435] gi|254233508|ref|ZP_04926834.1| hypothetical protein TBCG_00116 [Mycobacterium tuberculosis C] gi|254366570|ref|ZP_04982614.1| conserved membrane protein [Mycobacterium tuberculosis str. Haarlem] gi|254549051|ref|ZP_05139498.1| hypothetical protein Mtube_01066 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260199112|ref|ZP_05766603.1| hypothetical protein MtubT4_02950 [Mycobacterium tuberculosis T46] gi|289441485|ref|ZP_06431229.1| conserved membrane protein [Mycobacterium tuberculosis T46] gi|289552367|ref|ZP_06441577.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605] gi|289568010|ref|ZP_06448237.1| conserved membrane protein [Mycobacterium tuberculosis T17] gi|289747883|ref|ZP_06507261.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289748589|ref|ZP_06507967.1| conserved membrane protein [Mycobacterium tuberculosis T92] gi|289756178|ref|ZP_06515556.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289760216|ref|ZP_06519594.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289764233|ref|ZP_06523611.1| conserved membrane protein [Mycobacterium tuberculosis GM 1503] gi|294992960|ref|ZP_06798651.1| hypothetical protein Mtub2_00255 [Mycobacterium tuberculosis 210] gi|297632590|ref|ZP_06950370.1| hypothetical protein MtubK4_00610 [Mycobacterium tuberculosis KZN 4207] gi|297729564|ref|ZP_06958682.1| hypothetical protein MtubKR_00635 [Mycobacterium tuberculosis KZN R506] gi|298527508|ref|ZP_07014917.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306774201|ref|ZP_07412538.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001] gi|306778946|ref|ZP_07417283.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002] gi|306805907|ref|ZP_07442575.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007] gi|306970303|ref|ZP_07482964.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009] gi|306974536|ref|ZP_07487197.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010] gi|307082244|ref|ZP_07491414.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011] gi|307082588|ref|ZP_07491701.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012] gi|313656891|ref|ZP_07813771.1| hypothetical protein MtubKV_00625 [Mycobacterium tuberculosis KZN V2475] gi|2909581|emb|CAA17310.1| POSSIBLE CONSERVED MEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv] gi|31616879|emb|CAD92981.1| POSSIBLE CONSERVED MEMBRANE PROTEIN [Mycobacterium bovis AF2122/97] gi|121491676|emb|CAL70134.1| Possible conserved membrane protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124603301|gb|EAY61576.1| hypothetical protein TBCG_00116 [Mycobacterium tuberculosis C] gi|134152082|gb|EBA44127.1| conserved membrane protein [Mycobacterium tuberculosis str. Haarlem] gi|148504032|gb|ABQ71841.1| putative conserved membrane protein [Mycobacterium tuberculosis H37Ra] gi|148719835|gb|ABR04460.1| conserved membrane protein [Mycobacterium tuberculosis F11] gi|224771615|dbj|BAH24421.1| hypothetical protein JTY_0120 [Mycobacterium bovis BCG str. Tokyo 172] gi|253318537|gb|ACT23140.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435] gi|289414404|gb|EFD11644.1| conserved membrane protein [Mycobacterium tuberculosis T46] gi|289436999|gb|EFD19492.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605] gi|289541763|gb|EFD45412.1| conserved membrane protein [Mycobacterium tuberculosis T17] gi|289688411|gb|EFD55899.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289689176|gb|EFD56605.1| conserved membrane protein [Mycobacterium tuberculosis T92] gi|289696765|gb|EFD64194.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289711739|gb|EFD75755.1| conserved membrane protein [Mycobacterium tuberculosis GM 1503] gi|289715780|gb|EFD79792.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|298497302|gb|EFI32596.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308217207|gb|EFO76606.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001] gi|308328067|gb|EFP16918.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002] gi|308347583|gb|EFP36434.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007] gi|308352208|gb|EFP41059.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009] gi|308356173|gb|EFP45024.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010] gi|308360113|gb|EFP48964.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011] gi|308367680|gb|EFP56531.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012] gi|323717255|gb|EGB26463.1| membrane protein [Mycobacterium tuberculosis CDC1551A] gi|326905875|gb|EGE52808.1| conserved membrane protein [Mycobacterium tuberculosis W-148] gi|328456823|gb|AEB02246.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207] Length = 251 Score = 39.4 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 18/73 (24%) Query: 176 LQVNLMRI---KKLLEQ--------------KMGLRYVLV-NIPAASLEAVENGKVGLRS 217 + N++R + + G + V +I A + NG+V Sbjct: 89 VASNVVRWVPHRYWPPHTRVSVGVQELTEGFETGDALIGVASISAHTFTVSRNGEVLRTM 148 Query: 218 TVIVGRVDRQTPI 230 +G+ R TPI Sbjct: 149 PASLGKPSRPTPI 161 >gi|306844341|ref|ZP_07476933.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella sp. BO1] gi|306275413|gb|EFM57154.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella sp. BO1] Length = 268 Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 7/73 (9%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVD-- 158 L G V+ L+ L + G ++ FD E +K FQ G+ D Sbjct: 195 LARGEQGQPVEALQSMLALYGY---EIAITGIFDEATEIVIKAFQRHFRPQNVDGVADVS 251 Query: 159 -SSTLEAMNVPVD 170 TL +N + Sbjct: 252 TIDTLYRLNFSLQ 264 >gi|296131570|ref|YP_003638817.1| carboxyl-terminal protease [Thermincola sp. JR] gi|296030148|gb|ADG80916.1| carboxyl-terminal protease [Thermincola potens JR] Length = 494 Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + LI+ G DA +A+K FQ GL P G++D T + +N Sbjct: 423 KILILLGY--NLDKPDTNLDAKTFAAIKKFQKDKGLYPYGVLDFITQQKLN 471 >gi|282892390|ref|ZP_06300740.1| hypothetical protein pah_c253o003 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497792|gb|EFB40153.1| hypothetical protein pah_c253o003 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 385 Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 78/231 (33%), Gaps = 28/231 (12%) Query: 8 NKILYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDI 67 N + + G+SLV A D I I +D +R+ + S Sbjct: 60 NDW-HLVHLGSRAAGGVSLVVVEATAVTRDGRITPFDMGIWSDDHIGPHSRLVEFVQSQG 118 Query: 68 PIISKETIAQTEKAIAFY-------QDILSRGGWPELPIRPLHLGNSSVSVQRLRERLII 120 + + + KA + GGW + P+ ++ + L Sbjct: 119 AVPAIQLAHAGRKASCDVPWRGGACLKTVQEGGWTTVAPSPIPFLDTDPRPEE----LNE 174 Query: 121 SGDLDPSKGLSVAFDAYVESAVKLFQ--MRHG------LDPSGMVDSSTLEAMNVPVDLR 172 G + K A +++ KL + HG L P + + T + ++ R Sbjct: 175 EGIYEMIKAFENACKRALKAGYKLIEIHSAHGYLLHQFLSP--ISNQRT-DQYGGSLENR 231 Query: 173 IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 +R L R++ ++ + + V I + VE G +S V+ G+ Sbjct: 232 MRLLLQVAERLRGIIPDDLP---LFVRISG--TDWVEGGWDIQQSVVLAGK 277 >gi|260769526|ref|ZP_05878459.1| VgrG protein [Vibrio furnissii CIP 102972] gi|260614864|gb|EEX40050.1| VgrG protein [Vibrio furnissii CIP 102972] Length = 1073 Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 13/74 (17%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH----------- 149 G+ V+ +++ LI G + G +F + E VK+FQ + Sbjct: 747 SYKTGSKGQEVELIQKALIKLGFDLGTYGADGSFGSTTERQVKMFQQSYTPSHSTHPDYK 806 Query: 150 -GLDPSGMVDSSTL 162 G G+V TL Sbjct: 807 VG-KADGIVGQGTL 819 >gi|308370318|ref|ZP_07421055.2| conserved membrane protein [Mycobacterium tuberculosis SUMu003] gi|308371591|ref|ZP_07425423.2| conserved membrane protein [Mycobacterium tuberculosis SUMu004] gi|308372809|ref|ZP_07429960.2| conserved membrane protein [Mycobacterium tuberculosis SUMu005] gi|308374629|ref|ZP_07436781.2| conserved membrane protein [Mycobacterium tuberculosis SUMu006] gi|308376311|ref|ZP_07438363.2| conserved membrane protein [Mycobacterium tuberculosis SUMu008] gi|308332440|gb|EFP21291.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003] gi|308336203|gb|EFP25054.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004] gi|308339806|gb|EFP28657.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005] gi|308341301|gb|EFP30152.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006] gi|308351526|gb|EFP40377.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008] Length = 254 Score = 39.4 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 18/73 (24%) Query: 176 LQVNLMRI---KKLLEQ--------------KMGLRYVLV-NIPAASLEAVENGKVGLRS 217 + N++R + + G + V +I A + NG+V Sbjct: 92 VASNVVRWVPHRYWPPHTRVSVGVQELTEGFETGDALIGVASISAHTFTVSRNGEVLRTM 151 Query: 218 TVIVGRVDRQTPI 230 +G+ R TPI Sbjct: 152 PASLGKPSRPTPI 164 >gi|261886092|ref|ZP_06010131.1| hypothetical protein CfetvA_14008 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 95 Score = 39.0 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 23/38 (60%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 +A V++A KL Q G+ P G++ TL A+N+ + + Sbjct: 21 NAGVKTAAKLAQKLAGVQPDGIIGIKTLSALNLGDEDK 58 >gi|13471560|ref|NP_103126.1| hypothetical protein mll1570 [Mesorhizobium loti MAFF303099] gi|14022302|dbj|BAB48912.1| mll1570 [Mesorhizobium loti MAFF303099] Length = 251 Score = 39.0 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 11/77 (14%) Query: 95 PELPIR---PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 P PIR L G V+ L+ L + G +S FD + V+ FQ RH Sbjct: 171 PAAPIRRGAALKAGERGADVEALQSMLALYGY---GVEISGIFDHQTQIVVEAFQ-RH-F 225 Query: 152 DP---SGMVDSSTLEAM 165 P G+ D ST+ + Sbjct: 226 RPRLIDGLADGSTMRTL 242 >gi|300856612|ref|YP_003781596.1| hypothetical protein CLJU_c34530 [Clostridium ljungdahlii DSM 13528] gi|300436727|gb|ADK16494.1| conserved protein [Clostridium ljungdahlii DSM 13528] Length = 220 Score = 39.0 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 6/74 (8%) Query: 84 FYQDILSRGGWPELP----IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVE 139 +Y I++ G P P +R L G V ++ RL +G S + + ++ Sbjct: 131 YYGMIVAVYGGPYGPFGKELRTLTPGVRGADVYEIQRRLKDAGYYCGS--MDGIYGESMK 188 Query: 140 SAVKLFQMRHGLDP 153 V F+ + L Sbjct: 189 KCVMKFRRDNKLPE 202 >gi|73950335|ref|XP_544383.2| PREDICTED: similar to matrix metalloproteinase 14 (membrane-inserted) [Canis familiaris] Length = 741 Score = 39.0 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 9/96 (9%) Query: 118 LIISGDLD-PSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L PS+ +S A + SA+ Q +G+ +G++D T M P D Sbjct: 120 LRLYGYLPQPSRHMSTMRSAQILASALAEMQRFYGIPVTGVLDEETKAWMKRPRCGVPDQ 179 Query: 172 RIRQLQVNLMRIKK---LLEQKMGLRYVLVNIPAAS 204 +++ NL R +K L +K ++ +I + Sbjct: 180 FGVRVKANLRRRRKRYALTGRKWNNHHLTFSIQNYT 215 >gi|306843211|ref|ZP_07475823.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella sp. BO2] gi|306286601|gb|EFM58176.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella sp. BO2] Length = 268 Score = 39.0 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 7/73 (9%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVD-- 158 L G V+ L+ L + G ++ FD E +K FQ G+ D Sbjct: 195 LARGEQGQPVEALQSMLALYGY---EIAITGIFDEATEIVIKAFQRHFRPQNVDGVADVS 251 Query: 159 -SSTLEAMNVPVD 170 TL +N + Sbjct: 252 TIDTLYRLNFSLQ 264 >gi|168178292|ref|ZP_02612956.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum NCTC 2916] gi|168184118|ref|ZP_02618782.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum Bf] gi|226948166|ref|YP_002803257.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A2 str. Kyoto] gi|237794190|ref|YP_002861742.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum Ba4 str. 657] gi|182670899|gb|EDT82873.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum NCTC 2916] gi|182672811|gb|EDT84772.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum Bf] gi|226841594|gb|ACO84260.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A2 str. Kyoto] gi|229261214|gb|ACQ52247.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum Ba4 str. 657] Length = 125 Score = 39.0 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 19/48 (39%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 +++N A +L N V V VG+ TP +I NP Sbjct: 17 RIVINTKAHTLTLFRNNNVYKTYKVAVGKPSTPTPKGTFKIINRAINP 64 >gi|308173260|ref|YP_003919965.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens DSM 7] gi|307606124|emb|CBI42495.1| bacteriophage PBSX N-acetylmuramoyl-L-alanine amidase [Bacillus amyloliquefaciens DSM 7] Length = 292 Score = 39.0 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 4/62 (6%) Query: 103 HLGNSSVSVQRLRERLIISGDLD----PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 S V +++ L + G+ + +AV FQ +GL G+ Sbjct: 222 EPYTSGEKVYQVQNALAALYFYPEKGAANNGIDGIYGPKTANAVARFQSVYGLPSDGIYG 281 Query: 159 SS 160 + Sbjct: 282 PA 283 >gi|291550549|emb|CBL26811.1| Uncharacterized protein conserved in bacteria [Ruminococcus torques L2-14] Length = 470 Score = 39.0 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD--RQTP 229 Q G Y V++ + V++G+V + + V+ G R TP Sbjct: 336 AQDWGSTYAEVDLTNQKMWYVKDGEVLMSADVVTGLPKGGRSTP 379 >gi|332257486|ref|XP_003277835.1| PREDICTED: LOW QUALITY PROTEIN: matrix metalloproteinase-21-like [Nomascus leucogenys] Length = 532 Score = 39.0 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 25/117 (21%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL 102 + + ++ D P+ + IA A Q LSR GW + Sbjct: 15 WLAAPWPTQPESLFHSRDRSDLEPSPLRQAKPIADLHAA----QRFLSRYGWSGVRA--- 67 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 G + A + AV+ FQ + L SG +D+ Sbjct: 68 -----------------AWGPSPEGPPETPK-GAALAEAVRRFQRANALPASGELDA 106 >gi|313836530|gb|EFS74244.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL037PA2] gi|314928984|gb|EFS92815.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL044PA1] gi|314971123|gb|EFT15221.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL037PA3] gi|328906571|gb|EGG26346.1| lipoprotein A-like protein [Propionibacterium sp. P08] Length = 361 Score = 39.0 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + + ++ L P+K + + + +AVK+FQ + L +G+ D+ T Sbjct: 142 GDHNARSKVVQRDLSTLNYF-PAKWVGLPYGPATTNAVKVFQRANALKQTGVTDAVTQSL 200 Query: 165 MNVPVDLRIRQLQVNLM 181 + RQ + Sbjct: 201 L-KSKANYQRQRAASAE 216 >gi|224122140|ref|XP_002318762.1| predicted protein [Populus trichocarpa] gi|222859435|gb|EEE96982.1| predicted protein [Populus trichocarpa] Length = 341 Score = 39.0 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPS-KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 H G + +L+ G + S + FD +ESA++ +Q L+ +G +D T Sbjct: 53 HAGEKYDGLAKLKSYFQYFGYIPNSLSNFTDDFDDSLESALRTYQQNFNLNITGQLDDQT 112 Query: 162 LEAMNVP 168 + + P Sbjct: 113 VNHIVRP 119 >gi|161619391|ref|YP_001593278.1| protein ampD [Brucella canis ATCC 23365] gi|161336202|gb|ABX62507.1| Protein ampD [Brucella canis ATCC 23365] Length = 268 Score = 39.0 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 7/73 (9%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVD-- 158 L G V+ L+ L + G ++ FD E +K FQ G+ D Sbjct: 195 LARGEQGQPVEALQSMLALYGY---EIAITGIFDEATEIVIKAFQRHFRPQNVDGVADVS 251 Query: 159 -SSTLEAMNVPVD 170 TL +N + Sbjct: 252 TIDTLYRLNFSLQ 264 >gi|17986848|ref|NP_539482.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella melitensis bv. 1 str. 16M] gi|23502315|ref|NP_698442.1| N-acetylmuramoyl-L-alanine amidase [Brucella suis 1330] gi|62290337|ref|YP_222130.1| N-acetylmuramoyl-L-alanine amidase [Brucella abortus bv. 1 str. 9-941] gi|82700260|ref|YP_414834.1| peptidoglycan binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|148559422|ref|YP_001259335.1| N-acetylmuramoyl-L-alanine amidase [Brucella ovis ATCC 25840] gi|163843698|ref|YP_001628102.1| protein ampD [Brucella suis ATCC 23445] gi|189024568|ref|YP_001935336.1| peptidoglycan binding domain 1 [Brucella abortus S19] gi|225852925|ref|YP_002733158.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis ATCC 23457] gi|237815842|ref|ZP_04594839.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella abortus str. 2308 A] gi|254689636|ref|ZP_05152890.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 6 str. 870] gi|254694126|ref|ZP_05155954.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 3 str. Tulya] gi|254697778|ref|ZP_05159606.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 2 str. 86/8/59] gi|254702163|ref|ZP_05163991.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 5 str. 513] gi|254704700|ref|ZP_05166528.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 3 str. 686] gi|254708114|ref|ZP_05169942.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis M163/99/10] gi|254710483|ref|ZP_05172294.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis B2/94] gi|254714476|ref|ZP_05176287.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti M644/93/1] gi|254717374|ref|ZP_05179185.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti M13/05/1] gi|254719473|ref|ZP_05181284.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella sp. 83/13] gi|254730667|ref|ZP_05189245.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 4 str. 292] gi|256031977|ref|ZP_05445591.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis M292/94/1] gi|256045072|ref|ZP_05447973.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis bv. 1 str. Rev.1] gi|256061499|ref|ZP_05451643.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella neotomae 5K33] gi|256114001|ref|ZP_05454778.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis bv. 3 str. Ether] gi|256257886|ref|ZP_05463422.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 9 str. C68] gi|256263595|ref|ZP_05466127.1| N-acetylmuramoyl-L-alanine amidase [Brucella melitensis bv. 2 str. 63/9] gi|256369860|ref|YP_003107371.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Brucella microti CCM 4915] gi|260546877|ref|ZP_05822616.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus NCTC 8038] gi|260565329|ref|ZP_05835813.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis bv. 1 str. 16M] gi|260566052|ref|ZP_05836522.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 4 str. 40] gi|260755165|ref|ZP_05867513.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 6 str. 870] gi|260758384|ref|ZP_05870732.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 4 str. 292] gi|260762210|ref|ZP_05874553.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 2 str. 86/8/59] gi|260884179|ref|ZP_05895793.1| N-acetylmuramoyl-L-alanine amidase [Brucella abortus bv. 9 str. C68] gi|261214427|ref|ZP_05928708.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 3 str. Tulya] gi|261219206|ref|ZP_05933487.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti M13/05/1] gi|261315618|ref|ZP_05954815.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis M163/99/10] gi|261318055|ref|ZP_05957252.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis B2/94] gi|261322267|ref|ZP_05961464.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti M644/93/1] gi|261325507|ref|ZP_05964704.1| N-acetylmuramoyl-L-alanine amidase [Brucella neotomae 5K33] gi|261752734|ref|ZP_05996443.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 5 str. 513] gi|261755394|ref|ZP_05999103.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 3 str. 686] gi|265984481|ref|ZP_06097216.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella sp. 83/13] gi|265989088|ref|ZP_06101645.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis M292/94/1] gi|265991501|ref|ZP_06104058.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis bv. 1 str. Rev.1] gi|265995339|ref|ZP_06107896.1| N-acetylmuramoyl-L-alanine amidase [Brucella melitensis bv. 3 str. Ether] gi|294852769|ref|ZP_06793442.1| N-acetylmuramoyl-L-alanine amidase [Brucella sp. NVSL 07-0026] gi|297248723|ref|ZP_06932441.1| N-acetylmuramoyl-L-alanine amidase [Brucella abortus bv. 5 str. B3196] gi|306839252|ref|ZP_07472069.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella sp. NF 2653] gi|17982484|gb|AAL51746.1| anhydro-n-acetylmuramyl-tripeptide amidase [Brucella melitensis bv. 1 str. 16M] gi|23348293|gb|AAN30357.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Brucella suis 1330] gi|62196469|gb|AAX74769.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Brucella abortus bv. 1 str. 9-941] gi|82616361|emb|CAJ11418.1| Putative peptidoglycan binding domain 1:N-acetylmuramoyl-L-alanine amidase, family 2 [Brucella melitensis biovar Abortus 2308] gi|148370679|gb|ABQ60658.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Brucella ovis ATCC 25840] gi|163674421|gb|ABY38532.1| Protein ampD [Brucella suis ATCC 23445] gi|189020140|gb|ACD72862.1| Putative peptidoglycan binding domain 1 [Brucella abortus S19] gi|225641290|gb|ACO01204.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis ATCC 23457] gi|237789140|gb|EEP63351.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella abortus str. 2308 A] gi|256000023|gb|ACU48422.1| N-acetylmuramoyl-L-alanine amidase, family 2 [Brucella microti CCM 4915] gi|260095927|gb|EEW79804.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus NCTC 8038] gi|260151397|gb|EEW86491.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis bv. 1 str. 16M] gi|260155570|gb|EEW90650.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 4 str. 40] gi|260668702|gb|EEX55642.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 4 str. 292] gi|260672642|gb|EEX59463.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 2 str. 86/8/59] gi|260675273|gb|EEX62094.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 6 str. 870] gi|260873707|gb|EEX80776.1| N-acetylmuramoyl-L-alanine amidase [Brucella abortus bv. 9 str. C68] gi|260916034|gb|EEX82895.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella abortus bv. 3 str. Tulya] gi|260924295|gb|EEX90863.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti M13/05/1] gi|261294957|gb|EEX98453.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella ceti M644/93/1] gi|261297278|gb|EEY00775.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis B2/94] gi|261301487|gb|EEY04984.1| N-acetylmuramoyl-L-alanine amidase [Brucella neotomae 5K33] gi|261304644|gb|EEY08141.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis M163/99/10] gi|261742487|gb|EEY30413.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 5 str. 513] gi|261745147|gb|EEY33073.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella suis bv. 3 str. 686] gi|262766452|gb|EEZ12241.1| N-acetylmuramoyl-L-alanine amidase [Brucella melitensis bv. 3 str. Ether] gi|263002285|gb|EEZ14860.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis bv. 1 str. Rev.1] gi|263093644|gb|EEZ17649.1| N-acetylmuramoyl-L-alanine amidase [Brucella melitensis bv. 2 str. 63/9] gi|264661285|gb|EEZ31546.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella pinnipedialis M292/94/1] gi|264663073|gb|EEZ33334.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella sp. 83/13] gi|294821358|gb|EFG38357.1| N-acetylmuramoyl-L-alanine amidase [Brucella sp. NVSL 07-0026] gi|297175892|gb|EFH35239.1| N-acetylmuramoyl-L-alanine amidase [Brucella abortus bv. 5 str. B3196] gi|306405799|gb|EFM62061.1| anhydro-N-acetylmuramyl-tripeptide amidase [Brucella sp. NF 2653] gi|326409467|gb|ADZ66532.1| Putative peptidoglycan binding domain 1 [Brucella melitensis M28] gi|326539174|gb|ADZ87389.1| N-acetylmuramoyl-L-alanine amidase family 2 [Brucella melitensis M5-90] Length = 268 Score = 39.0 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 7/73 (9%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVD-- 158 L G V+ L+ L + G ++ FD E +K FQ G+ D Sbjct: 195 LARGEQGQPVEALQSMLALYGY---EIAITGIFDEATEIVIKAFQRHFRPQNVDGVADVS 251 Query: 159 -SSTLEAMNVPVD 170 TL +N + Sbjct: 252 TIDTLYRLNFSLQ 264 >gi|300814270|ref|ZP_07094542.1| ErfK/YbiS/YcfS/YnhG [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511537|gb|EFK38765.1| ErfK/YbiS/YcfS/YnhG [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 458 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 12/80 (15%) Query: 162 LEAMNVPVDLRI----RQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 ++A+N D + R + VN + + +G Y+ V++ + ++GK+ L + Sbjct: 300 IKALNERKDKELTPVYRTVAVN----RAV--NDLGNSYIEVDLARQNAWLYKDGKLILET 353 Query: 218 TVIVGRV--DRQTPILHSRI 235 ++ G + TP +I Sbjct: 354 KIVTGNPGENNATPTGTHKI 373 >gi|197117605|ref|YP_002138032.1| peptidoglycan-binding ATPase [Geobacter bemidjiensis Bem] gi|197086965|gb|ACH38236.1| peptidoglycan-binding ATPase, putative [Geobacter bemidjiensis Bem] Length = 536 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + V+ L+ L G D + ++ ++AV FQ R L G + TL + Sbjct: 457 EKAAGVKLLQGLLKQVGCYDGAVNGELS--DKTQAAVAEFQRREQLTADGKLGGQTLMML 514 >gi|73808271|ref|NP_001027449.1| putative MMP28 gene product isoform 3 precursor [Homo sapiens] gi|332847988|ref|XP_003315565.1| PREDICTED: matrix metalloproteinase-28-like [Pan troglodytes] gi|15079976|gb|AAH11774.1| Matrix metallopeptidase 28 [Homo sapiens] Length = 130 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 16/82 (19%) Query: 94 WPELPIRPLHLGNSSVSVQRLRER----LIISGDLD---PSKGLSVAFDAYVESAVKLFQ 146 W L +P G Q LR+ L G L+ P S F A++ FQ Sbjct: 17 WGHLDAQPAERGG-----QELRKEAEAFLEKYGYLNEQVPKAPTSTRF----SDAIRAFQ 67 Query: 147 MRHGLDPSGMVDSSTLEAMNVP 168 L SG++D +TL M P Sbjct: 68 WVSQLPVSGVLDRATLRQMTRP 89 >gi|75908094|ref|YP_322390.1| peptidoglycan binding domain-containing protein [Anabaena variabilis ATCC 29413] gi|75701819|gb|ABA21495.1| Peptidoglycan-binding domain 1 [Anabaena variabilis ATCC 29413] Length = 261 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 14/146 (9%) Query: 35 VLDEIINESYHSIVNDRFDNFLARVDMGID-SDIPIISKETIAQTEKAIAFYQDILSRGG 93 + + + F L + + ++ P+ T A+T+KAI+ +Q G Sbjct: 24 ISNTTFAARQRNYTPQEFRTVLRGLGYNVKVTNTPL----TDAETKKAISEFQK-----G 74 Query: 94 WPELP----IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 + P P ++ VQ L+ L +P + E+A+K FQ +H Sbjct: 75 YKLTPVDGIAGPKTQDFAANIVQILQANLNAVLKTNPPLPRDQFYGPKTEAAIKEFQTKH 134 Query: 150 GLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L+ +G+ + + + ++ I Q Sbjct: 135 KLEATGIANLALRQKLDEEAKKVISQ 160 >gi|281417038|ref|ZP_06248058.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum JW20] gi|281408440|gb|EFB38698.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium thermocellum JW20] Length = 230 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 2/63 (3%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 P + L G+ V ++++ L G S F ++ +V FQ + + +G V Sbjct: 148 PFKELKSGDVGSDVLKVQKALKKLGYFH--DWPSGKFQDNLKKSVIKFQKNNKIKVTGTV 205 Query: 158 DSS 160 + S Sbjct: 206 NKS 208 >gi|253580585|ref|ZP_04857849.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847956|gb|EES75922.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 301 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 22/48 (45%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L++ G + F + + +AVK FQ GL SG D +T + Sbjct: 252 LLLHGYNPNGVEIPGIFGSGLLTAVKTFQKAQGLTVSGTCDRNTFLKL 299 >gi|125974431|ref|YP_001038341.1| carboxyl-terminal protease [Clostridium thermocellum ATCC 27405] gi|256005216|ref|ZP_05430184.1| carboxyl-terminal protease [Clostridium thermocellum DSM 2360] gi|281418956|ref|ZP_06249974.1| carboxyl-terminal protease [Clostridium thermocellum JW20] gi|125714656|gb|ABN53148.1| carboxyl-terminal protease [Clostridium thermocellum ATCC 27405] gi|255990870|gb|EEU00984.1| carboxyl-terminal protease [Clostridium thermocellum DSM 2360] gi|281407413|gb|EFB37673.1| carboxyl-terminal protease [Clostridium thermocellum JW20] gi|316941567|gb|ADU75601.1| carboxyl-terminal protease [Clostridium thermocellum DSM 1313] Length = 505 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%) Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 + L G D AV FQ GL G++D +T +A+N Sbjct: 432 KILSALGY--DVDTPDNLMDEKTVKAVAEFQRDCGLYSYGVLDFATQQALN 480 >gi|222147474|ref|YP_002548431.1| hypothetical protein Avi_0601 [Agrobacterium vitis S4] gi|221734464|gb|ACM35427.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 1275 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 19/114 (16%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPI---------------RPLHLGNSS--VSV 111 +E +A++ + A + S W +P+ + L G+ +V Sbjct: 1159 AAKQEEVARSMQPAALARAKASVQQWQTMPMNADANTVNLPDEWVGKSLKTGSVDMEKAV 1218 Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + ++ L +G + A +A+K FQ G +PSG V + ++A+ Sbjct: 1219 RNIQAILNKNGF--NAGEPDGKLGARTVAAIKAFQTSVGQEPSGKVSNELVKAL 1270 >gi|218462264|ref|ZP_03502355.1| Peptidoglycan-binding domain 1 protein [Rhizobium etli Kim 5] Length = 244 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L +RL + G + + A+K FQ L +G D +T+EA+ Sbjct: 8 LIQRLRLHGAY--AGVVDDVHGRATIEALKRFQHAEALPETGQADETTIEAL 57 >gi|328871644|gb|EGG20014.1| hypothetical protein DFA_07130 [Dictyostelium fasciculatum] Length = 434 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Query: 101 PLHLGNSSV----SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L G S ++ L L+ G ++ + + + E A+K FQ+ +G +G+ Sbjct: 349 SLKEGVKSSSPPEAISVLNYSLLFIGYMEDTLSKE-MYTSNTEFAIKKFQLDNGFPETGI 407 Query: 157 VDSSTLEAM 165 D T++++ Sbjct: 408 ADFPTMKSI 416 >gi|29830746|ref|NP_825380.1| peptidoglycan-binding protein [Streptomyces avermitilis MA-4680] gi|29607859|dbj|BAC71915.1| putative peptidoglycan-binding protein, secreted [Streptomyces avermitilis MA-4680] Length = 134 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L LGN V L+ L + F A+K Q + G G+ +T Sbjct: 58 LALGNRGDGVLALQRTLRRC--YGSTIVADGIFGPSTRDALKYAQHQAGTQDDGVYGPNT 115 Query: 162 LEAM 165 A+ Sbjct: 116 RRAI 119 >gi|209965073|ref|YP_002297988.1| localization factor PodJL [Rhodospirillum centenum SW] gi|209958539|gb|ACI99175.1| localization factor PodJL [Rhodospirillum centenum SW] Length = 335 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++Q ++ L G DA +AVK +Q GL +G +D +T++ + Sbjct: 65 GATIQWAQQILDEKGFYQGRAHG--RLDAATTAAVKAYQKSVGLKVTGTLDKATVDRL 120 >gi|126732715|ref|ZP_01748511.1| peptidoglycan binding domain protein [Sagittula stellata E-37] gi|126706845|gb|EBA05915.1| peptidoglycan binding domain protein [Sagittula stellata E-37] Length = 466 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 7/75 (9%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 +G WP RPL +S + L+ RL +G +KG+ A++ +Q R G Sbjct: 398 QGSWPR-DNRPL----TSSERKELQTRLTQAGY--DTKGVDGRIGPMTLQAIRGYQRRAG 450 Query: 151 LDPSGMVDSSTLEAM 165 L P G L+ + Sbjct: 451 LVPDGYASMELLKKL 465 >gi|326508750|dbj|BAJ95897.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326534042|dbj|BAJ89371.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 382 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L +G+ V+ ++E L G + +F E AVK +Q G G++ Sbjct: 183 RALRVGSEGEEVRAMQEALEKLGFYSGEEDTEFSSFSTGTERAVKTWQASIGTTEDGLMT 242 Query: 159 SSTLEAM 165 S LE + Sbjct: 243 SELLEML 249 >gi|326503598|dbj|BAJ86305.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 382 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLS-VAFDAYVESAVKLFQMRHGLDPSGMVD 158 R L +G+ V+ ++E L G + +F E AVK +Q G G++ Sbjct: 183 RALRVGSEGEEVRAMQEALEKLGFYSGEEDTEFSSFSTGTERAVKTWQASIGTTEDGLMT 242 Query: 159 SSTLEAM 165 S LE + Sbjct: 243 SELLEML 249 >gi|288962623|ref|YP_003452917.1| plasma membrane H+-transporting two-sector ATPase [Azospirillum sp. B510] gi|288914889|dbj|BAI76373.1| plasma membrane H+-transporting two-sector ATPase [Azospirillum sp. B510] Length = 1139 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 19/40 (47%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 + AV+ FQ GL P+G +D+ TL + + Q Sbjct: 83 ERTQRAVRAFQRGQGLTPTGTLDAETLRRLGIGDSAPASQ 122 >gi|170742496|ref|YP_001771151.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylobacterium sp. 4-46] gi|168196770|gb|ACA18717.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylobacterium sp. 4-46] Length = 249 Score = 39.0 bits (90), Expect = 1.4, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 19/123 (15%) Query: 59 VDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGW------------PELPIRPLH--- 103 + I + PI + + ++ A A QD W P +PIR Sbjct: 121 LSRDILARWPIRADRVLGHSDVAPARKQDPGETFPWARLHREGIGHFVPPVPIRDGRFFA 180 Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDSSTL 162 G++ ++ L+ + G + ++ FD+ + + V+ FQ + G+ DSST+ Sbjct: 181 EGDAGQPIEALQAMFALYGY---DQPVTGRFDSGMRAVVEAFQRHFRPERVDGVADSSTI 237 Query: 163 EAM 165 + Sbjct: 238 TTL 240 >gi|269955655|ref|YP_003325444.1| peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] gi|269304336|gb|ACZ29886.1| Peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] Length = 360 Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R L G V+++++ L +G L + F +AV+ +Q G+ G+V Sbjct: 121 RDLGAGTVGEDVRQIQQLLHDTGFLVAEP--TGRFGPATTAAVRAWQRSLGVTVDGVV 176 >gi|146329733|ref|YP_001209644.1| hypothetical protein DNO_0739 [Dichelobacter nodosus VCS1703A] gi|146233203|gb|ABQ14181.1| conserved hypothetical membrane protein [Dichelobacter nodosus VCS1703A] Length = 275 Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 9/78 (11%) Query: 124 LDPSKGLSVAFDAYVESAVKL----FQMRHGLDPSGMVDSSTLEAM-NVPVDLRIRQL-- 176 L P+ D V S V+ Q G+ G++ + TL+A+ PV+ I L Sbjct: 77 LLPAGVDYALLDFAVHSGVRRAAKTIQKIAGVPTDGIIGAQTLKALKQQPVEPLIEALCM 136 Query: 177 --QVNLMRIKKLLEQKMG 192 L R+K K G Sbjct: 137 ERMAFLKRLKNWHAFKRG 154 >gi|307293274|ref|ZP_07573120.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobium chlorophenolicum L-1] gi|306881340|gb|EFN12556.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingobium chlorophenolicum L-1] Length = 362 Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 8/59 (13%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 PG + I+ + Y +H TPEP + R E+ GC+R+ N L + Sbjct: 299 KPGPNGPVGVVWIDLSKPH--YGIHGTPEP---QTIGRAESHGCIRLTNWDAARLAQMV 352 >gi|126323935|ref|XP_001378518.1| PREDICTED: similar to membrane-type-4 matrix metalloproteinase [Monodelphis domestica] Length = 589 Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P ++ + A+ Q GL+ +G++D +TL+ M P Sbjct: 43 LSRFGYLPPPDPVTGQLQTQEELAKAIAAMQRFGGLEATGVLDEATLQLMKTP 95 >gi|119390203|pdb|2IKB|A Chain A, Crystal Structure Of A Protein Of Unknown Function Nmb1012 From Neisseria Meningitidis gi|119390204|pdb|2IKB|B Chain B, Crystal Structure Of A Protein Of Unknown Function Nmb1012 From Neisseria Meningitidis gi|119390205|pdb|2IKB|C Chain C, Crystal Structure Of A Protein Of Unknown Function Nmb1012 From Neisseria Meningitidis gi|119390206|pdb|2IKB|D Chain D, Crystal Structure Of A Protein Of Unknown Function Nmb1012 From Neisseria Meningitidis Length = 167 Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 123 DLDPSKGLSVAFDAYVE----SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 D P FDA V +A + Q G+ G++ + +L+A+N + + L+ Sbjct: 71 DQXPEAVAFQFFDACVNHGYGNAARXLQRAAGVPDDGVIGAVSLKAINSLPENDL-LLRF 129 Query: 179 NLMRI 183 N R+ Sbjct: 130 NAERL 134 >gi|148556704|ref|YP_001264286.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingomonas wittichii RW1] gi|148501894|gb|ABQ70148.1| ErfK/YbiS/YcfS/YnhG family protein [Sphingomonas wittichii RW1] Length = 328 Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 8/64 (12%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLL 357 PG + I+ ++ Y +H TP P + R E+ GC+R+ N L + + Sbjct: 265 PPGPNGPVGVVWIDLDKQH--YGIHGTPNP---EKIGRTESHGCIRLTNWDAARLAMMVK 319 Query: 358 KDTP 361 TP Sbjct: 320 PGTP 323 >gi|292493016|ref|YP_003528455.1| hypothetical protein Nhal_3011 [Nitrosococcus halophilus Nc4] gi|291581611|gb|ADE16068.1| protein of unknown function DUF323 [Nitrosococcus halophilus Nc4] Length = 799 Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 13/81 (16%) Query: 95 PELPIRPLHLG----------NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 P++P +P ++S VQ R L I G +G+ F E A++ Sbjct: 418 PKVPSKPELPSPQKVEAEFDLSTSQRVQVQRA-LDILG--HDPQGVDGIFGPKTEDAIRS 474 Query: 145 FQMRHGLDPSGMVDSSTLEAM 165 +Q GL+P+G + +T E + Sbjct: 475 WQRAEGLEPTGDLTQATYEQL 495 >gi|119390280|pdb|2IS5|A Chain A, Crystal Structure Of 3 Residues Truncated Version Of Protein Nmb1012 From Neisseria Meningitides gi|119390281|pdb|2IS5|B Chain B, Crystal Structure Of 3 Residues Truncated Version Of Protein Nmb1012 From Neisseria Meningitides gi|119390282|pdb|2IS5|C Chain C, Crystal Structure Of 3 Residues Truncated Version Of Protein Nmb1012 From Neisseria Meningitides gi|119390283|pdb|2IS5|D Chain D, Crystal Structure Of 3 Residues Truncated Version Of Protein Nmb1012 From Neisseria Meningitides Length = 166 Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 123 DLDPSKGLSVAFDAYVE----SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 D P FDA V +A + Q G+ G++ + +L+A+N + + L+ Sbjct: 72 DQXPEAVAFQFFDACVNHGYGNAARXLQRAAGVPDDGVIGAVSLKAINSLPENDL-LLRF 130 Query: 179 NLMRI 183 N R+ Sbjct: 131 NAERL 135 >gi|304320863|ref|YP_003854506.1| hypothetical protein PB2503_06492 [Parvularcula bermudensis HTCC2503] gi|303299765|gb|ADM09364.1| hypothetical protein PB2503_06492 [Parvularcula bermudensis HTCC2503] Length = 403 Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 8/93 (8%) Query: 75 IAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAF 134 I AIA + WP R L L Q L+ER DP + Sbjct: 318 IGLLSDAIAG-RQSALSTQWPR-DDRSLSLTERKSLQQTLKER-----GYDPGPVDGII- 369 Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 A ++A++ +Q GL G + TL +++ Sbjct: 370 GAGTKAALRAWQRDQGLPADGYASARTLSVLSM 402 >gi|312084157|ref|XP_003144160.1| hypothetical protein LOAG_08582 [Loa loa] gi|307760677|gb|EFO19911.1| hypothetical protein LOAG_08582 [Loa loa] Length = 266 Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 8/58 (13%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAF----DAYVESAVKLF--QMRHGLDPSG 155 G+S S+ R+ D S+ ++ + D V A K F Q HG++ G Sbjct: 191 PGDSLSSIPTTRK--FFWTDESSSQRVTATYMDFQDDAVVEARKHFGCQNLHGIEADG 246 >gi|316931482|ref|YP_004106464.1| peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris DX-1] gi|315599196|gb|ADU41731.1| Peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris DX-1] Length = 446 Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 Q ++ L +GD + V+ + +A+K FQ G P+G+++ + Sbjct: 52 QAIQSDLAWTGDYNGLINGEVS--DRMIAAIKQFQTNQGHKPTGVLNPQERGQL 103 >gi|192288521|ref|YP_001989126.1| peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris TIE-1] gi|192282270|gb|ACE98650.1| Peptidoglycan-binding domain 1 protein [Rhodopseudomonas palustris TIE-1] Length = 448 Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 Q ++ L +GD + V+ + +A+K FQ G P+G+++ + Sbjct: 53 QAIQSDLAWTGDYNGLINGEVS--DRMIAAIKQFQTNQGHKPTGVLNPQERGQL 104 >gi|149186655|ref|ZP_01864966.1| hypothetical protein ED21_29191 [Erythrobacter sp. SD-21] gi|148829563|gb|EDL48003.1| hypothetical protein ED21_29191 [Erythrobacter sp. SD-21] Length = 406 Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 57/177 (32%), Gaps = 44/177 (24%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIP 247 + + ++V+ +L A ++ K+ TV G + PI I I NP + Sbjct: 266 SDQPQVDRIVVSKSEDTLRAYQDDKLVALFTVSSGSSEFPLPIGEWDILGIAQNPPF--- 322 Query: 248 RSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINA 307 D + + + + + PG Sbjct: 323 ------DYDPRVLEGDDDAEGESYTL---------------------------PPGPNGP 349 Query: 308 MASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLLKDTP 361 + I+ + Y +H TPEP + R ++ GCVR+ N L + + T Sbjct: 350 VGVVWIDLSKEH--YGIHGTPEP---QTIGRAQSHGCVRLTNWDAARLARMVSQSTQ 401 >gi|284045118|ref|YP_003395458.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] gi|283949339|gb|ADB52083.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] Length = 345 Score = 39.0 bits (90), Expect = 1.5, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 10/106 (9%) Query: 153 PSGM------VDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY---VLVNIPAA 203 G+ + A+ D R +++ ++R K Q + +Y + V+ A Sbjct: 168 QDGVDVDSRRLRRGVARALRRTDDARTVKVRAAVVRPKVTTAQ-LAKQYPVVITVDRAAF 226 Query: 204 SLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 L +N ++ TV +G++ TP I +P W +P S Sbjct: 227 RLSLWKNLRLAKSYTVAIGQIGLDTPAGLYEIQNKAVDPVWSVPNS 272 >gi|320354604|ref|YP_004195943.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] gi|320123106|gb|ADW18652.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM 2032] Length = 1626 Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 64/183 (34%), Gaps = 39/183 (21%) Query: 20 LPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTE 79 LP G SL + A+ +E +S + +ND PI + Sbjct: 1348 LPGGRSLPILAMTANAFNEDREQSLRAGMNDHIAK-------------PIELAKLHELLI 1394 Query: 80 KAIAFYQDI-LSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSV-AFDAY 137 K + QD+ + GG P PL G++ + L RL L+ + GL + DA Sbjct: 1395 KWLPPRQDLPAAAGGDP-----PLLPGDARLRQTDLLARLQAVDGLEATAGLKLLRGDAS 1449 Query: 138 V-ESAVKLFQMRHGLDPSGM----------VD--SSTLEAMNVPV----DLRIRQLQVNL 180 ++ F +HG G+ T A+ RI QL +L Sbjct: 1450 RYVQVLRQFVDQHG--QDGIELARQAKSGAFGAIRQTAHALKGAAGTLGARRIEQLAADL 1507 Query: 181 MRI 183 R+ Sbjct: 1508 ERL 1510 >gi|239926862|ref|ZP_04683815.1| secreted peptidase [Streptomyces ghanaensis ATCC 14672] gi|291435207|ref|ZP_06574597.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291338102|gb|EFE65058.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 217 Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 4/64 (6%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH---GLDPSGMVDSST 161 G +Q ++ LI G + G + + +AV FQ + G G+ T Sbjct: 13 GGKDSCIQTFQKALIAKGH-KIADGATGYYGDQTRAAVAAFQRKQGWTGPAADGLPGPQT 71 Query: 162 LEAM 165 + Sbjct: 72 FAKL 75 >gi|315637269|ref|ZP_07892488.1| conserved hypothetical protein [Arcobacter butzleri JV22] gi|315478433|gb|EFU69147.1| conserved hypothetical protein [Arcobacter butzleri JV22] Length = 196 Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 16/26 (61%) Query: 141 AVKLFQMRHGLDPSGMVDSSTLEAMN 166 A+K Q G+ G++ + TL+A+N Sbjct: 117 AIKEAQKLIGVAADGIIGTQTLKALN 142 >gi|47220689|emb|CAG11758.1| unnamed protein product [Tetraodon nigroviridis] Length = 439 Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 118 LIISGDL-DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 LI G L D + + V A+++FQ + L P+G D +T++ M P Sbjct: 6 LIKYGYLKDAADQEDPQYLEEVIEALRVFQKANDLLPTGEPDEATIQVMRQP 57 >gi|291545277|emb|CBL18386.1| Putative peptidoglycan-binding domain-containing protein [Ruminococcus sp. 18P13] Length = 165 Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%) Query: 102 LHLGNSSVSVQRLRERLIISG---DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 L G+S V ++ L G D ++ +F+A +A++ Q L +G VD Sbjct: 93 LREGDSGTLVYIVQAMLNDIGSRYDNLAPVAINGSFNAATTNAIRGVQQAADLPQTGAVD 152 Query: 159 SSTLEAMNVPVD 170 T M V Sbjct: 153 RDTWNWMVTAVQ 164 Score = 36.7 bits (84), Expect = 7.9, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 20/40 (50%) Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 P+ + SAV+ FQ + L +G V+ +T +A+ Sbjct: 30 PTVTPDGIYGPRTVSAVQAFQKIYNLPATGEVNRATWDAI 69 >gi|281346053|gb|EFB21637.1| hypothetical protein PANDA_004527 [Ailuropoda melanoleuca] Length = 564 Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L PS + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 4 LKSYGYLLPSDSRAPALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 56 >gi|320529545|ref|ZP_08030629.1| 3D domain protein [Selenomonas artemidis F0399] gi|320138166|gb|EFW30064.1| 3D domain protein [Selenomonas artemidis F0399] Length = 234 Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 8/124 (6%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G +VQ ++E LI +G L+ VA A +A++ Q H L G+ +T Sbjct: 56 KEGMRGGAVQHVQELLIKAGYLEEGGADGVA-GAKTRAAIERCQTDHMLVVDGICGEATY 114 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 ++ V L + R +++ + R + V+ A S NG S +G Sbjct: 115 LVLSGGVPYDPVALGIRDERSEQV--SRGSGRSLFVSATAYSAHDPGNG-----SRTAMG 167 Query: 223 RVDR 226 R Sbjct: 168 TPVR 171 >gi|313896950|ref|ZP_07830497.1| 3D domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312974397|gb|EFR39865.1| 3D domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 234 Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 8/124 (6%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G +VQ ++E LI +G L+ VA A +A++ Q H L G+ +T Sbjct: 56 KEGMRGGAVQHVQELLIKAGYLEEGGADGVA-GAKTRAAIERCQTDHMLVVDGICGEATY 114 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 ++ V L + R +++ + R + V+ A S NG S +G Sbjct: 115 LVLSGGVPYDPVALGIRDERSEQV--SRGSGRSLFVSATAYSAHDPGNG-----SRTAMG 167 Query: 223 RVDR 226 R Sbjct: 168 TPVR 171 >gi|311257207|ref|XP_003127010.1| PREDICTED: matrix metalloproteinase-15-like [Sus scrofa] Length = 656 Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 9/96 (9%) Query: 118 LIISGDLD-PSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L PS+ +S A + SA+ Q +G+ +G++D T M P D Sbjct: 38 LRLYGYLPQPSRHMSTMRSAQILASALAEMQRFYGIPVTGVLDEETKAWMKRPRCGVPDQ 97 Query: 172 RIRQLQVNLMRIKK---LLEQKMGLRYVLVNIPAAS 204 +++ NL R +K L +K ++ +I + Sbjct: 98 FGVRVKANLRRRRKRYALTGRKWNNHHLTFSIQNYT 133 >gi|156717858|ref|NP_001096469.1| matrix metallopeptidase 17 (membrane-inserted) [Xenopus (Silurana) tropicalis] gi|134024244|gb|AAI36207.1| LOC100125088 protein [Xenopus (Silurana) tropicalis] Length = 588 Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P ++ + A+K Q GL +G++D TLE M P Sbjct: 45 LTKFGYLPPPDPVTGQLQTQEELSKAIKAMQEFGGLKATGILDEPTLELMKTP 97 >gi|126668023|ref|ZP_01738987.1| putative transglycosylase protein [Marinobacter sp. ELB17] gi|126627533|gb|EAZ98166.1| putative transglycosylase protein [Marinobacter sp. ELB17] Length = 480 Score = 39.0 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++ L+ +L I G + + SA+K Q HGL +G + TL ++ P Sbjct: 340 AELKALQRQLAIYGYKPGT--IDGIMGQNTRSAIKRLQREHGLPETGWLSRETLLSLVEP 397 >gi|257791705|ref|YP_003182311.1| ErfK/YbiS/YcfS/YnhG family protein [Eggerthella lenta DSM 2243] gi|257475602|gb|ACV55922.1| ErfK/YbiS/YcfS/YnhG family protein [Eggerthella lenta DSM 2243] Length = 498 Score = 39.0 bits (90), Expect = 1.7, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Query: 188 EQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVD--RQTP 229 Q G RY+ V++ + +G + S +I G+ D TP Sbjct: 364 SQDWGPRYMDVDLSEQHARFYDASGAIIWESDIITGKPDGEHDTP 408 >gi|297700574|ref|XP_002827314.1| PREDICTED: LOW QUALITY PROTEIN: matrix metalloproteinase-28-like [Pongo abelii] Length = 511 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 10/79 (12%) Query: 94 WPELPIRPLHLGNSSVSVQRLRER----LIISGDLDPSKGLSVAFDAYVESAVKLFQMRH 149 W L +P G Q LR+ L G L+ + + A++ FQ Sbjct: 17 WGRLDAQPAERGG-----QELRKEAEAFLEKYGYLNEQVPKAPT-SSRFSDAIRAFQWVS 70 Query: 150 GLDPSGMVDSSTLEAMNVP 168 L SG++D +TL M P Sbjct: 71 QLPVSGVLDRATLRQMTRP 89 >gi|297159984|gb|ADI09696.1| Peptidoglycan-binding domain 1 protein [Streptomyces bingchenggensis BCW-1] Length = 379 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 15/147 (10%) Query: 82 IAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 + Y+++ + G P+ P+R L V++ L + G ++ + A Sbjct: 112 LPMYRELAA-GRDPDRPLRGL-------DVKQFESNLAMLGY--SGFTVNDTYSQLTADA 161 Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 VK +Q G +G V + + ++ P+ + ++V +L R V V+ P Sbjct: 162 VKRWQRDLGRPRTGKVGTGDIAYVSGPIRIARTSVRVGAQATGNVLSYTSTARSVTVDAP 221 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQT 228 A E G V V D T Sbjct: 222 AGETGWAERGN-----RVTVELPDGHT 243 >gi|288555862|ref|YP_003427797.1| hypothetical protein BpOF4_14280 [Bacillus pseudofirmus OF4] gi|288547022|gb|ADC50905.1| Uncharacterized erfK/srfK family protein, probably secreted [Bacillus pseudofirmus OF4] Length = 164 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIM--FNPY 243 +G Y+++NI L + +G+V V G+ +TP ++ NPY Sbjct: 17 NPALGDPYLIINIETNELAFIYDGQVQRVYRVASGKEGAETPE--GEFTVVVKAENPY 72 >gi|218439324|ref|YP_002377653.1| peptidoglycan-binding protein [Cyanothece sp. PCC 7424] gi|218172052|gb|ACK70785.1| Peptidoglycan-binding domain 1 protein [Cyanothece sp. PCC 7424] Length = 92 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +V+ L+E L G K ++ F Y E +V+ FQ + G+ +G+V+ T +A+N Sbjct: 24 GENVKHLQEFLSQLGHYK--KDINGYFCVYTEKSVRDFQFQIGIPVNGIVERRTWQAINR 81 >gi|170744460|ref|YP_001773115.1| peptidoglycan binding domain-containing protein [Methylobacterium sp. 4-46] gi|168198734|gb|ACA20681.1| Peptidoglycan-binding domain 1 protein [Methylobacterium sp. 4-46] Length = 513 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 14/91 (15%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYV----ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 LR R+I L + + + A+K FQ ++G+ P G+ +N Sbjct: 39 LRSRVIAQVLLIATGHQTSVPTENLGLRTFEAIKRFQEQNGIWPDGV--------LNKST 90 Query: 170 DLRIRQLQVNLMRIK--KLLEQKMGLRYVLV 198 R+ +M + KLLE R + V Sbjct: 91 HDRLFATAAPMMTMWDFKLLEHPSRGRPIWV 121 >gi|147904008|ref|NP_001079285.1| matrix metalloproteinase-21 precursor [Xenopus laevis] gi|50400815|sp|O93470|MMP21_XENLA RecName: Full=Matrix metalloproteinase-21; Short=MMP-21; Short=xMMP; Flags: Precursor gi|3211705|gb|AAC21447.1| matrix metalloproteinase [Xenopus laevis] Length = 604 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 8/107 (7%) Query: 65 SDIPIISKETIAQTEKAIAFYQDILSRGGWPE-LPIRPLHLGNSSVSVQRLRE-RLIISG 122 SD+ + E + ++ Q L++ GW + + P +S+ + L++ L+ G Sbjct: 32 SDLQPSAIEQAELVKDMLSA-QQFLAKYGWTQPVIWDP----SSTNENEPLKDFSLMQEG 86 Query: 123 DLDP-SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 +P + A+K FQ + L +G +D +T+ AMN P Sbjct: 87 VCNPRQEVAEPTKSPQFIDALKKFQKLNNLPVTGTLDDATINAMNKP 133 >gi|270012816|gb|EFA09264.1| matrix metalloproteinase 2 [Tribolium castaneum] Length = 701 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G +D + + A + V A+K Q G+ +G +D TL+ +N P Sbjct: 110 LTRFGYMDATADGAFALRTEESVRDAIKDMQEFAGIPVTGRLDERTLKLLNTP 162 >gi|229818792|ref|YP_002880318.1| Peptidoglycan-binding domain 1 protein [Beutenbergia cavernae DSM 12333] gi|229564705|gb|ACQ78556.1| Peptidoglycan-binding domain 1 protein [Beutenbergia cavernae DSM 12333] Length = 282 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 12/95 (12%) Query: 82 IAFYQDILSRGGWPEL----PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY 137 + Y+ I+ G P++ L G+ V+ L++ L P+ F Sbjct: 186 LNGYR-IVGGGRPPKVVVAQGAAGLKNGDRGPRVKALQQALNRWRSDLPALVADGVFGDL 244 Query: 138 VESAVKLFQMRHGLDP-------SGMVDSSTLEAM 165 E ++ +Q R+ G+ TL A+ Sbjct: 245 TERRLREWQTRNRGGAYPAAAQIDGVAGPLTLAAL 279 >gi|196234288|ref|ZP_03133118.1| Peptidoglycan-binding domain 1 protein [Chthoniobacter flavus Ellin428] gi|196221642|gb|EDY16182.1| Peptidoglycan-binding domain 1 protein [Chthoniobacter flavus Ellin428] Length = 200 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +S V ++RL G + + F A A+ FQ + L SG +D++T+ A+ Sbjct: 141 DSGSLVMSAQDRLNRLGY--SAGPVDGVFGAQTRDALADFQNDNNLPVSGALDTATVRAL 198 >gi|189520793|ref|XP_699803.3| PREDICTED: matrix metalloproteinase-24 [Danio rerio] Length = 608 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Query: 111 VQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + L+ L G L P + + ++SAV Q +G+ +G++D +T+E M P Sbjct: 40 IVELQTWLKNYGYLLPHDIRTSDLRSEKAMQSAVAAMQRFYGIPVTGILDQTTIEWMRKP 99 >gi|302383894|ref|YP_003819717.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Brevundimonas subvibrioides ATCC 15264] gi|302194522|gb|ADL02094.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Brevundimonas subvibrioides ATCC 15264] Length = 253 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 4/66 (6%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM-RHGLDPSGMVDS 159 PL +G+ + V L+ L G G + V+ FQ G+ D Sbjct: 174 PLTIGDEGLGVHVLQAGLHRLGYEPLPDG---RYTDETRITVEAFQRHWRPSKVDGIADG 230 Query: 160 STLEAM 165 T + Sbjct: 231 ETRATL 236 >gi|294851105|ref|ZP_06791778.1| hypothetical protein BAZG_00002 [Brucella sp. NVSL 07-0026] gi|294819694|gb|EFG36693.1| hypothetical protein BAZG_00002 [Brucella sp. NVSL 07-0026] Length = 334 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 44/151 (29%), Gaps = 45/151 (29%) Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 ENGK+ + +G D + P I+Q + + +P Y + Sbjct: 216 ENGKLVVAYPSTIGSSDNPS------------------PSGIVQVE---RIAINPNYTYN 254 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR-NNTYMHDTP 327 I+ +V + PG + + I H TP Sbjct: 255 PKINFKQGNNDKVLII----------------PPGPNGPVGTVWIALSKPTYGI--HGTP 296 Query: 328 EPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 P + GCVR+ N +L + Sbjct: 297 APSRIGKTS---SHGCVRLTNWDAEELAKLV 324 >gi|285019706|ref|YP_003377417.1| protease [Xanthomonas albilineans GPE PC73] gi|283474924|emb|CBA17423.1| putative protease protein [Xanthomonas albilineans] Length = 705 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 23/45 (51%) Query: 140 SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIK 184 +AVK + HG+ + + +L +N PV +QL VN R + Sbjct: 111 NAVKAYAQAHGMQIKSIGGAGSLITLNGPVGTFTKQLAVNFDRYQ 155 >gi|171911413|ref|ZP_02926883.1| hypothetical protein VspiD_09565 [Verrucomicrobium spinosum DSM 4136] Length = 418 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 25/46 (54%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + +L+++ V+VNI A V++G++ + + GR R TP Sbjct: 280 RDVLDREHTDLRVIVNIGAQRAFLVKDGQIAFETPISTGRGPRMTP 325 >gi|154252852|ref|YP_001413676.1| N-acetylmuramoyl-L-alanine amidase [Parvibaculum lavamentivorans DS-1] gi|154156802|gb|ABS64019.1| N-acetylmuramoyl-L-alanine amidase family 2 [Parvibaculum lavamentivorans DS-1] Length = 247 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 19/128 (14%) Query: 54 NFLARVDMGIDSDIPIISKETIAQTEKAIAFYQD-----------ILSRGGW---PELPI 99 + + + I S PI ++ +A ++ A A D G W + Sbjct: 112 KAVEALSLEILSRHPIQARRVLAHSDIAPARKADPGEWFDWARLARAGVGVWVEPEPVGE 171 Query: 100 RP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL-DPSGMV 157 P L G+ +V L+ L G + +D ++ V FQ G+ Sbjct: 172 GPVLREGDRGDTVAELQYLLADYGY---GLEVLGRYDEATKAVVTAFQRHFRPQKVDGVA 228 Query: 158 DSSTLEAM 165 D ST+ + Sbjct: 229 DVSTVTTL 236 >gi|282881828|ref|ZP_06290481.1| putative ErfK family protein [Peptoniphilus lacrimalis 315-B] gi|281298320|gb|EFA90763.1| putative ErfK family protein [Peptoniphilus lacrimalis 315-B] Length = 458 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTPILHSRI 235 +G Y+ V++ + ++GK+ L + ++ G + TP +I Sbjct: 325 NDLGNSYIEVDLARQNAWLYKDGKLILETKIVTGNPGENNATPTGTHKI 373 >gi|188579749|ref|YP_001923194.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] gi|179343247|gb|ACB78659.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium populi BJ001] Length = 364 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 51/156 (32%), Gaps = 48/156 (30%) Query: 204 SLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + A E+GK+ +G ++ P +++ + F+P W + Sbjct: 239 RVRAFGEDGKLTADYPASIGSDEKPAPDGSAKVKAVAFDP-WYT--------------YN 283 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEF--YSRNN 320 P+Y KG + F PG N + I+ Sbjct: 284 PKY---------RFKGVKAT-----------KKFSI--HPGPNNPVGLVWIDLSIP-SYG 320 Query: 321 TYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDV 354 H TP+P V + E+ GC+R+ N DL Sbjct: 321 I--HGTPDP---EKVGKTESHGCIRLTNWDARDLAS 351 >gi|300794469|ref|NP_001178363.1| matrix metallopeptidase 15 (membrane-inserted) [Bos taurus] gi|297485306|ref|XP_002694844.1| PREDICTED: matrix metallopeptidase 15 (membrane-inserted) [Bos taurus] gi|296478084|gb|DAA20199.1| matrix metallopeptidase 15 (membrane-inserted) [Bos taurus] Length = 675 Score = 38.7 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 9/96 (9%) Query: 118 LIISGDLD-PSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L PS+ +S A + SA+ Q +G+ +G++D T M P D Sbjct: 57 LRLYGYLPQPSRHMSTMRSAQILASALAEMQRFYGIPVTGVLDEETKAWMKRPRCGVPDQ 116 Query: 172 RIRQLQVNLMRIKK---LLEQKMGLRYVLVNIPAAS 204 +++ NL R +K L +K ++ +I + Sbjct: 117 FGVRVKANLRRRRKRYALTGRKWNNHHLTFSIQNYT 152 >gi|326931703|ref|XP_003211965.1| PREDICTED: matrix metalloproteinase-24-like [Meleagris gallopavo] Length = 557 Score = 38.7 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V L L G L PS A + V+SAV Q +G+ +G++D +TLE M Sbjct: 14 DVVELEGWLKTYGYLLPSDSQMSAAQSGKAVQSAVATMQRFYGIPVTGVLDQTTLEWMKK 73 Query: 168 P 168 P Sbjct: 74 P 74 >gi|332711166|ref|ZP_08431099.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] gi|332349980|gb|EGJ29587.1| putative peptidoglycan-binding domain-containing protein [Lyngbya majuscula 3L] Length = 108 Score = 38.7 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 11/73 (15%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG---------LD 152 L G + +V+ L++ LI + S F + E AV+ FQ + L Sbjct: 33 LKKGTAGEAVRFLQQLLIC--YMGYSLVFDGQFGSQTEQAVRDFQSYYNSLYKSNPDYLI 90 Query: 153 PSGMVDSSTLEAM 165 G+V T A+ Sbjct: 91 VDGIVGKETYRAI 103 >gi|251795296|ref|YP_003010027.1| carboxyl-terminal protease [Paenibacillus sp. JDR-2] gi|247542922|gb|ACS99940.1| carboxyl-terminal protease [Paenibacillus sp. JDR-2] Length = 472 Score = 38.7 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 96 ELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 +LP L G+ +V+ L+ L G G F+ A+ FQ + L+ + Sbjct: 379 QLPFGTELKTGSFGDNVKTLQLMLQELGY--TPVGDIGLFNGQTADALSRFQKDNKLEAT 436 Query: 155 GMVDSST 161 G + T Sbjct: 437 GTFNDMT 443 >gi|332264806|ref|XP_003281419.1| PREDICTED: matrix metalloproteinase-28 [Nomascus leucogenys] Length = 520 Score = 38.7 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 16/82 (19%) Query: 94 WPELPIRPLHLGNSSVSVQRLRER----LIISGDLD---PSKGLSVAFDAYVESAVKLFQ 146 W L +P G Q LR+ L G L+ P S F A++ FQ Sbjct: 17 WGRLDAQPAERGG-----QELRKEAEAFLEKYGYLNEQVPKAPTSTRFS----DAIRAFQ 67 Query: 147 MRHGLDPSGMVDSSTLEAMNVP 168 L SG++D +TL M P Sbjct: 68 WVSQLPVSGVLDRATLRQMTRP 89 >gi|269956380|ref|YP_003326169.1| peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] gi|269305061|gb|ACZ30611.1| Peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] Length = 360 Score = 38.7 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 R L G V+++++ L +G L + F +AV+ +Q G+ G+V Sbjct: 121 RDLGAGTVGEDVRQIQQLLHDTGFLVADP--TGRFGPATTAAVRAWQRSLGVTVDGVV 176 >gi|307194255|gb|EFN76651.1| Matrix metalloproteinase-14 [Harpegnathos saltator] Length = 547 Score = 38.7 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 13/80 (16%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP------- 168 L G L PS + AF + +A++ FQ GL+ +G ++ T M P Sbjct: 6 LSQYGYLQPSNPENGAFLSSDKLTAAIEEFQAFAGLNITGELNEETARLMATPRCGVKDK 65 Query: 169 ----VDLRIRQLQVNLMRIK 184 D R ++ + R + Sbjct: 66 VGPAADGRSKRYALQGSRWR 85 >gi|332206790|ref|XP_003252478.1| PREDICTED: matrix metalloproteinase-19 [Nomascus leucogenys] Length = 503 Score = 38.7 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 6/81 (7%) Query: 94 WPELPIRPLHLGNSSVSVQRLRER-----LIISGDLDPSKGLSVAFDAY-VESAVKLFQM 147 WP+L + L S V L E L G L S F + A++ FQ Sbjct: 3 WPQLWLGFLLPMTVSGRVLGLAEVAAVDYLSQYGYLQKPLEGSNNFKPEDITEALRAFQE 62 Query: 148 RHGLDPSGMVDSSTLEAMNVP 168 L SG +D +T M P Sbjct: 63 ASELPVSGQLDDATRARMRQP 83 >gi|221194636|ref|ZP_03567693.1| ErfK/YbiS/YcfS/YnhG family protein [Atopobium rimae ATCC 49626] gi|221185540|gb|EEE17930.1| ErfK/YbiS/YcfS/YnhG family protein [Atopobium rimae ATCC 49626] Length = 598 Score = 38.7 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%) Query: 189 QKMGLRYVLVNIPAASLEAV-ENGKVGLRSTVIVGRVD--RQTPI 230 Q G RY+ V++ +NG + + V+ G D TP Sbjct: 464 QDWGKRYIDVDLSEQHARLYDDNGSIIWEADVVTGIPDGHHNTPE 508 >gi|193212428|ref|YP_001998381.1| peptidoglycan-binding domain 1 protein [Chlorobaculum parvum NCIB 8327] gi|193085905|gb|ACF11181.1| Peptidoglycan-binding domain 1 protein [Chlorobaculum parvum NCIB 8327] Length = 616 Score = 38.7 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ-MRHG-LDPSGMVDS 159 L G+ V ++++L G + + F A+ FQ G + G+V Sbjct: 234 LRFGSQGELVHVIQQKLSARGFYEG--KIDSDFGLRTLQALLDFQTAEFGPSEDDGIVGP 291 Query: 160 STLEAM 165 T A+ Sbjct: 292 QTASAL 297 >gi|13472170|ref|NP_103737.1| hypothetical protein mlr2376 [Mesorhizobium loti MAFF303099] gi|14022915|dbj|BAB49523.1| mlr2376 [Mesorhizobium loti MAFF303099] Length = 200 Score = 38.7 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 8/68 (11%) Query: 297 IFRQDPGKINAMASTKIEFY-SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLD 353 F G N + S I+ H TPEP + + GC+R+ N DL Sbjct: 125 PFTIAAGPNNPVGSVWIDLSIESYGI--HGTPEPG---KIGTTFSHGCIRLTNWDAEDLA 179 Query: 354 VWLLKDTP 361 + K T Sbjct: 180 SMVQKGTK 187 >gi|332968027|gb|EGK07114.1| N-acetylmuramoyl-L-alanine amidase [Desmospora sp. 8437] Length = 147 Score = 38.7 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 5/76 (6%) Query: 95 PELPIRP-LHLGNSSVSVQRLRERLIISG-DLDPSKGLSVAFDAYVESAVKLFQMRHG-- 150 P R +G S +V + +RL+ G D G F V+ FQ G Sbjct: 63 KSFPGRSAFQMGKSHPAVTLMGKRLVAHGFDKHYKVGPGPTFSEADRKNVQDFQKAQGWT 122 Query: 151 -LDPSGMVDSSTLEAM 165 D G T + + Sbjct: 123 GSDADGYPGPETWKRL 138 >gi|308799155|ref|XP_003074358.1| putative Helicase SKI2W (ISS) [Ostreococcus tauri] gi|116000529|emb|CAL50209.1| putative Helicase SKI2W (ISS) [Ostreococcus tauri] Length = 1701 Score = 38.7 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 WP + + + + +L+ +G + + F A + A+ FQ ++GL Sbjct: 43 WPMVKQNE----DDIYLMVLIHGKLVDAGFWVGEDDSDDMYFGATTKEALLYFQAQNGLT 98 Query: 153 PSGMVDSSTLEAM 165 +G+VD T A+ Sbjct: 99 ETGLVDDETWRAL 111 >gi|157278511|ref|NP_001098357.1| membrane-type matrix metalloproteinase [Oryzias latipes] gi|67077823|dbj|BAD99513.1| membrane-type matrix metalloproteinase [Oryzias latipes] Length = 610 Score = 38.7 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 6/80 (7%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + + V SA+ Q +GL +G D ST+EAM P D Sbjct: 36 LQQYGYLPPGDLRTHSLRSPHSVSSAIATMQKFYGLTVTGTFDQSTIEAMKRPRCGVPDK 95 Query: 172 RIRQLQVNLMRIKKLLEQKM 191 +L+ NL R K+ Q + Sbjct: 96 FGAELKSNLRRRKRYAYQAL 115 >gi|282555154|gb|ADA82673.1| L,D-transpeptidase [endosymbiont of Polyrhachis macropus] Length = 309 Score = 38.7 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 56/186 (30%), Gaps = 45/186 (24%) Query: 196 VLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L +N + + +G + TP + + R NP W IP I+ Sbjct: 100 IIINSAEMRLYFYPKNSNKIIVFPIGIGEIGNNTPFNWVTSVQRKKHNPVW-IPTKKIRD 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + + G N M + Sbjct: 159 EYL----------------------------------IQGTILPKIIASGPHNPMGLYAL 184 Query: 314 EFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR-YHIEEVV 372 H T F +R + GC+R+ D+ +L ++ P +R I E V Sbjct: 185 YIGKLYAI--HGTNAN--FGIGLR-ISHGCIRL-RADDI-KYLFQNVPLGTRVQFINEPV 237 Query: 373 KTRKTT 378 K + Sbjct: 238 KITQEK 243 >gi|256425043|ref|YP_003125696.1| peptidoglycan-binding domain 1 protein [Chitinophaga pinensis DSM 2588] gi|256039951|gb|ACU63495.1| Peptidoglycan-binding domain 1 protein [Chitinophaga pinensis DSM 2588] Length = 260 Score = 38.7 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 15/32 (46%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 F V+ A FQ +H L P G+V + T Sbjct: 33 ADGVFSREVQQATITFQQKHNLQPDGVVGNKT 64 >gi|254485842|ref|ZP_05099047.1| Putative peptidoglycan binding domain protein [Roseobacter sp. GAI101] gi|214042711|gb|EEB83349.1| Putative peptidoglycan binding domain protein [Roseobacter sp. GAI101] Length = 486 Score = 38.7 bits (89), Expect = 1.9, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 34/69 (49%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L N+S ++ ++L+ L + AFD +++K +Q+ GL P+G++D + Sbjct: 4 LAEPNTSSTIVLEAQKLLNQSALQSRAPENGAFDKSTLNSIKQYQLESGLRPTGILDKTL 63 Query: 162 LEAMNVPVD 170 L+ + Sbjct: 64 LDNLRKSAK 72 >gi|224070919|ref|XP_002187592.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 572 Score = 38.7 bits (89), Expect = 2.0, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P ++ + A+ Q GL +G++D +TLE M P Sbjct: 29 LTKFGYLPPPDPVTGQLQTQEELTKAITAMQRFGGLKATGVLDEATLELMKTP 81 >gi|73995001|ref|XP_852332.1| PREDICTED: similar to matrix metalloproteinase 17 preproprotein [Canis familiaris] Length = 661 Score = 38.7 bits (89), Expect = 2.0, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V + L G L P+ + + A+ Q GL+ +G++D +TL M Sbjct: 110 RVAEMEW-LSRFGYLPPADSTTGQLQTQEELSKAIAAMQRFGGLEATGILDVATLALMKT 168 Query: 168 P 168 P Sbjct: 169 P 169 >gi|153008815|ref|YP_001370030.1| chitinase-like protein [Ochrobactrum anthropi ATCC 49188] gi|151560703|gb|ABS14201.1| chitinase-like protein [Ochrobactrum anthropi ATCC 49188] Length = 323 Score = 38.7 bits (89), Expect = 2.0, Method: Composition-based stats. Identities = 7/24 (29%), Positives = 11/24 (45%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAM 165 ++ FQ GL G+ T A+ Sbjct: 198 IRSFQKAKGLAVDGIAGPRTRSAL 221 >gi|91089485|ref|XP_969495.1| PREDICTED: similar to matrix metalloproteinase [Tribolium castaneum] Length = 632 Score = 38.7 bits (89), Expect = 2.0, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G +D + + A + V A+K Q G+ +G +D TL+ +N P Sbjct: 41 LTRFGYMDATADGAFALRTEESVRDAIKDMQEFAGIPVTGRLDERTLKLLNTP 93 >gi|317508155|ref|ZP_07965838.1| hypothetical protein HMPREF9336_02210 [Segniliparus rugosus ATCC BAA-974] gi|316253566|gb|EFV12953.1| hypothetical protein HMPREF9336_02210 [Segniliparus rugosus ATCC BAA-974] Length = 313 Score = 38.7 bits (89), Expect = 2.0, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ S V ++ L S +D +++ V Q+ GL +G++D +T A Sbjct: 2 GDLSPKVADIKAYLRREFPHASGLNYSELYDERLKAVVANIQILLGLPATGVMDYATQRA 61 >gi|220926346|ref|YP_002501648.1| hypothetical protein Mnod_6576 [Methylobacterium nodulans ORS 2060] gi|219950953|gb|ACL61345.1| protein of unknown function DUF847 [Methylobacterium nodulans ORS 2060] Length = 191 Score = 38.7 bits (89), Expect = 2.0, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 38/113 (33%), Gaps = 33/113 (29%) Query: 81 AIAFYQDILSRGGW---PELPIRPLHLGNSSV-------------SVQRL---------R 115 A+A + + GGW P P P +LG + V+ L R Sbjct: 9 ALA--RVLAHEGGWSDHPADPGGPTNLGVTQATLSAWLGRPATRAEVKALTPASVAPLYR 66 Query: 116 ERL--IISGDLDPSKGLSVAFDAYVESAVKL----FQMRHGLDPSGMVDSSTL 162 R + GD P+ FD V S V+ Q G+ G + TL Sbjct: 67 ARFWDAVHGDALPAGVDLAVFDLAVNSGVRRAAMALQRAVGVADDGRIGPMTL 119 >gi|162448546|ref|YP_001610913.1| hypothetical protein sce0276 [Sorangium cellulosum 'So ce 56'] gi|161159128|emb|CAN90433.1| hypothetical protein sce0276 [Sorangium cellulosum 'So ce 56'] Length = 885 Score = 38.7 bits (89), Expect = 2.0, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 RL G + + D ++++ FQ H L+P+G +D +T Sbjct: 833 RLKNLGYYRGAGKGEI--DDETRASLRRFQSDHALEPTGELDGAT 875 >gi|307945814|ref|ZP_07661150.1| secretion activator protein [Roseibium sp. TrichSKD4] gi|307771687|gb|EFO30912.1| secretion activator protein [Roseibium sp. TrichSKD4] Length = 270 Score = 38.7 bits (89), Expect = 2.0, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 9/72 (12%) Query: 119 IISGDLDPSKGLSVAFDAYVES----AVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 ++GD P+ FD V S A+K Q G P G++ + TL + V+ Sbjct: 71 AVAGDQLPAGVDYAVFDYAVNSGPRRAIKELQRVVGAKPDGIIGNETLSKVGEAVEA--- 127 Query: 175 QLQVNL--MRIK 184 + VNL R++ Sbjct: 128 TVIVNLCEQRMR 139 >gi|282555177|gb|ADA82690.1| L,D-transpeptidase [Candidatus Blochmannia sansabeanus] Length = 315 Score = 38.7 bits (89), Expect = 2.0, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 63/197 (31%), Gaps = 47/197 (23%) Query: 196 VLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 +++N L N + + +G ++ TP YW+ S+ K Sbjct: 102 IVINSAEMRLYYYPANSNTVITLPIAIGTIENATPY------------YWI--TSVKHK- 146 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 +++P ++ N+ K EV G N M + Sbjct: 147 -----KKNPIWIPTKNMRDEYIKRGEVLPTIF--------------PAGSNNPMGLYALY 187 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSR-----YHIE 369 H T F +R T GC+R+ D+ +L K P ++ I+ Sbjct: 188 LGQNYAI--HGTNSN--FGIGLR-VTRGCIRL-RPKDI-EFLFKIVPVGTKVQFINEPIK 240 Query: 370 EVVKTRKTTPVKLATEV 386 ++T +++ + Sbjct: 241 STIETNGMQYLEVHNPL 257 >gi|295094743|emb|CBK83834.1| Putative peptidoglycan binding domain./Stage II sporulation protein. [Coprococcus sp. ART55/1] Length = 410 Score = 38.7 bits (89), Expect = 2.0, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL---SVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V +L+ +L P+ G + AV+ FQ L + Sbjct: 326 PGYELTIGSSGDKVSQLQRQLARIALNYPAIGTVTVDGVYGQNTADAVRKFQQIFNLPVT 385 Query: 155 GMVDSSTLE 163 G+ D T Sbjct: 386 GVTDYKTWY 394 >gi|91793495|ref|YP_563146.1| lytic murein transglycosylase [Shewanella denitrificans OS217] gi|91715497|gb|ABE55423.1| Lytic murein transglycosylase [Shewanella denitrificans OS217] Length = 437 Score = 38.7 bits (89), Expect = 2.0, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 ++ L+E+L G + ++ FQ GL G ST A+ +P Sbjct: 378 SVIKALQEKLNQLGF--DVGEPDGVLGRNSMAGLQAFQRSKGLIADGYPGQSTFNALGLP 435 >gi|18413635|dbj|BAA82707.2| membrane-type-4 matrix metalloproteinase [Homo sapiens] Length = 606 Score = 38.7 bits (89), Expect = 2.0, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 59 LSRFGYLPPADPTTGQLQTQEELSKAITAMQQFGGLEATGILDEATLALMKTPRCSLPDL 118 Query: 176 LQVNLMRIKKLLEQK 190 + R ++ Sbjct: 119 PVLTQARRRRQAPAP 133 >gi|296329732|ref|ZP_06872217.1| murein transglycosylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674129|ref|YP_003865801.1| murein transglycosylase [Bacillus subtilis subsp. spizizenii str. W23] gi|296153230|gb|EFG94094.1| murein transglycosylase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412373|gb|ADM37492.1| murein transglycosylase [Bacillus subtilis subsp. spizizenii str. W23] Length = 167 Score = 38.7 bits (89), Expect = 2.1, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 6/65 (9%) Query: 186 LLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP--- 242 L + ++ V+I A +L +N +V + VG++ QTPI I NP Sbjct: 51 LPDPNTIPYHIAVSIGAKTLTLYQNNQVIKTYPIAVGKILTQTPIGEFYIINRQRNPGGP 110 Query: 243 ---YW 244 YW Sbjct: 111 FGAYW 115 >gi|304360975|ref|YP_003857157.1| gp26 [Mycobacterium phage LeBron] gi|302858244|gb|ADL70993.1| gp26 [Mycobacterium phage LeBron] Length = 343 Score = 38.7 bits (89), Expect = 2.1, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 10/74 (13%) Query: 104 LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR----------HGLDP 153 G+S V RE+L L+ +DA + + FQ+R L Sbjct: 14 PGDSGTQVLAAREKLKAKFSYGKHLKLTTLYDAELLPVLVEFQLRTNVQRALTGKQLLRV 73 Query: 154 SGMVDSSTLEAMNV 167 G++D +T A+ + Sbjct: 74 DGILDYATQVALGI 87 >gi|242000886|ref|XP_002435086.1| matrix metalloproteinase, putative [Ixodes scapularis] gi|215498416|gb|EEC07910.1| matrix metalloproteinase, putative [Ixodes scapularis] Length = 550 Score = 38.7 bits (89), Expect = 2.1, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G + P + + A + + AVK FQ GL +G VD+ T M +P Sbjct: 5 LEKFGYIAPPRNGTAALRSQQALVDAVKDFQRFAGLRVTGRVDNETATMMQLP 57 >gi|148378889|ref|YP_001253430.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A str. ATCC 3502] gi|153933529|ref|YP_001383270.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A str. ATCC 19397] gi|153934554|ref|YP_001386819.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A str. Hall] gi|148288373|emb|CAL82450.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152929573|gb|ABS35073.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A str. ATCC 19397] gi|152930468|gb|ABS35967.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A str. Hall] gi|322805217|emb|CBZ02781.1| protein erfK/srfK precursor [Clostridium botulinum H04402 065] Length = 125 Score = 38.7 bits (89), Expect = 2.1, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 19/48 (39%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++++N +L V V VG+ TP + +I NP Sbjct: 17 HIIINTQTHTLTLFRGNNVYRTYKVAVGKPSTPTPKGNFKIINRAINP 64 >gi|299069644|emb|CBJ40917.1| membrane-bound lytic murein transglycosylase b protein [Ralstonia solanacearum CMR15] Length = 427 Score = 38.7 bits (89), Expect = 2.1, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 N++ +++L++RL G DP + D ++A++ +Q L G S L + Sbjct: 368 NNATDIKQLQQRLADKGY-DPGTIDGLIGDRT-QAAIRAYQKDQHLPQDGYASRSLLARL 425 >gi|239832320|ref|ZP_04680649.1| N-acetylmuramoyl-L-alanine amidase [Ochrobactrum intermedium LMG 3301] gi|239824587|gb|EEQ96155.1| N-acetylmuramoyl-L-alanine amidase [Ochrobactrum intermedium LMG 3301] Length = 268 Score = 38.7 bits (89), Expect = 2.1, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 4/65 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDSS 160 L G + V+ L+ L + G ++ FD E+ +K FQ G+ D S Sbjct: 195 LARGENGQPVEALQSMLALYGY---GIAITGIFDEDTETVIKAFQRHFRPQNVDGVADVS 251 Query: 161 TLEAM 165 T++ + Sbjct: 252 TIDTL 256 >gi|154685104|ref|YP_001420265.1| YkuG [Bacillus amyloliquefaciens FZB42] gi|154350955|gb|ABS73034.1| YkuG [Bacillus amyloliquefaciens FZB42] Length = 761 Score = 38.7 bits (89), Expect = 2.2, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 17/43 (39%) Query: 133 AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 FD + +A+ FQ L G+ T ++ V R+ Sbjct: 239 IFDENMRTALINFQKFSALPADGVAGMQTWASLLVSKGDEDRK 281 >gi|159042720|ref|YP_001531514.1| lytic murein transglycosylase [Dinoroseobacter shibae DFL 12] gi|157910480|gb|ABV91913.1| lytic murein transglycosylase [Dinoroseobacter shibae DFL 12] Length = 389 Score = 38.7 bits (89), Expect = 2.2, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 2/62 (3%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P G + +++L+++L G + A +AV+ Q R GL Sbjct: 319 GAPVFDAGNPEPGLNDAQMKQLQQKLAARGY--DVGAVDGILGARTRAAVRAEQQRLGLP 376 Query: 153 PS 154 Sbjct: 377 AD 378 >gi|54311164|gb|AAH45610.1| MMP17 protein [Homo sapiens] Length = 606 Score = 38.7 bits (89), Expect = 2.2, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 59 LSRFGYLPPADPTTGQLQTQEELSKAITAMQQFGGLEATGILDEATLALMKTPRCSLPDL 118 Query: 176 LQVNLMRIKKLLEQK 190 + R ++ Sbjct: 119 PVLTQARRRRQAPAP 133 >gi|224541968|ref|ZP_03682507.1| hypothetical protein CATMIT_01141 [Catenibacterium mitsuokai DSM 15897] gi|224525108|gb|EEF94213.1| hypothetical protein CATMIT_01141 [Catenibacterium mitsuokai DSM 15897] Length = 502 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 N + S+ + L + G +P + F V A+K F+ HGL G++ Sbjct: 421 NVNNSIIVMERLLEVLGY-NPGRTDG-YFSQGVSDALKRFEQDHGLTVDGVL 470 >gi|182701744|ref|ZP_02955106.1| LycA [Clostridium botulinum NCTC 2916] gi|182668788|gb|EDT80766.1| LycA [Clostridium botulinum NCTC 2916] Length = 54 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 17/49 (34%) Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 LI G S G F +A+K Q L G+V T + Sbjct: 1 MLINIGYPVGSYGADRVFGNGTVTAIKALQRDCNLSVDGVVGKETWGVL 49 >gi|37589932|gb|AAH40507.2| MMP17 protein [Homo sapiens] Length = 606 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 59 LSRFGYLPPADPTTGQLQTQEELSKAITAMQQFGGLEATGILDEATLALMKTPRCSLPDL 118 Query: 176 LQVNLMRIKKLLEQK 190 + R ++ Sbjct: 119 PVLTQARRRRQAPAP 133 >gi|319899254|ref|YP_004159347.1| peptidoglycan-binding protein [Bartonella clarridgeiae 73] gi|319403218|emb|CBI76777.1| peptidoglycan-binding protein [Bartonella clarridgeiae 73] Length = 420 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ RL GD + + + A+K FQ+RHGL+ +G TL + Sbjct: 365 ELQSRLAKLGDYEGEIDGKIG--TASKKAIKAFQLRHGLETNGYPSYETLSHI 415 >gi|304406255|ref|ZP_07387912.1| Peptidoglycan-binding domain 1 protein [Paenibacillus curdlanolyticus YK9] gi|304344839|gb|EFM10676.1| Peptidoglycan-binding domain 1 protein [Paenibacillus curdlanolyticus YK9] Length = 434 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 18/78 (23%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLD---------PSKGLSVAFDAYVESAVKLFQMR 148 P L G + +V ++ G L+ P + FD E AVK FQ Sbjct: 350 PGHELKKGMTDPAVGAMK------GFLNVIRKSYPAIPQLNATDLFDEQTEKAVKKFQEI 403 Query: 149 H--GLD-PSGMVDSSTLE 163 + L +G+V+ T Sbjct: 404 NKKKLKVANGIVNEPTWR 421 >gi|112382270|ref|NP_057239.4| matrix metalloproteinase-17 preproprotein [Homo sapiens] gi|296439485|sp|Q9ULZ9|MMP17_HUMAN RecName: Full=Matrix metalloproteinase-17; Short=MMP-17; AltName: Full=Membrane-type matrix metalloproteinase 4; Short=MT-MMP 4; Short=MTMMP4; AltName: Full=Membrane-type-4 matrix metalloproteinase; Short=MT4-MMP; Short=MT4MMP; Flags: Precursor Length = 603 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 56 LSRFGYLPPADPTTGQLQTQEELSKAITAMQQFGGLEATGILDEATLALMKTPRCSLPDL 115 Query: 176 LQVNLMRIKKLLEQK 190 + R ++ Sbjct: 116 PVLTQARRRRQAPAP 130 >gi|31543257|ref|NP_035976.3| matrix metalloproteinase-17 precursor [Mus musculus] gi|30354087|gb|AAH51917.1| Matrix metallopeptidase 17 [Mus musculus] gi|148687566|gb|EDL19513.1| matrix metallopeptidase 17 [Mus musculus] Length = 578 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 13/86 (15%) Query: 87 DILSRGG--WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD--AYVESAV 142 + + GG P L LG L G L P+ S + A+ Sbjct: 31 ALAAHGGCAAPAPRAEDLSLGVEW---------LSRFGYLPPADPASGQLQTQEELSKAI 81 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVP 168 Q GL+ +G++D +TL M P Sbjct: 82 TAMQQFGGLETTGILDEATLALMKTP 107 >gi|21624137|dbj|BAA82708.2| membrane-type-4 matrix metalloproteinase [Mus musculus] Length = 578 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 13/86 (15%) Query: 87 DILSRGG--WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD--AYVESAV 142 + + GG P L LG L G L P+ S + A+ Sbjct: 31 ALAAHGGCAAPAPRAEDLSLGVEW---------LSRFGYLPPADPASGQLQTQEELSKAI 81 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVP 168 Q GL+ +G++D +TL M P Sbjct: 82 TAMQQFGGLETTGILDEATLALMKTP 107 >gi|300813344|ref|ZP_07093695.1| excinuclease ABC, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512487|gb|EFK39636.1| excinuclease ABC, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 1208 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 10/103 (9%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 +K FQ + SG +D+ T EA+ D ++ + N G ++ VN Sbjct: 985 IKKFQATMNIPISGTLDNKTKEAL-YNKDYKVWDMVTN--------PPSKGY-WIAVNKS 1034 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L K + V +G QTP +I + NP W Sbjct: 1035 RRILTMYMGDKSLGKYPVTLGTSATQTPSGRGKIGNMHKNPAW 1077 >gi|169731509|gb|ACA64881.1| matrix metalloproteinase 24 preproprotein (predicted) [Callicebus moloch] Length = 595 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 RL L G L P + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 30 RLANWLKSYGYLLPYDSRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 87 >gi|170759637|ref|YP_001786273.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A3 str. Loch Maree] gi|169406626|gb|ACA55037.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum A3 str. Loch Maree] Length = 125 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 21/48 (43%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++++N +L ++ V V VG+ TP + +I NP Sbjct: 17 HIIINTQTHTLTLFKDNNVYKTYKVAVGKPSTPTPKGNFKIINRAINP 64 >gi|146386380|gb|ABQ23978.1| membrane-type 3 matrix metalloproteinase [Oryctolagus cuniculus] Length = 122 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P+ ++SA+ Q +G++ +G V +T++ M P Sbjct: 47 LQKYGYLPPTDPRMSVLRSAETMQSALAAMQQFYGINMTGKVGRNTIDWMKKP 99 >gi|148653730|ref|YP_001280823.1| ErfK/YbiS/YcfS/YnhG family protein [Psychrobacter sp. PRwf-1] gi|148572814|gb|ABQ94873.1| ErfK/YbiS/YcfS/YnhG family protein [Psychrobacter sp. PRwf-1] Length = 417 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 23/152 (15%), Positives = 43/152 (28%), Gaps = 51/152 (33%) Query: 204 SLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 +L A + + K+ VG +P ++ + +P Sbjct: 301 TLYAYDKDNKLVASYPTTVGSTATPSPTGTHKVKVKVSDP-------------------- 340 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR-NNT 321 N D GK+ + PG N + I Sbjct: 341 -------NYTHTDADGKQTVL-----------------PPGPNNPVGRVWIGLDKPSYGI 376 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 H +P+P + R ++GC+R+ N + Sbjct: 377 --HGSPDP---ERISRQASAGCIRLTNWDAMA 403 >gi|297693480|ref|XP_002824046.1| PREDICTED: matrix metalloproteinase-17-like, partial [Pongo abelii] Length = 181 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 2 LSRFGYLPPADPTTGQLQTQEELSKAITAMQQFGGLEATGILDEATLALMKTPRCSLPDL 61 Query: 176 LQVNLMRIKKLLEQK 190 + R ++ Sbjct: 62 PVLTQARRRRQAPAP 76 >gi|114647860|ref|XP_509485.2| PREDICTED: matrix metalloproteinase-17 [Pan troglodytes] Length = 604 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 56 LSRFGYLPPADPTTGQLQTQEELSKAITAMQQFGGLEATGILDEATLALMKTPRCSLPDL 115 Query: 176 LQVNLMRIKKLLEQK 190 + R ++ Sbjct: 116 PVLTQARRRRQAPAP 130 >gi|109128713|ref|XP_001101050.1| PREDICTED: matrix metalloproteinase-15 [Macaca mulatta] Length = 669 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 9/96 (9%) Query: 118 LIISGDLD-PSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L PS+ +S A + SA+ Q +G+ +G++D T E M P D Sbjct: 57 LRLYGYLPQPSRHMSTMRSAQILASALAEMQRFYGIPVTGVLDEETKEWMKRPRCGVPDQ 116 Query: 172 RIRQLQVNLMRIKK---LLEQKMGLRYVLVNIPAAS 204 +++ NL R +K L +K ++ +I + Sbjct: 117 FGVRVKANLRRRRKRYALTGRKWNNHHLTFSIQNYT 152 >gi|307332608|ref|ZP_07611652.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306881741|gb|EFN12883.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 246 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 41/128 (32%), Gaps = 27/128 (21%) Query: 47 IVNDRFD--NFLARVDMGIDSDIPIISKETIAQTE--KAIAFYQ----DILSRGGWPELP 98 +D + A G+ + P + + + + A Y +LSR GW + Sbjct: 135 PWSDHGNSGKGTAATAHGVFAYQPGKTYPCAVRRKNGQLYAGYSTTRTAVLSRPGWDVVE 194 Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES-AVKLFQMRHGLDPSGMV 157 + L L G D + + AVK Q + GL G+V Sbjct: 195 AQCL------------------LDHLGFDPGGVDGVDGEMTTRAVKRLQEKAGLATDGLV 236 Query: 158 DSSTLEAM 165 T + + Sbjct: 237 GPQTWKVL 244 >gi|296199747|ref|XP_002747296.1| PREDICTED: matrix metalloproteinase-24 [Callithrix jacchus] Length = 595 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 RL L G L P + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 30 RLANWLKSYGYLLPYDSRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 87 >gi|255019748|ref|ZP_05291825.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus caldus ATCC 51756] gi|254970816|gb|EET28301.1| ErfK/YbiS/YcfS/YnhG family protein [Acidithiobacillus caldus ATCC 51756] Length = 358 Score = 38.3 bits (88), Expect = 2.2, Method: Composition-based stats. Identities = 26/152 (17%), Positives = 48/152 (31%), Gaps = 39/152 (25%) Query: 196 VLVNIPAASLEAVENGK-VGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKD 254 ++V+IPA L + V V V + + + I + P W +P++I Sbjct: 98 IVVDIPARRLYYFPADRHVVFTYPVGVFLPGWKESLTTTSIIQKFKMPAWNVPKNIH--- 154 Query: 255 MMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIE 314 ++ F ++ W PG N M +E Sbjct: 155 ---------------------AWFEKKFHMDIPWYW----------PPGAENPMGELAME 183 Query: 315 FYSRNNTYMHDTPEPILFNNVVRFETSGCVRV 346 ++H T P +R + GC ++ Sbjct: 184 TGLS-GIFIHGTYHPW--GVGMRA-SQGCFQM 211 >gi|332222943|ref|XP_003260629.1| PREDICTED: LOW QUALITY PROTEIN: matrix metalloproteinase-14-like [Nomascus leucogenys] Length = 582 Score = 38.3 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|4826834|ref|NP_004986.1| matrix metalloproteinase-14 preproprotein [Homo sapiens] gi|317373419|sp|P50281|MMP14_HUMAN RecName: Full=Matrix metalloproteinase-14; Short=MMP-14; AltName: Full=MMP-X1; AltName: Full=Membrane-type matrix metalloproteinase 1; Short=MT-MMP 1; Short=MTMMP1; AltName: Full=Membrane-type-1 matrix metalloproteinase; Short=MT1-MMP; Short=MT1MMP; Flags: Precursor gi|963054|emb|CAA88372.1| membrane-type matrix metalloproteinase 1 [Homo sapiens] gi|1127837|gb|AAA83770.1| membrane-type matrix metalloproteinase-1 [Homo sapiens] gi|119586641|gb|EAW66237.1| matrix metallopeptidase 14 (membrane-inserted), isoform CRA_b [Homo sapiens] gi|168277826|dbj|BAG10891.1| matrix metalloproteinase-14 precursor [synthetic construct] Length = 582 Score = 38.3 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|328542952|ref|YP_004303061.1| N-acetylmuramoyl-L-alanine amidase domain protein [polymorphum gilvum SL003B-26A1] gi|326412698|gb|ADZ69761.1| N-acetylmuramoyl-L-alanine amidase domain protein [Polymorphum gilvum SL003B-26A1] Length = 253 Score = 38.3 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 4/65 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDSS 160 G + V+ L+ L + G +S FDA +AV FQ + G+ D S Sbjct: 181 FQEGEAGQPVEALQSMLALYGY---DVPISGVFDARTRAAVAAFQRHFRPERVDGIADVS 237 Query: 161 TLEAM 165 T+ + Sbjct: 238 TIVTL 242 >gi|254718270|ref|ZP_05180081.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. 83/13] gi|265983231|ref|ZP_06095966.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. 83/13] gi|306838217|ref|ZP_07471070.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. NF 2653] gi|264661823|gb|EEZ32084.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella sp. 83/13] gi|306406697|gb|EFM62923.1| ErfK/YbiS/YcfS/YnhG [Brucella sp. NF 2653] Length = 241 Score = 38.3 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%) Query: 268 DNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA-STKIEFYSRNNT-Y-MH 324 N+ + + E+ PE + RQ+PG N + + + +T Y +H Sbjct: 142 RANVEYKKQWPRWTPPPEMIQRKPELEKYRNRQEPGPTNPLGARALYIYQNGRDTGYRIH 201 Query: 325 DTPEPILFNNVVRFETSGCVRVRN 348 +PE + +SGC+R+ N Sbjct: 202 GSPEWWSIGQSM---SSGCIRLMN 222 >gi|332227957|ref|XP_003263157.1| PREDICTED: LOW QUALITY PROTEIN: matrix metalloproteinase-15-like [Nomascus leucogenys] Length = 753 Score = 38.3 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 9/96 (9%) Query: 118 LIISGDLD-PSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L PS+ +S A + SA+ Q +G+ +G++D T E M P D Sbjct: 141 LRLYGYLPQPSRHMSTMRSAQILASALAEMQRFYGIPVTGVLDEETKEWMKRPRCGVPDQ 200 Query: 172 RIRQLQVNLMRIKK---LLEQKMGLRYVLVNIPAAS 204 +++ NL R +K L +K ++ +I + Sbjct: 201 FGVRVKANLRRRRKRYALTGRKWNNHHLTFSIQNYT 236 >gi|325927923|ref|ZP_08189147.1| hypothetical protein XPE_3188 [Xanthomonas perforans 91-118] gi|325541763|gb|EGD13281.1| hypothetical protein XPE_3188 [Xanthomonas perforans 91-118] Length = 309 Score = 38.3 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 6/51 (11%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 G N + I+ + Y +H TPEP +V + E+ GCVR+ N Sbjct: 246 PAGPNNPVGRVWIDLSKPH--YGLHGTPEPG---HVGKTESHGCVRLTNWD 291 >gi|109082872|ref|XP_001100232.1| PREDICTED: matrix metalloproteinase-14-like [Macaca mulatta] Length = 582 Score = 38.3 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|47564866|ref|ZP_00235910.1| putative peptidoglycan binding domain protein [Bacillus cereus G9241] gi|47558239|gb|EAL16563.1| putative peptidoglycan binding domain protein [Bacillus cereus G9241] Length = 592 Score = 38.3 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 3/74 (4%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L G++ V + LI +G P G + A V + +K FQ L +G+ D T Sbjct: 216 LKEGSTGPFVYLFQAALIFNGYDVPFDGK---YSAAVTTQLKQFQNFSLLKATGISDFQT 272 Query: 162 LEAMNVPVDLRIRQ 175 ++ V RQ Sbjct: 273 WASLLVSTGDTERQ 286 >gi|255083567|ref|XP_002508358.1| predicted protein [Micromonas sp. RCC299] gi|226523635|gb|ACO69616.1| predicted protein [Micromonas sp. RCC299] Length = 294 Score = 38.3 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 21/54 (38%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L V+ L+ L G + FD AVK +Q +HG+ SG Sbjct: 102 LQQEMRGDEVKELQRFLQEESFFMHRGGPTGHFDRETRDAVKAWQRKHGVVQSG 155 >gi|114652043|ref|XP_001157566.1| PREDICTED: matrix metalloproteinase 14 isoform 2 [Pan troglodytes] Length = 545 Score = 38.3 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|114652041|ref|XP_001157686.1| PREDICTED: matrix metalloproteinase-14 isoform 4 [Pan troglodytes] Length = 582 Score = 38.3 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|804994|emb|CAA58519.1| MT-MMP [Homo sapiens] gi|40675475|gb|AAH64803.1| Matrix metallopeptidase 14 (membrane-inserted) [Homo sapiens] gi|54781371|gb|AAV40837.1| matrix metalloproteinase 14 (membrane-inserted) [Homo sapiens] gi|158256086|dbj|BAF84014.1| unnamed protein product [Homo sapiens] Length = 582 Score = 38.3 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|1495995|emb|CAA62432.1| MT-MMP protein [Homo sapiens] Length = 582 Score = 38.3 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|793763|dbj|BAA05519.1| membrane-type matrix metalloproteinase [Homo sapiens] Length = 582 Score = 38.3 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|327285686|ref|XP_003227564.1| PREDICTED: matrix metalloproteinase-14-like, partial [Anolis carolinensis] Length = 542 Score = 38.3 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G DS TL+AM P D Sbjct: 3 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLQVTGKSDSETLKAMKRPRCGVPDK 62 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 63 FGAEIKANVRRRR 75 >gi|319406116|emb|CBI79746.1| peptidoglycan-binding protein [Bartonella sp. AR 15-3] Length = 418 Score = 38.3 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ RL GD + + A+K FQ+RHGL+ +G TL + Sbjct: 365 ELQSRLEKLGDYQGEIDGKIG--TASKKAIKAFQLRHGLEANGYPSYETLSHI 415 >gi|225628550|ref|ZP_03786584.1| lytic murein transglycosylase [Brucella ceti str. Cudo] gi|237816592|ref|ZP_04595584.1| lytic murein transglycosylase [Brucella abortus str. 2308 A] gi|225616396|gb|EEH13444.1| lytic murein transglycosylase [Brucella ceti str. Cudo] gi|237787405|gb|EEP61621.1| lytic murein transglycosylase [Brucella abortus str. 2308 A] Length = 429 Score = 38.3 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ L G D + + + +A++ FQ R+GL+P G L + Sbjct: 376 ELQTHLKALGYYDGNIDGKIGATSR--AAIEAFQQRNGLEPDGHPSKEVLSVL 426 >gi|118098430|ref|XP_415092.2| PREDICTED: similar to membrane-type-4 matrix metalloproteinase [Gallus gallus] Length = 592 Score = 38.3 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P ++ + A+ Q GL+ +G++D +TLE M P Sbjct: 50 LTKFGYLPPPDPITGQLQTQEELTKAITAMQRFGGLEATGVLDEATLELMKTP 102 >gi|188583441|ref|YP_001926886.1| peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] gi|179346939|gb|ACB82351.1| Peptidoglycan-binding domain 1 protein [Methylobacterium populi BJ001] Length = 252 Score = 38.3 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 6/64 (9%) Query: 111 VQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS----GMVDSSTLEAMN 166 V ++ L+ G G A +AV FQ L G + T+ A+ Sbjct: 3 VAEIQRALLARGYDLGPSGADNALGRLTIAAVTAFQKAEKL--DILYPGTIGPKTIAALG 60 Query: 167 VPVD 170 V Sbjct: 61 VSAA 64 >gi|302876661|ref|YP_003845294.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|307687336|ref|ZP_07629782.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|302579518|gb|ADL53530.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] Length = 444 Score = 38.3 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLDPSKGLSV--AFDAYVESAVKLFQMRHGLDPS 154 P PL +G S V+ ++ L IS + V +D AVK FQ L S Sbjct: 328 PGYPLGVGESGEYVKTVQTYLNFISEYYPVIDKIDVNGHYDIKTAIAVKKFQELFSLSGS 387 Query: 155 GMVDSSTLEAM 165 G+VD +T ++ Sbjct: 388 GIVDFATWYSI 398 >gi|297698857|ref|XP_002826519.1| PREDICTED: matrix metalloproteinase-15-like [Pongo abelii] Length = 669 Score = 38.3 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 9/96 (9%) Query: 118 LIISGDLD-PSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L PS+ +S A + SA+ Q +G+ +G++D T E M P D Sbjct: 57 LRLYGYLPQPSRHMSTMRSAQILASALAEMQRFYGIPVTGVLDEETKEWMKRPRCGVPDQ 116 Query: 172 RIRQLQVNLMRIKK---LLEQKMGLRYVLVNIPAAS 204 +++ NL R +K L +K ++ +I + Sbjct: 117 FGVRVKANLRRRRKRYALTGRKWNNHHLTFSIQNYT 152 >gi|291523484|emb|CBK81777.1| Putative peptidoglycan binding domain [Coprococcus catus GD/7] Length = 422 Score = 38.3 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S VQ+++E+L D P + AV+ FQ L + Sbjct: 338 PGYDLTIGSSGQKVQQMQEQLNRISDNYPAIPKIAADGIYGNQTAEAVRTFQKIFNLPQT 397 Query: 155 GMVDSSTLE 163 G+ D +T Sbjct: 398 GVTDYATWY 406 >gi|227485310|ref|ZP_03915626.1| ErfK/YbiS/YcfS/YnhG family protein [Anaerococcus lactolyticus ATCC 51172] gi|227236770|gb|EEI86785.1| ErfK/YbiS/YcfS/YnhG family protein [Anaerococcus lactolyticus ATCC 51172] Length = 481 Score = 38.3 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 48/174 (27%), Gaps = 53/174 (30%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRS 249 +G Y+ V++ + ++G+V L + ++ G + + S Sbjct: 339 DLGSTYIEVDLSRQYMWYYQDGQVVLETPIVSGLPNT-----TKWATNVGVG-------S 386 Query: 250 IIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMA 309 I++K LR D + + + W+ G+ Sbjct: 387 ILEKASNKTLRGD-------GFDGSRYETPVKYWMPIGWD-------------GEG---- 422 Query: 310 STKIEFYSRNNTYMHDTPEPILFNNVVRF--ETSGCVRVRNIIDLDVWLLKDTP 361 HD P F + F + GC + + L P Sbjct: 423 -------------FHDAPWRGAFGGAIYFSNGSHGC--LNMPPAMAKKLFDLAP 461 >gi|260836059|ref|XP_002613024.1| hypothetical protein BRAFLDRAFT_266228 [Branchiostoma floridae] gi|229298407|gb|EEN69033.1| hypothetical protein BRAFLDRAFT_266228 [Branchiostoma floridae] Length = 494 Score = 38.3 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 6/57 (10%) Query: 118 LIISGDLD------PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G LD S D V AV LFQ L +G +D T++ M++P Sbjct: 28 LTKYGYLDDGMMSKASDMTPTEMDDMVRDAVMLFQEMAHLPMTGRLDEMTMQQMSMP 84 >gi|217976443|ref|YP_002360590.1| hypothetical protein Msil_0248 [Methylocella silvestris BL2] gi|217501819|gb|ACK49228.1| hypothetical protein Msil_0248 [Methylocella silvestris BL2] Length = 286 Score = 38.3 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 11/72 (15%) Query: 105 GNSSVSVQRLRERLIISGD--LDPSKGLSVAFDAYVESAVKLFQM--RHGL-------DP 153 G+ V +++ L I G ++ ++ + AV ++ R+ L P Sbjct: 28 GDRGQHVALIQQALTILGAGLIEANEITREFYGPSTSRAVLKYKGPPRNILNTELRQTKP 87 Query: 154 SGMVDSSTLEAM 165 +V T+ + Sbjct: 88 DAIVGKRTIAWL 99 >gi|4505211|ref|NP_002419.1| matrix metalloproteinase-15 preproprotein [Homo sapiens] gi|1705988|sp|P51511|MMP15_HUMAN RecName: Full=Matrix metalloproteinase-15; Short=MMP-15; AltName: Full=Membrane-type matrix metalloproteinase 2; Short=MT-MMP 2; Short=MTMMP2; AltName: Full=Membrane-type-2 matrix metalloproteinase; Short=MT2-MMP; Short=MT2MMP; AltName: Full=SMCP-2; Flags: Precursor gi|963056|emb|CAA88373.1| membrane-type matrix metalloproteinase 2 [Homo sapiens] gi|33585869|gb|AAH55428.1| Matrix metallopeptidase 15 (membrane-inserted) [Homo sapiens] gi|54673588|gb|AAH36495.1| Matrix metallopeptidase 15 (membrane-inserted) [Homo sapiens] gi|116069818|gb|ABJ53423.1| matrix metallopeptidase 15 (membrane-inserted) [Homo sapiens] gi|119603371|gb|EAW82965.1| matrix metallopeptidase 15 (membrane-inserted), isoform CRA_a [Homo sapiens] gi|119603372|gb|EAW82966.1| matrix metallopeptidase 15 (membrane-inserted), isoform CRA_a [Homo sapiens] gi|261858710|dbj|BAI45877.1| matrix metallopeptidase 15 [synthetic construct] Length = 669 Score = 38.3 bits (88), Expect = 2.4, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 9/96 (9%) Query: 118 LIISGDLD-PSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L PS+ +S A + SA+ Q +G+ +G++D T E M P D Sbjct: 57 LRLYGYLPQPSRHMSTMRSAQILASALAEMQRFYGIPVTGVLDEETKEWMKRPRCGVPDQ 116 Query: 172 RIRQLQVNLMRIKK---LLEQKMGLRYVLVNIPAAS 204 +++ NL R +K L +K ++ +I + Sbjct: 117 FGVRVKANLRRRRKRYALTGRKWNNHHLTFSIQNYT 152 >gi|326672700|ref|XP_001342721.4| PREDICTED: matrix metalloproteinase-21-like [Danio rerio] Length = 599 Score = 38.3 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 18/34 (52%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 D SA++ FQ L +G+ D +T AMN P Sbjct: 95 DLQFVSALRDFQRLSDLPVTGVFDDATKAAMNKP 128 >gi|317487820|ref|ZP_07946413.1| ykud domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325830595|ref|ZP_08164016.1| ErfK/YbiS/YcfS/YnhG [Eggerthella sp. HGA1] gi|316913095|gb|EFV34611.1| ykud domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325487341|gb|EGC89783.1| ErfK/YbiS/YcfS/YnhG [Eggerthella sp. HGA1] Length = 498 Score = 38.3 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Query: 188 EQKMGLRYVLVNIPAASLEAVE-NGKVGLRSTVIVGRVD--RQTP 229 + G RY+ V++ + +G V S +I G+ D TP Sbjct: 364 SRDWGARYMDVDLSEQHARLYDASGAVIWESDIITGKPDGEHDTP 408 >gi|260757107|ref|ZP_05869455.1| LOW QUALITY PROTEIN: lytic Murein transglycosylase [Brucella abortus bv. 6 str. 870] gi|260677215|gb|EEX64036.1| LOW QUALITY PROTEIN: lytic Murein transglycosylase [Brucella abortus bv. 6 str. 870] Length = 300 Score = 38.3 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ L G D + + + +A++ FQ R+GL+P G L + Sbjct: 247 ELQTHLKALGYYDGNIDGKIGATSR--AAIEAFQQRNGLEPDGHPSKEVLSVL 297 >gi|220928280|ref|YP_002505189.1| peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Clostridium cellulolyticum H10] gi|219998608|gb|ACL75209.1| peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Clostridium cellulolyticum H10] Length = 231 Score = 38.3 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 9/20 (45%) Query: 142 VKLFQMRHGLDPSGMVDSST 161 VK FQ GL G+ T Sbjct: 151 VKEFQSMAGLTADGVAGPKT 170 >gi|293604157|ref|ZP_06686565.1| type III effector HopAJ2 [Achromobacter piechaudii ATCC 43553] gi|292817382|gb|EFF76455.1| type III effector HopAJ2 [Achromobacter piechaudii ATCC 43553] Length = 411 Score = 38.3 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 32/109 (29%), Gaps = 12/109 (11%) Query: 69 IISKETIAQTEKAIAFYQDILSRGG-----WPELPIRPLHLGNSSVSVQRLRERLIISGD 123 + S AIA D L G WP G S + L+ LI G Sbjct: 310 LYSYNAAESYALAIAHLSDRLRGAGPLIQPWPTDD-----PGLSRAERRELQSLLIAKGY 364 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 V A A+K Q GL G L+A+ R Sbjct: 365 EVGEPDGMVG--ARTRQALKAAQESLGLPADGRAGQKALQALRASSAPR 411 >gi|114652047|ref|XP_001157506.1| PREDICTED: matrix metalloproteinase 14 isoform 1 [Pan troglodytes] Length = 589 Score = 38.3 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 46 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 105 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 106 FGAEIKANVRRKR 118 >gi|332687298|ref|YP_004457071.1| hypothetical protein MPTP_1868 [Melissococcus plutonius ATCC 35311] gi|332371307|dbj|BAK22262.1| hypothetical protein MPTP_1868 [Melissococcus plutonius ATCC 35311] Length = 725 Score = 38.3 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 8/63 (12%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA-MNVP-------VDLRIRQL 176 S+ L + + + AV+ FQ GL P G + + ++A +++ ++R+ Q Sbjct: 100 SGSEALDGMYTKFTKEAVEKFQKMAGLSPDGYLSTMLMKALLDMSAFALLGDANIRLMQQ 159 Query: 177 QVN 179 ++N Sbjct: 160 ELN 162 >gi|315079336|gb|EFT51337.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL053PA2] Length = 343 Score = 38.3 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + + ++ L P+K + + + +AVK FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYF-PAKWVGLPYGPITTNAVKGFQRANALKQTGVTDAVTLGL 200 Query: 165 M 165 + Sbjct: 201 L 201 >gi|153005694|ref|YP_001380019.1| hypothetical protein Anae109_2835 [Anaeromyxobacter sp. Fw109-5] gi|152029267|gb|ABS27035.1| hypothetical protein Anae109_2835 [Anaeromyxobacter sp. Fw109-5] Length = 612 Score = 38.3 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ L +RLI L P++ ++ A++ +Q +H + G++D T A+ Sbjct: 172 SALAALEQRLICDRLLPPARRTPRW---RLQEALEAYQRKHAIVSWGVLDRETRRAL 225 >gi|261216711|ref|ZP_05930992.1| lytic Murein transglycosylase [Brucella ceti M13/05/1] gi|260921800|gb|EEX88368.1| lytic Murein transglycosylase [Brucella ceti M13/05/1] Length = 174 Score = 38.3 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ L G D + + + +A++ FQ R+GL+P G L + Sbjct: 121 ELQTHLKALGYYDGNIDGKIGATSR--AAIEAFQQRNGLEPDGHPSKEVLSVL 171 >gi|254715008|ref|ZP_05176819.1| Putative peptidoglycan binding domain 1 [Brucella ceti M13/05/1] Length = 184 Score = 38.3 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ L G D + + + +A++ FQ R+GL+P G L + Sbjct: 131 ELQTHLKALGYYDGNIDGKIGATSR--AAIEAFQQRNGLEPDGHPSKEVLSVL 181 >gi|62317029|ref|YP_222882.1| transglycosylase [Brucella abortus bv. 1 str. 9-941] gi|83269023|ref|YP_418314.1| peptidoglycan binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189022296|ref|YP_001932037.1| Putative peptidoglycan binding domain 1 [Brucella abortus S19] gi|254695217|ref|ZP_05157045.1| Putative peptidoglycan binding domain 1 [Brucella abortus bv. 3 str. Tulya] gi|254698316|ref|ZP_05160144.1| Putative peptidoglycan binding domain 1 [Brucella abortus bv. 2 str. 86/8/59] gi|254706370|ref|ZP_05168198.1| Putative peptidoglycan binding domain 1 [Brucella pinnipedialis M163/99/10] gi|254711340|ref|ZP_05173151.1| Putative peptidoglycan binding domain 1 [Brucella pinnipedialis B2/94] gi|254731759|ref|ZP_05190337.1| Putative peptidoglycan binding domain 1 [Brucella abortus bv. 4 str. 292] gi|256014866|ref|YP_003104875.1| membrane-bound lytic murein transglycosylase B [Brucella microti CCM 4915] gi|256030031|ref|ZP_05443645.1| Putative peptidoglycan binding domain 1 [Brucella pinnipedialis M292/94/1] gi|256158203|ref|ZP_05456112.1| Putative peptidoglycan binding domain 1 [Brucella ceti M490/95/1] gi|256252855|ref|ZP_05458391.1| Putative peptidoglycan binding domain 1 [Brucella ceti B1/94] gi|256256672|ref|ZP_05462208.1| Putative peptidoglycan binding domain 1 [Brucella abortus bv. 9 str. C68] gi|260166918|ref|ZP_05753729.1| membrane-bound lytic murein transglycosylase B [Brucella sp. F5/99] gi|260544265|ref|ZP_05820086.1| lytic murein transglycosylase [Brucella abortus NCTC 8038] gi|260759523|ref|ZP_05871871.1| lytic Murein transglycosylase [Brucella abortus bv. 4 str. 292] gi|260762767|ref|ZP_05875099.1| lytic Murein transglycosylase [Brucella abortus bv. 2 str. 86/8/59] gi|260882916|ref|ZP_05894530.1| lytic Murein transglycosylase [Brucella abortus bv. 9 str. C68] gi|261215579|ref|ZP_05929860.1| lytic Murein transglycosylase [Brucella abortus bv. 3 str. Tulya] gi|261219942|ref|ZP_05934223.1| lytic Murein transglycosylase [Brucella ceti B1/94] gi|261313816|ref|ZP_05953013.1| lytic Murein transglycosylase [Brucella pinnipedialis M163/99/10] gi|261318943|ref|ZP_05958140.1| lytic Murein transglycosylase [Brucella pinnipedialis B2/94] gi|261756303|ref|ZP_06000012.1| lytic Murein transglycosylase [Brucella sp. F5/99] gi|265987053|ref|ZP_06099610.1| lytic Murein transglycosylase [Brucella pinnipedialis M292/94/1] gi|265996715|ref|ZP_06109272.1| lytic Murein transglycosylase [Brucella ceti M490/95/1] gi|294853097|ref|ZP_06793769.1| transglycosylase [Brucella sp. NVSL 07-0026] gi|297250027|ref|ZP_06933728.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|62197222|gb|AAX75521.1| hypothetical transglycosylase [Brucella abortus bv. 1 str. 9-941] gi|82939297|emb|CAJ12235.1| Putative peptidoglycan binding domain 1 [Brucella melitensis biovar Abortus 2308] gi|189020870|gb|ACD73591.1| Putative peptidoglycan binding domain 1 [Brucella abortus S19] gi|255997526|gb|ACU49213.1| membrane-bound lytic murein transglycosylase B [Brucella microti CCM 4915] gi|260097536|gb|EEW81410.1| lytic murein transglycosylase [Brucella abortus NCTC 8038] gi|260669841|gb|EEX56781.1| lytic Murein transglycosylase [Brucella abortus bv. 4 str. 292] gi|260673188|gb|EEX60009.1| lytic Murein transglycosylase [Brucella abortus bv. 2 str. 86/8/59] gi|260872444|gb|EEX79513.1| lytic Murein transglycosylase [Brucella abortus bv. 9 str. C68] gi|260917186|gb|EEX84047.1| lytic Murein transglycosylase [Brucella abortus bv. 3 str. Tulya] gi|260918526|gb|EEX85179.1| lytic Murein transglycosylase [Brucella ceti B1/94] gi|261298166|gb|EEY01663.1| lytic Murein transglycosylase [Brucella pinnipedialis B2/94] gi|261302842|gb|EEY06339.1| lytic Murein transglycosylase [Brucella pinnipedialis M163/99/10] gi|261736287|gb|EEY24283.1| lytic Murein transglycosylase [Brucella sp. F5/99] gi|262551012|gb|EEZ07173.1| lytic Murein transglycosylase [Brucella ceti M490/95/1] gi|264659250|gb|EEZ29511.1| lytic Murein transglycosylase [Brucella pinnipedialis M292/94/1] gi|294818752|gb|EFG35752.1| transglycosylase [Brucella sp. NVSL 07-0026] gi|297173896|gb|EFH33260.1| peptidoglycan binding domain-containing protein [Brucella abortus bv. 5 str. B3196] Length = 412 Score = 38.3 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ L G D + + + +A++ FQ R+GL+P G L + Sbjct: 359 ELQTHLKALGYYDGNIDGKIGATSR--AAIEAFQQRNGLEPDGHPSKEVLSVL 409 >gi|321443282|gb|EFX60041.1| hypothetical protein DAPPUDRAFT_125714 [Daphnia pulex] Length = 342 Score = 38.3 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 27/164 (16%) Query: 61 MGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSS--VSVQRLRERL 118 +D+ + ++ A A Y+ +L + + LG + L + L Sbjct: 24 AAVDALQLFEKSLAYSDSDDAWARYRQLL-------VVVAEAQLGAKDVPAADVSLSQVL 76 Query: 119 IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 + D PS+ + A +A++ Q R + LE ++ P R+ Sbjct: 77 AVDPDYAPSEPDASAVLVARVAALRQAQKR--------ARPAVLEVLSRPPGARVLVDGR 128 Query: 179 NLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG 222 R ++ G+ YVLV+ + G+ V+VG Sbjct: 129 AAGRAPVAVDVSPGIHYVLVD---------DEGR-TYSERVVVG 162 >gi|254711939|ref|ZP_05173750.1| Putative peptidoglycan binding domain 1 [Brucella ceti M644/93/1] gi|261319579|ref|ZP_05958776.1| lytic Murein transglycosylase [Brucella ceti M644/93/1] gi|261292269|gb|EEX95765.1| lytic Murein transglycosylase [Brucella ceti M644/93/1] Length = 412 Score = 38.3 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ L G D + + + +A++ FQ R+GL+P G L + Sbjct: 359 ELQTHLKALGYYDGNIDGKIGATSR--AAIEAFQQRNGLEPDGHPSKEVLSVL 409 >gi|254699386|ref|ZP_05161214.1| Putative peptidoglycan binding domain 1 [Brucella suis bv. 5 str. 513] gi|261749835|ref|ZP_05993544.1| lytic Murein transglycosylase [Brucella suis bv. 5 str. 513] gi|261739588|gb|EEY27514.1| lytic Murein transglycosylase [Brucella suis bv. 5 str. 513] Length = 412 Score = 38.3 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ L G D + + + +A++ FQ R+GL+P G L + Sbjct: 359 ELQTHLKALGYYDGNIDGKIGATSR--AAIEAFQQRNGLEPDGHPSKEVLSVL 409 >gi|160916038|ref|ZP_02078246.1| hypothetical protein EUBDOL_02066 [Eubacterium dolichum DSM 3991] gi|158432514|gb|EDP10803.1| hypothetical protein EUBDOL_02066 [Eubacterium dolichum DSM 3991] Length = 169 Score = 38.3 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 14/86 (16%) Query: 101 PLHLGNSSVSVQRLRERLIIS---GDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 PL +G++ + V +++ L + G + F A +AV+ FQ L +G + Sbjct: 7 PLTIGSTGIGVNKMQAYLNMFQERGLITTKVNQDGDFGAITANAVREFQAYSRLPINGKI 66 Query: 158 DSSTLEAM-----------NVPVDLR 172 D +T A+ N+PV R Sbjct: 67 DDATWSAIVNKLRELRIITNIPVASR 92 >gi|148558066|ref|YP_001257145.1| putative transglycosylase [Brucella ovis ATCC 25840] gi|148369351|gb|ABQ62223.1| putative transglycosylase [Brucella ovis ATCC 25840] Length = 412 Score = 38.3 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ L G D + + + +A++ FQ R+GL+P G L + Sbjct: 359 ELQTHLKALGYYDGNIDGKIGATSR--AAIEAFQQRNGLEPDGHPSKEVLSVL 409 >gi|27375195|ref|NP_766724.1| hypothetical protein blr0084 [Bradyrhizobium japonicum USDA 110] gi|27348331|dbj|BAC45349.1| blr0084 [Bradyrhizobium japonicum USDA 110] Length = 462 Score = 38.3 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 + + +V +++ L G P ++ ++AV FQ ++GL +G++D +T+ A Sbjct: 206 DIASTVVLMQQALNKLGANPPLAEDGIS-GPKTKAAVSQFQQQNGLRDTGLLDGATVAA 263 >gi|306845309|ref|ZP_07477884.1| lytic murein transglycosylase [Brucella sp. BO1] gi|306274225|gb|EFM56037.1| lytic murein transglycosylase [Brucella sp. BO1] Length = 412 Score = 38.3 bits (88), Expect = 2.6, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ L G D + + + +A++ FQ R+GL+P G L + Sbjct: 359 ELQTHLKALGYYDGNIDGKIGATSR--AAIEAFQQRNGLEPDGHPSKEVLSVL 409 >gi|332254133|ref|XP_003276184.1| PREDICTED: matrix metalloproteinase-17 [Nomascus leucogenys] Length = 607 Score = 38.3 bits (88), Expect = 2.6, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 56 LSRFGYLPPADPTTGQLQTQEELSKAITAMQQFGGLEATGILDEATLALMKTPRCSLPDL 115 Query: 176 LQVNLMRIKKLLEQK 190 + R ++ Sbjct: 116 PVLTQARRRRQAPAP 130 >gi|114652045|ref|XP_001157623.1| PREDICTED: matrix metalloproteinase 14 isoform 3 [Pan troglodytes] Length = 600 Score = 38.3 bits (88), Expect = 2.6, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|314924447|gb|EFS88278.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL001PA1] Length = 343 Score = 38.3 bits (88), Expect = 2.6, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + + ++ L P+K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYF-PAKWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTLGL 200 Query: 165 M 165 + Sbjct: 201 L 201 >gi|256395739|ref|YP_003117303.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361965|gb|ACU75462.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 239 Score = 38.3 bits (88), Expect = 2.6, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 2/64 (3%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSST 161 L + V L+ L +G G+ F E AV Q LD G V T Sbjct: 176 LQVDMWGAEVAELQCLLQRAGFSPG--GIDGNFGPLTELAVIKAQKADQLDVDGQVGPKT 233 Query: 162 LEAM 165 A+ Sbjct: 234 WAAL 237 >gi|331082468|ref|ZP_08331594.1| hypothetical protein HMPREF0992_00518 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400954|gb|EGG80555.1| hypothetical protein HMPREF0992_00518 [Lachnospiraceae bacterium 6_1_63FAA] Length = 478 Score = 38.3 bits (88), Expect = 2.6, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR---VDRQTP 229 R K E +G YV +++ A L ++G V + S + G R+TP Sbjct: 337 RGKAYGENDIGNTYVELDLSAQHLWYYKDGAVLMESDFVSGTYNDKSRRTP 387 >gi|297519881|ref|ZP_06938267.1| ErfK/YbiS/YcfS/YnhG family protein [Escherichia coli OP50] Length = 196 Score = 38.3 bits (88), Expect = 2.6, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 4/71 (5%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEAVENGK-VGLRSTVIVGRV--DRQTPILHSRINRIM 239 ++ LL +++NI L GK + +G++ D TP + + ++ Sbjct: 91 LQTLLP-DAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKR 149 Query: 240 FNPYWVIPRSI 250 NP W +I Sbjct: 150 ANPTWTPTANI 160 >gi|260587962|ref|ZP_05853875.1| conserved hypothetical protein [Blautia hansenii DSM 20583] gi|260541489|gb|EEX22058.1| conserved hypothetical protein [Blautia hansenii DSM 20583] Length = 486 Score = 38.3 bits (88), Expect = 2.6, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 182 RIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGR---VDRQTP 229 R K E +G YV +++ A L ++G V + S + G R+TP Sbjct: 345 RGKAYGENDIGNTYVELDLSAQHLWYYKDGAVLMESDFVSGTYNDKSRRTP 395 >gi|17986480|ref|NP_539114.1| protein ERFK/SRFK [Brucella melitensis bv. 1 str. 16M] gi|17982080|gb|AAL51378.1| protein erfk/srfk [Brucella melitensis bv. 1 str. 16M] Length = 286 Score = 38.3 bits (88), Expect = 2.6, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 45/151 (29%), Gaps = 45/151 (29%) Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 ENGK+ + +G D + P I+Q + + +P Y + Sbjct: 168 ENGKLVVAYPSTIGSSDNPS------------------PSGIVQVE---RIAINPNYTYN 206 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR-NNTYMHDTP 327 I+ +V PG + + I H TP Sbjct: 207 PKINFKQGNNDKVLTI----------------PPGPNGPVGTVWIALSKPTYGI--HGTP 248 Query: 328 EPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 P + + + GCVR+ N +L + Sbjct: 249 APS---RIGKISSHGCVRLTNWDAEELAKLV 276 >gi|332711897|ref|ZP_08431827.1| hypothetical protein LYNGBM3L_69260 [Lyngbya majuscula 3L] gi|332349225|gb|EGJ28835.1| hypothetical protein LYNGBM3L_69260 [Lyngbya majuscula 3L] Length = 209 Score = 38.3 bits (88), Expect = 2.7, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 28/120 (23%) Query: 266 LKDNNIHMIDE----KGKEVFVEEVDWNSPEPPNFIFRQ----------------DPGKI 305 L + +++ + + + W +P NF Q PG Sbjct: 89 LSERRVYVYQAAQVLNSYPIAIGKAGWETPT-GNFEVIQKLQDPAWEHPWTGEVIPPGPN 147 Query: 306 NAMAS--TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDLDVWLLKDTP 361 N + +N H T L + GC+R+ +++ DL + TP Sbjct: 148 NPLGDRWIGFWTNGKNYIGFHGTTAEELVGQ---AVSHGCIRMLNKDVRDLFEKVAIGTP 204 >gi|254518309|ref|ZP_05130365.1| ErfK family protein [Clostridium sp. 7_2_43FAA] gi|226912058|gb|EEH97259.1| ErfK family protein [Clostridium sp. 7_2_43FAA] Length = 464 Score = 38.3 bits (88), Expect = 2.7, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 20/39 (51%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDR 226 E +G YV +N+ + L ++GK+ + V+ G + Sbjct: 337 EDDIGDTYVEINLTSQHLWFYKDGKLIAQGDVVTGDPGK 375 >gi|297272408|ref|XP_002800423.1| PREDICTED: matrix metalloproteinase-28 isoform 2 [Macaca mulatta] Length = 510 Score = 38.3 bits (88), Expect = 2.7, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 16/82 (19%) Query: 94 WPELPIRPLHLGNSSVSVQRLRER----LIISGDLD---PSKGLSVAFDAYVESAVKLFQ 146 W L +P G Q LR+ L G L+ P S F A++ FQ Sbjct: 17 WDRLDAQPAERGG-----QELRKEAEAFLEKYGYLNEQVPKAPTSTRFS----DAIRAFQ 67 Query: 147 MRHGLDPSGMVDSSTLEAMNVP 168 L SG++D +TL M P Sbjct: 68 WVSQLPVSGVLDRATLRQMTRP 89 >gi|42782311|ref|NP_979558.1| hypothetical protein BCE_3256 [Bacillus cereus ATCC 10987] gi|42738236|gb|AAS42166.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 481 Score = 38.3 bits (88), Expect = 2.7, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 16/32 (50%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + + GK+ L + V+ G+ Sbjct: 354 GDTYAEVSIADQQIWIYKEGKLVLTTNVVTGK 385 >gi|282854958|ref|ZP_06264292.1| lipoprotein A-like protein [Propionibacterium acnes J139] gi|282582104|gb|EFB87487.1| lipoprotein A-like protein [Propionibacterium acnes J139] gi|314967174|gb|EFT11273.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL082PA2] gi|314981567|gb|EFT25661.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL110PA3] gi|315092330|gb|EFT64306.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL110PA4] gi|327328748|gb|EGE70508.1| lipoprotein A family protein [Propionibacterium acnes HL103PA1] Length = 343 Score = 38.3 bits (88), Expect = 2.7, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + + ++ L P+K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYF-PAKWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTLGL 200 Query: 165 M 165 + Sbjct: 201 L 201 >gi|229368716|gb|ACQ62999.1| matrix metalloproteinase 24 preproprotein (predicted), 5 prime [Dasypus novemcinctus] Length = 245 Score = 38.3 bits (88), Expect = 2.7, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 3 LKSYGYLLPYDSRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 55 >gi|11935132|gb|AAG41981.1| matrix metalloproteinase 28 [Homo sapiens] Length = 520 Score = 38.3 bits (88), Expect = 2.7, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 16/82 (19%) Query: 94 WPELPIRPLHLGNSSVSVQRLRER----LIISGDLD---PSKGLSVAFDAYVESAVKLFQ 146 W L +P G Q LR+ L G L+ P S F A++ FQ Sbjct: 17 WGHLDAQPAERGG-----QELRKEAEAFLEKYGYLNEQVPKAPTSTRF----SDAIRAFQ 67 Query: 147 MRHGLDPSGMVDSSTLEAMNVP 168 L SG++D +TL M P Sbjct: 68 WVSQLPVSGVLDRATLRQMTRP 89 >gi|12803593|gb|AAH02631.1| MMP28 protein [Homo sapiens] gi|60655721|gb|AAX32424.1| matrix metalloproteinase 28 [synthetic construct] gi|119600535|gb|EAW80129.1| matrix metallopeptidase 28, isoform CRA_b [Homo sapiens] gi|325464269|gb|ADZ15905.1| matrix metallopeptidase 28 [synthetic construct] Length = 393 Score = 38.3 bits (88), Expect = 2.7, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 16/82 (19%) Query: 94 WPELPIRPLHLGNSSVSVQRLRER----LIISGDLD---PSKGLSVAFDAYVESAVKLFQ 146 W L +P G Q LR+ L G L+ P S F A++ FQ Sbjct: 17 WGHLDAQPAERGG-----QELRKEAEAFLEKYGYLNEQVPKAPTSTRF----SDAIRAFQ 67 Query: 147 MRHGLDPSGMVDSSTLEAMNVP 168 L SG++D +TL M P Sbjct: 68 WVSQLPVSGVLDRATLRQMTRP 89 >gi|297272410|ref|XP_001114445.2| PREDICTED: matrix metalloproteinase-28 isoform 1 [Macaca mulatta] Length = 520 Score = 38.3 bits (88), Expect = 2.7, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 16/82 (19%) Query: 94 WPELPIRPLHLGNSSVSVQRLRER----LIISGDLD---PSKGLSVAFDAYVESAVKLFQ 146 W L +P G Q LR+ L G L+ P S F A++ FQ Sbjct: 17 WDRLDAQPAERGG-----QELRKEAEAFLEKYGYLNEQVPKAPTSTRFS----DAIRAFQ 67 Query: 147 MRHGLDPSGMVDSSTLEAMNVP 168 L SG++D +TL M P Sbjct: 68 WVSQLPVSGVLDRATLRQMTRP 89 >gi|224367795|ref|YP_002601958.1| putative general secretion pathway protein A [Desulfobacterium autotrophicum HRM2] gi|223690511|gb|ACN13794.1| putative general secretion pathway protein A [Desulfobacterium autotrophicum HRM2] Length = 581 Score = 38.3 bits (88), Expect = 2.7, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 2/55 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 + L+ L G L+ +D V+ A+ Q +G+ G+ T Sbjct: 508 GSQIINLKLLLKAIGF--QGINLTADYDDRVKQAIIEIQSENGITVDGLAGPMTR 560 >gi|254423629|ref|ZP_05037347.1| ErfK/YbiS/YcfS/YnhG superfamily [Synechococcus sp. PCC 7335] gi|196191118|gb|EDX86082.1| ErfK/YbiS/YcfS/YnhG superfamily [Synechococcus sp. PCC 7335] Length = 108 Score = 38.3 bits (88), Expect = 2.7, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 7/56 (12%) Query: 301 DPGKINAMAS--TKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 PG N + N+ H TP +V + GCVR+ ++ L Sbjct: 42 PPGPYNPLGDRWIAFWTDGTNSIGFHGTPNR---ESVGTAASHGCVRMYNEDVRQL 94 >gi|92113032|ref|YP_572960.1| lytic murein transglycosylase [Chromohalobacter salexigens DSM 3043] gi|91796122|gb|ABE58261.1| Lytic murein transglycosylase [Chromohalobacter salexigens DSM 3043] Length = 430 Score = 38.3 bits (88), Expect = 2.7, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 6/75 (8%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 +G WP + PL S ++ ++ RL G + ++ +Q G Sbjct: 356 QGSWPR-EVEPL----SRTQIKEMQRRLNALGFSTGGSPDGIV-GPNTRKGLRAYQRSQG 409 Query: 151 LDPSGMVDSSTLEAM 165 P G + LEA+ Sbjct: 410 AIPDGFPTPALLEAL 424 >gi|315094697|gb|EFT66673.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL060PA1] Length = 343 Score = 38.3 bits (88), Expect = 2.7, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + + ++ L P+K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYF-PAKWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTLGL 200 Query: 165 M 165 + Sbjct: 201 L 201 >gi|260828369|ref|XP_002609136.1| hypothetical protein BRAFLDRAFT_126164 [Branchiostoma floridae] gi|229294490|gb|EEN65146.1| hypothetical protein BRAFLDRAFT_126164 [Branchiostoma floridae] Length = 778 Score = 38.3 bits (88), Expect = 2.7, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 19/34 (55%) Query: 135 DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 D + A++ FQ + L +G++D +T MN P Sbjct: 243 DEEFKEAIRKFQQANNLTITGLLDDATRNKMNEP 276 >gi|78049042|ref|YP_365217.1| putative secreted protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037472|emb|CAJ25217.1| putative secreted protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 335 Score = 38.3 bits (88), Expect = 2.7, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 6/51 (11%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 G N + I+ + Y +H TPEP +V + E+ GCVR+ N Sbjct: 272 PAGPNNPVGRVWIDLSKPH--YGLHGTPEPG---HVGKTESHGCVRLTNWD 317 >gi|91782629|ref|YP_557835.1| putative phage-related protein (hydrolase) [Burkholderia xenovorans LB400] gi|91686583|gb|ABE29783.1| Putative phage-related protein (hydrolase) [Burkholderia xenovorans LB400] Length = 267 Score = 38.3 bits (88), Expect = 2.8, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 NS SV L+ L +P + +SA++ FQ R GL +GMV T + Sbjct: 6 NSGTSVVFLQRTLAQE---NPRLKVDGLSGPDTQSALRRFQQRRGLPDTGMVCEQTRALL 62 >gi|303241052|ref|ZP_07327562.1| Peptidoglycan-binding domain 1 protein [Acetivibrio cellulolyticus CD2] gi|302591477|gb|EFL61215.1| Peptidoglycan-binding domain 1 protein [Acetivibrio cellulolyticus CD2] Length = 143 Score = 38.3 bits (88), Expect = 2.8, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 7/75 (9%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 GG+P + G+ V V L++ L G + + F + V FQ +G Sbjct: 60 NGGYPVVAF-----GSVGVYVLILQDALRAIGF--TTTDIDGYFGPITQRTVINFQNSYG 112 Query: 151 LDPSGMVDSSTLEAM 165 L G+V T E + Sbjct: 113 LVADGIVGCLTWETL 127 >gi|193783707|dbj|BAG53618.1| unnamed protein product [Homo sapiens] Length = 510 Score = 38.3 bits (88), Expect = 2.8, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 16/82 (19%) Query: 94 WPELPIRPLHLGNSSVSVQRLRER----LIISGDLD---PSKGLSVAFDAYVESAVKLFQ 146 W L +P G Q LR+ L G L+ P S F A++ FQ Sbjct: 17 WGHLDAQPAERGG-----QELRKEAEAFLEKYGYLNEQVPKAPTSTRFS----DAIRAFQ 67 Query: 147 MRHGLDPSGMVDSSTLEAMNVP 168 L SG++D +TL M P Sbjct: 68 WVSQLPVSGVLDRATLRQMTRP 89 >gi|170756349|ref|YP_001780527.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum B1 str. Okra] gi|169121561|gb|ACA45397.1| ErfK/YbiS/YcfS/YnhG family protein [Clostridium botulinum B1 str. Okra] Length = 125 Score = 38.3 bits (88), Expect = 2.8, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 20/48 (41%) Query: 195 YVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 ++++N +L ++ V V VG+ TP +I NP Sbjct: 17 HIIINTQTHTLTLFKDNNVYKTYKVAVGKPSTPTPKGTFKIINRAINP 64 >gi|254476194|ref|ZP_05089580.1| Putative peptidoglycan binding domain protein [Ruegeria sp. R11] gi|214030437|gb|EEB71272.1| Putative peptidoglycan binding domain protein [Ruegeria sp. R11] Length = 424 Score = 38.3 bits (88), Expect = 2.8, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPV 169 + ++ +L G L+ S DA A+ FQ L PSG VD ++ + Sbjct: 280 DIAEVQTQLAALGYLNAPA--SGTLDAATRRAISRFQADQNLVPSGEVDFDLIDRLGEKT 337 Query: 170 DLRIR 174 R Sbjct: 338 ATRQE 342 >gi|325916883|ref|ZP_08179131.1| hypothetical protein XVE_3111 [Xanthomonas vesicatoria ATCC 35937] gi|325536928|gb|EGD08676.1| hypothetical protein XVE_3111 [Xanthomonas vesicatoria ATCC 35937] Length = 271 Score = 37.9 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 6/51 (11%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 G N + I+ + Y +H TPEP +V + E+ GCVR+ N Sbjct: 208 PSGPNNPVGRVWIDLSKPH--YGLHGTPEPG---HVGKTESHGCVRLTNWD 253 >gi|321471531|gb|EFX82503.1| hypothetical protein DAPPUDRAFT_316218 [Daphnia pulex] Length = 550 Score = 37.9 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 9/65 (13%) Query: 118 LIISGDLDPSKGLSVAFDAYVES-----AVKLFQMRHGLDPSGMVDSSTLEAMNVP---V 169 L G L+ S ++ V + A++ FQ GL+ +G +D TLE M+ P V Sbjct: 83 LERFGYLERGPQDS-SYSESVSAESFRSAIEDFQSFAGLNKTGEIDKETLELMSKPRCGV 141 Query: 170 DLRIR 174 R+R Sbjct: 142 ADRVR 146 >gi|17231318|ref|NP_487866.1| hypothetical protein all3826 [Nostoc sp. PCC 7120] gi|17132960|dbj|BAB75525.1| all3826 [Nostoc sp. PCC 7120] Length = 241 Score = 37.9 bits (87), Expect = 2.8, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 62/169 (36%), Gaps = 13/169 (7%) Query: 11 LYCFFVYLILPMGLSLVEKPIHASVLDEIINESYHSIVNDRFDNFLARVDMGIDSDIPII 70 ++C F + + V + + + + F L + + + Sbjct: 1 MWCGFGKSSAVIATACVISASFV-ISNTTFADRQRNYTPQEFRTVLRGLGYNVKVTNTPL 59 Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELP----IRPLHLGNSSVSVQRLRERLIISGDLDP 126 S A+T+KAI+ +Q G+ P P ++ VQ L+ L +P Sbjct: 60 SD---AETKKAISEFQK-----GYKLTPVDGIAGPKTQDFAANIVQILQANLNAVLKTNP 111 Query: 127 SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 + E+A+K FQ +H L+ +G+ + + + ++ I + Sbjct: 112 PLPRDQFYGPKTEAAIKEFQKKHQLEATGIANLALRQKLDEEAKKVISK 160 >gi|262194790|ref|YP_003265999.1| hypothetical protein Hoch_1554 [Haliangium ochraceum DSM 14365] gi|262078137|gb|ACY14106.1| hypothetical protein Hoch_1554 [Haliangium ochraceum DSM 14365] Length = 279 Score = 37.9 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%) Query: 142 VKLFQMRHG-LDPSGMVDSSTLEA 164 V FQ HG L G++ T A Sbjct: 30 VAHFQREHGRLTVDGILGPKTWAA 53 >gi|162456479|ref|YP_001618846.1| putative Rhs element Vgr protein [Sorangium cellulosum 'So ce 56'] gi|161167061|emb|CAN98366.1| Putative Rhs element Vgr protein [Sorangium cellulosum 'So ce 56'] Length = 880 Score = 37.9 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 12/89 (13%) Query: 87 DILSRGGWP-ELPIRPLHLGNSSVSVQRL---------RERLIISGDLDPSKGLSVAFDA 136 ++ WP + P P +V V L RL G + + D Sbjct: 788 QLVEITMWPGKYPTGPRKK--WTVRVAALPEATTVEGALRRLKNLGYYEGAIKEDPPADK 845 Query: 137 YVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +A+ FQ H L SG +D+ T + Sbjct: 846 GFRAALAWFQKDHELGESGELDAQTAGEL 874 >gi|50843612|ref|YP_056839.1| rare lipoprotein A (RlpA) family protein [Propionibacterium acnes KPA171202] gi|289426002|ref|ZP_06427749.1| lipoprotein A-like protein [Propionibacterium acnes SK187] gi|289427943|ref|ZP_06429647.1| lipoprotein A-like protein [Propionibacterium acnes J165] gi|295131694|ref|YP_003582357.1| lipoprotein A-like protein [Propionibacterium acnes SK137] gi|50841214|gb|AAT83881.1| rare lipoprotein A (RlpA) family protein [Propionibacterium acnes KPA171202] gi|289153545|gb|EFD02259.1| lipoprotein A-like protein [Propionibacterium acnes SK187] gi|289158826|gb|EFD07026.1| lipoprotein A-like protein [Propionibacterium acnes J165] gi|291377050|gb|ADE00905.1| lipoprotein A-like protein [Propionibacterium acnes SK137] gi|313765634|gb|EFS36998.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL013PA1] gi|313808349|gb|EFS46816.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL087PA2] gi|313810700|gb|EFS48414.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL083PA1] gi|313816578|gb|EFS54292.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL059PA1] gi|313821110|gb|EFS58824.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL036PA1] gi|313824034|gb|EFS61748.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL036PA2] gi|313827221|gb|EFS64935.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL063PA1] gi|313829657|gb|EFS67371.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL063PA2] gi|313831478|gb|EFS69192.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL007PA1] gi|313833473|gb|EFS71187.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL056PA1] gi|314916618|gb|EFS80449.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL005PA4] gi|314918921|gb|EFS82752.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL050PA1] gi|314920932|gb|EFS84763.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL050PA3] gi|314926923|gb|EFS90754.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL036PA3] gi|314931427|gb|EFS95258.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL067PA1] gi|314956652|gb|EFT00904.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL027PA1] gi|314959530|gb|EFT03632.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL002PA1] gi|314968868|gb|EFT12966.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL037PA1] gi|314974828|gb|EFT18923.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL053PA1] gi|314977845|gb|EFT21939.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL045PA1] gi|314979555|gb|EFT23649.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL072PA2] gi|314984745|gb|EFT28837.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL005PA1] gi|314988398|gb|EFT32489.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL005PA2] gi|314990295|gb|EFT34386.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL005PA3] gi|315083839|gb|EFT55815.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL027PA2] gi|315087248|gb|EFT59224.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL002PA3] gi|315089665|gb|EFT61641.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL072PA1] gi|315095615|gb|EFT67591.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL038PA1] gi|315100299|gb|EFT72275.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL059PA2] gi|315102419|gb|EFT74395.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL046PA1] gi|315107740|gb|EFT79716.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL030PA1] gi|327326672|gb|EGE68460.1| lipoprotein A family protein [Propionibacterium acnes HL096PA3] gi|327332934|gb|EGE74666.1| lipoprotein A family protein [Propionibacterium acnes HL096PA2] gi|327448639|gb|EGE95293.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL043PA1] gi|327449510|gb|EGE96164.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL013PA2] gi|327451136|gb|EGE97790.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL043PA2] gi|327455754|gb|EGF02409.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL087PA3] gi|328757070|gb|EGF70686.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL025PA2] gi|328757265|gb|EGF70881.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL087PA1] gi|328757453|gb|EGF71069.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL020PA1] gi|328761985|gb|EGF75492.1| lipoprotein A family protein [Propionibacterium acnes HL099PA1] gi|332676558|gb|AEE73374.1| rare lipoprotein A (RlpA) family protein [Propionibacterium acnes 266] Length = 343 Score = 37.9 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + + ++ L P+K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYF-PAKWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTLGL 200 Query: 165 M 165 + Sbjct: 201 L 201 >gi|314961936|gb|EFT06037.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL002PA2] Length = 343 Score = 37.9 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + + ++ L P+K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYF-PAKWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTLGL 200 Query: 165 M 165 + Sbjct: 201 L 201 >gi|313813705|gb|EFS51419.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL025PA1] gi|327335339|gb|EGE77049.1| lipoprotein A family protein [Propionibacterium acnes HL097PA1] Length = 343 Score = 37.9 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + + ++ L P+K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYF-PAKWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTLGL 200 Query: 165 M 165 + Sbjct: 201 L 201 >gi|313793623|gb|EFS41654.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL110PA1] gi|313802934|gb|EFS44145.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL110PA2] gi|313839433|gb|EFS77147.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL086PA1] gi|314964726|gb|EFT08826.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL082PA1] gi|315082422|gb|EFT54398.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL078PA1] gi|327455956|gb|EGF02611.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL092PA1] Length = 343 Score = 37.9 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + + ++ L P+K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYF-PAKWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTLGL 200 Query: 165 M 165 + Sbjct: 201 L 201 >gi|27382805|ref|NP_774334.1| hypothetical protein blr7694 [Bradyrhizobium japonicum USDA 110] gi|27355978|dbj|BAC52959.1| blr7694 [Bradyrhizobium japonicum USDA 110] Length = 400 Score = 37.9 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 19/43 (44%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 G ++++I + +NG + RS+V G TP+ Sbjct: 71 PLPKGPLQIIISIADQRVSLFDNGALIARSSVSTGMEGHPTPL 113 >gi|308233678|ref|ZP_07664415.1| Peptidoglycan-binding domain 1 protein [Atopobium vaginae DSM 15829] Length = 306 Score = 37.9 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 12/82 (14%) Query: 94 WPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W EL +G+ V++L+ L I G + + E+AVK Sbjct: 65 WSELVDASYTMGDRTLYLRLPNFHGNDVKQLQTCLNILGFSCGEADG--YYGVHTEAAVK 122 Query: 144 LFQMRHGLDPSGMVDSSTLEAM 165 FQ G GM T +A+ Sbjct: 123 EFQESQGSLGDGMAFQDTFDAI 144 Score = 37.1 bits (85), Expect = 5.6, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + P+ G++ +V+ ++ RL +D S+ F A AV F++ H L S V Sbjct: 1 MNPIREGSTGAAVEDIQSRLTRLDYAIDSSEIKQQHFGASTARAVGKFRLDHNLSLSSDV 60 Query: 158 DSSTLEAM 165 D + Sbjct: 61 DKQMWSEL 68 >gi|328943610|ref|ZP_08241075.1| penicillin-resistant DD-carboxypeptidase [Atopobium vaginae DSM 15829] gi|327491579|gb|EGF23353.1| penicillin-resistant DD-carboxypeptidase [Atopobium vaginae DSM 15829] Length = 312 Score = 37.9 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 12/82 (14%) Query: 94 WPELPIRPLHLGNS----------SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVK 143 W EL +G+ V++L+ L I G + + E+AVK Sbjct: 71 WSELVDASYTMGDRTLYLRLPNFHGNDVKQLQTCLNILGFSCGEADG--YYGVHTEAAVK 128 Query: 144 LFQMRHGLDPSGMVDSSTLEAM 165 FQ G GM T +A+ Sbjct: 129 EFQESQGSLGDGMAFQDTFDAI 150 Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAVKLFQMRH 149 +GG+ + P+ G++ +V+ ++ RL +D S+ F A AV F++ H Sbjct: 3 QGGF----MNPIREGSTGAAVEDIQSRLTRLDYAIDSSEIKQQHFGASTARAVGKFRLDH 58 Query: 150 GLDPSGMVDSSTLEAM 165 L S VD + Sbjct: 59 NLSLSSDVDKQMWSEL 74 >gi|304392266|ref|ZP_07374208.1| N-acetylmuramoyl-L-alanine amidase AmiD [Ahrensia sp. R2A130] gi|303296495|gb|EFL90853.1| N-acetylmuramoyl-L-alanine amidase AmiD [Ahrensia sp. R2A130] Length = 260 Score = 37.9 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 4/63 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD-PSGMVDSS 160 L G++ VQ L+ L + G FD V+ FQ G+ D + Sbjct: 183 LQEGDAGDPVQALQGMLELYGY---GLECGGNFDRKTRDVVEAFQRHFRPKRVDGVADIA 239 Query: 161 TLE 163 T+ Sbjct: 240 TIA 242 >gi|256376604|ref|YP_003100264.1| peptidoglycan-binding domain 1 protein [Actinosynnema mirum DSM 43827] gi|255920907|gb|ACU36418.1| Peptidoglycan-binding domain 1 protein [Actinosynnema mirum DSM 43827] Length = 396 Score = 37.9 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 11/83 (13%) Query: 91 RGGWPELPIRPL--------HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAV 142 RGG PE+ R L +G V+ L++ L+ + +F + Sbjct: 211 RGGTPEVDDRLLFSPACDAVVMGQHDSCVRELQQLLVR---ARARMSVDGSFGPETLRRL 267 Query: 143 KLFQMRHGLDPSGMVDSSTLEAM 165 FQ+ GL+P G+VD+ T EA+ Sbjct: 268 TAFQVLAGLEPRGVVDAGTREAL 290 >gi|315109341|gb|EFT81317.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL030PA2] Length = 328 Score = 37.9 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + + ++ L P+K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 127 GDHNARSKAVQRDLSTLNYF-PAKWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTLGL 185 Query: 165 M 165 + Sbjct: 186 L 186 >gi|313771652|gb|EFS37618.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL074PA1] gi|313818038|gb|EFS55752.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL046PA2] Length = 329 Score = 37.9 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + + ++ L P+K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 128 GDHNARSKAVQRDLSTLNYF-PAKWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTLGL 186 Query: 165 M 165 + Sbjct: 187 L 187 >gi|163852687|ref|YP_001640730.1| lytic murein transglycosylase [Methylobacterium extorquens PA1] gi|163664292|gb|ABY31659.1| lytic murein transglycosylase [Methylobacterium extorquens PA1] Length = 393 Score = 37.9 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 7/72 (9%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP R ++RL+ L G + + AV+ +Q+R GL Sbjct: 325 WPNGAARL-----DGPGLKRLQAGLAAKGLYAGEQDGRAG--PKLREAVRQYQIREGLPA 377 Query: 154 SGMVDSSTLEAM 165 G + LE + Sbjct: 378 DGYARPALLERL 389 >gi|13236530|ref|NP_077278.1| matrix metalloproteinase-28 isoform 1 preproprotein [Homo sapiens] gi|37538314|sp|Q9H239|MMP28_HUMAN RecName: Full=Matrix metalloproteinase-28; Short=MMP-28; AltName: Full=Epilysin; Flags: Precursor gi|12698338|gb|AAK01480.1|AF219624_1 matrix metalloproteinase-28 precursor [Homo sapiens] gi|12698852|gb|AAK01706.1|AF330002_1 matrix metalloprotease MMP25 [Homo sapiens] gi|37183092|gb|AAQ89346.1| metalloprotease [Homo sapiens] gi|119600534|gb|EAW80128.1| matrix metallopeptidase 28, isoform CRA_a [Homo sapiens] Length = 520 Score = 37.9 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 16/82 (19%) Query: 94 WPELPIRPLHLGNSSVSVQRLRER----LIISGDLD---PSKGLSVAFDAYVESAVKLFQ 146 W L +P G Q LR+ L G L+ P S F A++ FQ Sbjct: 17 WGHLDAQPAERGG-----QELRKEAEAFLEKYGYLNEQVPKAPTSTRFS----DAIRAFQ 67 Query: 147 MRHGLDPSGMVDSSTLEAMNVP 168 L SG++D +TL M P Sbjct: 68 WVSQLPVSGVLDRATLRQMTRP 89 >gi|326315522|ref|YP_004233194.1| peptidoglycan-binding domain 1 protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372358|gb|ADX44627.1| Peptidoglycan-binding domain 1 protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 574 Score = 37.9 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 12/24 (50%) Query: 144 LFQMRHGLDPSGMVDSSTLEAMNV 167 FQ+ GL P G+ TL +N Sbjct: 539 RFQVAQGLVPDGVAGPLTLMLLNR 562 >gi|160895502|ref|YP_001561084.1| peptidoglycan-binding domain-containing protein [Delftia acidovorans SPH-1] gi|160361086|gb|ABX32699.1| Peptidoglycan-binding domain 1 protein [Delftia acidovorans SPH-1] Length = 344 Score = 37.9 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 6/71 (8%) Query: 98 PIRPLHLGNSSVSVQRLR---ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + G ++ + LR ++L G + S+ ++A++ FQ L + Sbjct: 274 PSQTSAPGANAAGMS-LRAAQQKLNALGYTAGTPDGSMG--KNTQNALREFQRDQSLPQT 330 Query: 155 GMVDSSTLEAM 165 G +D +T +A+ Sbjct: 331 GRLDRATSQAL 341 >gi|119386794|ref|YP_917849.1| hypothetical protein Pden_4087 [Paracoccus denitrificans PD1222] gi|119377389|gb|ABL72153.1| protein of unknown function DUF847 [Paracoccus denitrificans PD1222] Length = 209 Score = 37.9 bits (87), Expect = 3.0, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 16/96 (16%) Query: 77 QTEKAI--AFYQDILSRGGWPELPIRPLHLGN-SSVSVQRL-RERL--IISGDLDPSKGL 130 T K I A Y+ W + PI L N + V + R+ + GD P+ Sbjct: 29 ATMKGITFATYRA------WKKRPITKAELRNITDAEVAAIYRQNYWDAVRGDDLPAGLD 82 Query: 131 SVAFDAYVESAVKL----FQMRHGLDPSGMVDSSTL 162 VAFDA V S V Q G+ GM+ T+ Sbjct: 83 LVAFDASVNSGVSRGAKWLQSALGVTADGMIGPQTI 118 >gi|254389922|ref|ZP_05005145.1| secreted protein [Streptomyces clavuligerus ATCC 27064] gi|326443017|ref|ZP_08217751.1| secreted protein [Streptomyces clavuligerus ATCC 27064] gi|197703632|gb|EDY49444.1| secreted protein [Streptomyces clavuligerus ATCC 27064] Length = 239 Score = 37.9 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%) Query: 141 AVKLFQMRHGL-DPSGMVDSSTLEAMNVPVDLRIR 174 AV+ FQ HG+ +G T + MNV + Sbjct: 73 AVRAFQKTHGISPAAGYAGPLTWQVMNVMTQQKAA 107 >gi|153954823|ref|YP_001395588.1| hypothetical protein CKL_2205 [Clostridium kluyveri DSM 555] gi|146347681|gb|EDK34217.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] Length = 126 Score = 37.9 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 20/47 (42%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +N A L +NGKV V VG+ TP RI NP Sbjct: 21 ITINRAARRLTLYKNGKVYKTYPVAVGKSGTPTPAGTFRIINKQINP 67 >gi|166363065|ref|YP_001655338.1| hypothetical protein MAE_03240 [Microcystis aeruginosa NIES-843] gi|166085438|dbj|BAG00146.1| hypothetical protein MAE_03240 [Microcystis aeruginosa NIES-843] Length = 516 Score = 37.9 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 16/97 (16%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM----RHGLDPSGMV--DS 159 N + +++RL G S A + A+KLFQ R L G + D+ Sbjct: 282 NRTADKIAVKQRLHSLGYTFVGDPNSAALNTGFILAIKLFQSIIAGRETLGGDGRIDVDN 341 Query: 160 STLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYV 196 +T + + N R + + + + + Sbjct: 342 TTQKWLE----------AANAPRWQTMPDSNPSISLI 368 >gi|163867469|ref|YP_001608668.1| peptidoglycan-binding protein [Bartonella tribocorum CIP 105476] gi|161017115|emb|CAK00673.1| peptidoglycan-binding protein [Bartonella tribocorum CIP 105476] Length = 418 Score = 37.9 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 11/74 (14%) Query: 86 QDILSRGG----WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA 141 + I G W P +PL + + L+ RL G + + + A Sbjct: 339 ERIAGHPGLVHDWQR-PFQPL----TFQECKELQSRLSALGYYKGNVDGKIGTASR--KA 391 Query: 142 VKLFQMRHGLDPSG 155 +K FQ+ HGL +G Sbjct: 392 IKAFQLHHGLKANG 405 >gi|45383954|ref|NP_990528.1| matrix metalloproteinase-16 [Gallus gallus] gi|1519365|gb|AAB07491.1| membrane type-matrix metalloproteinase [Gallus gallus] Length = 608 Score = 37.9 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 47 LQKYGYLPPTDPRMSVLRSAETMQSAIAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 106 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 107 TRGSSKFNIRRKR 119 >gi|327458105|gb|EGF04760.1| bacterial SH3 domain protein [Propionibacterium acnes HL083PA2] Length = 289 Score = 37.9 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + + ++ L P+K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYF-PAKWVGLPYGPITTNAVKVFQRANALKQTGVTDAVTLGL 200 Query: 165 M 165 + Sbjct: 201 L 201 >gi|325924016|ref|ZP_08185599.1| hypothetical protein XGA_4655 [Xanthomonas gardneri ATCC 19865] gi|325545510|gb|EGD16781.1| hypothetical protein XGA_4655 [Xanthomonas gardneri ATCC 19865] Length = 283 Score = 37.9 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 6/51 (11%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNII 350 G N + I+ + Y +H TPEP +V + E+ GCVR+ N Sbjct: 220 PSGPNNPVGRVWIDLSKPH--YGLHGTPEPG---HVGKTESHGCVRLTNWD 265 >gi|315104685|gb|EFT76661.1| lipoprotein A-like double-psi beta-barrel [Propionibacterium acnes HL050PA2] Length = 343 Score = 37.9 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G+ + + ++ L P+K + + + +AVK+FQ + L +G+ D+ TL Sbjct: 142 GDHNARSKAVQRDLSTLNYF-PAKWVGLPYGPITTNAVKVFQRANALKQTGVTDAITLGL 200 Query: 165 M 165 + Sbjct: 201 L 201 >gi|261323654|ref|ZP_05962851.1| lytic Murein transglycosylase [Brucella neotomae 5K33] gi|261299634|gb|EEY03131.1| lytic Murein transglycosylase [Brucella neotomae 5K33] Length = 399 Score = 37.9 bits (87), Expect = 3.1, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ L G D + + + +A++ FQ R+GL+P G L + Sbjct: 346 ELQTHLKALGYYDGNIDGKIGATSR--AAIEAFQQRNGLEPDGHPSKEVLSIL 396 >gi|238921306|ref|YP_002934821.1| hypothetical protein NT01EI_3450 [Edwardsiella ictaluri 93-146] gi|238870875|gb|ACR70586.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 150 Score = 37.9 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 12/91 (13%) Query: 301 DPGKINAMASTKIEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDT 360 G N M + H T F +R + GCVR+R+ WL K+ Sbjct: 17 PAGPDNPMGLYALYVGRLYAV--HGTNAN--FGIGLR-VSHGCVRLRDPD--IKWLFKNV 69 Query: 361 PTWSRYHI-----EEVVKTRKTTPVKLATEV 386 P +R + V+ + +++ + Sbjct: 70 PIGTRVQFIDEPVKATVEPDGSRYIEVHNPL 100 >gi|219855282|ref|YP_002472404.1| hypothetical protein CKR_1939 [Clostridium kluyveri NBRC 12016] gi|219569006|dbj|BAH06990.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 130 Score = 37.9 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 20/47 (42%) Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNP 242 + +N A L +NGKV V VG+ TP RI NP Sbjct: 25 ITINRAARRLTLYKNGKVYKTYPVAVGKSGTPTPAGTFRIINKQINP 71 >gi|118590236|ref|ZP_01547639.1| hypothetical protein SIAM614_11998 [Stappia aggregata IAM 12614] gi|118437208|gb|EAV43846.1| hypothetical protein SIAM614_11998 [Stappia aggregata IAM 12614] Length = 276 Score = 37.9 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 10/74 (13%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSK------GLSVAFDAYVESAVKLFQMR-HGLDP- 153 L G+S V ++ LI G P + VK FQ HG P Sbjct: 24 LGSGSSGHGVHLVQFGLIELGFPMPKSVGGTGLSPDGIYGNETVQKVKEFQRSSHGGPPI 83 Query: 154 --SGMVDSSTLEAM 165 G V +T+ + Sbjct: 84 NDDGAVGRNTMAKL 97 >gi|298292132|ref|YP_003694071.1| lytic murein transglycosylase [Starkeya novella DSM 506] gi|296928643|gb|ADH89452.1| lytic murein transglycosylase [Starkeya novella DSM 506] Length = 415 Score = 37.9 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +Q ++ RL +G LD + + AV FQ R G++P G L A+ Sbjct: 358 EIQEVQRRLTRAG-LDTGGTDGRVGNMTM-RAVANFQRRMGVEPDGYAGLDVLAAL 411 >gi|294011303|ref|YP_003544763.1| hypothetical protein SJA_C1-13170 [Sphingobium japonicum UT26S] gi|292674633|dbj|BAI96151.1| conserved hypothetical protein [Sphingobium japonicum UT26S] Length = 362 Score = 37.9 bits (87), Expect = 3.2, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 8/59 (13%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 PG + I+ + Y +H TPEP + R E+ GC+R+ N L + Sbjct: 299 KPGPNGPVGVVWIDLSKPH--YGIHGTPEP---QTIGRTESHGCIRLTNWDAARLAQMV 352 >gi|313897792|ref|ZP_07831333.1| peptidoglycan binding domain protein [Clostridium sp. HGF2] gi|312957327|gb|EFR38954.1| peptidoglycan binding domain protein [Clostridium sp. HGF2] Length = 169 Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 5/87 (5%) Query: 97 LPIRPLHLGNSSVSV---QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 + L G+ + V Q + G ++ + E AV+ +Q L Sbjct: 3 ISTAALKPGSIGIGVNKQQAYLNMMQEKGFINTRNLQDGVYGTRTEQAVREWQRYANLPI 62 Query: 154 SGMVDSSTLEAMNVPVDLRIRQLQVNL 180 G + + T +++ LR Q+ N+ Sbjct: 63 DGEIGNDTWDSIVN--KLRDLQIVTNI 87 Score = 36.4 bits (83), Expect = 8.8, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 18/37 (48%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + + V+ FQ + L+ G++ +T +A+ Sbjct: 126 PVDGMYGPRTTTMVQQFQYLYDLNIDGVIGKATWDAI 162 >gi|291222645|ref|XP_002731327.1| PREDICTED: GK21871-like [Saccoglossus kowalevskii] Length = 535 Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P++ D V A+K FQ L +G++D T M +P Sbjct: 27 LKKYGYLSPNRVK--FGDMEVTQAIKNFQRMTNLKVTGLMDERTKAGMQMP 75 >gi|240140021|ref|YP_002964498.1| putative membrane bound lytic murein transglycosylase B, mltB [Methylobacterium extorquens AM1] gi|240009995|gb|ACS41221.1| putative membrane bound lytic murein transglycosylase B, mltB [Methylobacterium extorquens AM1] Length = 393 Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 7/72 (9%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP R ++RL+ L G + + AV+ +Q+R GL Sbjct: 325 WPNGAARL-----DGPGLKRLQAGLAAKGLYGGEQDGRAG--PKLREAVRQYQIREGLPA 377 Query: 154 SGMVDSSTLEAM 165 G + LE + Sbjct: 378 DGYARPALLERL 389 >gi|227879015|ref|ZP_03996910.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] gi|256844233|ref|ZP_05549719.1| periplasmic protease [Lactobacillus crispatus 125-2-CHN] gi|256849367|ref|ZP_05554800.1| periplasmic protease [Lactobacillus crispatus MV-1A-US] gi|312977013|ref|ZP_07788762.1| peptidoglycan binding domain-containing protein [Lactobacillus crispatus CTV-05] gi|227861386|gb|EEJ69010.1| conserved hypothetical protein [Lactobacillus crispatus JV-V01] gi|256613311|gb|EEU18514.1| periplasmic protease [Lactobacillus crispatus 125-2-CHN] gi|256714143|gb|EEU29131.1| periplasmic protease [Lactobacillus crispatus MV-1A-US] gi|310896341|gb|EFQ45406.1| peptidoglycan binding domain-containing protein [Lactobacillus crispatus CTV-05] Length = 380 Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + ++ +AVK FQ H L +G V+ +T E M Sbjct: 180 AGTNYYNQATYNAVKNFQRSHHLPATGNVNLATWEKMGFSKKS 222 >gi|120609482|ref|YP_969160.1| peptidoglycan-binding domain-containing protein [Acidovorax citrulli AAC00-1] gi|120587946|gb|ABM31386.1| Peptidoglycan-binding domain 1 protein [Acidovorax citrulli AAC00-1] Length = 568 Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 12/24 (50%) Query: 144 LFQMRHGLDPSGMVDSSTLEAMNV 167 FQ+ GL P G+ TL +N Sbjct: 533 RFQVAQGLVPDGVAGPLTLMLLNR 556 >gi|83717816|ref|YP_439539.1| hypothetical protein BTH_II1343 [Burkholderia thailandensis E264] gi|83651641|gb|ABC35705.1| gp28 [Burkholderia thailandensis E264] Length = 250 Score = 37.9 bits (87), Expect = 3.3, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +S +D E AV+ Q L G+ T + Sbjct: 8 DVSHLYDEQTERAVQTLQAAASLVVDGIAGPKTYRVL 44 >gi|332976083|gb|EGK12951.1| N-acetylmuramoyl-L-alanine amidase [Desmospora sp. 8437] Length = 310 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 5/76 (6%) Query: 95 PELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSK-GLSVAFDAYVESAVKLFQMRHG-- 150 P R +G S +V+ L ERL+ G K G F + A FQ G Sbjct: 172 KSFPGRSAFQIGKSHPAVKVLGERLVTHGFGSYYKVGPGPTFTEVDKKACAAFQRAQGWS 231 Query: 151 -LDPSGMVDSSTLEAM 165 D G T E + Sbjct: 232 GSDADGFPGPVTWERL 247 >gi|256059683|ref|ZP_05449878.1| Putative peptidoglycan binding domain 1 [Brucella neotomae 5K33] Length = 382 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ L G D + + + +A++ FQ R+GL+P G L + Sbjct: 329 ELQTHLKALGYYDGNIDGKIGATSR--AAIEAFQQRNGLEPDGHPSKEVLSIL 379 >gi|148560592|ref|YP_001259693.1| hypothetical protein BOV_1796 [Brucella ovis ATCC 25840] gi|148371849|gb|ABQ61828.1| conserved hypothetical protein [Brucella ovis ATCC 25840] Length = 526 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 44/151 (29%), Gaps = 45/151 (29%) Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 ENGK+ + +G D + P I+Q + + +P Y + Sbjct: 408 ENGKLVVAYPSTIGSSDNPS------------------PSGIVQVE---RIAINPNYTYN 446 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR-NNTYMHDTP 327 I+ +V + PG + + I H TP Sbjct: 447 PKINFKQGNNDKVLII----------------PPGPNGPVGTVWIALSKPTYGI--HGTP 488 Query: 328 EPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 P + GCVR+ N +L + Sbjct: 489 APSRIGKTS---SHGCVRLTNWDAEELAKLV 516 >gi|291388662|ref|XP_002710873.1| PREDICTED: matrix metalloproteinase 24 [Oryctolagus cuniculus] Length = 574 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Query: 115 RERLIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 R L G L P + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 11 RSWLKSYGYLLPYDARASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 66 >gi|222874548|gb|EEF11679.1| predicted protein [Populus trichocarpa] Length = 238 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 6/71 (8%) Query: 98 PIRPLHLGNSSVSVQRLR---ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P + G ++ + LR ++L G + S+ ++A++ FQ L + Sbjct: 168 PSQTSAPGANAAGMS-LRAAQQKLNALGYTAGTPDGSMG--KNTQNALREFQRDQSLPQT 224 Query: 155 GMVDSSTLEAM 165 G +D +T +A+ Sbjct: 225 GRLDRATSQAL 235 >gi|224136988|ref|XP_002326995.1| predicted protein [Populus trichocarpa] gi|222835310|gb|EEE73745.1| predicted protein [Populus trichocarpa] Length = 295 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 111 VQRLRERLIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + L+ G L ++ FD E+A+ +Q + GL +G +D TL + Sbjct: 1 MSELKRYFHHFGYLPSQDLKSITDIFDDRFETAIVRYQAKLGLQTTGKLDLDTLNQI 57 >gi|153011588|ref|YP_001372802.1| lytic murein transglycosylase [Ochrobactrum anthropi ATCC 49188] gi|151563476|gb|ABS16973.1| lytic murein transglycosylase [Ochrobactrum anthropi ATCC 49188] Length = 412 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 Q L+ L G D + + + +A++ FQ R+GL P G L + Sbjct: 358 QELQTHLKALGYYDGNIDGKIG--STSRAAIEAFQQRNGLQPDGHPSKEVLSVL 409 >gi|21542428|sp|Q9R0S3|MMP17_MOUSE RecName: Full=Matrix metalloproteinase-17; Short=MMP-17; AltName: Full=Membrane-type matrix metalloproteinase 4; Short=MT-MMP 4; Short=MTMMP4; AltName: Full=Membrane-type-4 matrix metalloproteinase; Short=MT4-MMP; Short=MT4MMP; Flags: Precursor gi|8052272|emb|CAB92315.1| membrane-type-4 matrix metalloproteinase [Mus musculus] Length = 578 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 13/86 (15%) Query: 87 DILSRGG--WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD--AYVESAV 142 + + GG P L LG L G L P+ S + A+ Sbjct: 31 ALAAHGGCAAPAPRGEDLSLGVEW---------LSRFGYLPPADPASGQLQTQEELSKAI 81 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVP 168 Q GL+ +G++D +TL M P Sbjct: 82 TAMQQFGGLETTGILDEATLALMKTP 107 >gi|326917841|ref|XP_003205203.1| PREDICTED: matrix metalloproteinase-16-like [Meleagris gallopavo] Length = 609 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 47 LQKYGYLPPTDPRMSVLRSAETMQSAIAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 106 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 107 TRGSSKFNIRRKR 119 >gi|296454225|ref|YP_003661368.1| hypothetical protein BLJ_1081 [Bifidobacterium longum subsp. longum JDM301] gi|296183656|gb|ADH00538.1| hypothetical protein BLJ_1081 [Bifidobacterium longum subsp. longum JDM301] Length = 372 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 33/165 (20%) Query: 32 HASVLDEIINESYHSIVNDRFDNFLARVDM-GIDSDIPIISKETIAQTEKAIAFYQDILS 90 V ++N + ++D+ G + +P+ K+ I + + Sbjct: 63 TQEVTKGVLNAETRLGASLQYDDASDFAAASGTITQLPVAGKQ--------INTGEQVYE 114 Query: 91 RGGWPELPIRPLHLGNS------------SVSVQRLRERLIISGDLDPSKGLSVAFDAYV 138 G P PL G+ V +L + L G G F+ Sbjct: 115 MDGAPV----PLFHGDRPFWRTIGDGVSDGPDVTQLEQNLQELGFYGGEVG--PHFNWLT 168 Query: 139 ESAVKLFQMRHGLDPSGMVD---SSTLEAMNVPVDLRIRQLQVNL 180 A++ +Q GL + +T+ A+ +RI VN Sbjct: 169 REAIRQWQRSLGLTGDAVTGTFDPNTV-ALAAAAPIRIT--AVNA 210 >gi|166366413|ref|YP_001658686.1| hypothetical protein MAE_36720 [Microcystis aeruginosa NIES-843] gi|166088786|dbj|BAG03494.1| hypothetical protein MAE_36720 [Microcystis aeruginosa NIES-843] Length = 417 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 6/74 (8%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL---DPSGMVD 158 L +G+ + V +L+ +L G + F + AV+ FQ H L + +G+VD Sbjct: 169 LQVGSQGLQVGQLQAKLNEIGF--NCGRVDKIFGPKTKQAVENFQRDH-LGESEVTGIVD 225 Query: 159 SSTLEAMNVPVDLR 172 T + +R Sbjct: 226 ERTWNQIMDHPSVR 239 >gi|157961727|ref|YP_001501761.1| lytic murein transglycosylase [Shewanella pealeana ATCC 700345] gi|157846727|gb|ABV87226.1| lytic murein transglycosylase [Shewanella pealeana ATCC 700345] Length = 396 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 109 VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V+ L+ +L G + ++ FQ GL G D +T +A+ V Sbjct: 339 ARVKELQNQLNHLGY--DVGKADGILGSKSVKGLQSFQKSQGLVADGYPDEATFKALKV 395 >gi|13472965|ref|NP_104532.1| hypothetical protein mll3427 [Mesorhizobium loti MAFF303099] gi|14023713|dbj|BAB50318.1| mll3427 [Mesorhizobium loti MAFF303099] Length = 505 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 46/157 (29%) Query: 204 SLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + A + +GK+ +G D +P + I+ + + + D Sbjct: 371 EVYAYDASGKLVAAYPATIGSADTPSP---TGIHAV------------------SRIALD 409 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR-NNT 321 P Y + NI+ ++G+ + + PG + S I Sbjct: 410 PNYTYNPNINF--KQGQNDKILTI--------------PPGPNGPVGSVWIALDKPTYGI 453 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 H TPEP + + E+ GCVR+ N +L + Sbjct: 454 --HGTPEPS---KIGKTESHGCVRLTNWDARELAKLV 485 >gi|300694252|ref|YP_003750225.1| membrane-bound lytic murein transglycosylase b protein [Ralstonia solanacearum PSI07] gi|299076289|emb|CBJ35602.2| membrane-bound lytic murein transglycosylase b protein [Ralstonia solanacearum PSI07] Length = 404 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 N++ +++L++RL G DP + D ++A++ +Q L G S L + Sbjct: 345 NNATDIKQLQQRLADKGY-DPGTIDGLIGDRT-QTAIRAYQKDQHLPQDGYASRSLLARL 402 >gi|293381123|ref|ZP_06627140.1| NlpC/P60 family protein [Lactobacillus crispatus 214-1] gi|290922335|gb|EFD99320.1| NlpC/P60 family protein [Lactobacillus crispatus 214-1] Length = 375 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + ++ +AVK FQ H L +G V+ +T E M Sbjct: 175 AGTNYYNQATYNAVKNFQRSHHLPATGNVNLATWEKMGFSKKS 217 >gi|189069202|dbj|BAG35540.1| unnamed protein product [Homo sapiens] Length = 582 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L+ G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LLQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLQVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|171910699|ref|ZP_02926169.1| hypothetical protein VspiD_05985 [Verrucomicrobium spinosum DSM 4136] Length = 337 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%) Query: 185 KLLEQ--KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + G VLV++P L NG + RSTV G TP Sbjct: 45 WWHPEISPSGPIMVLVSVPNQILHVYRNGILIGRSTVSTGAKGHATP 91 >gi|103484506|dbj|BAE94745.1| membrane type-matrix metalloproteinase 16 [Gallus gallus] Length = 609 Score = 37.9 bits (87), Expect = 3.4, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 47 LQKYGYLPPTDPRMSVLRSAETMQSAIAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 106 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 107 TRGSSKFNIRRKR 119 >gi|294814632|ref|ZP_06773275.1| secreted protein [Streptomyces clavuligerus ATCC 27064] gi|294327231|gb|EFG08874.1| secreted protein [Streptomyces clavuligerus ATCC 27064] Length = 216 Score = 37.9 bits (87), Expect = 3.5, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%) Query: 141 AVKLFQMRHGL-DPSGMVDSSTLEAMNVPVDLRIR 174 AV+ FQ HG+ +G T + MNV + Sbjct: 50 AVRAFQKTHGISPAAGYAGPLTWQVMNVMTQQKAA 84 >gi|312197181|ref|YP_004017242.1| peptidoglycan-binding domain 1 protein [Frankia sp. EuI1c] gi|311228517|gb|ADP81372.1| Peptidoglycan-binding domain 1 protein [Frankia sp. EuI1c] Length = 251 Score = 37.9 bits (87), Expect = 3.5, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 13/41 (31%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F +AV+ FQ L +V T + Sbjct: 202 PGALSPDGVFGGMTANAVRAFQTAESLAADSVVGQRTWATL 242 >gi|224046469|ref|XP_002199883.1| PREDICTED: matrix metalloproteinase 16 [Taeniopygia guttata] Length = 609 Score = 37.9 bits (87), Expect = 3.5, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 47 LQKYGYLPPTDPRMSVLRSAETMQSAIAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 106 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 107 TRGSSKFNIRRKR 119 >gi|4126377|dbj|BAA36551.1| Membrane-type matrix metalloproteinase-1 [Capra hircus] Length = 582 Score = 37.9 bits (87), Expect = 3.5, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 38 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLRVTGKADADTMKAMRRPRCGVPDK 97 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 98 FGAEIKANVRRKR 110 >gi|81157905|dbj|BAE48203.1| matrix metalloproteinase 9 [Paralichthys olivaceus] Length = 267 Score = 37.9 bits (87), Expect = 3.5, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 7/84 (8%) Query: 91 RGGWPELPIRPLH---LGNSSVSVQR--LRER-LIISGDLDPSKGLSVAFDAYVESAVKL 144 + GW LP+R + G+ +V L E L G LD A+K+ Sbjct: 24 QDGW-SLPLRSISVTFPGDILKNVTDTDLAETYLKRFGYLDKMHRSGFQSMVSTAKALKM 82 Query: 145 FQMRHGLDPSGMVDSSTLEAMNVP 168 Q + GL +G +D STLEAM P Sbjct: 83 MQRQMGLKETGRLDKSTLEAMKQP 106 >gi|296483589|gb|DAA25704.1| matrix metalloproteinase-14 precursor [Bos taurus] Length = 582 Score = 37.9 bits (87), Expect = 3.5, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 38 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLRVTGKADADTMKAMRRPRCGVPDK 97 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 98 FGAEIKANVRRKR 110 >gi|261244996|ref|NP_001159653.1| matrix metalloproteinase-14 [Ovis aries] gi|256665391|gb|ACV04841.1| membrane-inserted matrix metallopeptidase 14 [Ovis aries] Length = 582 Score = 37.9 bits (87), Expect = 3.5, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 38 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLRVTGKADADTMKAMRRPRCGVPDK 97 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 98 FGAEIKANVRRKR 110 >gi|239941513|ref|ZP_04693450.1| hypothetical protein SrosN15_10992 [Streptomyces roseosporus NRRL 15998] gi|239987978|ref|ZP_04708642.1| hypothetical protein SrosN1_11776 [Streptomyces roseosporus NRRL 11379] Length = 432 Score = 37.9 bits (87), Expect = 3.5, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 4/68 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGD----LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G S+ V RL ++L+ G + L D A + Q G G Sbjct: 363 FKPGQSNSHVDRLGKQLVKKGYGKHYVSGPSPLWTEADRRNVEAFQRAQGWRGGAADGYP 422 Query: 158 DSSTLEAM 165 T + Sbjct: 423 GPETWRRL 430 >gi|110331901|gb|ABG67056.1| matrix metalloproteinase 14 preproprotein [Bos taurus] Length = 536 Score = 37.9 bits (87), Expect = 3.5, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 38 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLRVTGKADADTMKAMRRPRCGVPDK 97 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 98 FGAEIKANVRRKR 110 >gi|86133683|ref|ZP_01052265.1| conserved hypothetical protein [Polaribacter sp. MED152] gi|85820546|gb|EAQ41693.1| conserved hypothetical protein [Polaribacter sp. MED152] Length = 217 Score = 37.9 bits (87), Expect = 3.5, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 101 PLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSS 160 L+ G + + ++++L+ G+ + + + +A+K F+ ++ L G +D Sbjct: 153 KLYNGEKNAIIYEVQKKLVEQGE---TVRIDGVYRIETLNAIKAFEEKNNLLADGYLDEL 209 Query: 161 TLEAM 165 TLE + Sbjct: 210 TLEWL 214 >gi|153009062|ref|YP_001370277.1| N-acetylmuramoyl-L-alanine amidase [Ochrobactrum anthropi ATCC 49188] gi|151560950|gb|ABS14448.1| N-acetylmuramoyl-L-alanine amidase family 2 [Ochrobactrum anthropi ATCC 49188] Length = 268 Score = 37.9 bits (87), Expect = 3.6, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMR-HGLDPSGMVDSS 160 L G + V+ L+ L + G ++ FD E+ +K FQ + G+ D S Sbjct: 195 LARGENGQPVEALQSMLALYGY---EIAITGVFDEGTETVIKAFQRHFRTQNVDGVADVS 251 Query: 161 TLEAM 165 T++ + Sbjct: 252 TIDTL 256 >gi|292619299|ref|XP_002663942.1| PREDICTED: matrix metalloproteinase-25-like [Danio rerio] Length = 573 Score = 37.9 bits (87), Expect = 3.6, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + + +E A++ Q GL +G +DS TL MN P Sbjct: 39 LSRYGYLPPLDPRTGQLQSKDGIERAIREMQRFAGLKETGKLDSDTLTLMNTP 91 >gi|325679969|ref|ZP_08159538.1| ErfK/YbiS/YcfS/YnhG [Ruminococcus albus 8] gi|324108407|gb|EGC02654.1| ErfK/YbiS/YcfS/YnhG [Ruminococcus albus 8] Length = 603 Score = 37.9 bits (87), Expect = 3.6, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%) Query: 189 QKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRV--DRQTP 229 + G Y V++ A L ENG++ + S + G R TP Sbjct: 470 KDFGDTYFDVDLSAQHLWYYENGEMKMESDFVSGYPSESRNTP 512 >gi|283768499|ref|ZP_06341411.1| C-terminal processing peptidase [Bulleidia extructa W1219] gi|283104891|gb|EFC06263.1| C-terminal processing peptidase [Bulleidia extructa W1219] Length = 506 Score = 37.9 bits (87), Expect = 3.6, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 3/72 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLRER-LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 P+ + +S V + ++ + G F + AV FQ + GL+ Sbjct: 410 PKFKEGSILKEDSVSEVTKYSQKAMTYLGY--RPGRTDGYFSEQTKKAVLAFQRKEGLEV 467 Query: 154 SGMVDSSTLEAM 165 +G ++ T A+ Sbjct: 468 TGTINQKTYGAL 479 >gi|260818326|ref|XP_002604334.1| hypothetical protein BRAFLDRAFT_88624 [Branchiostoma floridae] gi|229289660|gb|EEN60345.1| hypothetical protein BRAFLDRAFT_88624 [Branchiostoma floridae] Length = 423 Score = 37.9 bits (87), Expect = 3.6, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 19/31 (61%) Query: 138 VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 V AV+ Q +GL +G+++ +TL A+ P Sbjct: 2 VAEAVRSVQKSYGLLATGILNPATLAAIRKP 32 >gi|159039235|ref|YP_001538488.1| peptidoglycan binding domain-containing protein [Salinispora arenicola CNS-205] gi|159039286|ref|YP_001538539.1| peptidoglycan binding domain-containing protein [Salinispora arenicola CNS-205] gi|157918070|gb|ABV99497.1| Peptidoglycan-binding domain 1 protein [Salinispora arenicola CNS-205] gi|157918121|gb|ABV99548.1| Peptidoglycan-binding domain 1 protein [Salinispora arenicola CNS-205] Length = 272 Score = 37.9 bits (87), Expect = 3.6, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 16/37 (43%) Query: 128 KGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G + ++ +K FQ GL G++ T +A Sbjct: 229 AGADGLYGPEYQALIKAFQADQGLTRDGLLGRKTWDA 265 >gi|110803522|ref|YP_699813.1| spore cortex-lytic enzyme SleC [Clostridium perfringens SM101] gi|110684023|gb|ABG87393.1| spore cortex-lytic enzyme SleC [Clostridium perfringens SM101] gi|226844841|gb|ACO87301.1| SleC [Clostridium perfringens] gi|226844845|gb|ACO87303.1| SleC [Clostridium perfringens] Length = 438 Score = 37.9 bits (87), Expect = 3.6, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G S V+ ++E+L L P + + AVK FQ L + Sbjct: 329 PGYTLKFGYSGEPVRVIQEQLNAISRAYPLIPKIAVDGKYGPKTREAVKTFQKIFDLPQT 388 Query: 155 GMVDSSTLE 163 G VD +T Sbjct: 389 GEVDYATWY 397 >gi|27806001|ref|NP_776815.1| matrix metalloproteinase-14 precursor [Bos taurus] gi|75056123|sp|Q9GLE4|MMP14_BOVIN RecName: Full=Matrix metalloproteinase-14; Short=MMP-14; AltName: Full=Membrane-type matrix metalloproteinase 1; Short=MT-MMP 1; Short=MTMMP1; AltName: Full=Membrane-type-1 matrix metalloproteinase; Short=MT1-MMP; Short=MT1MMP; Flags: Precursor gi|11055605|gb|AAG28170.1|AF290429_1 membrane-type matrix metalloprotease 1 [Bos taurus] Length = 582 Score = 37.9 bits (87), Expect = 3.6, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 38 LQQHGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLRVTGKADADTMKAMRRPRCGVPDK 97 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 98 FGAEIKANVRRKR 110 >gi|297838805|ref|XP_002887284.1| hypothetical protein ARALYDRAFT_476141 [Arabidopsis lyrata subsp. lyrata] gi|297333125|gb|EFH63543.1| hypothetical protein ARALYDRAFT_476141 [Arabidopsis lyrata subsp. lyrata] Length = 378 Score = 37.9 bits (87), Expect = 3.6, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Query: 105 GNSSVSVQRLRERLIISGDLDP--SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G + + R+++ G + S + FD +++AV+L+Q L+ +G +D+ T+ Sbjct: 53 GQNVEGLYRIKKYFQRFGYIPETFSGNFTDDFDDILKTAVELYQRNFKLNVTGELDAMTI 112 Query: 163 EAMNVP 168 + + +P Sbjct: 113 KHIVIP 118 >gi|291390212|ref|XP_002711594.1| PREDICTED: matrix metalloproteinase 15 [Oryctolagus cuniculus] Length = 668 Score = 37.9 bits (87), Expect = 3.6, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 9/96 (9%) Query: 118 LIISGDLD-PSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L PS+ +S A + SA+ Q +G+ +G++D T M P D Sbjct: 50 LRLYGYLPQPSRHMSTLRSAQILASALAEMQRFYGIPVTGVLDEETKAWMKRPRCGVPDQ 109 Query: 172 RIRQLQVNLMRIKK---LLEQKMGLRYVLVNIPAAS 204 ++ NL R +K L +K ++ +I + Sbjct: 110 FGVHVKANLRRRRKRYALTGRKWSNNHLTFSIQNYT 145 >gi|262047872|ref|ZP_06020820.1| periplasmic protease [Lactobacillus crispatus MV-3A-US] gi|260571816|gb|EEX28389.1| periplasmic protease [Lactobacillus crispatus MV-3A-US] Length = 380 Score = 37.9 bits (87), Expect = 3.6, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 + ++ +AVK FQ H L +G V+ +T E M Sbjct: 180 AGTNYYNQATYNAVKNFQRSHHLPATGNVNLATWEKMGFSKKS 222 >gi|226844843|gb|ACO87302.1| SleC [Clostridium perfringens] Length = 438 Score = 37.9 bits (87), Expect = 3.6, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G S V+ ++E+L L P + + AVK FQ L + Sbjct: 329 PGYTLKFGYSGEPVRVIQEQLNAISRAYPLIPKIAVDGKYGPKTREAVKTFQKIFDLPQT 388 Query: 155 GMVDSSTLE 163 G VD +T Sbjct: 389 GEVDYATWY 397 >gi|4835928|gb|AAD30300.1| MT3-MMP protein [Bos taurus] Length = 138 Score = 37.9 bits (87), Expect = 3.6, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L PS ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 31 LQKYGYLPPSDPRMSVLRSAETMQSALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 90 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 91 TRGSSKFNIRRKR 103 >gi|197103006|ref|NP_001124793.1| matrix metalloproteinase-14 precursor [Pongo abelii] gi|75070961|sp|Q5RES1|MMP14_PONAB RecName: Full=Matrix metalloproteinase-14; Short=MMP-14; Flags: Precursor gi|55725913|emb|CAH89736.1| hypothetical protein [Pongo abelii] Length = 582 Score = 37.9 bits (87), Expect = 3.6, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQKFYGLRVTGKADADTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|291441824|ref|ZP_06581214.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291344719|gb|EFE71675.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 256 Score = 37.5 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 16/36 (44%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 + + +SA + FQ GL G+V +T A Sbjct: 218 AVDGRYGPGSDSACRSFQSSKGLSVDGIVGPATWGA 253 >gi|302382909|ref|YP_003818732.1| ErfK/YbiS/YcfS/YnhG family protein [Brevundimonas subvibrioides ATCC 15264] gi|302193537|gb|ADL01109.1| ErfK/YbiS/YcfS/YnhG family protein [Brevundimonas subvibrioides ATCC 15264] Length = 370 Score = 37.5 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 84/256 (32%), Gaps = 69/256 (26%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 V + L G+L +++ +E + F + GL L A+N Sbjct: 168 GPFVATIPTDLAAQGELTA-----LSYRTPLEMLAERFHVTEGL----------LTALNP 212 Query: 168 PVD-LRIRQLQVNLMRIKKLLEQKMGL--RYVLVNIPAASLEAV-ENGKVGLRSTVIVGR 223 VD R Q + + + +Q + + V+ SL A +G + VG Sbjct: 213 GVDFARAGQAIL----VPAVADQPLPAAVTRIEVSKGEGSLRAFGADGTLLAFYPATVGS 268 Query: 224 VDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFV 283 R P R+ + + +P Y D + D K+V V Sbjct: 269 SARPAP--TGRLTVV-------------------GVANEPDYTYDPDRVSYDRGDKKVVV 307 Query: 284 EEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSG 342 G N + S IE +TY +H TPEP + + +SG Sbjct: 308 -----------------PAGPNNPVGSVWIEL--SRDTYGIHGTPEPS---KIAKTASSG 345 Query: 343 CVRVRN--IIDLDVWL 356 CVR+ N L + Sbjct: 346 CVRLTNWSAEQLAKAV 361 >gi|239933456|ref|ZP_04690409.1| N-acetylmuramoyl-L-alanine amidase [Streptomyces ghanaensis ATCC 14672] Length = 246 Score = 37.5 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 16/36 (44%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 + + +SA + FQ GL G+V +T A Sbjct: 208 AVDGRYGPGSDSACRSFQSSKGLSVDGIVGPATWGA 243 >gi|262198894|ref|YP_003270103.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Haliangium ochraceum DSM 14365] gi|262082241|gb|ACY18210.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Haliangium ochraceum DSM 14365] Length = 233 Score = 37.5 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 8/30 (26%), Positives = 14/30 (46%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 A++ + + FQ +HGL G T + Sbjct: 19 AHLTALTRRFQDQHGLVADGKCGPLTRAVL 48 >gi|281182734|ref|NP_001162479.1| matrix metalloproteinase-24 [Papio anubis] gi|297259948|ref|XP_001100890.2| PREDICTED: matrix metalloproteinase-24 [Macaca mulatta] gi|164623742|gb|ABY64668.1| matrix metallopeptidase 24 (predicted) [Papio anubis] Length = 598 Score = 37.5 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 38 LKSYGYLLPYDSRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 90 >gi|254975977|ref|ZP_05272449.1| hypothetical protein CdifQC_11719 [Clostridium difficile QCD-66c26] gi|255093365|ref|ZP_05322843.1| hypothetical protein CdifC_12004 [Clostridium difficile CIP 107932] gi|255101545|ref|ZP_05330522.1| hypothetical protein CdifQCD-6_12099 [Clostridium difficile QCD-63q42] gi|255315110|ref|ZP_05356693.1| hypothetical protein CdifQCD-7_12197 [Clostridium difficile QCD-76w55] gi|255517780|ref|ZP_05385456.1| hypothetical protein CdifQCD-_11761 [Clostridium difficile QCD-97b34] gi|255650895|ref|ZP_05397797.1| hypothetical protein CdifQCD_11961 [Clostridium difficile QCD-37x79] gi|306520782|ref|ZP_07407129.1| putative peptidoglycan-binding/hydrolysing protein [Clostridium difficile QCD-32g58] Length = 195 Score = 37.5 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 16/36 (44%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 F +AVK Q R GL G+V ST +A Sbjct: 155 DDDSEFGPATYNAVKSLQGRLGLTRDGIVGRSTWDA 190 >gi|114567173|ref|YP_754327.1| hypothetical protein Swol_1658 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338108|gb|ABI68956.1| hypothetical protein Swol_1658 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 183 Score = 37.5 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 12/93 (12%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGL 130 S+ +A + A Y+D + + I+ L + + L ++ L Sbjct: 99 SEPGVAPVRRPRASYRD----EPYSRVNIQLLTIEELDAVIAELIKQ----EYLQQKPAN 150 Query: 131 SVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 + +A+ FQ H L P+G VD++TL+ Sbjct: 151 E----EELSNALSQFQSDHNLTPTGQVDAATLK 179 >gi|285808600|gb|ADC36119.1| putative lipoprotein [uncultured bacterium 253] Length = 273 Score = 37.5 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 7/107 (6%) Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 RL G + + FD +SA+ FQ G +G + + L+A+ + R Sbjct: 38 RRLSDLGYWTGT--IDGVFDPGTKSALIAFQKWEGRPITGELTPNELQAIRTSAPPKARD 95 Query: 176 -----LQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRS 217 ++V+L R ++ G VL + ++ G+ + Sbjct: 96 FGYAHIEVDLDRQVLMVVNDAGGVRVLPVATGNEKQFIDEGQESVAH 142 >gi|282882201|ref|ZP_06290840.1| ErfK/YbiS/YcfS/YnhG family protein [Peptoniphilus lacrimalis 315-B] gi|281297966|gb|EFA90423.1| ErfK/YbiS/YcfS/YnhG family protein [Peptoniphilus lacrimalis 315-B] Length = 269 Score = 37.5 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 10/103 (9%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 +K FQ + SG +D+ T EA+ D ++ + N G ++ VN Sbjct: 46 IKKFQATMNIPISGTLDNKTKEAL-YNKDYKVWDMVTN--------PPSKGY-WIAVNKS 95 Query: 202 AASLEAVENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYW 244 L K + V +G QTP +I + NP W Sbjct: 96 RRILTMYMGDKSLGKYPVTLGTSATQTPSGRGKIGNMHKNPAW 138 >gi|218673768|ref|ZP_03523437.1| putative hemaglutinin protein [Rhizobium etli GR56] Length = 182 Score = 37.5 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL 180 A +A+K FQ G P G V +T+ A+ R +Q+ + Sbjct: 142 AKTVAAIKNFQKSIGQQPDGKVTDATVRAL----LERNKQVAKAI 182 >gi|114764039|ref|ZP_01443278.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Pelagibaca bermudensis HTCC2601] gi|114543397|gb|EAU46412.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseovarius sp. HTCC2601] Length = 186 Score = 37.5 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Query: 298 FRQDPGKINAMA-STKIEFYSRNNTYM--HDTPEPILFNNVVRFETSGCVRV 346 + Q G N + F + +TY H T P ++ R ++GC+R+ Sbjct: 117 YVQPGGPSNPLGARALYLFQNGRDTYFRIHGTTAP---ESIGRSVSNGCIRM 165 >gi|73992282|ref|XP_542973.2| PREDICTED: similar to Matrix metalloproteinase-24 precursor (MMP-24) (Membrane-type matrix metalloproteinase 5) (MT-MMP 5) (Membrane-type-5 matrix metalloproteinase) (MT5-MMP) [Canis familiaris] Length = 626 Score = 37.5 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 66 LKSYGYLLPYDSRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 118 >gi|324327161|gb|ADY22421.1| hypothetical protein YBT020_15955 [Bacillus thuringiensis serovar finitimus YBT-020] Length = 481 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 385 >gi|301054720|ref|YP_003792931.1| hypothetical protein BACI_c31750 [Bacillus anthracis CI] gi|300376889|gb|ADK05793.1| conserved hypothetical protein [Bacillus cereus biovar anthracis str. CI] Length = 481 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 385 >gi|296231221|ref|XP_002761064.1| PREDICTED: matrix metalloproteinase-15 [Callithrix jacchus] Length = 666 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%) Query: 118 LIISGDLD-PSKGLSV-AFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L PS+ +S + SA+ Q +G+ +G++D T + M P D Sbjct: 57 LRLYGYLPQPSRHMSTMRSTQILASALAEMQRFYGIPVTGVLDEETKKWMKRPRCGVPDQ 116 Query: 172 RIRQLQVNLMRIK 184 +++ NL R + Sbjct: 117 FGVRVKANLRRRR 129 >gi|228915805|ref|ZP_04079382.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843847|gb|EEM88919.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 481 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 385 >gi|228928265|ref|ZP_04091306.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228831312|gb|EEM76908.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 481 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 385 >gi|228934473|ref|ZP_04097308.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825110|gb|EEM70907.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 481 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 385 >gi|228946829|ref|ZP_04109131.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812816|gb|EEM59135.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 481 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 385 >gi|228986302|ref|ZP_04146440.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773439|gb|EEM21867.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 488 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 361 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 392 >gi|229030907|ref|ZP_04186926.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus AH1271] gi|228730401|gb|EEL81362.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus AH1271] Length = 481 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 385 >gi|229092187|ref|ZP_04223368.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus Rock3-42] gi|228691178|gb|EEL44942.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus Rock3-42] Length = 481 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 385 >gi|229122746|ref|ZP_04251955.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus 95/8201] gi|228660610|gb|EEL16241.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus 95/8201] Length = 481 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 385 >gi|229139846|ref|ZP_04268412.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus BDRD-ST26] gi|228643626|gb|EEK99891.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus BDRD-ST26] Length = 488 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 361 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 392 >gi|229156814|ref|ZP_04284901.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus ATCC 4342] gi|228626734|gb|EEK83474.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus ATCC 4342] Length = 488 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 361 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 392 >gi|229173877|ref|ZP_04301415.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus MM3] gi|228609515|gb|EEK66799.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus MM3] Length = 488 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 361 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 392 >gi|227818557|ref|YP_002822528.1| exported ErfK/YbiS/YhnG family protein [Sinorhizobium fredii NGR234] gi|227337556|gb|ACP21775.1| putative exported ErfK/YbiS/YhnG family protein [Sinorhizobium fredii NGR234] Length = 327 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 8/57 (14%) Query: 303 GKINAMASTKIEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 G + S I+ H TPEP L V + + GC+R+ N +L + Sbjct: 266 GPNGPVGSVWIDLTEPTYGI--HGTPEPSL---VDKAGSHGCIRLTNWDAEELAAMV 317 >gi|222096701|ref|YP_002530758.1| hypothetical protein BCQ_3041 [Bacillus cereus Q1] gi|221240759|gb|ACM13469.1| conserved hypothetical protein [Bacillus cereus Q1] Length = 481 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 385 >gi|196037760|ref|ZP_03105070.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] gi|196031030|gb|EDX69627.1| conserved hypothetical protein [Bacillus cereus NVH0597-99] Length = 481 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 385 >gi|196032524|ref|ZP_03099938.1| conserved hypothetical protein [Bacillus cereus W] gi|195995275|gb|EDX59229.1| conserved hypothetical protein [Bacillus cereus W] Length = 481 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 385 >gi|196043115|ref|ZP_03110354.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|218904354|ref|YP_002452188.1| hypothetical protein BCAH820_3238 [Bacillus cereus AH820] gi|225865151|ref|YP_002750529.1| hypothetical protein BCA_3260 [Bacillus cereus 03BB102] gi|229185424|ref|ZP_04312606.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus BGSC 6E1] gi|196026599|gb|EDX65267.1| conserved hypothetical protein [Bacillus cereus 03BB108] gi|218535071|gb|ACK87469.1| conserved hypothetical protein [Bacillus cereus AH820] gi|225787370|gb|ACO27587.1| conserved hypothetical protein [Bacillus cereus 03BB102] gi|228598012|gb|EEK55650.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus BGSC 6E1] Length = 481 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 385 >gi|206974539|ref|ZP_03235455.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217960643|ref|YP_002339207.1| hypothetical protein BCAH187_A3259 [Bacillus cereus AH187] gi|206747182|gb|EDZ58573.1| conserved hypothetical protein [Bacillus cereus H3081.97] gi|217064141|gb|ACJ78391.1| conserved hypothetical protein [Bacillus cereus AH187] Length = 481 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 385 >gi|118478503|ref|YP_895654.1| hypothetical protein BALH_2876 [Bacillus thuringiensis str. Al Hakam] gi|118417728|gb|ABK86147.1| peptidoglycan transpeptidase precursor, ErfK-YbiS-YhnG family [Bacillus thuringiensis str. Al Hakam] Length = 482 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 355 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 386 >gi|49479514|ref|YP_037312.1| hypothetical protein BT9727_2989 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331070|gb|AAT61716.1| conserved hypothetical protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 482 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 355 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 386 >gi|49186007|ref|YP_029259.1| hypothetical protein BAS3002 [Bacillus anthracis str. Sterne] gi|49179934|gb|AAT55310.1| conserved hypothetical protein [Bacillus anthracis str. Sterne] Length = 482 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 355 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 386 >gi|52142316|ref|YP_084514.1| hypothetical protein BCZK2927 [Bacillus cereus E33L] gi|51975785|gb|AAU17335.1| conserved hypothetical protein [Bacillus cereus E33L] Length = 482 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 355 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 386 >gi|47564367|ref|ZP_00235412.1| ErfK/YbiS/YcfS/YnhG family protein, putative [Bacillus cereus G9241] gi|47558519|gb|EAL16842.1| ErfK/YbiS/YcfS/YnhG family protein, putative [Bacillus cereus G9241] Length = 416 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 289 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 320 >gi|30263161|ref|NP_845538.1| hypothetical protein BA_3232 [Bacillus anthracis str. Ames] gi|47528522|ref|YP_019871.1| hypothetical protein GBAA_3232 [Bacillus anthracis str. 'Ames Ancestor'] gi|65320487|ref|ZP_00393446.1| COG1376: Uncharacterized protein conserved in bacteria [Bacillus anthracis str. A2012] gi|165868395|ref|ZP_02213055.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167631714|ref|ZP_02390041.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|167637176|ref|ZP_02395456.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|170684722|ref|ZP_02875947.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|170705220|ref|ZP_02895685.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|177650013|ref|ZP_02933014.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|227813976|ref|YP_002813985.1| hypothetical protein BAMEG_1382 [Bacillus anthracis str. CDC 684] gi|229600377|ref|YP_002867428.1| hypothetical protein BAA_3279 [Bacillus anthracis str. A0248] gi|254685764|ref|ZP_05149623.1| hypothetical protein BantC_18170 [Bacillus anthracis str. CNEVA-9066] gi|254723173|ref|ZP_05184961.1| hypothetical protein BantA1_11949 [Bacillus anthracis str. A1055] gi|254738234|ref|ZP_05195937.1| hypothetical protein BantWNA_24004 [Bacillus anthracis str. Western North America USA6153] gi|254742598|ref|ZP_05200283.1| hypothetical protein BantKB_16567 [Bacillus anthracis str. Kruger B] gi|254752549|ref|ZP_05204585.1| hypothetical protein BantV_08776 [Bacillus anthracis str. Vollum] gi|254761065|ref|ZP_05213089.1| hypothetical protein BantA9_22376 [Bacillus anthracis str. Australia 94] gi|30257795|gb|AAP27024.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gi|47503670|gb|AAT32346.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames Ancestor'] gi|164715121|gb|EDR20638.1| conserved hypothetical protein [Bacillus anthracis str. A0488] gi|167514683|gb|EDR90049.1| conserved hypothetical protein [Bacillus anthracis str. A0193] gi|167532012|gb|EDR94648.1| conserved hypothetical protein [Bacillus anthracis str. A0442] gi|170130075|gb|EDS98937.1| conserved hypothetical protein [Bacillus anthracis str. A0389] gi|170670982|gb|EDT21720.1| conserved hypothetical protein [Bacillus anthracis str. A0465] gi|172083965|gb|EDT69024.1| conserved hypothetical protein [Bacillus anthracis str. A0174] gi|227003829|gb|ACP13572.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684] gi|229264785|gb|ACQ46422.1| conserved hypothetical protein [Bacillus anthracis str. A0248] Length = 481 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 385 >gi|83943814|ref|ZP_00956272.1| peptidoglycan-binding protein, putative [Sulfitobacter sp. EE-36] gi|83845494|gb|EAP83373.1| peptidoglycan-binding protein, putative [Sulfitobacter sp. EE-36] Length = 375 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 36/133 (27%), Gaps = 17/133 (12%) Query: 48 VNDRFDNFLARVDMGIDSDIPIISKETIA--QTEKAIAFYQ-------------DILSRG 92 A + P A KAI Y D ++ G Sbjct: 244 WGAEMGTAAASSATPVQILQPDAGGPRFAIFNNFKAIKRYNNSDNYAIGVGHLSDRIAGG 303 Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G + P G + + L+ERL G + G A+ +Q GL Sbjct: 304 GPIQASFGPDKYGLTIDDRKALQERLTARGF--DTDGTDGVIGPNSRKAITAYQQSQGLP 361 Query: 153 PSGMVDSSTLEAM 165 +G L + Sbjct: 362 ATGDPSRELLARL 374 >gi|47523560|ref|NP_999404.1| matrix metalloproteinase-14 precursor [Sus scrofa] gi|11386723|sp|Q9XT90|MMP14_PIG RecName: Full=Matrix metalloproteinase-14; Short=MMP-14; AltName: Full=Membrane-type matrix metalloproteinase 1; Short=MT-MMP 1; Short=MTMMP1; AltName: Full=Membrane-type-1 matrix metalloproteinase; Short=MT1-MMP; Short=MT1MMP; Flags: Precursor gi|5051632|gb|AAD38324.1|AF067419_1 membrane-type 1 matrix metalloproteinase [Sus scrofa] Length = 580 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 37 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLRVTGKADADTMKAMRRPRCGVPDK 96 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 97 FGAEIKANVRRKR 109 >gi|296219419|ref|XP_002755837.1| PREDICTED: matrix metalloproteinase-25 [Callithrix jacchus] Length = 685 Score = 37.5 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P + + A+K+ Q GL +G++D T+ M P Sbjct: 43 LTRYGYLPPPDPAQAQLQSPEKLSDAIKVMQRFAGLPETGLMDPRTVATMRKPRCSLPDV 102 Query: 176 LQVN-LMRIKK 185 L V L+R ++ Sbjct: 103 LGVAGLVRRRR 113 >gi|228908955|ref|ZP_04072785.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis IBL 200] gi|228850677|gb|EEM95501.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis IBL 200] Length = 498 Score = 37.5 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 371 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 402 >gi|228959430|ref|ZP_04121120.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800264|gb|EEM47191.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 498 Score = 37.5 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 371 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 402 >gi|228940285|ref|ZP_04102856.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973201|ref|ZP_04133790.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982220|ref|ZP_04142506.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis Bt407] gi|228777507|gb|EEM25788.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis Bt407] gi|228786397|gb|EEM34387.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819411|gb|EEM65465.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 498 Score = 37.5 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 371 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 402 >gi|229051665|ref|ZP_04195134.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus AH676] gi|228721698|gb|EEL73173.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus AH676] Length = 498 Score = 37.5 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 371 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 402 >gi|229070679|ref|ZP_04203915.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus F65185] gi|228712446|gb|EEL64385.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus F65185] Length = 498 Score = 37.5 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 371 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 402 >gi|229128488|ref|ZP_04257467.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus BDRD-Cer4] gi|228654991|gb|EEL10850.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus BDRD-Cer4] Length = 498 Score = 37.5 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 371 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 402 >gi|229145792|ref|ZP_04274172.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus BDRD-ST24] gi|228637623|gb|EEK94073.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus BDRD-ST24] Length = 498 Score = 37.5 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 371 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 402 >gi|229151389|ref|ZP_04279592.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus m1550] gi|228631932|gb|EEK88558.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus m1550] Length = 498 Score = 37.5 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 371 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 402 >gi|218230979|ref|YP_002367930.1| hypothetical protein BCB4264_A3224 [Bacillus cereus B4264] gi|218158936|gb|ACK58928.1| conserved hypothetical protein [Bacillus cereus B4264] Length = 498 Score = 37.5 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 371 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 402 >gi|83375894|gb|ABC17785.1| matrix metalloproteinase 24 variant [Homo sapiens] Length = 593 Score = 37.5 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 33 LKSYGYLLPYDSRASALHSAKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 85 >gi|83955291|ref|ZP_00963946.1| peptidoglycan-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83840284|gb|EAP79458.1| peptidoglycan-binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 372 Score = 37.5 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 36/133 (27%), Gaps = 17/133 (12%) Query: 48 VNDRFDNFLARVDMGIDSDIPIISKETIA--QTEKAIAFYQ-------------DILSRG 92 A + P A KAI Y D ++ G Sbjct: 241 WGAEMGTAAASSATPVQILQPDAGGPRFAIFNNFKAIKRYNNSDNYAIGVGHLSDRIAGG 300 Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G + P G + + L+ERL G + G A+ +Q GL Sbjct: 301 GPIQASFGPDKYGLTIDDRKALQERLTARGF--DTDGTDGVIGPNSRKAITAYQQSQGLP 358 Query: 153 PSGMVDSSTLEAM 165 +G L + Sbjct: 359 ATGDPSRELLARL 371 >gi|296503721|ref|YP_003665421.1| hypothetical protein BMB171_C2891 [Bacillus thuringiensis BMB171] gi|296324773|gb|ADH07701.1| hypothetical protein BMB171_C2891 [Bacillus thuringiensis BMB171] Length = 481 Score = 37.5 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 385 >gi|212635639|ref|YP_002312164.1| membrane-bound lytic transglycolase-like protein [Shewanella piezotolerans WP3] gi|212557123|gb|ACJ29577.1| Membrane-bound lytic transglycolase-like protein [Shewanella piezotolerans WP3] Length = 396 Score = 37.5 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Query: 97 LPIRPLH-LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L ++P S V+ L+ +L G D K + + ++ FQ +GL G Sbjct: 326 LNVKPPKMPNLSRARVKALQSQLNALGF-DVGKPDGILGSKSL-KGLQAFQKGNGLVADG 383 Query: 156 MVDSSTLEAMNV 167 + +T +A+ V Sbjct: 384 YPNEATFKALGV 395 >gi|166831586|gb|ABY90111.1| matrix metalloproteinase 24 preproprotein (predicted) [Callithrix jacchus] Length = 564 Score = 37.5 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 4 LKSYGYLLPYDSRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 56 >gi|122889873|emb|CAM13979.1| matrix metalloproteinase 16 [Mus musculus] gi|123229797|emb|CAM18849.1| matrix metalloproteinase 16 [Mus musculus] Length = 127 Score = 37.5 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 47 LQKYGYLPPTDPRMSVLRSAETMQSALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 106 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 107 TRGSSKFNIRRKR 119 >gi|218681755|ref|ZP_03529530.1| Peptidoglycan-binding domain 1 protein [Rhizobium etli CIAT 894] Length = 225 Score = 37.5 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + +++ ++ L +G D A +A+K FQ G +P G V +T++A+ Sbjct: 157 DMKKAIRNIQAILNNNGF-DAGAPDGEM-GAKTVTAIKSFQKSIGQEPDGKVTDATVKAL 214 >gi|149579401|ref|XP_001519031.1| PREDICTED: similar to matrix metalloproteinase 28 [Ornithorhynchus anatinus] Length = 421 Score = 37.5 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 7/54 (12%) Query: 118 LIISGDLDP---SKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L +FD AV+ FQ L SG++D++TL M P Sbjct: 61 LGRYGYLRERVGEAPSPESFD----DAVREFQWTARLPVSGVLDAATLRQMKRP 110 >gi|326940926|gb|AEA16822.1| hypothetical protein CT43_CH3151 [Bacillus thuringiensis serovar chinensis CT-43] Length = 481 Score = 37.5 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 385 >gi|228901710|ref|ZP_04065883.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis IBL 4222] gi|228857939|gb|EEN02426.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis IBL 4222] Length = 498 Score = 37.5 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 371 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 402 >gi|228921867|ref|ZP_04085180.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837792|gb|EEM83120.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 498 Score = 37.5 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 371 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 402 >gi|228953495|ref|ZP_04115540.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806234|gb|EEM52808.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 498 Score = 37.5 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 371 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 402 >gi|228966135|ref|ZP_04127198.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228793620|gb|EEM41160.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 498 Score = 37.5 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 371 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 402 >gi|218898274|ref|YP_002446685.1| hypothetical protein BCG9842_B2030 [Bacillus cereus G9842] gi|218545295|gb|ACK97689.1| conserved hypothetical protein [Bacillus cereus G9842] Length = 481 Score = 37.5 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 385 >gi|30021313|ref|NP_832944.1| hypothetical protein BC3203 [Bacillus cereus ATCC 14579] gi|29896867|gb|AAP10145.1| hypothetical Exported Protein [Bacillus cereus ATCC 14579] Length = 498 Score = 37.5 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 371 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 402 >gi|229012411|ref|ZP_04169587.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus mycoides DSM 2048] gi|228748862|gb|EEL98711.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus mycoides DSM 2048] Length = 488 Score = 37.5 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 361 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 392 >gi|229134053|ref|ZP_04262873.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus BDRD-ST196] gi|228649388|gb|EEL05403.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus BDRD-ST196] Length = 488 Score = 37.5 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 361 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 392 >gi|229179478|ref|ZP_04306831.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus 172560W] gi|228603979|gb|EEK61447.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus 172560W] Length = 498 Score = 37.5 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 371 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 402 >gi|167745359|ref|ZP_02417486.1| hypothetical protein ANACAC_00050 [Anaerostipes caccae DSM 14662] gi|317473097|ref|ZP_07932396.1| peptidoglycan binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167655080|gb|EDR99209.1| hypothetical protein ANACAC_00050 [Anaerostipes caccae DSM 14662] gi|316899435|gb|EFV21450.1| peptidoglycan binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 411 Score = 37.5 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G++ V++++E+L I+ D P+ + + AV++FQ GL + Sbjct: 326 PGYDLTIGSTGDKVRQMQEQLNRIAKDYPSIPTIPVDGTYGQQTADAVRVFQNVFGLGQT 385 Query: 155 GMVDSSTLE 163 G+VD T Sbjct: 386 GVVDYPTWY 394 >gi|5729929|ref|NP_006681.1| matrix metalloproteinase-24 preproprotein [Homo sapiens] gi|332858203|ref|XP_003316927.1| PREDICTED: matrix metalloproteinase-24 [Pan troglodytes] gi|12585280|sp|Q9Y5R2|MMP24_HUMAN RecName: Full=Matrix metalloproteinase-24; Short=MMP-24; AltName: Full=Membrane-type matrix metalloproteinase 5; Short=MT-MMP 5; Short=MTMMP5; AltName: Full=Membrane-type-5 matrix metalloproteinase; Short=MT5-MMP; Short=MT5MMP; Contains: RecName: Full=Processed matrix metalloproteinase-24; Flags: Precursor gi|5381386|gb|AAD42962.1|AF131284_1 membrane type 5 matrix metalloproteinase [Homo sapiens] gi|5689367|dbj|BAA82967.1| membrane-type-5 matrix metalloproteinase [Homo sapiens] gi|220675561|emb|CAX12722.1| matrix metallopeptidase 24 (membrane-inserted) [Homo sapiens] gi|225000844|gb|AAI72450.1| Matrix metallopeptidase 24 (membrane-inserted) [synthetic construct] Length = 645 Score = 37.5 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 85 LKSYGYLLPYDSRASALHSAKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 137 >gi|163940877|ref|YP_001645761.1| hypothetical protein BcerKBAB4_2947 [Bacillus weihenstephanensis KBAB4] gi|163863074|gb|ABY44133.1| conserved hypothetical protein [Bacillus weihenstephanensis KBAB4] Length = 481 Score = 37.5 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 385 >gi|312376438|gb|EFR23519.1| hypothetical protein AND_12716 [Anopheles darlingi] Length = 1009 Score = 37.5 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 21/91 (23%) Query: 188 EQKMGLRYVLVNIPAASL-----------EAVEN--GKVGLRSTVIVGRVDRQTPILHSR 234 + + N+ L + + G +IV D+ T S Sbjct: 618 PNPLCQPKITENLATFELSLKNIYDCGVTRVINHITGNKVFYHRIIVEEEDQNTSSSSSS 677 Query: 235 --------INRIMFNPYWVIPRSIIQKDMMA 257 + ++ NP + +P I+++D++ Sbjct: 678 SSSKEVVSVKCMLANPEFNVPHGIVKRDILP 708 >gi|315498862|ref|YP_004087666.1| n-acetylmuramyl-l-alanine amidase, negative regulator of ampc, ampd [Asticcacaulis excentricus CB 48] gi|315416874|gb|ADU13515.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Asticcacaulis excentricus CB 48] Length = 245 Score = 37.5 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 17/95 (17%) Query: 80 KAIAFYQDILSRGGW--PELPIR-----PLHLGNSSVSVQRLRERLIISGDLDPSKGLSV 132 +A+A G W P +P PL +G++ V L+ L G Sbjct: 147 QALAE----AGHGLWVDPPVPPEGVMGPPLDIGDTGPGVFALQGALGKLGY---DILPGG 199 Query: 133 AFDAYVESAVKLFQMRHGLDP--SGMVDSSTLEAM 165 +DA ++ + FQ RH + G D+ T + Sbjct: 200 PYDAETQAIITAFQ-RHWVQTRIDGKADALTRVRL 233 >gi|229110645|ref|ZP_04240210.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus Rock1-15] gi|228672818|gb|EEL28097.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus Rock1-15] Length = 498 Score = 37.5 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 371 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 402 >gi|229060804|ref|ZP_04198159.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus AH603] gi|228718451|gb|EEL70083.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus AH603] Length = 488 Score = 37.5 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 361 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 392 >gi|229164832|ref|ZP_04292655.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus R309803] gi|228618623|gb|EEK75626.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus R309803] Length = 488 Score = 37.5 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 361 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 392 >gi|229170823|ref|ZP_04298437.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus AH621] gi|228612661|gb|EEK69870.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus AH621] Length = 488 Score = 37.5 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 361 GDTYAEVSIADQQIWIYKDGKLVVTTNVVTGK 392 >gi|29126959|gb|AAH47614.1| MMP24 protein [Homo sapiens] Length = 626 Score = 37.5 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 66 LKSYGYLLPYDSRASALHSAKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 118 >gi|284041696|ref|YP_003392036.1| peptidoglycan-binding protein [Conexibacter woesei DSM 14684] gi|283945917|gb|ADB48661.1| Peptidoglycan-binding domain 1 protein [Conexibacter woesei DSM 14684] Length = 605 Score = 37.5 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 4/64 (6%) Query: 96 ELPI-RPLHLG-NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 +P R L G + V++L + L G + F + AV+ +Q L Sbjct: 126 TVPAWRTLKEGIDDGEDVRQLEQNLAALGY--DPGTVDDDFTSSTADAVERWQDAWDLKE 183 Query: 154 SGMV 157 +G V Sbjct: 184 TGEV 187 >gi|260467165|ref|ZP_05813343.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] gi|259029089|gb|EEW30387.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] Length = 505 Score = 37.5 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 46/157 (29%) Query: 204 SLEAVE-NGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + A + GK+ +G D +P + I+ + + + D Sbjct: 371 EVYAYDAGGKLVAAYPATIGSADTPSP---TGIHTV------------------SRIALD 409 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR-NNT 321 P Y + NI+ ++G+ + + PG + S I Sbjct: 410 PNYTYNPNINF--KQGQNDKILTI--------------PPGPNGPVGSVWIALDKPTYGI 453 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 H TPEP + + E+ GCVR+ N +L + Sbjct: 454 --HGTPEPS---KIGKTESHGCVRLTNWDARELAKLV 485 >gi|229083087|ref|ZP_04215491.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus Rock4-2] gi|228700245|gb|EEL52827.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus Rock4-2] Length = 498 Score = 37.5 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 371 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 402 >gi|206968878|ref|ZP_03229833.1| conserved hypothetical protein [Bacillus cereus AH1134] gi|206735919|gb|EDZ53077.1| conserved hypothetical protein [Bacillus cereus AH1134] Length = 481 Score = 37.5 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 354 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 385 >gi|47212180|emb|CAF95128.1| unnamed protein product [Tetraodon nigroviridis] Length = 351 Score = 37.5 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P ++ + A++ Q GL +G+ D TL M P Sbjct: 3 LSRFGYLPPPDPVTGQLQTQEALTQAIRAMQRFGGLKETGIFDQDTLLLMGTP 55 >gi|229191289|ref|ZP_04318276.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus ATCC 10876] gi|228592206|gb|EEK50038.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus cereus ATCC 10876] Length = 498 Score = 37.5 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 17/32 (53%) Query: 192 GLRYVLVNIPAASLEAVENGKVGLRSTVIVGR 223 G Y V+I + ++GK+ + + V+ G+ Sbjct: 371 GDTYAEVSIAEQQIWIYKDGKLVVTTNVVTGK 402 >gi|154502780|ref|ZP_02039840.1| hypothetical protein RUMGNA_00594 [Ruminococcus gnavus ATCC 29149] gi|153796663|gb|EDN79083.1| hypothetical protein RUMGNA_00594 [Ruminococcus gnavus ATCC 29149] Length = 514 Score = 37.5 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVG--RVDRQTPI 230 EQ G ++ V++ + +++G V + + V+ G +R TP Sbjct: 378 EQDWGTTFIEVDLSTQHMWYIKDGSVAMETDVVTGVPVPERITPE 422 >gi|134097608|ref|YP_001103269.1| CHAD domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291008473|ref|ZP_06566446.1| CHAD domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|133910231|emb|CAM00344.1| CHAD domain containing protein [Saccharopolyspora erythraea NRRL 2338] Length = 309 Score = 37.5 bits (86), Expect = 4.1, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 20/131 (15%) Query: 42 ESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAF-YQDILSRGGWPELPIR 100 E ++ +DR+ + + + S++P + + + + Y+ + G Sbjct: 148 ELLAALDSDRYMTLVQSLAAAVRSELPGSDLDGPDELRRLVDKEYRKLRKAVG------- 200 Query: 101 PLHLGN--SSVSVQRLR---ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 LG+ S + LR +RL + +L S + A K FQ G Sbjct: 201 --KLGDDPSDEELHALRIRGKRLRYTAELAESALDV----KPLLKAAKRFQDVLGEHQDA 254 Query: 156 -MVDSSTLEAM 165 + + + Sbjct: 255 CVAGQRLRDLL 265 >gi|330824901|ref|YP_004388204.1| lytic murein transglycosylase [Alicycliphilus denitrificans K601] gi|329310273|gb|AEB84688.1| lytic murein transglycosylase [Alicycliphilus denitrificans K601] Length = 442 Score = 37.5 bits (86), Expect = 4.2, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 7/75 (9%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP R L + S V+ L+E L G LD VA + V+ +Q GL Sbjct: 375 WP----RDLQPLSRS-DVKTLQELLNARG-LDAGTPDGVA-GPATRAGVRRYQQSLGLPA 427 Query: 154 SGMVDSSTLEAMNVP 168 G L+ + P Sbjct: 428 DGYATRELLQQLQEP 442 >gi|325134221|gb|EGC56870.1| hypothetical protein NMBM13399_1164 [Neisseria meningitidis M13399] gi|325144411|gb|EGC66713.1| hypothetical protein NMBM01240013_1195 [Neisseria meningitidis M01-240013] gi|325206159|gb|ADZ01612.1| conserved hypothetical protein [Neisseria meningitidis M04-240196] Length = 167 Score = 37.5 bits (86), Expect = 4.2, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Query: 126 PSKGLSVAFDAYVE----SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 P FDA V +A ++ Q G+ G++ + +L+A+N + + L+ N Sbjct: 74 PEAVAFQFFDACVNHGYGNAARMLQRAAGVPDDGVIGAVSLKAINSLPENDL-LLRFNAE 132 Query: 182 RI 183 R+ Sbjct: 133 RL 134 >gi|319762822|ref|YP_004126759.1| lytic murein transglycosylase [Alicycliphilus denitrificans BC] gi|317117383|gb|ADU99871.1| lytic murein transglycosylase [Alicycliphilus denitrificans BC] Length = 442 Score = 37.5 bits (86), Expect = 4.2, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 7/75 (9%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP R L + S V+ L+E L G LD VA + V+ +Q GL Sbjct: 375 WP----RDLQPLSRS-DVKTLQELLNARG-LDAGTPDGVA-GPATRAGVRRYQQSLGLPA 427 Query: 154 SGMVDSSTLEAMNVP 168 G L+ + P Sbjct: 428 DGYATRELLQQLQEP 442 >gi|148653769|ref|YP_001280862.1| lytic murein transglycosylase [Psychrobacter sp. PRwf-1] gi|148572853|gb|ABQ94912.1| lytic murein transglycosylase [Psychrobacter sp. PRwf-1] Length = 486 Score = 37.5 bits (86), Expect = 4.2, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 7/67 (10%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP G S + L++ L + G D + + D A++ +Q +GL P Sbjct: 346 WPTDD-----PGLSRKQSRELQQALNLLGY-DIGEVDGIIGDGT-RRAIQQYQTDNGLTP 398 Query: 154 SGMVDSS 160 G Sbjct: 399 DGRAGKK 405 >gi|75677470|ref|NP_001028511.1| matrix metalloproteinase-25 precursor [Mus musculus] gi|123796969|sp|Q3U435|MMP25_MOUSE RecName: Full=Matrix metalloproteinase-25; Short=MMP-25; Flags: Precursor gi|74181785|dbj|BAE32600.1| unnamed protein product [Mus musculus] gi|109730167|gb|AAI12380.1| Matrix metallopeptidase 25 [Mus musculus] Length = 615 Score = 37.5 bits (86), Expect = 4.2, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + ++ A+K+ Q GL +G +D T++ M P Sbjct: 91 LTRYGYLPPADPVHAQMQSLEKLQDAIKVMQRFAGLPETGQMDPMTIKTMRKPRCSLPDV 150 Query: 176 L-QVNLMRIKK 185 L L+R ++ Sbjct: 151 LGAAGLVRRRR 161 >gi|298292273|ref|YP_003694212.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] gi|296928784|gb|ADH89593.1| ErfK/YbiS/YcfS/YnhG family protein [Starkeya novella DSM 506] Length = 336 Score = 37.5 bits (86), Expect = 4.2, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 2/47 (4%) Query: 186 LLEQKMGLRYV--LVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 + YV +V++P NG ST G+ QTP+ Sbjct: 51 WYPDRAPEGYVAIIVSLPDQRCYVYRNGVRIGVSTCSTGKPGHQTPV 97 >gi|148690305|gb|EDL22252.1| matrix metallopeptidase 25 [Mus musculus] Length = 562 Score = 37.5 bits (86), Expect = 4.2, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P+ + ++ A+K+ Q GL +G +D T++ M P Sbjct: 38 LTRYGYLPPADPVHAQMQSLEKLQDAIKVMQRFAGLPETGQMDPMTIKTMRKPRCSLPDV 97 Query: 176 L-QVNLMRIKK 185 L L+R ++ Sbjct: 98 LGAAGLVRRRR 108 >gi|255320738|ref|ZP_05361914.1| membrane-bound lytic murein transglycosylase B [Acinetobacter radioresistens SK82] gi|262380641|ref|ZP_06073794.1| lytic murein transglycosylase B [Acinetobacter radioresistens SH164] gi|255302208|gb|EET81449.1| membrane-bound lytic murein transglycosylase B [Acinetobacter radioresistens SK82] gi|262297589|gb|EEY85505.1| lytic murein transglycosylase B [Acinetobacter radioresistens SH164] Length = 427 Score = 37.5 bits (86), Expect = 4.2, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 12/102 (11%) Query: 69 IISKETIAQTEKAIAFYQDILSRGG-----WPELPIRPLHLGNSSVSVQRLRERLIISGD 123 I S AIA D L G WP G S + +++ L+ G Sbjct: 326 IYSYNAAESYGLAIAHLSDRLQGQGPFLTAWPTDDA-----GTSRAERREIQQFLLKKGY 380 Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 D + D A++ Q R GL+P+G L A+ Sbjct: 381 -DIGAVDGLIGDKT-RQAIRQEQQRLGLNPTGRAGQQILRAL 420 >gi|302346982|ref|YP_003815280.1| putative lipoprotein [Prevotella melaninogenica ATCC 25845] gi|302151113|gb|ADK97374.1| putative lipoprotein [Prevotella melaninogenica ATCC 25845] Length = 514 Score = 37.5 bits (86), Expect = 4.2, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 48/149 (32%), Gaps = 17/149 (11%) Query: 258 LLRQDPQYLKDNNIHMIDEKGKE---VFVEEVDWNSPEPPNFIFRQD--PGKINAMASTK 312 ++ Y +I++ D G + ++ WN E + Q K N Sbjct: 285 KYEKNDYYDMTADINVTDYDGSKYYMWDAQKNYWNGHEWNSANPWQPVLANKSNP----- 339 Query: 313 IEFYSRNNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVV 372 + ++Y H T F S C + N +L ++ P W + + Sbjct: 340 -NYPVSGSSYFHRT---GGFGRED-AMNSSCKNLPNANELGWYVKNGDPRWDDDKLWTAM 394 Query: 373 KTRKTTPVKLATEVPVHFVYISAWSPKDS 401 + L + ++ + ++++ Sbjct: 395 GHLYKGGIWLRNKAYINLI--TSFNSDQG 421 >gi|194205554|ref|XP_001916022.1| PREDICTED: matrix metallopeptidase 21 [Equus caballus] Length = 566 Score = 37.5 bits (86), Expect = 4.2, Method: Composition-based stats. Identities = 32/146 (21%), Positives = 47/146 (32%), Gaps = 37/146 (25%) Query: 43 SYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELPIRPL 102 + + + D P+ + IA A Q LS+ GW E P Sbjct: 15 WLAAPRPAQPETLFHSRDRSDLEPSPLRRAKPIADLPAA----QRFLSKYGWAEAPHES- 69 Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 R PS S A + AV+ FQ + L SG +D++TL Sbjct: 70 ------------RA---------PSPEGSPR--AALAEAVRRFQKVNALPTSGELDAATL 106 Query: 163 EAMNVPVDLRI------RQLQVNLMR 182 P R+ QL ++ R Sbjct: 107 A---TPDPGRLLGEGVSSQLALDEQR 129 >gi|110635323|ref|YP_675531.1| ErfK/YbiS/YcfS/YnhG [Mesorhizobium sp. BNC1] gi|110286307|gb|ABG64366.1| ErfK/YbiS/YcfS/YnhG [Chelativorans sp. BNC1] Length = 490 Score = 37.5 bits (86), Expect = 4.2, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 45/157 (28%), Gaps = 46/157 (29%) Query: 204 SLEAV-ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + E G++ +G D +P ++ R+ NP + Sbjct: 366 QVRLFDEGGRLIGVYPATIGSSDTPSPTGIHQVERVALNP-------------------N 406 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR-NNT 321 Y N +G V + PG + S I Sbjct: 407 YTYDPRKNFK----QGNNDKVLTI--------------PPGPNGPVGSVWIALSKPTYGI 448 Query: 322 YMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 H TPEP + + + GCVR+ N +L + Sbjct: 449 --HGTPEPS---KIGKTYSHGCVRLTNWDAQELAKRV 480 >gi|311280239|ref|YP_003942470.1| Peptidoglycan-binding domain 1 protein [Enterobacter cloacae SCF1] gi|308749434|gb|ADO49186.1| Peptidoglycan-binding domain 1 protein [Enterobacter cloacae SCF1] Length = 517 Score = 37.5 bits (86), Expect = 4.3, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 4/52 (7%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM----NVPVDL 171 L S + A + + FQ + G+ G+ TL + N+ + Sbjct: 450 LGKPPTQSTRWTAELMQRTRDFQSKAGIGVDGIAGEETLIQLMRSVNMTPSV 501 >gi|260683966|ref|YP_003215251.1| putative peptidoglycan-binding/hydrolysing protein [Clostridium difficile CD196] gi|260687626|ref|YP_003218760.1| putative peptidoglycan-binding/hydrolysing protein [Clostridium difficile R20291] gi|260210129|emb|CBA64277.1| putative peptidoglycan-binding/hydrolysing protein [Clostridium difficile CD196] gi|260213643|emb|CBE05474.1| putative peptidoglycan-binding/hydrolysing protein [Clostridium difficile R20291] Length = 175 Score = 37.5 bits (86), Expect = 4.3, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 16/36 (44%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 F +AVK Q R GL G+V ST +A Sbjct: 135 DDDSEFGPATYNAVKSLQGRLGLTRDGIVGRSTWDA 170 >gi|254510501|ref|ZP_05122568.1| peptidoglycan binding domain protein [Rhodobacteraceae bacterium KLH11] gi|221534212|gb|EEE37200.1| peptidoglycan binding domain protein [Rhodobacteraceae bacterium KLH11] Length = 430 Score = 37.5 bits (86), Expect = 4.3, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 13/68 (19%) Query: 91 RGGWPELPIRPLHLGN---SSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQM 147 + GWP G+ S + L+ RL +G +KG+ +AV+ FQ+ Sbjct: 362 QTGWPR--------GDRVLSFAERKELQRRLTQAGF--DTKGIDGRTGPNTINAVRAFQV 411 Query: 148 RHGLDPSG 155 GL P G Sbjct: 412 AQGLVPDG 419 >gi|217979650|ref|YP_002363797.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylocella silvestris BL2] gi|217505026|gb|ACK52435.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylocella silvestris BL2] Length = 255 Score = 37.5 bits (86), Expect = 4.3, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 7/73 (9%) Query: 96 ELPIRP-LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP- 153 + P L + V+ L+ L G +S A+DA + ++ FQ RH Sbjct: 177 PISAGPRLDHNSRGAEVEELQAMLGAYGY---GAPVSGAYDARTQCVIRAFQ-RHFRPAL 232 Query: 154 -SGMVDSSTLEAM 165 G+ D ST+ + Sbjct: 233 VDGIADFSTVATL 245 >gi|149377324|ref|ZP_01895070.1| Peptidoglycan-binding LysM [Marinobacter algicola DG893] gi|149358421|gb|EDM46897.1| Peptidoglycan-binding LysM [Marinobacter algicola DG893] Length = 703 Score = 37.5 bits (86), Expect = 4.3, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 20/95 (21%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRY 195 V+ A++ FQ + TL+ MN + QL NL R+ + + + R Sbjct: 620 GAVKKAMESFQGWRDFE-------ETLKRMNSDGQAKTEQLDRNLERLFEFVGKSKPERN 672 Query: 196 VLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTPI 230 + + + I GR ++ P Sbjct: 673 LFI-------------RQLKNRKAIAGRPVQRDPF 694 >gi|52549472|gb|AAU83321.1| hypothetical protein GZ27E6_43 [uncultured archaeon GZfos27E6] Length = 585 Score = 37.5 bits (86), Expect = 4.3, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 SV +R + G + S F + + ++Q++ GL+ G + TL+ + Sbjct: 270 SVDFVRRIESLFGFSHSKESESGKFSKDLVRVLAIYQLKEGLEADGELGDETLKKL 325 >gi|225848549|ref|YP_002728712.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225643366|gb|ACN98416.1| ErfK/YbiS/YcfS/YnhG family protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 249 Score = 37.5 bits (86), Expect = 4.3, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 183 IKKLLEQKMGLRYVLVNIPAASLEA---VENGKVGLRSTVIVGRVDRQTPILHSRINRIM 239 +KK L + L V ++ L +E K + V +G D TP +I Sbjct: 102 LKKQLPEDFKLNTVYISTQDHRLYYPIELEGKKYVITFPVGLGGEDFPTPKGEFKITERR 161 Query: 240 FNPYWVIPRS 249 NP WV+P S Sbjct: 162 VNPDWVVPPS 171 >gi|188582710|ref|YP_001926155.1| lytic murein transglycosylase [Methylobacterium populi BJ001] gi|179346208|gb|ACB81620.1| lytic murein transglycosylase [Methylobacterium populi BJ001] Length = 400 Score = 37.5 bits (86), Expect = 4.3, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++RL+ L G + + AV+ +Q+R GL G + LE + Sbjct: 338 GPGLKRLQAGLAAQGLYAGEQDGRAG--PKLREAVRQYQIREGLPADGYARPALLERL 393 >gi|52550439|gb|AAU84288.1| hypothetical protein GZ9D1_1 [uncultured archaeon GZfos9D1] Length = 344 Score = 37.5 bits (86), Expect = 4.3, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 SV +R + G + S F + + ++Q++ GL+ G + TL+ + Sbjct: 270 SVDFVRRIESLFGFSHSKESESGKFSKDLVRVLAIYQLKEGLEADGELGDETLKKL 325 >gi|15676901|ref|NP_274047.1| hypothetical protein NMB1012 [Neisseria meningitidis MC58] gi|218768104|ref|YP_002342616.1| hypothetical protein NMA1230 [Neisseria meningitidis Z2491] gi|7226252|gb|AAF41413.1| hypothetical protein NMB1012 [Neisseria meningitidis MC58] gi|121052112|emb|CAM08426.1| hypothetical protein NMA1230 [Neisseria meningitidis Z2491] gi|316985893|gb|EFV64834.1| peptidoglycan domain protein [Neisseria meningitidis H44/76] gi|319410345|emb|CBY90693.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594] gi|325140268|gb|EGC62793.1| hypothetical protein NMBCU385_1107 [Neisseria meningitidis CU385] gi|325200303|gb|ADY95758.1| conserved hypothetical protein [Neisseria meningitidis H44/76] gi|325204085|gb|ADY99538.1| conserved hypothetical protein [Neisseria meningitidis M01-240355] Length = 167 Score = 37.5 bits (86), Expect = 4.3, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Query: 126 PSKGLSVAFDAYVE----SAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNLM 181 P FDA V +A ++ Q G+ G++ + +L+A+N + + L+ N Sbjct: 74 PEAVAFQFFDACVNHGYGNAARMLQRAAGVPDDGVIGAVSLKAINSLPENDL-LLRFNAE 132 Query: 182 RI 183 R+ Sbjct: 133 RL 134 >gi|89069939|ref|ZP_01157272.1| peptidoglycan binding domain protein [Oceanicola granulosus HTCC2516] gi|89044493|gb|EAR50621.1| peptidoglycan binding domain protein [Oceanicola granulosus HTCC2516] Length = 375 Score = 37.5 bits (86), Expect = 4.3, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSG 155 L+ERL +G ++G +AV+ +Q+ HGL P G Sbjct: 324 ELQERLTSAGF--CTRGADGLIGPDTVAAVRAYQLAHGLRPDG 364 >gi|260467449|ref|ZP_05813619.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] gi|259028785|gb|EEW30091.1| ErfK/YbiS/YcfS/YnhG family protein [Mesorhizobium opportunistum WSM2075] Length = 334 Score = 37.5 bits (86), Expect = 4.4, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 8/78 (10%) Query: 297 IFRQDPGKINAMASTKIEFY-SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLD 353 F G N + S I+ H TPEP + + GC+R+ N DL Sbjct: 256 PFTIAAGPNNPVGSVWIDLSIESYGI--HGTPEPG---KIGTTFSHGCIRLTNWDAEDLA 310 Query: 354 VWLLKDTPTWSRYHIEEV 371 + + T + + +V Sbjct: 311 SMVQEGTTVNFKDEMADV 328 >gi|153815857|ref|ZP_01968525.1| hypothetical protein RUMTOR_02102 [Ruminococcus torques ATCC 27756] gi|145846882|gb|EDK23800.1| hypothetical protein RUMTOR_02102 [Ruminococcus torques ATCC 27756] Length = 101 Score = 37.5 bits (86), Expect = 4.4, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V++++E+L +I+G P + + +V+ FQ L + Sbjct: 17 PGYVLEIGSSGEKVRQIQEQLNVIAGAYPAIPKITADGIYGSKTAESVRKFQEVFQLPQT 76 Query: 155 GMVDSSTLE 163 G VD ST Sbjct: 77 GKVDYSTWY 85 >gi|130486970|ref|NP_001076262.1| matrix metalloproteinase-14 precursor [Oryctolagus cuniculus] gi|3041677|sp|Q95220|MMP14_RABIT RecName: Full=Matrix metalloproteinase-14; Short=MMP-14; AltName: Full=Membrane-type matrix metalloproteinase 1; Short=MT-MMP 1; Short=MTMMP1; AltName: Full=Membrane-type-1 matrix metalloproteinase; Short=MT1-MMP; Short=MT1MMP; Flags: Precursor gi|1805295|gb|AAB41500.1| membrane type 1 metalloproteinase [Oryctolagus cuniculus] Length = 582 Score = 37.5 bits (86), Expect = 4.4, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLRVTGKADTDTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|148258177|ref|YP_001242762.1| hypothetical protein BBta_6969 [Bradyrhizobium sp. BTAi1] gi|146410350|gb|ABQ38856.1| hypothetical protein BBta_6969 [Bradyrhizobium sp. BTAi1] Length = 219 Score = 37.5 bits (86), Expect = 4.4, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 6/62 (9%) Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 + R G N + + I Y +++ Y +H T +P +SGC+R+ Sbjct: 124 QARLGPYPKRVPGGPANPLGARAIYLYEGNKDTLYRIHGTNQPEYIGQ---AISSGCIRM 180 Query: 347 RN 348 N Sbjct: 181 TN 182 >gi|262402951|ref|ZP_06079511.1| secretion activator protein [Vibrio sp. RC586] gi|262350450|gb|EEY99583.1| secretion activator protein [Vibrio sp. RC586] Length = 172 Score = 37.5 bits (86), Expect = 4.4, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%) Query: 132 VAFDAYVE----SAVKLFQMRHGLDPSGMVDSSTLEA 164 FDA V+ AVK+ Q G P G++ TL A Sbjct: 85 QLFDAAVQHGWHRAVKMLQSSVGEKPDGIIGPKTLSA 121 >gi|153812437|ref|ZP_01965105.1| hypothetical protein RUMOBE_02836 [Ruminococcus obeum ATCC 29174] gi|149831599|gb|EDM86686.1| hypothetical protein RUMOBE_02836 [Ruminococcus obeum ATCC 29174] Length = 349 Score = 37.5 bits (86), Expect = 4.5, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L++G + V++L+E+L +I+G P G + +V+ FQ GL + Sbjct: 265 PGYDLNIGATGEKVRQLQEQLNVIAGAYPAIPKVGEDGIYGERTSESVRKFQNVFGLPET 324 Query: 155 GMVDSSTLE 163 G+ D T Sbjct: 325 GITDYPTWY 333 >gi|227903913|ref|ZP_04021718.1| conserved hypothetical protein [Lactobacillus acidophilus ATCC 4796] gi|227868304|gb|EEJ75725.1| conserved hypothetical protein [Lactobacillus acidophilus ATCC 4796] Length = 208 Score = 37.5 bits (86), Expect = 4.5, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 7/55 (12%) Query: 117 RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 RL G ++ +AVK FQ H L +G V+ T + + Sbjct: 3 RLGTWG-------GHNYYNQATYNAVKNFQKNHNLPATGNVNLKTWQKLGFSKSS 50 >gi|13591995|ref|NP_112318.1| matrix metalloproteinase-14 [Rattus norvegicus] gi|146345458|sp|Q10739|MMP14_RAT RecName: Full=Matrix metalloproteinase-14; Short=MMP-14; AltName: Full=Membrane-type matrix metalloproteinase 1; Short=MT-MMP 1; Short=MTMMP1; AltName: Full=Membrane-type-1 matrix metalloproteinase; Short=MT-MMP; Short=MT1-MMP; Short=MT1MMP; Flags: Precursor gi|1001927|emb|CAA62897.1| membrane-type metalloproteinase [Rattus norvegicus] gi|47939003|gb|AAH72509.1| Mmp14 protein [Rattus norvegicus] gi|149063898|gb|EDM14168.1| matrix metallopeptidase 14 (membrane-inserted), isoform CRA_a [Rattus norvegicus] gi|149063899|gb|EDM14169.1| matrix metallopeptidase 14 (membrane-inserted), isoform CRA_a [Rattus norvegicus] Length = 582 Score = 37.5 bits (86), Expect = 4.5, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G DS T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLQVTGKADSDTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGTEIKANVRRKR 111 >gi|297850892|ref|XP_002893327.1| hypothetical protein ARALYDRAFT_889959 [Arabidopsis lyrata subsp. lyrata] gi|297339169|gb|EFH69586.1| hypothetical protein ARALYDRAFT_889959 [Arabidopsis lyrata subsp. lyrata] Length = 387 Score = 37.5 bits (86), Expect = 4.6, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSK---GLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 H G + +L++ G + + + FD +++AV+++Q L+ +G++D Sbjct: 53 HAGKKYDGLYKLKQYFQHFGYIPETDLSGNFTDDFDDILKNAVEMYQRNFQLNVTGVLDE 112 Query: 160 STLEAMNVP 168 TL+ + +P Sbjct: 113 LTLKHVVIP 121 >gi|297580086|ref|ZP_06942013.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297535732|gb|EFH74566.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 172 Score = 37.5 bits (86), Expect = 4.6, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%) Query: 132 VAFDAYVE----SAVKLFQMRHGLDPSGMVDSSTLEA 164 FDA V+ AVK+ Q G P G++ TL A Sbjct: 85 QLFDAAVQHGWHRAVKMLQSSVGEKPDGIIGPKTLSA 121 >gi|126322083|ref|XP_001368525.1| PREDICTED: similar to metalloproteinase [Monodelphis domestica] Length = 607 Score = 37.5 bits (86), Expect = 4.6, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 47 LQKYGYLPPTDPRMSVLRSAETMQSALAAMQRFYGINMTGKVDRNTIDWMKKPRCGVPDQ 106 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 107 TRGSSKFNIRRKR 119 >gi|13027664|gb|AAG34676.2|AF306662_1 matrix metalloprotease MT1-MMP [Cricetulus griseus] Length = 582 Score = 37.5 bits (86), Expect = 4.6, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +AV Q +GL +G D T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAVAAMQRFYGLQVTGKADLDTMKAMKRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGTEIKANVRRKR 111 >gi|291415807|ref|XP_002724141.1| PREDICTED: matrix metalloproteinase 17, partial [Oryctolagus cuniculus] Length = 541 Score = 37.5 bits (86), Expect = 4.6, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 21/114 (18%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP------- 168 L G L P+ + + A+ Q GL+ +G++D +TL M P Sbjct: 3 LSRFGYLPPADSTTGQLQTQEELSKAITAMQQFGGLETTGILDEATLALMKTPRCSLPDL 62 Query: 169 ---VDLRIRQLQ--------VNL-MRIKKLLEQKMGLRYVLVNIPAASLEAVEN 210 R R+ NL R++ R + + +L+ + Sbjct: 63 PPVAQARRRRQAPAPTKWNKRNLSWRVRTFPRDSPLGRDTVRALMYYTLKVWSD 116 >gi|805013|emb|CAA58521.1| MT-MMP [Rattus norvegicus] Length = 582 Score = 37.5 bits (86), Expect = 4.6, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G DS T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAIQRFYGLQVTGKADSDTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGTEIKANVRRKR 111 >gi|328906347|gb|EGG26122.1| YkuG protein [Propionibacterium sp. P08] Length = 792 Score = 37.5 bits (86), Expect = 4.7, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 5/82 (6%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA-----FDAYVESAVKLFQMRH 149 +L L G+S V V+ L + +G + +G+ FD + S ++ FQ Sbjct: 216 QQLAAHSLKPGDSGVLVELLSAACVFNGAVPSGEGMVHTVFKHEFDDKLASYIRAFQAFS 275 Query: 150 GLDPSGMVDSSTLEAMNVPVDL 171 L + VD +T + V Sbjct: 276 LLPVTNRVDYATWCQLLVSTGD 297 >gi|313836153|gb|EFS73867.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2] gi|314927591|gb|EFS91422.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1] gi|314971413|gb|EFT15511.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3] Length = 792 Score = 37.5 bits (86), Expect = 4.7, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 5/82 (6%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVA-----FDAYVESAVKLFQMRH 149 +L L G+S V V+ L + +G + +G+ FD + S ++ FQ Sbjct: 216 QQLAAHSLKPGDSGVLVELLSAACVFNGAVPSGEGMVHTVFKHEFDDKLASYIRAFQAFS 275 Query: 150 GLDPSGMVDSSTLEAMNVPVDL 171 L + VD +T + V Sbjct: 276 LLPVTNRVDYATWCQLLVSTGD 297 >gi|297519285|ref|ZP_06937671.1| hypothetical protein EcolOP_16715 [Escherichia coli OP50] Length = 170 Score = 37.5 bits (86), Expect = 4.7, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 4/56 (7%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRNIIDLDVW 355 G N + + N Y +H T P ++V +SGC+R+ ++ Sbjct: 5 PAGPNNPLGRYALRLAHGNGEYLIHGTSAP---DSVGLRVSSGCIRMNAPDIKALF 57 >gi|115467320|ref|NP_001057259.1| Os06g0239100 [Oryza sativa Japonica Group] gi|51535159|dbj|BAD37871.1| putative metalloproteinase [Oryza sativa Japonica Group] gi|51535823|dbj|BAD37908.1| putative metalloproteinase [Oryza sativa Japonica Group] gi|113595299|dbj|BAF19173.1| Os06g0239100 [Oryza sativa Japonica Group] gi|125596648|gb|EAZ36428.1| hypothetical protein OsJ_20758 [Oryza sativa Japonica Group] Length = 371 Score = 37.5 bits (86), Expect = 4.7, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGL------SVAFDAYVESAVKLFQMRHGLDPSGM 156 H G+ + +L++ L G L + FDA +E A+K++Q GLD +G Sbjct: 54 HFGDERQGLGKLKDYLWHFGYLSYPSSSSLSPSFNDLFDADMELAIKMYQGNFGLDVTGD 113 Query: 157 VDSSTLEAM 165 +D++T+ M Sbjct: 114 LDAATVSQM 122 >gi|310816790|ref|YP_003964754.1| peptidoglycan-binding domain 1 [Ketogulonicigenium vulgare Y25] gi|308755525|gb|ADO43454.1| peptidoglycan-binding domain 1 [Ketogulonicigenium vulgare Y25] Length = 560 Score = 37.5 bits (86), Expect = 4.7, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 +RL G + FD +A++ +Q GL +G +D L + Sbjct: 502 DRLNALGF--NPGTVDGVFDDETRAALRRYQEARGLPVTGYLDQQVLVRL 549 >gi|291444959|ref|ZP_06584349.1| membrane protein [Streptomyces roseosporus NRRL 15998] gi|291347906|gb|EFE74810.1| membrane protein [Streptomyces roseosporus NRRL 15998] Length = 377 Score = 37.5 bits (86), Expect = 4.7, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 4/68 (5%) Query: 102 LHLGNSSVSVQRLRERLIISGD----LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 G S+ V RL ++L+ G + L D A + Q G G Sbjct: 308 FKPGQSNSHVDRLGKQLVKKGYGKHYVSGPSPLWTEADRRNVEAFQRAQGWRGGAADGYP 367 Query: 158 DSSTLEAM 165 T + Sbjct: 368 GPETWRRL 375 >gi|71908465|ref|YP_286052.1| hypothetical protein Daro_2852 [Dechloromonas aromatica RCB] gi|71848086|gb|AAZ47582.1| hypothetical protein Daro_2852 [Dechloromonas aromatica RCB] Length = 335 Score = 37.5 bits (86), Expect = 4.7, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 15/69 (21%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGM 156 L +R L LG S V F + +K FQ GL +G+ Sbjct: 280 LDVRLLQLGMSGRGVAI---------------KADGIFGQTSVNLLKRFQASQGLPANGI 324 Query: 157 VDSSTLEAM 165 L + Sbjct: 325 ATPQQLSEL 333 >gi|302551254|ref|ZP_07303596.1| predicted protein [Streptomyces viridochromogenes DSM 40736] gi|302468872|gb|EFL31965.1| predicted protein [Streptomyces viridochromogenes DSM 40736] Length = 606 Score = 37.5 bits (86), Expect = 4.8, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 16/102 (15%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 G V+ ++ L G + F V FQ+ GL P+G+V+ T +A Sbjct: 434 GEHDACVKEVQRLLHTKG---ADIDVDGDFGPQTLRRVTAFQVLAGLQPNGVVEEPTKKA 490 Query: 165 MNVP-------VDLRIRQLQVNLMRIKKLLEQKMGLRYVLVN 199 + ++RQ R++++ + + + Sbjct: 491 LYTSRVRMTVWPQEKVRQ------RVREVFPEAPDKAVAIAD 526 >gi|293189660|ref|ZP_06608377.1| putative peptidoglycan binding domain protein [Actinomyces odontolyticus F0309] gi|292821398|gb|EFF80340.1| putative peptidoglycan binding domain protein [Actinomyces odontolyticus F0309] Length = 344 Score = 37.5 bits (86), Expect = 4.8, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 5/80 (6%) Query: 100 RPLHLGNSS-VSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 R G S V +L L G + + + FD +A+K +Q L SG + Sbjct: 98 RAFEEGMSDGEDVTQLETALSELGYFEATP--NAHFDWNTIAAIKRWQKALSLPQSGSLP 155 Query: 159 SSTLEAMNVPVDLRIRQLQV 178 T+ + P DLRI L+ Sbjct: 156 LGTV--LFAPEDLRIGALKA 173 >gi|95108222|emb|CAD18391.2| putative membrane-bound lytic murein transglycosylase b protein [Ralstonia solanacearum GMI1000] Length = 427 Score = 37.5 bits (86), Expect = 4.8, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 N++ ++RL++RL G DP + D ++A++ +Q L G S L + Sbjct: 368 NNATDIKRLQQRLADKGY-DPGTIDGLIGDRT-QTAIRAYQKDQHLPQDGYASRSLLARL 425 >gi|327291129|ref|XP_003230274.1| PREDICTED: matrix metalloproteinase-15-like, partial [Anolis carolinensis] Length = 404 Score = 37.5 bits (86), Expect = 4.8, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L PS + + +A+ Q +G+ +G++D T M P D Sbjct: 49 LRFYGYLPPSSPQMSTLRSAQTLSAAISEMQGFYGIPVTGLLDHETAAWMKRPRCGVPDK 108 Query: 172 RIRQLQVNLMRIK 184 ++ N+ R + Sbjct: 109 IGAGVKANMRRKR 121 >gi|125554704|gb|EAZ00310.1| hypothetical protein OsI_22327 [Oryza sativa Indica Group] Length = 371 Score = 37.5 bits (86), Expect = 4.8, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGL------SVAFDAYVESAVKLFQMRHGLDPSGM 156 H G+ + +L++ L G L + FDA +E A+K++Q GLD +G Sbjct: 54 HFGDERQGLGKLKDYLWHFGYLSYPSSSSLSPSFNDLFDADMELAIKMYQGNFGLDVTGD 113 Query: 157 VDSSTLEAM 165 +D++T+ M Sbjct: 114 LDAATVSQM 122 >gi|153800512|ref|ZP_01955098.1| conserved hypothetical protein [Vibrio cholerae MZO-3] gi|124123956|gb|EAY42699.1| conserved hypothetical protein [Vibrio cholerae MZO-3] Length = 172 Score = 37.5 bits (86), Expect = 4.8, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%) Query: 132 VAFDAYVE----SAVKLFQMRHGLDPSGMVDSSTLEA 164 FDA V+ AVK+ Q G P G++ TL A Sbjct: 85 QLFDAAVQHGWHRAVKMLQSSVGEKPDGIIGPKTLSA 121 >gi|319404611|emb|CBI78217.1| peptidoglycan-binding protein [Bartonella rochalimae ATCC BAA-1498] Length = 350 Score = 37.1 bits (85), Expect = 4.8, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ RL GD + + + A+K FQ+RHGL+ +G TL + Sbjct: 297 ELQSRLAKLGDYEGEIDGKIGIASK--KAIKAFQLRHGLEGNGYPSYETLSHI 347 >gi|255657666|ref|ZP_05403075.1| hypothetical protein CdifQCD-2_18693 [Clostridium difficile QCD-23m63] gi|296450189|ref|ZP_06891950.1| probable peptidoglycan-binding/hydrolysing protein [Clostridium difficile NAP08] gi|296878570|ref|ZP_06902575.1| probable peptidoglycan-binding/hydrolyzing protein [Clostridium difficile NAP07] gi|296260952|gb|EFH07786.1| probable peptidoglycan-binding/hydrolysing protein [Clostridium difficile NAP08] gi|296430377|gb|EFH16219.1| probable peptidoglycan-binding/hydrolyzing protein [Clostridium difficile NAP07] Length = 195 Score = 37.1 bits (85), Expect = 4.8, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 16/36 (44%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 F +AVK Q R GL G+V ST +A Sbjct: 155 KDDSEFGPATYNAVKSLQGRLGLTRDGIVGRSTWDA 190 >gi|293400970|ref|ZP_06645115.1| penicillin-resistant DD-carboxypeptidase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305996|gb|EFE47240.1| penicillin-resistant DD-carboxypeptidase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 168 Score = 37.1 bits (85), Expect = 4.9, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 14/85 (16%) Query: 102 LHLGNSSVSVQRLRERLIISG---DLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVD 158 + G+ + V +L+ L + + F E+AV+ +Q GL G+++ Sbjct: 7 IKRGDLGIGVNKLQAYLNMMQQRNLISTVNKQDGVFGPLTETAVREWQRYAGLPIDGVIN 66 Query: 159 SSTLEAM-----------NVPVDLR 172 +T ++ N+PV R Sbjct: 67 YNTWNSLVDKLRELGVVTNIPVANR 91 Score = 36.4 bits (83), Expect = 9.4, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 19/37 (51%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + +AV+ +Q + L+ G++ S T +++ Sbjct: 125 PVDGIYGPRTVAAVQQYQYLYDLNVDGVIGSMTWDSI 161 >gi|260431451|ref|ZP_05785422.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415279|gb|EEX08538.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 188 Score = 37.1 bits (85), Expect = 4.9, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 6/55 (10%) Query: 298 FRQDPGKINAMA-STKIEFYSRNNTYM--HDTPEPILFNNVVRFETSGCVRVRNI 349 + Q G N + F + +TY H T +P + R ++GC+R+ N Sbjct: 119 YVQPGGGDNPLGARALYLFQNGVDTYFRIHGTTQP---QTIGRAVSNGCIRMLNA 170 >gi|150396530|ref|YP_001326997.1| peptidoglycan binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150028045|gb|ABR60162.1| Peptidoglycan-binding domain 1 protein [Sinorhizobium medicae WSM419] Length = 307 Score = 37.1 bits (85), Expect = 4.9, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 3/59 (5%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMVDSSTLEAM 165 V+ +E L G + + A+ +Q H L+ G++ +TL + Sbjct: 182 DALVKEAQEILTSKGFNPGA--IDGWMGEKTRDAIIAYQKAHPHLEADGILGPATLSQL 238 >gi|194678314|ref|XP_609577.4| PREDICTED: matrix metalloproteinase 25 [Bos taurus] gi|297490016|ref|XP_002697915.1| PREDICTED: matrix metalloproteinase 25 preproprotein-like [Bos taurus] gi|296473539|gb|DAA15654.1| matrix metalloproteinase 25 preproprotein-like [Bos taurus] Length = 674 Score = 37.1 bits (85), Expect = 5.0, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 3/71 (4%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P + + A+K+ Q GL +G++D T+ M+ P Sbjct: 149 LTRYGYLPPPHPAQAQLQSPAKLRDAIKVMQRFAGLPETGVLDPLTVATMHKPRCSLPDV 208 Query: 176 L-QVNLMRIKK 185 L L+R ++ Sbjct: 209 LGAAGLVRRRR 219 >gi|114704914|ref|ZP_01437822.1| hypothetical protein FP2506_08256 [Fulvimarina pelagi HTCC2506] gi|114539699|gb|EAU42819.1| hypothetical protein FP2506_08256 [Fulvimarina pelagi HTCC2506] Length = 1293 Score = 37.1 bits (85), Expect = 5.0, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVE-SAVKLFQMRHGLDPSGMVDSSTLEAM 165 +R I G+L G + +A+K FQ GL +G +D + + A+ Sbjct: 1234 AIRNIQAILGNLGYDAGPPDGVIGDLTRTAIKDFQSDAGLASTGEIDEALIRAL 1287 >gi|93006394|ref|YP_580831.1| ErfK/YbiS/YcfS/YnhG [Psychrobacter cryohalolentis K5] gi|92394072|gb|ABE75347.1| ErfK/YbiS/YcfS/YnhG [Psychrobacter cryohalolentis K5] Length = 391 Score = 37.1 bits (85), Expect = 5.0, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 6/54 (11%) Query: 301 DPGKINAMASTKIEFYSR-NNTYMHDTPEPILFNNVVRFETSGCVRVRNIIDLD 353 PG N + S I H +P+P + R ++GC+R+ N L Sbjct: 329 PPGPNNPVGSVWIGLSKPSYGI--HGSPDP---ARISRQASAGCIRLTNWDALA 377 >gi|220924768|ref|YP_002500070.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylobacterium nodulans ORS 2060] gi|219949375|gb|ACL59767.1| N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD [Methylobacterium nodulans ORS 2060] Length = 249 Score = 37.1 bits (85), Expect = 5.0, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 10/92 (10%) Query: 89 LSRGGW-PELPIRPLH---LGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL 144 G W P PIR G++ ++ L+ + G + ++ FD + + V+ Sbjct: 162 AGVGHWVPPAPIRDGRFFAEGDAGQPIEALQAMFALYGY---DQPVTGTFDVRMRAVVEA 218 Query: 145 FQMRHGLDP--SGMVDSSTLEAMNVPVDLRIR 174 FQ RH G+ D+ST+ + + R Sbjct: 219 FQ-RHFRPARVDGVADASTITTLRDLIAARAA 249 >gi|163815210|ref|ZP_02206587.1| hypothetical protein COPEUT_01368 [Coprococcus eutactus ATCC 27759] gi|158449405|gb|EDP26400.1| hypothetical protein COPEUT_01368 [Coprococcus eutactus ATCC 27759] Length = 410 Score = 37.1 bits (85), Expect = 5.0, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGDLDPSKG---LSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V +L+ +L P+ G + + + AVK FQ L + Sbjct: 326 PGYDLTIGSSGDKVFQLQRQLARIALNYPAIGSIAVDGVYGQHTADAVKNFQQIFNLPAT 385 Query: 155 GMVDSSTLE 163 G+ D T Sbjct: 386 GVTDYKTWY 394 >gi|121592902|ref|YP_984798.1| peptidoglycan-binding domain-containing protein [Acidovorax sp. JS42] gi|120604982|gb|ABM40722.1| Peptidoglycan-binding domain 1 protein [Acidovorax sp. JS42] Length = 580 Score = 37.1 bits (85), Expect = 5.0, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 18/68 (26%) Query: 118 LIISGDLDPSKGLSVAFDAYVESA------------------VKLFQMRHGLDPSGMVDS 159 L SGD+ + + D + +A + FQ+ GL P G Sbjct: 500 LADSGDVTATAAGAAWLDQQLAAAGAGTAAARTATPAARRARIHQFQLGQGLTPDGRAGP 559 Query: 160 STLEAMNV 167 TL +N Sbjct: 560 LTLMLLNR 567 >gi|269957944|ref|YP_003327733.1| peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] gi|269306625|gb|ACZ32175.1| Peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] Length = 363 Score = 37.1 bits (85), Expect = 5.1, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 6/71 (8%) Query: 88 ILSRGGWPELPI-RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQ 146 I + G +P R L G V +L+ L+ +G L F A AV+ +Q Sbjct: 110 IAAVG---TVPAFRDLSQGMKGEDVAQLQRFLVDAGYLKGRADGD--FGAATTVAVRAWQ 164 Query: 147 MRHGLDPSGMV 157 ++ G+V Sbjct: 165 RILDVERDGVV 175 >gi|168213487|ref|ZP_02639112.1| spore cortex-lytic enzyme SleC [Clostridium perfringens CPE str. F4969] gi|940393|dbj|BAA08081.1| spore cortex-lytic enzyme pre-pro-form [Clostridium perfringens] gi|14349151|dbj|BAB60714.1| sleC [Clostridium perfringens] gi|170715068|gb|EDT27250.1| spore cortex-lytic enzyme SleC [Clostridium perfringens CPE str. F4969] Length = 438 Score = 37.1 bits (85), Expect = 5.2, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G S V+ ++E+L L P + + AVK FQ L + Sbjct: 329 PGYTLKTGYSGEPVRVIQEQLNAISRAYPLIPKIAVDGKYGPKTREAVKTFQKIFNLPQT 388 Query: 155 GMVDSSTLE 163 G VD +T Sbjct: 389 GEVDYATWY 397 >gi|18311542|ref|NP_563476.1| spore cortex-lytic enzyme SleC [Clostridium perfringens str. 13] gi|18146226|dbj|BAB82266.1| spore cortex-lytic enzyme [Clostridium perfringens str. 13] Length = 438 Score = 37.1 bits (85), Expect = 5.2, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L G S V+ ++E+L L P + + AVK FQ L + Sbjct: 329 PGYTLKTGYSGEPVRVIQEQLNAISRAYPLIPKIAVDGKYGPKTREAVKTFQKIFNLPQT 388 Query: 155 GMVDSSTLE 163 G VD +T Sbjct: 389 GEVDYATWY 397 >gi|302531832|ref|ZP_07284174.1| hypothetical protein SSMG_08214 [Streptomyces sp. AA4] gi|302440727|gb|EFL12543.1| hypothetical protein SSMG_08214 [Streptomyces sp. AA4] Length = 245 Score = 37.1 bits (85), Expect = 5.2, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 13/36 (36%) Query: 130 LSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + F E AVK FQ G G V T + Sbjct: 208 VDGLFGERTEQAVKDFQRAAGAVVDGKVGPQTWVLL 243 >gi|158300838|ref|XP_320656.4| AGAP011867-PA [Anopheles gambiae str. PEST] gi|157013354|gb|EAA00513.4| AGAP011867-PA [Anopheles gambiae str. PEST] Length = 100 Score = 37.1 bits (85), Expect = 5.2, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L+ G L+ S + +E AV+ Q GL +G VD TL M P Sbjct: 4 LMQFGYLEKSNIETGNLRTIEELEQAVRSLQRFGGLKETGTVDEETLALMQRP 56 >gi|218531228|ref|YP_002422044.1| lytic murein transglycosylase [Methylobacterium chloromethanicum CM4] gi|218523531|gb|ACK84116.1| lytic murein transglycosylase [Methylobacterium chloromethanicum CM4] Length = 413 Score = 37.1 bits (85), Expect = 5.2, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 5/59 (8%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL---EAMNVPV 169 L+ RL G P G +A++ FQ GL P G D++ L A N P Sbjct: 356 LQTRLAALGY--PVGGADGKIGPKTRAAIRAFQEAKGLVPDGYADAALLDRVRAANAPA 412 >gi|307180966|gb|EFN68754.1| E3 ubiquitin-protein ligase Bre1 [Camponotus floridanus] Length = 964 Score = 37.1 bits (85), Expect = 5.3, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 5/91 (5%) Query: 107 SSVSVQRLRERLIISGD-LDPSKGLSVAFDAYVESAV---KLFQMRHGLDPSGMVDSSTL 162 V LR ++ L+ + + + ++ A+ K FQ HG D G +TL Sbjct: 227 KDTLVAELRNQVDDLQYELNKVRARNDKLEHHLGEAIEKLKAFQQIHGTDEKGSNKPNTL 286 Query: 163 EAMNVPVDLRIRQLQVNLMRIKKLLEQKMGL 193 A +V ++ LQ L ++L ++ Sbjct: 287 VASSVS-QTKLEDLQRELEETRELANNRLQE 316 >gi|118100493|ref|XP_417326.2| PREDICTED: similar to MMP24 protein [Gallus gallus] Length = 565 Score = 37.1 bits (85), Expect = 5.3, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L PS A + V+SAV Q +G+ +G++D +TLE M P Sbjct: 5 LKTYGYLLPSDSQMSAAQSGKAVQSAVATMQQFYGIPVTGVLDQTTLEWMKKP 57 >gi|301752966|ref|XP_002912340.1| PREDICTED: matrix metalloproteinase-15-like [Ailuropoda melanoleuca] Length = 648 Score = 37.1 bits (85), Expect = 5.4, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 19/105 (18%) Query: 99 IRPLHLGNSSVSVQR--LRER-----------LIISGDLD-PSKGLSVAFDAY-VESAVK 143 R L G + V + L R L + G L PS+ +S A + SA+ Sbjct: 13 SRKLKPGENKAFVAKQGLNFRPPVPPYWAWNWLRLYGYLPQPSRHMSTMRSAQILASALA 72 Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVP----VDLRIRQLQVNLMRIK 184 Q +G+ +G++D T M P D ++ NL R + Sbjct: 73 EMQRFYGIPVTGVLDEETKAWMKRPRCGVPDQFGVHVKANLRRRR 117 >gi|182420023|ref|ZP_02951257.1| spore cortex-lytic enzyme pre-pro-form [Clostridium butyricum 5521] gi|237669468|ref|ZP_04529448.1| peptidoglycan-binding domain 1 protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376060|gb|EDT73647.1| spore cortex-lytic enzyme pre-pro-form [Clostridium butyricum 5521] gi|237654912|gb|EEP52472.1| peptidoglycan-binding domain 1 protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 441 Score = 37.1 bits (85), Expect = 5.4, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERLIISGD---LDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V+ ++E+L L P + V +VK+FQ L + Sbjct: 330 PGYDLTVGSSGEPVRTIQEQLNRIAQNYPLIPKLAQDGQYTDKVAESVKVFQGVFSLPQT 389 Query: 155 GMVDSSTLE 163 G+VD +T Sbjct: 390 GVVDYATWY 398 >gi|126734056|ref|ZP_01749803.1| Peptidoglycan-binding domain 1 [Roseobacter sp. CCS2] gi|126716922|gb|EBA13786.1| Peptidoglycan-binding domain 1 [Roseobacter sp. CCS2] Length = 489 Score = 37.1 bits (85), Expect = 5.4, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 6/58 (10%) Query: 112 QRLRE----RLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 LR RL G + FD A+ +Q L +G +D +TL + Sbjct: 427 PVLRRLIENRLEQLGY--NPGRVDGRFDNNTRRAIARYQRDGSLTATGYLDQATLARL 482 >gi|281200353|gb|EFA74573.1| hypothetical protein PPL_11541 [Polysphondylium pallidum PN500] Length = 724 Score = 37.1 bits (85), Expect = 5.4, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 L+ G LD S + + + A+K Q H L +G D ST++ Sbjct: 353 LLSIGSLDESADRN-LYTTQTQDAIKKLQSTHNLPDTGEADPSTIK 397 >gi|241202992|ref|YP_002974088.1| peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856882|gb|ACS54549.1| Peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1263 Score = 37.1 bits (85), Expect = 5.4, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 18/30 (60%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 A +A+K FQ G +P G V +T++A+ Sbjct: 1223 AKTVTAIKNFQKSVGQEPDGKVTDATVKAL 1252 >gi|229526575|ref|ZP_04415979.1| secretion activator protein [Vibrio cholerae bv. albensis VL426] gi|229336733|gb|EEO01751.1| secretion activator protein [Vibrio cholerae bv. albensis VL426] Length = 189 Score = 37.1 bits (85), Expect = 5.4, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%) Query: 132 VAFDAYVE----SAVKLFQMRHGLDPSGMVDSSTLEA 164 FDA V+ AVK+ Q G P G++ TL A Sbjct: 102 QLFDAAVQHGWHRAVKMLQSSVGEKPDGIIGPKTLSA 138 >gi|225452578|ref|XP_002280805.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 321 Score = 37.1 bits (85), Expect = 5.4, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 8/68 (11%) Query: 106 NSSVSVQRLRERLIISGDLDPS--------KGLSVAFDAYVESAVKLFQMRHGLDPSGMV 157 + + +L++ L G L + FD +ESA+K +Q + L +G + Sbjct: 56 DKVKGIHKLKKYLEQFGYLSYNSHSKNQIRTDDDDYFDDLLESAIKSYQTNYHLKATGKL 115 Query: 158 DSSTLEAM 165 DS T+ M Sbjct: 116 DSETVSEM 123 >gi|300797815|ref|NP_001179551.1| matrix metalloproteinase-16 [Bos taurus] gi|297482541|ref|XP_002692871.1| PREDICTED: matrix metallopeptidase 16 (membrane-inserted) [Bos taurus] gi|296480445|gb|DAA22560.1| matrix metallopeptidase 16 (membrane-inserted) [Bos taurus] Length = 607 Score = 37.1 bits (85), Expect = 5.4, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L PS ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 47 LQKYGYLPPSDPRMSVLRSAETMQSALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 106 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 107 TRGSSKFNIRRKR 119 >gi|83859898|ref|ZP_00953418.1| membrane-bound lytic murein transglycosylase, putative [Oceanicaulis alexandrii HTCC2633] gi|83852257|gb|EAP90111.1| membrane-bound lytic murein transglycosylase, putative [Oceanicaulis alexandrii HTCC2633] Length = 402 Score = 37.1 bits (85), Expect = 5.4, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Query: 92 GGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 G WP+ P+ + L++ L G ++G+ F A +A+K FQ +GL Sbjct: 331 GDWPQ-DNPPITR----SQARELQQTLTDLG--HDTRGVDGIFGANSRAALKSFQAANGL 383 Query: 152 DPSGMVDS 159 P G Sbjct: 384 TPDGYAGR 391 >gi|116623987|ref|YP_826143.1| hypothetical protein Acid_4899 [Candidatus Solibacter usitatus Ellin6076] gi|116227149|gb|ABJ85858.1| hypothetical protein Acid_4899 [Candidatus Solibacter usitatus Ellin6076] Length = 238 Score = 37.1 bits (85), Expect = 5.4, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 6/71 (8%) Query: 184 KKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP------ILHSRINR 237 +++ E + ++V++ A A E+G++ V G QTP H+R+ Sbjct: 79 REVPELSDRNKALIVDLAAQVFGAYESGRLVRWGPVSTGDRRHQTPSGTYHLNWHARVRV 138 Query: 238 IMFNPYWVIPR 248 NP W++P Sbjct: 139 SSENPTWIMPW 149 >gi|196233221|ref|ZP_03132067.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] gi|196222692|gb|EDY17216.1| ErfK/YbiS/YcfS/YnhG family protein [Chthoniobacter flavus Ellin428] Length = 121 Score = 37.1 bits (85), Expect = 5.5, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 20/36 (55%) Query: 194 RYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + V+V+ +L A + +V L + V G+ D+ TP Sbjct: 2 KRVVVDKTTQTLRAFDGDRVVLETRVSTGKWDKSTP 37 >gi|238497486|ref|XP_002379978.1| matrix metalloproteinase, putative [Aspergillus flavus NRRL3357] gi|220693252|gb|EED49597.1| matrix metalloproteinase, putative [Aspergillus flavus NRRL3357] Length = 274 Score = 37.1 bits (85), Expect = 5.5, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%) Query: 112 QRLRERLIISGDLDPSKGLSVAFDAYVE-SAVKLFQMRHGLD-PSGMVDSSTLEAM 165 +++R L G LD SK F + +A++ FQ +GL +G + T +AM Sbjct: 21 KKIRAYLQSLGYLDISKSPDGGFSKAEDYAAIRKFQHFYGLKDVTGSYNEKTRQAM 76 >gi|116250359|ref|YP_766197.1| peptidoglycan binding protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255007|emb|CAK06081.1| putative peptidoglycan binding protein [Rhizobium leguminosarum bv. viciae 3841] Length = 1267 Score = 37.1 bits (85), Expect = 5.5, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 18/30 (60%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 A +A+K FQ G +P G V +T++A+ Sbjct: 1227 AKTVTAIKNFQKSVGQEPDGKVTDATVKAL 1256 >gi|108757031|ref|YP_634502.1| hypothetical protein MXAN_6377 [Myxococcus xanthus DK 1622] gi|108460911|gb|ABF86096.1| hypothetical protein MXAN_6377 [Myxococcus xanthus DK 1622] Length = 352 Score = 37.1 bits (85), Expect = 5.5, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 102 LHLGNSSV--SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L LG+ + L++RL G + S A++ Q+ +GL P+G +D Sbjct: 282 LELGHVDPLGTFPGLQDRLANLGYFSCCEQDSEHH-PVTRQALERLQLAYGLKPTGKLDG 340 Query: 160 STLEAM 165 ++ E + Sbjct: 341 ASRELL 346 >gi|416552|emb|CAA46638.1| hatching enzyme [Paracentrotus lividus] Length = 587 Score = 37.1 bits (85), Expect = 5.6, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G +V+ L+ L G P A + SA+ FQ G++ +G++D+ T Sbjct: 93 EEGVHESNVEILKAHLEKFGYTPPGSTFGEA-NLNYTSAILDFQEHGGINQTGILDADTA 151 Query: 163 EAMNVP 168 E ++ P Sbjct: 152 ELLSTP 157 >gi|1658112|gb|AAD13803.1| membane-type 1 metalloproteinase precursor [Oryctolagus cuniculus] Length = 572 Score = 37.1 bits (85), Expect = 5.6, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + + +A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPQSLSAAIAAMQRFYGLRVTGKADTDTMKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|88810999|ref|ZP_01126255.1| hypothetical protein NB231_09363 [Nitrococcus mobilis Nb-231] gi|88791538|gb|EAR22649.1| hypothetical protein NB231_09363 [Nitrococcus mobilis Nb-231] Length = 362 Score = 37.1 bits (85), Expect = 5.6, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 60/169 (35%), Gaps = 19/169 (11%) Query: 39 IINESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSRGGWPELP 98 +I+E + + + L +D G+ ++ + A + + + R E+ Sbjct: 31 LISELFARTLAQQVAQILTALDGGVVLELGAGTGHMAADLLSELERLEHLPERYLILEVS 90 Query: 99 IRPLHLGNS---SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESA--VKLFQMRHGLDP 153 L + + +V +LR R+ L + V V A VK FQ ++ Sbjct: 91 A-ALRQEQAQTIARTVPKLRSRVEWLDRLPETPLRGVILANEVIDALPVKRFQ----INS 145 Query: 154 SGM------VDS-STLEAMNVPVDLRIRQLQVNLMRI--KKLLEQKMGL 193 +G+ + +TL P D ++ N+ ++L + Sbjct: 146 NGVQEQVVTLGEDATLTWALAPADPKLDTAVANIEAELGRRLPPDYVSE 194 >gi|222106794|ref|YP_002547585.1| hypothetical protein Avi_5811 [Agrobacterium vitis S4] gi|221737973|gb|ACM38869.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 223 Score = 37.1 bits (85), Expect = 5.6, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 6/56 (10%) Query: 296 FIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 Q+ G N + + + Y +R+ + +H T +P ++ +SGC+R+ N Sbjct: 127 LPVVQEGGPDNPLGARAMYLYKGNRDTIFRIHGTNQPW---SIGLNLSSGCIRMNN 179 >gi|222109682|ref|YP_002551946.1| peptidoglycan-binding domain 1 protein [Acidovorax ebreus TPSY] gi|221729126|gb|ACM31946.1| Peptidoglycan-binding domain 1 protein [Acidovorax ebreus TPSY] Length = 577 Score = 37.1 bits (85), Expect = 5.6, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 18/68 (26%) Query: 118 LIISGDLDPSKGLSVAFDAYVESA------------------VKLFQMRHGLDPSGMVDS 159 L SGD+ + + D + +A + FQ+ GL P G Sbjct: 497 LADSGDVTATAAGAAWLDQQLAAAGAGAAAARTATPAARRARIHQFQLGQGLTPDGRAGP 556 Query: 160 STLEAMNV 167 TL +N Sbjct: 557 LTLMLLNR 564 >gi|4191265|emb|CAA09055.1| MT5-MMP protein [Mus musculus] Length = 614 Score = 37.1 bits (85), Expect = 5.6, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 54 LKSYGYLLPYESRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 106 >gi|157786912|ref|NP_001099395.1| matrix metalloproteinase-17 [Rattus norvegicus] gi|149063179|gb|EDM13502.1| matrix metallopeptidase 17 (predicted) [Rattus norvegicus] Length = 587 Score = 37.1 bits (85), Expect = 5.6, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 13/86 (15%) Query: 87 DILSRGG--WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFD--AYVESAV 142 + + GG P L LG L G L P+ + + A+ Sbjct: 31 ALAAHGGCAAPAPRAEDLSLGVEW---------LSKFGYLPPADPATGQLQTQEELSKAI 81 Query: 143 KLFQMRHGLDPSGMVDSSTLEAMNVP 168 Q GL+ +G++D +TL M P Sbjct: 82 TAMQQFGGLETTGILDEATLALMKTP 107 >gi|17549461|ref|NP_522801.1| putative transglycosylase protein [Ralstonia solanacearum GMI1000] Length = 390 Score = 37.1 bits (85), Expect = 5.6, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 N++ ++RL++RL G DP + D ++A++ +Q L G S L + Sbjct: 331 NNATDIKRLQQRLADKGY-DPGTIDGLIGDRT-QTAIRAYQKDQHLPQDGYASRSLLARL 388 >gi|302527360|ref|ZP_07279702.1| predicted protein [Streptomyces sp. AA4] gi|302436255|gb|EFL08071.1| predicted protein [Streptomyces sp. AA4] Length = 246 Score = 37.1 bits (85), Expect = 5.7, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 6/71 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP L G+ + +++ + R+ G G +D +AV Q +G++ Sbjct: 174 WPGL---VYAYGDCAPALRTFQLRMNAFGY--GFSGTGCYYDKT-RTAVLDLQRANGIND 227 Query: 154 SGMVDSSTLEA 164 SG + T +A Sbjct: 228 SGRLGPKTWKA 238 >gi|296534203|ref|ZP_06896690.1| secretion activator protein [Roseomonas cervicalis ATCC 49957] gi|296265475|gb|EFH11613.1| secretion activator protein [Roseomonas cervicalis ATCC 49957] Length = 179 Score = 37.1 bits (85), Expect = 5.7, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 19/125 (15%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVES----AVKLFQMRH 149 +P L I L L + + + + + + D P+ L V FD+ V + AV+ Q+ Sbjct: 48 FPTLDIASLTLDQARAIYRAMYWQPLGADDFPPATAL-VLFDSAVNNGVSRAVRFLQLAV 106 Query: 150 GLDPSGMVDSSTLEAM-----NVPVDL--------RIRQLQVNLMRIKKLLEQKMGLRYV 196 G G++ ++T A N + R++ + R+ +G Sbjct: 107 GSTADGLLGTATRAATRRKLGNGAPEQDVALASEIHARRIDF-MARLSTWPTFGLGWARR 165 Query: 197 LVNIP 201 L ++P Sbjct: 166 LASLP 170 >gi|148674197|gb|EDL06144.1| matrix metallopeptidase 24 [Mus musculus] Length = 570 Score = 37.1 bits (85), Expect = 5.7, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 10 LKSYGYLLPYESRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 62 >gi|254488253|ref|ZP_05101458.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseobacter sp. GAI101] gi|214045122|gb|EEB85760.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Roseobacter sp. GAI101] Length = 183 Score = 37.1 bits (85), Expect = 5.8, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 6/50 (12%) Query: 300 QDPGKINAMA-STKIEFYSRNNTYM--HDTPEPILFNNVVRFETSGCVRV 346 Q G N + F + +TY H T +P ++ R ++GC+R+ Sbjct: 116 QPGGPDNPLGARALYLFQNGRDTYFRIHGTTQPS---SIGRSVSNGCIRM 162 >gi|115495469|ref|NP_034938.3| matrix metalloproteinase-24 [Mus musculus] gi|123236166|emb|CAM22837.1| matrix metallopeptidase 24 [Mus musculus] gi|162317834|gb|AAI56392.1| Matrix metallopeptidase 24 [synthetic construct] Length = 618 Score = 37.1 bits (85), Expect = 5.8, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 58 LKSYGYLLPYESRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 110 >gi|33597706|ref|NP_885349.1| putative peptidoglycan-binding protein [Bordetella parapertussis 12822] gi|33602554|ref|NP_890114.1| putative peptidoglycan-binding protein [Bordetella bronchiseptica RB50] gi|33574134|emb|CAE38463.1| putative peptidoglycan-binding protein [Bordetella parapertussis] gi|33576993|emb|CAE34073.1| putative peptidoglycan-binding protein [Bordetella bronchiseptica RB50] Length = 409 Score = 37.1 bits (85), Expect = 5.8, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 17/87 (19%) Query: 110 SVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKL-FQM---RHGL---DPSGMVDSSTL 162 ++ L +RL GDL ++ D + A + Q G P G++ + T Sbjct: 324 AIAHLSDRLR--GDLPFARAWPTD-DPGLSRAERRELQELLLARGFDIGKPDGVIGARTR 380 Query: 163 EAMNV-------PVDLRIRQLQVNLMR 182 +A+ P D R Q + +R Sbjct: 381 QALQTVQGQLGLPADGRAGQKTLKALR 407 >gi|297692149|ref|XP_002823430.1| PREDICTED: LOW QUALITY PROTEIN: matrix metalloproteinase-19-like [Pongo abelii] Length = 507 Score = 37.1 bits (85), Expect = 5.9, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 94 WPELPIRPLHLGNSSVSVQRLRER-----LIISGDLDPSKGLSVAFDAY-VESAVKLFQM 147 W +L + L S V L E L G L S F + A++ FQ Sbjct: 3 WQQLWLGFLLPMTVSGRVLGLAEVAAVDYLSQYGYLQKPLEGSNNFKPEDITEALRAFQE 62 Query: 148 RHGLDPSGMVDSSTLEAMNVP 168 L SG +D +T M P Sbjct: 63 ASELPASGQLDDATRARMRQP 83 >gi|239834506|ref|ZP_04682834.1| lytic murein transglycosylase [Ochrobactrum intermedium LMG 3301] gi|239822569|gb|EEQ94138.1| lytic murein transglycosylase [Ochrobactrum intermedium LMG 3301] Length = 441 Score = 37.1 bits (85), Expect = 5.9, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ L G D + + + +A++ FQ R+GL P G L + Sbjct: 388 ELQTHLKALGYYDGNIDGKIG--STSRAAIEAFQQRNGLQPDGHPSKEVLSVL 438 >gi|225685937|ref|YP_002733909.1| lytic murein transglycosylase [Brucella melitensis ATCC 23457] gi|256261850|ref|ZP_05464382.1| lytic Murein transglycosylase [Brucella melitensis bv. 2 str. 63/9] gi|225642042|gb|ACO01955.1| lytic murein transglycosylase [Brucella melitensis ATCC 23457] gi|263091326|gb|EEZ15862.1| lytic Murein transglycosylase [Brucella melitensis bv. 2 str. 63/9] gi|326410256|gb|ADZ67320.1| lytic murein transglycosylase [Brucella melitensis M28] gi|326553549|gb|ADZ88188.1| lytic murein transglycosylase [Brucella melitensis M5-90] Length = 412 Score = 37.1 bits (85), Expect = 5.9, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ L G D + + +A++ FQ R+GL+P G L + Sbjct: 359 ELQTHLKALGYYDGKIDGKIGATSR--AALEAFQQRNGLEPDGHPSKEVLSVL 409 >gi|122889876|emb|CAM13982.1| matrix metalloproteinase 16 [Mus musculus] gi|123229800|emb|CAM18852.1| matrix metalloproteinase 16 [Mus musculus] Length = 174 Score = 37.1 bits (85), Expect = 5.9, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 18 LQKYGYLPPTDPRMSVLRSAETMQSALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 77 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 78 TRGSSKFNIRRKR 90 >gi|17988368|ref|NP_541001.1| membrane-bound lytic murein transglycosylase B [Brucella melitensis bv. 1 str. 16M] gi|256042995|ref|ZP_05445941.1| membrane-bound lytic murein transglycosylase B [Brucella melitensis bv. 1 str. Rev.1] gi|256112021|ref|ZP_05452966.1| membrane-bound lytic murein transglycosylase B [Brucella melitensis bv. 3 str. Ether] gi|260564228|ref|ZP_05834713.1| lytic murein transglycosylase [Brucella melitensis bv. 1 str. 16M] gi|265989432|ref|ZP_06101989.1| lytic Murein transglycosylase [Brucella melitensis bv. 1 str. Rev.1] gi|265993467|ref|ZP_06106024.1| lytic Murein transglycosylase [Brucella melitensis bv. 3 str. Ether] gi|17984146|gb|AAL53265.1| membrane-bound lytic murein transglycosylase b [Brucella melitensis bv. 1 str. 16M] gi|260151871|gb|EEW86964.1| lytic murein transglycosylase [Brucella melitensis bv. 1 str. 16M] gi|262764337|gb|EEZ10369.1| lytic Murein transglycosylase [Brucella melitensis bv. 3 str. Ether] gi|263000101|gb|EEZ12791.1| lytic Murein transglycosylase [Brucella melitensis bv. 1 str. Rev.1] Length = 412 Score = 37.1 bits (85), Expect = 5.9, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ L G D + + +A++ FQ R+GL+P G L + Sbjct: 359 ELQTHLKALGYYDGKIDGKIGATSR--AALEAFQQRNGLEPDGHPSKEVLSVL 409 >gi|12643347|sp|Q9R0S2|MMP24_MOUSE RecName: Full=Matrix metalloproteinase-24; Short=MMP-24; AltName: Full=Matrix metalloproteinase-21; Short=MMP-21; AltName: Full=Membrane-type matrix metalloproteinase 5; Short=MT-MMP 5; Short=MTMMP5; AltName: Full=Membrane-type-5 matrix metalloproteinase; Short=MT5-MMP; Short=MT5MMP; Contains: RecName: Full=Processed matrix metalloproteinase-24; Flags: Precursor gi|5689227|dbj|BAA82966.1| membrane-type-5 matrix metalloproteinase [Mus musculus] Length = 618 Score = 37.1 bits (85), Expect = 5.9, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 58 LKSYGYLLPYESRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 110 >gi|13929064|ref|NP_113945.1| matrix metalloproteinase-24 [Rattus norvegicus] gi|20138812|sp|Q99PW6|MMP24_RAT RecName: Full=Matrix metalloproteinase-24; Short=MMP-24; AltName: Full=Membrane-type matrix metalloproteinase 5; Short=MT-MMP 5; Short=MTMMP5; AltName: Full=Membrane-type-5 matrix metalloproteinase; Short=MT5-MMP; Short=MT5MMP; Contains: RecName: Full=Processed matrix metalloproteinase-24; Flags: Precursor gi|12862768|dbj|BAB32589.1| membrane-type matrix metalloproteinase 5 [Rattus norvegicus] Length = 618 Score = 37.1 bits (85), Expect = 5.9, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P + + A + ++SAV Q +G+ +G++D +T+E M P Sbjct: 58 LKSYGYLLPYESRASALHSGKALQSAVSTMQQFYGIPVTGVLDQTTIEWMKKP 110 >gi|327269601|ref|XP_003219582.1| PREDICTED: matrix metalloproteinase-16-like [Anolis carolinensis] Length = 610 Score = 37.1 bits (85), Expect = 5.9, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 49 LQKYGYLPPTDPRMSVLRTAETMKSAIAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 108 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 109 TRGNSRFNIRRKR 121 >gi|295836797|ref|ZP_06823730.1| membrane protein [Streptomyces sp. SPB74] gi|295826212|gb|EDY44462.2| membrane protein [Streptomyces sp. SPB74] Length = 454 Score = 37.1 bits (85), Expect = 5.9, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 8/109 (7%) Query: 71 SKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRERLIISGD-----LD 125 S + K +A G +P G S V RL E L+ G + Sbjct: 349 SARYVPYRPKNLAGGSAGPQSGAFP--GAAAFGPGRSGPHVTRLGEMLVARGAGRSYRVG 406 Query: 126 PSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIR 174 P + A D +A + Q G G+ T + +R Sbjct: 407 PGPRWTEA-DRRATAAFQRAQGWRGTGADGIPGPRTWAYLVGGKGEDVR 454 >gi|118591608|ref|ZP_01549005.1| hypothetical protein SIAM614_28472 [Stappia aggregata IAM 12614] gi|118435936|gb|EAV42580.1| hypothetical protein SIAM614_28472 [Stappia aggregata IAM 12614] Length = 226 Score = 37.1 bits (85), Expect = 5.9, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 42/118 (35%) Query: 234 RINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEP 293 +I R+ P W P +I +D E W + P Sbjct: 119 KIGRMQEWPTWTPPPEMIARD----------------------------PESAKWANGMP 150 Query: 294 PNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN 348 G N + + + Y ++++ Y +H T +P +SGC+R+ N Sbjct: 151 G--------GPDNPLGARAMYLYVGNKDSIYRIHGTNQPWTIGLN---ISSGCIRLNN 197 >gi|281346656|gb|EFB22240.1| hypothetical protein PANDA_000051 [Ailuropoda melanoleuca] Length = 617 Score = 37.1 bits (85), Expect = 6.1, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 6/73 (8%) Query: 118 LIISGDLD-PSKGLSVAFDAY-VESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L + G L PS+ +S A + SA+ Q +G+ +G++D T M P D Sbjct: 4 LRLYGYLPQPSRHMSTMRSAQILASALAEMQRFYGIPVTGVLDEETKAWMKRPRCGVPDQ 63 Query: 172 RIRQLQVNLMRIK 184 ++ NL R + Sbjct: 64 FGVHVKANLRRRR 76 >gi|269955325|ref|YP_003325114.1| peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] gi|269304006|gb|ACZ29556.1| Peptidoglycan-binding domain 1 protein [Xylanimonas cellulosilytica DSM 15894] Length = 212 Score = 37.1 bits (85), Expect = 6.1, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 4/73 (5%) Query: 97 LPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAY----VESAVKLFQMRHGLD 152 + I + G++ V+ L+ L + G + +A D + A++ Q H +D Sbjct: 134 VTIGKVRKGDTGPDVRLLQGVLNVHGAGVAAGVGVLALDDDFGDKTDKALRAHQTAHKID 193 Query: 153 PSGMVDSSTLEAM 165 G+ + + + Sbjct: 194 VDGVAGADSWRTL 206 >gi|302875048|ref|YP_003843681.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|307690333|ref|ZP_07632779.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|302577905|gb|ADL51917.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] Length = 449 Score = 37.1 bits (85), Expect = 6.1, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Query: 95 PELPIRPLHLGNSSVSVQRLR---ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGL 151 P L +G+S V+ ++ R+ ++ P ++ +DA ++VK FQ L Sbjct: 330 QSFPGYALRIGSSGQPVRTVQTFLNRIAVNFPAIPKLAVTGVYDAKTATSVKKFQEVFKL 389 Query: 152 DPSGMVDSSTLEAM 165 SG+VD +T A+ Sbjct: 390 SQSGIVDYATWFAI 403 >gi|123090|sp|P22757|HE_PARLI RecName: Full=Hatching enzyme; Short=HE; Short=HEZ; AltName: Full=Envelysin; AltName: Full=Sea-urchin-hatching proteinase; Contains: RecName: Full=Hatching enzyme 18 kDa form; Flags: Precursor gi|9996|emb|CAA37667.1| pre-pro-hatching enzyme [Paracentrotus lividus] Length = 587 Score = 37.1 bits (85), Expect = 6.1, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 G +V+ L+ L G P A + SA+ FQ G++ +G++D+ T Sbjct: 93 EEGVHESNVEILKAHLEKFGYTPPGSTFGEA-NLNYTSAILDFQEHGGINQTGILDADTA 151 Query: 163 EAMNVP 168 E ++ P Sbjct: 152 ELLSTP 157 >gi|332525530|ref|ZP_08401685.1| peptidoglycan-binding domain-containing protein [Rubrivivax benzoatilyticus JA2] gi|332109095|gb|EGJ10018.1| peptidoglycan-binding domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 209 Score = 37.1 bits (85), Expect = 6.2, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 15/42 (35%) Query: 124 LDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L G + A + + FQ GL G+ TL + Sbjct: 155 LQALDGETATDAASLARRIAGFQRARGLAVDGVAGPQTLMLL 196 >gi|119605820|gb|EAW85414.1| hCG15613, isoform CRA_b [Homo sapiens] Length = 235 Score = 37.1 bits (85), Expect = 6.2, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P + + A+K+ Q GL +G +D T+ M P Sbjct: 36 LTRYGYLPPPHPAQAQLQSPEKLRDAIKVMQRFAGLPETGRMDPGTVATMRKPRCSLPDV 95 Query: 176 LQVN-LMRIKK 185 L V L+R ++ Sbjct: 96 LGVAGLVRRRR 106 >gi|331090375|ref|ZP_08339256.1| hypothetical protein HMPREF1025_02839 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401122|gb|EGG80715.1| hypothetical protein HMPREF1025_02839 [Lachnospiraceae bacterium 3_1_46FAA] Length = 438 Score = 37.1 bits (85), Expect = 6.2, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V++++E+L +I+G P + + +V+ FQ L + Sbjct: 354 PGYVLEIGSSGEKVRQIQEQLNVIAGAYPAIPKITADGIYGSKTAESVRKFQEVFQLPQT 413 Query: 155 GMVDSSTLE 163 G VD ST Sbjct: 414 GKVDYSTWY 422 >gi|148378742|ref|YP_001253283.1| phage related N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 3502] gi|153932011|ref|YP_001383128.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 19397] gi|153934498|ref|YP_001386678.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. Hall] gi|148288226|emb|CAL82295.1| putative phage related N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 3502] gi|152928055|gb|ABS33555.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. ATCC 19397] gi|152930412|gb|ABS35911.1| N-acetylmuramoyl-L-alanine amidase [Clostridium botulinum A str. Hall] Length = 234 Score = 37.1 bits (85), Expect = 6.3, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 22/56 (39%) Query: 108 SVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLE 163 +V+ ++ +L G G+ F AVK FQ L G+V +T Sbjct: 174 DGNVKVIQSKLQNIGYSVGKFGVDGYFGDGTLLAVKCFQRDCNLMIDGIVGENTWN 229 >gi|83645431|ref|YP_433866.1| type II secretory pathway ATPase ExeA [Hahella chejuensis KCTC 2396] gi|83633474|gb|ABC29441.1| Type II secretory pathway, component ExeA (predicted ATPase) [Hahella chejuensis KCTC 2396] Length = 600 Score = 37.1 bits (85), Expect = 6.3, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 19/42 (45%) Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMN 166 D L D ++ V+ FQ G+ P G+ + TL +N Sbjct: 543 DEKPSLEPLPDTSLKDRVRWFQQEVGILPDGIPGAITLIMLN 584 >gi|307941473|ref|ZP_07656828.1| peptidoglycan-binding domain 1 protein [Roseibium sp. TrichSKD4] gi|307775081|gb|EFO34287.1| peptidoglycan-binding domain 1 protein [Roseibium sp. TrichSKD4] Length = 1408 Score = 36.7 bits (84), Expect = 6.3, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Query: 116 ERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNV 167 +L G + SAV+ FQ GL +G +D++ ++ +N Sbjct: 1356 TKLNALGFNAGAPDGQTG--PQTRSAVRAFQRSLGLPETGDIDAALIKELNG 1405 >gi|209919789|ref|YP_002293873.1| hypothetical protein ECSE_2598 [Escherichia coli SE11] gi|209913048|dbj|BAG78122.1| conserved hypothetical protein [Escherichia coli SE11] Length = 197 Score = 36.7 bits (84), Expect = 6.3, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 4/36 (11%) Query: 133 AFDAYVESAVKL----FQMRHGLDPSGMVDSSTLEA 164 FDA V+ VK Q G+D G+V +T A Sbjct: 107 VFDAAVQHGVKRAIQILQAAAGVDDDGIVGKNTRAA 142 >gi|119489741|ref|ZP_01622499.1| putative hydrolase [Lyngbya sp. PCC 8106] gi|119454315|gb|EAW35465.1| putative hydrolase [Lyngbya sp. PCC 8106] Length = 435 Score = 36.7 bits (84), Expect = 6.4, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTL 162 +G + VQ L+ L G + F ++A+ FQ GL G+ + T Sbjct: 192 TVGTTGSKVQDLQSLLKNRGF--DPGSIDGIFGNGTKTAILKFQKSKGLAEDGIANLKTW 249 Query: 163 EAM 165 A+ Sbjct: 250 TAL 252 >gi|109127347|ref|XP_001091146.1| PREDICTED: matrix metalloproteinase-25 [Macaca mulatta] Length = 562 Score = 36.7 bits (84), Expect = 6.4, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P + + A+K+ Q GL +G +D T+ M P Sbjct: 36 LTRYGYLPPPNPAQAQLQSPAKLRDAIKVMQRFAGLPETGRMDPETVATMRKPRCSLPDV 95 Query: 176 LQVN-LMRIKK 185 L V L+R ++ Sbjct: 96 LGVAGLVRRRR 106 >gi|110634376|ref|YP_674584.1| lytic murein transglycosylase [Mesorhizobium sp. BNC1] gi|110285360|gb|ABG63419.1| lytic murein transglycosylase [Chelativorans sp. BNC1] Length = 394 Score = 36.7 bits (84), Expect = 6.4, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 93 GWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLD 152 G P R G +++ L+++L G + F+ AV+ Q+R GL Sbjct: 322 GAPAFDARNPEQGLEPENMKILQQKLQALGYHVGEVDGILGFNTR--EAVRQEQLRQGLP 379 Query: 153 PSG 155 G Sbjct: 380 ADG 382 >gi|209547818|ref|YP_002279735.1| peptidoglycan-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533574|gb|ACI53509.1| Peptidoglycan-binding domain 1 protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 1260 Score = 36.7 bits (84), Expect = 6.5, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + +V+ ++ L +G + A +A+K FQ G +P G V +T++A+ Sbjct: 1192 DMKKAVRNIQAILNNNGF--DAGTPDGEMGAKTVTAIKNFQKSIGQEPDGKVTDATVKAL 1249 >gi|159184697|ref|NP_354301.2| hypothetical protein Atu1293 [Agrobacterium tumefaciens str. C58] gi|159139986|gb|AAK87086.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 412 Score = 36.7 bits (84), Expect = 6.5, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 19/43 (44%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 L +LV+ SL ENG++ S V G+ +TP Sbjct: 22 LAADSRSLQILVSKSDQSLSLYENGEIIATSKVSTGKAGHETP 64 >gi|86356208|ref|YP_468100.1| putative hemagglutinin protein [Rhizobium etli CFN 42] gi|86280310|gb|ABC89373.1| putative hemagglutinin protein [Rhizobium etli CFN 42] Length = 1249 Score = 36.7 bits (84), Expect = 6.5, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 17/30 (56%) Query: 136 AYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 A +A+K FQ G P G V +T++A+ Sbjct: 1209 AKTVAAIKSFQKSIGQAPDGKVTDATVKAL 1238 >gi|317502111|ref|ZP_07960292.1| spore cortex-lytic enzyme SleC [Lachnospiraceae bacterium 8_1_57FAA] gi|316896500|gb|EFV18590.1| spore cortex-lytic enzyme SleC [Lachnospiraceae bacterium 8_1_57FAA] Length = 438 Score = 36.7 bits (84), Expect = 6.5, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL-IISGDLD--PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G+S V++++E+L +I+G P + + +V+ FQ L + Sbjct: 354 PGYVLEIGSSGEKVRQIQEQLNVIAGAYPAIPKITADGIYGSKTAESVRKFQEVFQLPQT 413 Query: 155 GMVDSSTLE 163 G VD ST Sbjct: 414 GKVDYSTWY 422 >gi|224077434|ref|XP_002187137.1| PREDICTED: similar to matrix metalloproteinase 24 preproprotein (predicted) [Taeniopygia guttata] Length = 596 Score = 36.7 bits (84), Expect = 6.5, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFDA--YVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L PS + V+SAV Q +G+ +G++D +T+E M P Sbjct: 36 LKTYGYLLPSDSQMSPLQSGKAVQSAVATMQQFYGIPVTGVLDQTTIEWMKKP 88 >gi|284046107|ref|YP_003396447.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] gi|283950328|gb|ADB53072.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] Length = 261 Score = 36.7 bits (84), Expect = 6.6, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 20/77 (25%) Query: 162 LEAMNVPVDLR---------IRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGK 212 + V + R +++ +R + V V++ A A +G+ Sbjct: 108 RLWLRVALPERPNGRSGWIDADAVRLAPVRWR-----------VEVDVDARRAAAFHDGR 156 Query: 213 VGLRSTVIVGRVDRQTP 229 V+VG TP Sbjct: 157 EVRSWRVVVGAPGTVTP 173 >gi|254438235|ref|ZP_05051729.1| lytic murein transglycosylase subfamily, putative [Octadecabacter antarcticus 307] gi|198253681|gb|EDY77995.1| lytic murein transglycosylase subfamily, putative [Octadecabacter antarcticus 307] Length = 398 Score = 36.7 bits (84), Expect = 6.6, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%) Query: 114 LRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L+ RL G + A E+A++ FQ R L +G+ + L A+ Sbjct: 348 LQRRLAARGY--DIGTIDGVVGAKTEAAIRDFQRRQRLAVTGIATADVLVAL 397 >gi|296214500|ref|XP_002753656.1| PREDICTED: matrix metalloproteinase-14 [Callithrix jacchus] Length = 582 Score = 36.7 bits (84), Expect = 6.7, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSK--GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P + A+ Q +GL +G D+ T++AM P D Sbjct: 39 LQQYGYLPPGDLRTHTQRSPKSFSEAIAAMQKFYGLQVTGKADADTIKAMRRPRCGVPDK 98 Query: 172 RIRQLQVNLMRIK 184 +++ N+ R + Sbjct: 99 FGAEIKANVRRKR 111 >gi|332525314|ref|ZP_08401482.1| peptidoglycan-binding domain-containing protein [Rubrivivax benzoatilyticus JA2] gi|332108591|gb|EGJ09815.1| peptidoglycan-binding domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 201 Score = 36.7 bits (84), Expect = 6.8, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 15/35 (42%) Query: 144 LFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQV 178 FQ+ HGL P G TL + + +L + Sbjct: 165 AFQVAHGLQPDGRAGPLTLMQILRADGETVPRLAL 199 >gi|291242301|ref|XP_002741046.1| PREDICTED: matrix metalloproteinase, putative-like [Saccoglossus kowalevskii] Length = 567 Score = 36.7 bits (84), Expect = 6.8, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G +D V D AV FQ GL+ +G D +TL MN P Sbjct: 71 LYHYGYMDIHHNAIVTED-TFTDAVSRFQAFVGLEITGKADEATLAMMNAP 120 >gi|149187605|ref|ZP_01865902.1| phospho-beta-glucosidase B [Vibrio shilonii AK1] gi|148838485|gb|EDL55425.1| phospho-beta-glucosidase B [Vibrio shilonii AK1] Length = 463 Score = 36.7 bits (84), Expect = 6.8, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 7/78 (8%) Query: 139 ESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQVNL-MRIKKLLEQKMGLRYVL 197 AVKL Q + P G + + L A+N P + + K L + R Sbjct: 207 AKAVKLCQK---IVPDGKIGNMLLGALNYPYTCNPDDVIAAMHENNKWLFFGDVQTRGQY 263 Query: 198 VNIPAASLEAVENGKVGL 215 P L ++ L Sbjct: 264 ---PGYMLRYFRENQIEL 278 >gi|229543921|ref|ZP_04432980.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus coagulans 36D1] gi|229325060|gb|EEN90736.1| ErfK/YbiS/YcfS/YnhG family protein [Bacillus coagulans 36D1] Length = 167 Score = 36.7 bits (84), Expect = 6.8, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 54/178 (30%), Gaps = 68/178 (38%) Query: 183 IKKLLEQ---KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP--ILHSRINR 237 + G ++VN L + GKV L + V G+ + TP Sbjct: 13 LSVWPADGHVAPGDPLIIVNKTTNRLAWIRGGKVRLETPVATGKTNDLTPEGFF------ 66 Query: 238 IMFNPYWVIPRSIIQKDMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFI 297 +I K ++P Y + NI Sbjct: 67 -----------TIKVK------AKNPYY-RKKNI-------------------------- 82 Query: 298 FRQDPG--KINAMASTKIEFYSRNN---TY-MHDTPEPILFNNVVRFETSGCVRVRNI 349 PG N + S I F +R Y +H T P ++ R+ ++GC+R+ Sbjct: 83 ----PGGDPRNPLGSRWIGFDARGTDGRIYGLHGTNNP---ASIGRYISNGCIRLPKA 133 >gi|284047124|ref|YP_003397464.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] gi|283951345|gb|ADB54089.1| ErfK/YbiS/YcfS/YnhG family protein [Conexibacter woesei DSM 14684] Length = 273 Score = 36.7 bits (84), Expect = 6.8, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 12/64 (18%) Query: 169 VDLRIRQLQ---VNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVD 225 + R + V L R + L G R L +G + R+ ++VG Sbjct: 129 PNARAGWIAARDVRLSRTRWYLSVSTGRR---------ELRVYSDGTLRRRARLVVGAPA 179 Query: 226 RQTP 229 TP Sbjct: 180 TPTP 183 >gi|226947822|ref|YP_002802913.1| YbfG [Clostridium botulinum A2 str. Kyoto] gi|226840753|gb|ACO83419.1| YbfG [Clostridium botulinum A2 str. Kyoto] Length = 695 Score = 36.7 bits (84), Expect = 6.8, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 6/107 (5%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVS--VQRLRERLIISGDL 124 + S++T KA+ + G W P G++S V L+ L ++G + Sbjct: 167 VYSRDTNRALIKALQVEEGTTPDGIWGPGTQDKCPTIPGSNSNQRYVLLLQYSLYVNG-I 225 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 DP G F + +A+K FQ L G ++ V Sbjct: 226 DP-NGFDGLFGNGLSNAIKEFQSFCALPADGYAGKQVWASLLVSTGD 271 >gi|223985277|ref|ZP_03635358.1| hypothetical protein HOLDEFILI_02664 [Holdemania filiformis DSM 12042] gi|223962761|gb|EEF67192.1| hypothetical protein HOLDEFILI_02664 [Holdemania filiformis DSM 12042] Length = 534 Score = 36.7 bits (84), Expect = 6.8, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 19/41 (46%) Query: 105 GNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLF 145 G V +R R+ G L+ +K + A D + VK+F Sbjct: 430 GGQGPDVSAIRNRVHSEGSLNLTKYNNPALDEALNEGVKVF 470 >gi|206599910|ref|YP_002241715.1| gp30 [Mycobacterium phage Fruitloop] gi|206286998|gb|ACI12344.1| gp30 [Mycobacterium phage Fruitloop] Length = 332 Score = 36.7 bits (84), Expect = 6.8, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 8/72 (11%) Query: 102 LHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH--------GLDP 153 L G+ S +++++ + + + +D + + V Q R+ GL Sbjct: 10 LGPGDRSDEIRKIKAFMRRKFSYAATLADTEFYDEAMAAVVAEMQSRYNTAGQLRDGLYI 69 Query: 154 SGMVDSSTLEAM 165 G+V + T M Sbjct: 70 PGIVGAETKYVM 81 >gi|168177934|ref|ZP_02612598.1| putative peptidoglycan binding domain protein [Clostridium botulinum NCTC 2916] gi|182670965|gb|EDT82939.1| putative peptidoglycan binding domain protein [Clostridium botulinum NCTC 2916] Length = 695 Score = 36.7 bits (84), Expect = 6.8, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 6/107 (5%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIR--PLHLGNSSVS--VQRLRERLIISGDL 124 + S++T KA+ + G W P G++S V L+ L ++G + Sbjct: 167 VYSRDTNRALIKALQVEEGTTPDGIWGPGTQDKCPTIPGSNSNQRYVLLLQYSLYVNG-I 225 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDL 171 DP G F + +A+K FQ L G ++ V Sbjct: 226 DP-NGFDGLFGNGLSNAIKEFQSFCALPADGYAGKQVWASLLVSTGD 271 >gi|29565799|ref|NP_817371.1| gp33 [Mycobacterium phage Che8] gi|29424524|gb|AAN12431.1| gp33 [Mycobacterium phage Che8] Length = 333 Score = 36.7 bits (84), Expect = 6.8, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 17/77 (22%) Query: 102 LHLGNSSVSVQRL----RERLI-ISGDLDPSKGLSVAFDAYVESAVKLFQMRH---GLDP 153 L G+SS ++R+ R++ +GDL + +D + +AV Q R+ GL Sbjct: 10 LGPGDSSEEIRRIKTFMRKKFASYAGDL----ADTPLYDEQMTAAVAEMQARYNAAGLLR 65 Query: 154 S-----GMVDSSTLEAM 165 G+V + T M Sbjct: 66 DGLYIPGIVGAETKYVM 82 >gi|229551613|ref|ZP_04440338.1| ErfK/YbiS/YcfS/YnhG protein [Lactobacillus rhamnosus LMS2-1] gi|229315017|gb|EEN80990.1| ErfK/YbiS/YcfS/YnhG protein [Lactobacillus rhamnosus LMS2-1] Length = 551 Score = 36.7 bits (84), Expect = 6.9, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 22/42 (52%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + +G YV V+ +++GKV + S ++ G+ + TP Sbjct: 422 DGDIGNTYVEVSKEKQHEWYIKDGKVVMDSDIVTGKPGQDTP 463 >gi|209524890|ref|ZP_03273436.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] gi|209494769|gb|EDZ95078.1| Peptidoglycan-binding domain 1 protein [Arthrospira maxima CS-328] Length = 606 Score = 36.7 bits (84), Expect = 7.0, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLR 172 +++ RLI G L+P + F +A + FQ + SG++ S T + + +R Sbjct: 114 QIQTRLIDLGLLEP--PVDGIFGPLSTAAFRRFQELMNISESGILGSETAKKLIETTTIR 171 Query: 173 IRQLQV 178 +++ Sbjct: 172 RENMRL 177 >gi|332800388|ref|YP_004461887.1| peptidoglycan-binding domain 1 protein [Tepidanaerobacter sp. Re1] gi|332698123|gb|AEE92580.1| Peptidoglycan-binding domain 1 protein [Tepidanaerobacter sp. Re1] Length = 413 Score = 36.7 bits (84), Expect = 7.1, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 12/107 (11%) Query: 95 PELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P +PL G+ +Q++ +RL + + + F AV+ FQ + + Sbjct: 12 PLKKQKPLLKGSDVRHLQQVLKRLGVF-----NARIDGVFGYETMQAVREFQRAFHIKQN 66 Query: 155 GMVDSSTLEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIP 201 G+VD E + ++ + + + + Y V IP Sbjct: 67 GIVDDDEFEIL-------KELMRCGINKWRTIQRDYRHSGYSPVPIP 106 >gi|194302980|ref|YP_002014249.1| gp33 [Mycobacterium phage Boomer] gi|194153028|gb|ACF34095.1| gp33 [Mycobacterium phage Boomer] Length = 333 Score = 36.7 bits (84), Expect = 7.2, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 17/77 (22%) Query: 102 LHLGNSSVSVQRLRERLIIS-----GDLDPSKGLSVAFDAYVESAVKLFQMRH------- 149 L LG+SS +++++ + GDL + +D + +AV Q R+ Sbjct: 10 LGLGDSSDEIRKIKAFMRRKFASYAGDL----ADTPLYDEAMTAAVAEMQARYSAAGQLR 65 Query: 150 -GLDPSGMVDSSTLEAM 165 GL G+V + T M Sbjct: 66 AGLYIPGIVGAETKYVM 82 >gi|194037087|ref|XP_001926652.1| PREDICTED: matrix metalloproteinase-16 [Sus scrofa] Length = 607 Score = 36.7 bits (84), Expect = 7.2, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 47 LQKYGYLPPTDPRMSVLRSAETMQSALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 106 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 107 TRGSSKFNIRRKR 119 >gi|73999559|ref|XP_544165.2| PREDICTED: similar to matrix metalloproteinase 16 isoform 1 [Canis familiaris] Length = 595 Score = 36.7 bits (84), Expect = 7.2, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ +++A+ Q +G++ +G VD +T++ M P D Sbjct: 35 LQKYGYLPPTDPRMSVLRSAETMQAALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 94 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 95 TRGSSKFNIRRKR 107 >gi|320528722|ref|ZP_08029874.1| peptidase [Solobacterium moorei F0204] gi|320130932|gb|EFW23510.1| peptidase [Solobacterium moorei F0204] Length = 513 Score = 36.7 bits (84), Expect = 7.2, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 2/48 (4%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L G F + E A++ F+ G+ G++D T + Sbjct: 441 LDYLGY--SVGRTDGYFSSQTEDALRQFETDKGIKADGVLDKETFSTL 486 >gi|194430082|ref|ZP_03062586.1| conserved hypothetical protein [Escherichia coli B171] gi|194411853|gb|EDX28171.1| conserved hypothetical protein [Escherichia coli B171] Length = 186 Score = 36.7 bits (84), Expect = 7.2, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 4/36 (11%) Query: 133 AFDAYVESAVKL----FQMRHGLDPSGMVDSSTLEA 164 FDA V+ VK Q G+D G+V +T A Sbjct: 96 VFDAAVQHGVKRAIQILQAAAGVDDDGIVGKNTRAA 131 >gi|199598795|ref|ZP_03212207.1| hypothetical protein LRH_04909 [Lactobacillus rhamnosus HN001] gi|258509519|ref|YP_003172270.1| ErfK/YbiS/YcfS/YnhG family protein [Lactobacillus rhamnosus GG] gi|199590300|gb|EDY98394.1| hypothetical protein LRH_04909 [Lactobacillus rhamnosus HN001] gi|257149446|emb|CAR88419.1| ErfK/YbiS/YcfS/YnhG family protein [Lactobacillus rhamnosus GG] gi|259650787|dbj|BAI42949.1| conserved hypothetical protein [Lactobacillus rhamnosus GG] Length = 456 Score = 36.7 bits (84), Expect = 7.3, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 22/42 (52%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + +G YV V+ +++GKV + S ++ G+ + TP Sbjct: 327 DGDIGNTYVEVSKEKQHEWYIKDGKVVMDSDIVTGKPGQDTP 368 >gi|149721274|ref|XP_001487888.1| PREDICTED: matrix metallopeptidase 16 (membrane-inserted) [Equus caballus] Length = 607 Score = 36.7 bits (84), Expect = 7.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 47 LQKYGYLPPTDPRMSVLRSAETMQSALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 106 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 107 TRGSSKFNIRRKR 119 >gi|4996355|dbj|BAA78420.1| membrane-type-3 matrix metalloproteinase [Mus musculus] Length = 607 Score = 36.7 bits (84), Expect = 7.3, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 47 LQKYGYLPPTDPRMSVLRSAETMQSALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 106 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 107 TRGSSKFNIRRKR 119 >gi|258540719|ref|YP_003175218.1| ErfK/YbiS/YcfS/YnhG family protein [Lactobacillus rhamnosus Lc 705] gi|257152395|emb|CAR91367.1| ErfK/YbiS/YcfS/YnhG family protein [Lactobacillus rhamnosus Lc 705] Length = 456 Score = 36.7 bits (84), Expect = 7.4, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 22/42 (52%) Query: 188 EQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 + +G YV V+ +++GKV + S ++ G+ + TP Sbjct: 327 DGDIGNTYVEVSKEKQHEWYIKDGKVVMDSDIVTGKPGQDTP 368 >gi|254504281|ref|ZP_05116432.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] gi|222440352|gb|EEE47031.1| Putative peptidoglycan binding domain protein [Labrenzia alexandrii DFL-11] Length = 210 Score = 36.7 bits (84), Expect = 7.4, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 3/68 (4%) Query: 99 IRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRH-GLDPSGMV 157 RP+ V+ +E L G + ++AV +Q +H L G++ Sbjct: 74 ARPVPPSAPDPVVREAQEALTRFGF--DPGVIDGWMGHRTKAAVLAYQRQHPDLVNDGII 131 Query: 158 DSSTLEAM 165 +TL + Sbjct: 132 GPATLVQL 139 >gi|254562448|ref|YP_003069543.1| membrane bound lytic murein transglycosylase B, mltB [Methylobacterium extorquens DM4] gi|254269726|emb|CAX25698.1| putative membrane bound lytic murein transglycosylase B, mltB [Methylobacterium extorquens DM4] Length = 393 Score = 36.7 bits (84), Expect = 7.5, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 7/72 (9%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP R ++RL+ L G + + AV+ +Q+R GL Sbjct: 325 WPNGAARL-----DGPGLKRLQVGLAAKGLYAGEQDGRAG--PKLREAVRQYQIREGLPA 377 Query: 154 SGMVDSSTLEAM 165 G + LE + Sbjct: 378 DGYARPALLERL 389 >gi|149045489|gb|EDL98489.1| matrix metalloproteinase 16, isoform CRA_a [Rattus norvegicus] gi|149045490|gb|EDL98490.1| matrix metalloproteinase 16, isoform CRA_a [Rattus norvegicus] Length = 607 Score = 36.7 bits (84), Expect = 7.5, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 47 LQKYGYLPPTDPRMSVLRSAETMQSALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 106 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 107 TRGSSKFNIRRKR 119 >gi|40254544|ref|NP_062698.2| matrix metalloproteinase-16 precursor [Mus musculus] gi|34785576|gb|AAH57926.1| Matrix metallopeptidase 16 [Mus musculus] gi|122889875|emb|CAM13981.1| matrix metalloproteinase 16 [Mus musculus] gi|123229799|emb|CAM18851.1| matrix metalloproteinase 16 [Mus musculus] gi|148673638|gb|EDL05585.1| matrix metallopeptidase 16, isoform CRA_a [Mus musculus] gi|148673640|gb|EDL05587.1| matrix metallopeptidase 16, isoform CRA_a [Mus musculus] Length = 607 Score = 36.7 bits (84), Expect = 7.5, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 47 LQKYGYLPPTDPRMSVLRSAETMQSALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 106 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 107 TRGSSKFNIRRKR 119 >gi|325292655|ref|YP_004278519.1| hypothetical protein AGROH133_05714 [Agrobacterium sp. H13-3] gi|325060508|gb|ADY64199.1| hypothetical protein AGROH133_05714 [Agrobacterium sp. H13-3] Length = 412 Score = 36.7 bits (84), Expect = 7.5, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 187 LEQKMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 L ++V+ SL ENG++ S V G+ +TP Sbjct: 22 LAADNKSLQIVVSKSDQSLALYENGEIVATSKVSTGKAGHETP 64 >gi|195120101|ref|XP_002004567.1| GI19538 [Drosophila mojavensis] gi|193909635|gb|EDW08502.1| GI19538 [Drosophila mojavensis] Length = 588 Score = 36.7 bits (84), Expect = 7.5, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 22/123 (17%) Query: 118 LIISGDLDPSK---GLSVAFDAYV-ESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----- 168 L G L S S D + SA++ FQ GL+ +G +D TL+ M++P Sbjct: 40 LSQFGYLPASARNPANSGLQDKHTWVSAIEEFQSFAGLNITGELDEETLKLMSLPRCGVR 99 Query: 169 -----VDLRIRQLQVNLMRIK--------KLLEQKMGLRYVLVNIPAASLEAVENGKVGL 215 D R ++ + R + +++ V I A E+ + Sbjct: 100 DRVGTGDSRAKRYALQGSRWRVKNLTYKISKYPKRLKRNDVDAEIARAFAVWSEDTDLTF 159 Query: 216 RST 218 Sbjct: 160 TRK 162 >gi|157110203|ref|XP_001650998.1| hypothetical protein AaeL_AAEL000790 [Aedes aegypti] gi|108883949|gb|EAT48174.1| conserved hypothetical protein [Aedes aegypti] Length = 102 Score = 36.7 bits (84), Expect = 7.5, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAFD--AYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L+ G L S + ++ AV+LFQ LDP+G +D TLE M +P Sbjct: 3 LMEFGYLPKSNIETGNLRTMEQLQEAVRLFQNFANLDPTGKIDQDTLELMRMP 55 >gi|3182966|sp|O35548|MMP16_RAT RecName: Full=Matrix metalloproteinase-16; Short=MMP-16; AltName: Full=Membrane-type matrix metalloproteinase 3; Short=MT-MMP 3; Short=MTMMP3; AltName: Full=Membrane-type-3 matrix metalloproteinase; Short=MT3-MMP; Short=MT3MMP; Flags: Precursor gi|2424975|dbj|BAA22224.1| MT3-MMP [Rattus rattus] Length = 607 Score = 36.7 bits (84), Expect = 7.5, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 47 LQKYGYLPPTDPRMSVLRSAETMQSALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 106 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 107 TRGSSKFNIRRKR 119 >gi|83944388|ref|ZP_00956842.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Sulfitobacter sp. EE-36] gi|83953429|ref|ZP_00962151.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Sulfitobacter sp. NAS-14.1] gi|83842397|gb|EAP81565.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Sulfitobacter sp. NAS-14.1] gi|83844711|gb|EAP82594.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Sulfitobacter sp. EE-36] Length = 183 Score = 36.7 bits (84), Expect = 7.5, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 8/58 (13%) Query: 300 QDPGKINAMA-STKIEFYSRNNTYM--HDTPEPILFNNVVRFETSGCVRV--RNIIDL 352 Q G N + F + +TY H T +P ++ R ++GC+R+ ++ DL Sbjct: 116 QPGGPSNPLGARALYLFQNGRDTYFRIHGTTQPS---SIGRSVSNGCIRMLNEHVKDL 170 >gi|20141616|sp|Q9WTR0|MMP16_MOUSE RecName: Full=Matrix metalloproteinase-16; Short=MMP-16; AltName: Full=Membrane-type matrix metalloproteinase 3; Short=MT-MMP 3; Short=MTMMP3; AltName: Full=Membrane-type-3 matrix metalloproteinase; Short=MT3-MMP; Short=MT3MMP; Flags: Precursor gi|10444090|gb|AAG17704.1|AF282844_1 matrix metalloproteinase 16 [Mus musculus] Length = 607 Score = 36.7 bits (84), Expect = 7.7, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 47 LQKYGYLPPTDPRMSVLRSAETMQSALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 106 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 107 TRGSSKFNIRRKR 119 >gi|288958596|ref|YP_003448937.1| lytic murein transglycosylase [Azospirillum sp. B510] gi|288910904|dbj|BAI72393.1| lytic murein transglycosylase [Azospirillum sp. B510] Length = 425 Score = 36.7 bits (84), Expect = 7.7, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 7/75 (9%) Query: 91 RGGWPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 RG WP R + + L++RL G ++P + A +AV+ FQ G Sbjct: 354 RGSWP----REEQALSKDERI-DLQQRLAALG-MEPGTADGIV-GANTRNAVRRFQASVG 406 Query: 151 LDPSGMVDSSTLEAM 165 P G + L+ + Sbjct: 407 EIPDGFATKALLDRL 421 >gi|146338180|ref|YP_001203228.1| putative ErfK/YbiS/YcfS/YnhG [Bradyrhizobium sp. ORS278] gi|146190986|emb|CAL74991.1| conserved hypothetical protein, putative ErfK/YbiS/YcfS/YnhG precursor [Bradyrhizobium sp. ORS278] Length = 211 Score = 36.7 bits (84), Expect = 7.7, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 6/62 (9%) Query: 290 SPEPPNFIFRQDPGKINAMASTKIEFY--SRNNTY-MHDTPEPILFNNVVRFETSGCVRV 346 + R G N + + I Y +++ Y +H T +P +SGC+R+ Sbjct: 116 QARLGPYPKRVAGGPANPLGARAIYLYEGNKDTLYRIHGTNQPEYIGQ---AISSGCIRM 172 Query: 347 RN 348 N Sbjct: 173 TN 174 >gi|152968159|ref|YP_001363943.1| ATPase AAA [Kineococcus radiotolerans SRS30216] gi|151362676|gb|ABS05679.1| ATPase AAA-2 domain protein [Kineococcus radiotolerans SRS30216] Length = 878 Score = 36.7 bits (84), Expect = 7.8, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 69/206 (33%), Gaps = 33/206 (16%) Query: 40 INESYHSIVNDRFDNFLARVDMGIDSDIPIISKETIAQTEKAIAFYQDILSR--GGWPEL 97 I+E ++ R + + S+ + +A Q+ L+ W + Sbjct: 412 IDELRRAVDRMRMEELALSKEED------AASRNRLETLRAQLADKQEQLTALTARWEQE 465 Query: 98 PIRPLHLGNSSVSVQRLR---ERLIISGDLDPSK----GLSVAFDAYVESAVKLFQ---M 147 +G+ V LR ERL GDL + G A +A + A Q Sbjct: 466 KAGLNRVGDLKHQVDELRSQAERLQREGDLGRASEILYGRIPALEAELRQAQAAEQDAPA 525 Query: 148 RHGLDPSGMVDSSTLE-----AMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPA 202 + + V + +P R L+ ++ + +E+ +G R + Sbjct: 526 QAPMVAD-EVGPDDIAEVIAGWTGIPAG---RILEGETEKLLR-MEEFLGARLIGQTTA- 579 Query: 203 ASLEAVENGKVGLRSTVIVGRVDRQT 228 ++AV + RS V DR T Sbjct: 580 --VQAVSD--AVRRSRAGVNDPDRPT 601 >gi|182680540|ref|YP_001834686.1| lytic murein transglycosylase [Beijerinckia indica subsp. indica ATCC 9039] gi|182636423|gb|ACB97197.1| lytic murein transglycosylase [Beijerinckia indica subsp. indica ATCC 9039] Length = 419 Score = 36.7 bits (84), Expect = 7.9, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 6/72 (8%) Query: 94 WPELPIRPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDP 153 WP G S + ++ L+ G K V A+ FQ RHGL P Sbjct: 352 WPTDD-----PGLSRAERREVQALLMRQGYDLDGKADGVIGTKS-RQAISDFQQRHGLAP 405 Query: 154 SGMVDSSTLEAM 165 +G +S L A+ Sbjct: 406 NGRASASVLAAL 417 >gi|297683237|ref|XP_002819299.1| PREDICTED: matrix metalloproteinase-16-like, partial [Pongo abelii] Length = 449 Score = 36.7 bits (84), Expect = 8.1, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L G L P+ ++SA+ Q +G++ +G VD +T++ M P Sbjct: 252 LQKYGYLPPTDPRMSVLRSAETMQSALAAMQQFYGINMTGKVDRNTIDWMKKP 304 >gi|147807821|emb|CAN73130.1| hypothetical protein VITISV_030258 [Vitis vinifera] Length = 437 Score = 36.7 bits (84), Expect = 8.1, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 8/68 (11%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGL--------SVAFDAYVESAVKLFQMRHGLDPSGMV 157 + + +L++ L G L + FD +ESA+K +Q + L +G + Sbjct: 56 DKVKGIHKLKKYLEQFGYLSYNSHSKNQIRTDDDDYFDDLLESAIKSYQTNYHLKATGKL 115 Query: 158 DSSTLEAM 165 DS T+ M Sbjct: 116 DSETVSEM 123 >gi|94496487|ref|ZP_01303064.1| ErfK/YbiS/YcfS/YnhG [Sphingomonas sp. SKA58] gi|94424233|gb|EAT09257.1| ErfK/YbiS/YcfS/YnhG [Sphingomonas sp. SKA58] Length = 347 Score = 36.7 bits (84), Expect = 8.1, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 8/59 (13%) Query: 301 DPGKINAMASTKIEFYSRNNTY-MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 PG + I+ + Y +H TPEP + R E+ GC+R+ N L + Sbjct: 284 KPGPNGPVGVVWIDLSKDH--YGIHGTPEP---QTIGRTESHGCIRLTNWDAARLAQMV 337 >gi|332671430|ref|YP_004454438.1| peptidoglycan-binding domain 1 protein [Cellulomonas fimi ATCC 484] gi|332340468|gb|AEE47051.1| Peptidoglycan-binding domain 1 protein [Cellulomonas fimi ATCC 484] Length = 353 Score = 36.7 bits (84), Expect = 8.1, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 2/51 (3%) Query: 100 RPLHLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHG 150 R L G+ V RL+ L G D F + + AV F G Sbjct: 122 RVLRPGDQGEDVARLQRFLTGLGLYDGRADG--RFGSALGRAVARFNADAG 170 >gi|255552738|ref|XP_002517412.1| Matrix metalloproteinase, putative [Ricinus communis] gi|223543423|gb|EEF44954.1| Matrix metalloproteinase, putative [Ricinus communis] Length = 321 Score = 36.7 bits (84), Expect = 8.2, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 7/73 (9%) Query: 103 HLGNSSVSVQRLRERLIISGDLDPSKGLSVAFDA-------YVESAVKLFQMRHGLDPSG 155 H G+ V L++ L G L +K S A + +ESA++ +Q+ + L+ SG Sbjct: 45 HKGDKLKGVGELKKYLKHFGYLSYNKNQSHANEDDDDDFDDPLESAIRTYQLNYHLNVSG 104 Query: 156 MVDSSTLEAMNVP 168 ++DS T M +P Sbjct: 105 LLDSETASKMMMP 117 >gi|148673639|gb|EDL05586.1| matrix metallopeptidase 16, isoform CRA_b [Mus musculus] Length = 448 Score = 36.7 bits (84), Expect = 8.2, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 80 LQKYGYLPPTDPRMSVLRSAETMQSALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 139 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 140 TRGSSKFNIRRKR 152 >gi|83745679|ref|ZP_00942737.1| Membrane-bound lytic murein transglycosylase B [Ralstonia solanacearum UW551] gi|83727756|gb|EAP74876.1| Membrane-bound lytic murein transglycosylase B [Ralstonia solanacearum UW551] Length = 427 Score = 36.4 bits (83), Expect = 8.3, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 N++ +QRL+++L G DP + D + A++ +Q H L G S L + Sbjct: 368 NNAADIQRLQQKLTDRGY-DPGTIDGIIGDRT-QQAIRAYQKDHQLPQDGYASRSLLARL 425 >gi|282555166|gb|ADA82682.1| L,D-transpeptidase [Candidatus Blochmannia sayi] Length = 310 Score = 36.4 bits (83), Expect = 8.3, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 39/135 (28%) Query: 196 VLVNIPAASLEAV-ENGKVGLRSTVIVGRVDRQTPI-LHSRINRIMFNPYWVIPRSIIQK 253 +++N L +N + + +G ++ TP + I NP W IP ++ Sbjct: 100 IVINNAEMRLYYYPKNNNTVIVLPIAIGTIENATPSPWRTSIKHKKKNPIW-IPTKNMRD 158 Query: 254 DMMALLRQDPQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKI 313 + + + P G N M S + Sbjct: 159 EYIKHGKTLPAIF----------------------------------PAGPNNPMGSYAL 184 Query: 314 EFYSRNNTYMHDTPE 328 H T Sbjct: 185 YLGXNYAI--HGTNS 197 >gi|198420540|ref|XP_002122510.1| PREDICTED: similar to Serine/threonine-protein kinase Nek1 (NimA-related protein kinase 1) (Renal carcinoma antigen NY-REN-55) [Ciona intestinalis] Length = 1378 Score = 36.4 bits (83), Expect = 8.4, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%) Query: 162 LEAMNVPVDLRIRQLQVNLMRIKKLLEQKMGLRYVLVNIPAASLEAVENGKVG 214 + A+ R + LQ N+ R +++L+ K R N+ A + + Sbjct: 606 IAALQQQAADRAQLLQKNMERRREILDAKDEERKKHGNMAKARGVVHPDERPV 658 >gi|167645239|ref|YP_001682902.1| ErfK/YbiS/YcfS/YnhG family protein [Caulobacter sp. K31] gi|167347669|gb|ABZ70404.1| ErfK/YbiS/YcfS/YnhG family protein [Caulobacter sp. K31] Length = 370 Score = 36.4 bits (83), Expect = 8.4, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 8/64 (12%) Query: 301 DPGKINAMASTKIEFY-SRNNTYMHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWLL 357 G N + ST I+ H TP+P L N R + GCVR+ N +L ++ Sbjct: 303 KAGPNNPVGSTWIDLTKDTYGI--HGTPDPRLVNK--RA-SHGCVRLTNWDAAELGKAVV 357 Query: 358 KDTP 361 K Sbjct: 358 KGAK 361 >gi|121997021|ref|YP_001001808.1| lytic murein transglycosylase [Halorhodospira halophila SL1] gi|121588426|gb|ABM61006.1| lytic murein transglycosylase [Halorhodospira halophila SL1] Length = 395 Score = 36.4 bits (83), Expect = 8.4, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 4/69 (5%) Query: 101 PLHLG---NSSVSVQRLRERLIISGDLDPSKGLSV-AFDAYVESAVKLFQMRHGLDPSGM 156 PL G + + LR+ + +L G +A++ +Q GL G Sbjct: 322 PLRAGFPDDPAPRRSELRQAQEVLNELGFDAGTPDGLLGPRTRAALRAYQQDQGLPADGY 381 Query: 157 VDSSTLEAM 165 D LE + Sbjct: 382 PDPKILERL 390 >gi|85703691|ref|ZP_01034795.1| ErfK/YbiS/YcfS/YnhG family protein [Roseovarius sp. 217] gi|85672619|gb|EAQ27476.1| ErfK/YbiS/YcfS/YnhG family protein [Roseovarius sp. 217] Length = 156 Score = 36.4 bits (83), Expect = 8.4, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 24/94 (25%), Gaps = 24/94 (25%) Query: 266 LKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTYM-- 323 L + K P+ PG N + + Y+ Sbjct: 59 LTRRGYTEVVRKRVGPDWTPTQSMRERDPSLPAYMPPGPGNPLG--------THALYLSW 110 Query: 324 --------HDTPEPILFNNVVRFETSGCVRVRNI 349 HDT + R +SGC+ + N Sbjct: 111 PAYLVHGTHDT------RKIGRQSSSGCIGLYNP 138 >gi|225628068|ref|ZP_03786103.1| ErfK/YbiS/YcfS/YnhG domain protein [Brucella ceti str. Cudo] gi|225616893|gb|EEH13940.1| ErfK/YbiS/YcfS/YnhG domain protein [Brucella ceti str. Cudo] Length = 526 Score = 36.4 bits (83), Expect = 8.5, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 43/151 (28%), Gaps = 45/151 (29%) Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 ENGK+ + +G D + P I+Q + + +P Y + Sbjct: 408 ENGKLVVAYPSTIGSSDNPS------------------PSGIVQVE---RIAINPNYTYN 446 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR-NNTYMHDTP 327 I+ +V PG + + I H TP Sbjct: 447 PKINFKQGNNDKVLTI----------------PPGPNGPVGTVWIALSKPTYGI--HGTP 488 Query: 328 EPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 P + GCVR+ N +L + Sbjct: 489 APSRIGKTS---SHGCVRLTNWDAEELAKLV 516 >gi|309776368|ref|ZP_07671355.1| putative N-acetylmuramoyl-L-alanine amidase [Erysipelotrichaceae bacterium 3_1_53] gi|308915887|gb|EFP61640.1| putative N-acetylmuramoyl-L-alanine amidase [Erysipelotrichaceae bacterium 3_1_53] Length = 168 Score = 36.4 bits (83), Expect = 8.5, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 19/37 (51%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 + + + + V+ FQ + L+ G++ +T +A+ Sbjct: 125 PVDGMYGSRTTTMVQQFQYLYDLNIDGVIGKATWDAI 161 >gi|11968059|ref|NP_071913.1| matrix metalloproteinase-25 preproprotein [Homo sapiens] gi|12585274|sp|Q9NPA2|MMP25_HUMAN RecName: Full=Matrix metalloproteinase-25; Short=MMP-25; AltName: Full=Leukolysin; AltName: Full=Membrane-type matrix metalloproteinase 6; Short=MT-MMP 6; Short=MTMMP6; AltName: Full=Membrane-type-6 matrix metalloproteinase; Short=MT6-MMP; Short=MT6MMP; Flags: Precursor gi|8052552|gb|AAF66697.2|AF145442_1 leukolysin [Homo sapiens] gi|10441358|gb|AAG17007.1|AF185270_1 leukolysin [Homo sapiens] gi|8546817|emb|CAB94713.1| matrix metalloproteinase-25 [Homo sapiens] gi|9798454|emb|CAC03490.1| membrane type matrix metalloproteinase number 6 [Homo sapiens] gi|119605819|gb|EAW85413.1| hCG15613, isoform CRA_a [Homo sapiens] gi|119605821|gb|EAW85415.1| hCG15613, isoform CRA_a [Homo sapiens] gi|189442380|gb|AAI67800.1| Matrix metallopeptidase 25 [synthetic construct] Length = 562 Score = 36.4 bits (83), Expect = 8.5, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P + + A+K+ Q GL +G +D T+ M P Sbjct: 36 LTRYGYLPPPHPAQAQLQSPEKLRDAIKVMQRFAGLPETGRMDPGTVATMRKPRCSLPDV 95 Query: 176 LQVN-LMRIKK 185 L V L+R ++ Sbjct: 96 LGVAGLVRRRR 106 >gi|170749343|ref|YP_001755603.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] gi|170655865|gb|ACB24920.1| ErfK/YbiS/YcfS/YnhG family protein [Methylobacterium radiotolerans JCM 2831] Length = 370 Score = 36.4 bits (83), Expect = 8.6, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 10/65 (15%) Query: 301 DPGKINAMASTKIEF--YSRNNTYMHDTPEPILFNNVVRFETSGCVRVR--NIIDLDVWL 356 G N + I+ H TPEP V + E+ GC+R+ N DL + Sbjct: 306 QSGPNNPVGLVWIDLAIP-SYGI--HGTPEP---EKVGKTESHGCIRLTNWNARDLAAHV 359 Query: 357 LKDTP 361 + Sbjct: 360 TRGAK 364 >gi|163744654|ref|ZP_02152014.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Oceanibulbus indolifex HEL-45] gi|161381472|gb|EDQ05881.1| ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein [Oceanibulbus indolifex HEL-45] Length = 187 Score = 36.4 bits (83), Expect = 8.6, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 6/50 (12%) Query: 300 QDPGKINAMA-STKIEFYSRNNTYM--HDTPEPILFNNVVRFETSGCVRV 346 Q G N + F + +TY H T +P N++ R ++GC+R+ Sbjct: 120 QPGGPGNPLGARALYLFQNGRDTYFRIHGTTQP---NSIGRSVSNGCIRM 166 >gi|45382789|ref|NP_989998.1| matrix metalloproteinase-9 [Gallus gallus] gi|12043935|gb|AAG47650.1|AF222690_1 75 kDa gelatinase [Gallus gallus] Length = 686 Score = 36.4 bits (83), Expect = 8.7, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 28/51 (54%) Query: 118 LIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 L+ G + ++ + + A++ Q + GL+ +G +D+STLEAM P Sbjct: 47 LLRFGYIQEAEVRRSSKHVSLAKALRRMQKQLGLEETGELDASTLEAMRAP 97 >gi|332240134|ref|XP_003269245.1| PREDICTED: matrix metalloproteinase-25 [Nomascus leucogenys] Length = 567 Score = 36.4 bits (83), Expect = 8.8, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P + + A+K+ Q GL +G +D T+ M P Sbjct: 41 LTRYGYLPPPHPAQAQLQSPEKLRDAIKVMQRFAGLPETGRMDPGTVATMRKPRCSLPDV 100 Query: 176 LQVN-LMRIKK 185 L V L+R ++ Sbjct: 101 LGVAGLVRRRR 111 >gi|302876664|ref|YP_003845297.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|307687339|ref|ZP_07629785.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] gi|302579521|gb|ADL53533.1| Peptidoglycan-binding domain 1 protein [Clostridium cellulovorans 743B] Length = 444 Score = 36.4 bits (83), Expect = 9.0, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Query: 98 PIRPLHLGNSSVSVQRLRERL--IISGDLD-PSKGLSVAFDAYVESAVKLFQMRHGLDPS 154 P L +G++ V+ ++ L I + P +S +D + V+ FQ L P+ Sbjct: 329 PGYTLGIGSTGQPVRTVQTFLNRIATNYPALPKVAVSGNYDVNTAAMVRKFQEVFNLQPT 388 Query: 155 GMVDSSTLEAM 165 G+VD ST A+ Sbjct: 389 GVVDYSTWYAI 399 >gi|116495981|ref|YP_807715.1| hypothetical protein LSEI_2550 [Lactobacillus casei ATCC 334] gi|239630380|ref|ZP_04673411.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067531|ref|YP_003789554.1| hypothetical protein LCAZH_2513 [Lactobacillus casei str. Zhang] gi|116106131|gb|ABJ71273.1| peptidoglycan transpeptidase precursor, ErfK-YbiS-YhnG family [Lactobacillus casei ATCC 334] gi|239526663|gb|EEQ65664.1| conserved hypothetical protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439938|gb|ADK19704.1| conserved hypothetical protein [Lactobacillus casei str. Zhang] Length = 456 Score = 36.4 bits (83), Expect = 9.0, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 21/40 (52%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 +G YV V+ +++GKV + S ++ G+ + TP Sbjct: 329 DIGNTYVEVSKEKQHEWYIKDGKVVMDSDIVTGKPGQDTP 368 >gi|227533041|ref|ZP_03963090.1| ErfK family protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189442|gb|EEI69509.1| ErfK family protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 483 Score = 36.4 bits (83), Expect = 9.0, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 21/40 (52%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 +G YV V+ +++GKV + S ++ G+ + TP Sbjct: 356 DIGNTYVEVSKEKQHEWYIKDGKVVMDSDIVTGKPGQDTP 395 >gi|302531703|ref|ZP_07284045.1| predicted protein [Streptomyces sp. AA4] gi|302440598|gb|EFL12414.1| predicted protein [Streptomyces sp. AA4] Length = 220 Score = 36.4 bits (83), Expect = 9.1, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 7/51 (13%) Query: 186 LLEQKMG------LRYVL-VNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 L + YVL V+ A LE V++G TV VG+ TP Sbjct: 86 WLYRDDPRVDEARTPYVLRVDRAAYRLELVKDGATVRTWTVGVGKPVSPTP 136 >gi|191639460|ref|YP_001988626.1| hypothetical protein LCABL_27170 [Lactobacillus casei BL23] gi|190713762|emb|CAQ67768.1| Putative uncharacterized protein [Lactobacillus casei BL23] gi|205270979|emb|CAP07852.1| hypothetical protein [Lactobacillus casei BL23] gi|327383554|gb|AEA55030.1| ErfK/YbiS/YcfS/YnhG family protein [Lactobacillus casei LC2W] gi|327386745|gb|AEA58219.1| ErfK/YbiS/YcfS/YnhG family protein [Lactobacillus casei BD-II] Length = 456 Score = 36.4 bits (83), Expect = 9.1, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 21/40 (52%) Query: 190 KMGLRYVLVNIPAASLEAVENGKVGLRSTVIVGRVDRQTP 229 +G YV V+ +++GKV + S ++ G+ + TP Sbjct: 329 DIGNTYVEVSKEKQHEWYIKDGKVVMDSDIVTGKPGQDTP 368 >gi|18158443|ref|NP_542954.1| matrix metalloproteinase-16 [Rattus norvegicus] gi|2424973|dbj|BAA22223.1| MT3-MMP-del [Rattus sp.] Length = 547 Score = 36.4 bits (83), Expect = 9.2, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%) Query: 118 LIISGDLDPSKGLSVAF--DAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP----VDL 171 L G L P+ ++SA+ Q +G++ +G VD +T++ M P D Sbjct: 47 LQKYGYLPPTDPRMSVLRSAETMQSALAAMQQFYGINMTGKVDRNTIDWMKKPRCGVPDQ 106 Query: 172 RIRQLQVNLMRIK 184 + N+ R + Sbjct: 107 TRGSSKFNIRRKR 119 >gi|154295978|ref|XP_001548422.1| predicted protein [Botryotinia fuckeliana B05.10] gi|150843794|gb|EDN18987.1| predicted protein [Botryotinia fuckeliana B05.10] Length = 353 Score = 36.4 bits (83), Expect = 9.3, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 23/56 (41%) Query: 330 ILFNNVVRFETSGCVRVRNIIDLDVWLLKDTPTWSRYHIEEVVKTRKTTPVKLATE 385 L + RF++S V + +L +TP +++ +K +KT + Sbjct: 217 DLLDRYRRFQSSSVTPVSQPDKIPQTVLAETPNKEIGDLKKALKEKKTRSQWFKKQ 272 >gi|148683759|gb|EDL15706.1| matrix metallopeptidase 28 (epilysin), isoform CRA_c [Mus musculus] Length = 529 Score = 36.4 bits (83), Expect = 9.3, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 10/104 (9%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRER----LIISGDL 124 + + +A ++ L W +P G + LR+ L G L Sbjct: 25 TTTPQQLAAMVAGVSLLLRALPLLLWGCQDAQPTQHG-----LPELRQEAEAFLEKYGYL 79 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + A A +A++ FQ L SG++D +TL M P Sbjct: 80 SEQGSKAPA-SAQFRNAIREFQWISQLPLSGVLDQATLRQMTRP 122 >gi|148683760|gb|EDL15707.1| matrix metallopeptidase 28 (epilysin), isoform CRA_d [Mus musculus] Length = 543 Score = 36.4 bits (83), Expect = 9.3, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 10/104 (9%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRER----LIISGDL 124 + + +A ++ L W +P G + LR+ L G L Sbjct: 25 TTTPQQLAAMVAGVSLLLRALPLLLWGCQDAQPTQHG-----LPELRQEAEAFLEKYGYL 79 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + A A +A++ FQ L SG++D +TL M P Sbjct: 80 SEQGSKAPA-SAQFRNAIREFQWISQLPLSGVLDQATLRQMTRP 122 >gi|227509795|ref|ZP_03939844.1| periplasmic protease [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190719|gb|EEI70786.1| periplasmic protease [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 344 Score = 36.4 bits (83), Expect = 9.4, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Query: 134 FDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 ++ AV+ FQ RH L +G V+ +T + Sbjct: 149 YNQATYHAVRQFQSRHHLKVTGNVNEAT--WL 178 >gi|218677376|ref|ZP_03525273.1| ErfK/YbiS/YcfS/YnhG family protein [Rhizobium etli CIAT 894] Length = 220 Score = 36.4 bits (83), Expect = 9.4, Method: Composition-based stats. Identities = 23/156 (14%), Positives = 48/156 (30%), Gaps = 44/156 (28%) Query: 204 SLEAVEN-GKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQD 262 + A ++ G + +G D +P + R+ FNP + + Sbjct: 96 QVFAYDSAGNLLAAYPASIGSTDTPSPSGTVTVERVAFNPGYT---------YNPKI--- 143 Query: 263 PQYLKDNNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSRNNTY 322 + + N +++ W + P + Sbjct: 144 -NFQQGANDKILNIPPGPNGPVGTVWMALSKPTYG------------------------- 177 Query: 323 MHDTPEPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 +H TPEP + R ++ GC+R+ N +L + Sbjct: 178 IHGTPEPS---KIGRTQSHGCIRLTNWDATELAQMV 210 >gi|206599740|ref|YP_002241929.1| gp34 [Mycobacterium phage Gumball] gi|206282954|gb|ACI06408.1| gp34 [Mycobacterium phage Gumball] Length = 327 Score = 36.4 bits (83), Expect = 9.4, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERL--IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L +G+ V +++ + + F A + AV FQ R +D G V Sbjct: 178 LRIGSEGPEVLKMQRGMNSVFKNYRAMPLLEDGIFGAKTKEAVVEFQQRSLIDVDGEVGP 237 Query: 160 STLEAM 165 T + Sbjct: 238 QTKAKL 243 >gi|269126589|ref|YP_003299959.1| glycoside hydrolase family 25 [Thermomonospora curvata DSM 43183] gi|268311547|gb|ACY97921.1| glycoside hydrolase family 25 [Thermomonospora curvata DSM 43183] Length = 297 Score = 36.4 bits (83), Expect = 9.5, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 12/36 (33%) Query: 129 GLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEA 164 + E + FQ GL G+V T A Sbjct: 255 AADGWYGPASERVCRAFQAEKGLAVDGVVGPVTWRA 290 >gi|109522603|ref|YP_655415.1| gp36 [Mycobacterium phage PLot] gi|109522811|ref|YP_655231.1| gp35 [Mycobacterium phage PBI1] gi|189043188|ref|YP_001936127.1| gp36 [Mycobacterium phage Adjutor] gi|206599654|ref|YP_002241533.1| gp35 [Mycobacterium phage Butterscotch] gi|88910524|gb|ABD58451.1| gp35 [Mycobacterium phage PBI1] gi|88910710|gb|ABD58635.1| gp36 [Mycobacterium phage PLot] gi|188090839|gb|ACD49621.1| gp36 [Mycobacterium phage Adjutor] gi|206282836|gb|ACI06323.1| gp35 [Mycobacterium phage Butterscotch] Length = 327 Score = 36.4 bits (83), Expect = 9.5, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERL--IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L +G+ V +++ + + F A + AV FQ R +D G V Sbjct: 178 LRIGSEGPEVLKMQRGMNSVFKNYRAMPLLEDGIFGAKTKEAVVEFQQRSLIDVDGEVGP 237 Query: 160 STLEAM 165 T + Sbjct: 238 QTKAKL 243 >gi|330823136|ref|YP_004386439.1| peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans K601] gi|329308508|gb|AEB82923.1| Peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans K601] Length = 563 Score = 36.4 bits (83), Expect = 9.6, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 17/36 (47%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 V FQ+ GL P G TL +N ++ +L+ Sbjct: 525 VHQFQLGQGLTPDGQAGPLTLMLLNRAAGVQEPRLR 560 >gi|319761269|ref|YP_004125206.1| peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans BC] gi|317115830|gb|ADU98318.1| Peptidoglycan-binding domain 1 protein [Alicycliphilus denitrificans BC] Length = 563 Score = 36.4 bits (83), Expect = 9.6, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 17/36 (47%) Query: 142 VKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQLQ 177 V FQ+ GL P G TL +N ++ +L+ Sbjct: 525 VHQFQLGQGLTPDGQAGPLTLMLLNRAAGVQEPRLR 560 >gi|237816230|ref|ZP_04595223.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus str. 2308 A] gi|237788297|gb|EEP62512.1| ErfK/YbiS/YcfS/YnhG family protein [Brucella abortus str. 2308 A] Length = 526 Score = 36.4 bits (83), Expect = 9.6, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 45/151 (29%), Gaps = 45/151 (29%) Query: 209 ENGKVGLRSTVIVGRVDRQTPILHSRINRIMFNPYWVIPRSIIQKDMMALLRQDPQYLKD 268 ENGK+ + +G D + P I+Q + + +P Y + Sbjct: 408 ENGKLVVAYPSTIGSSDNPS------------------PSGIVQVE---RIAINPNYTYN 446 Query: 269 NNIHMIDEKGKEVFVEEVDWNSPEPPNFIFRQDPGKINAMASTKIEFYSR-NNTYMHDTP 327 I+ +V PG + + I H TP Sbjct: 447 PKINFKQGNNDKVLTI----------------PPGPNGPVGTVWIALSKPTYGI--HGTP 488 Query: 328 EPILFNNVVRFETSGCVRVRN--IIDLDVWL 356 P + + + GCVR+ N +L + Sbjct: 489 APS---RIGKISSHGCVRLTNWDAEELAKLV 516 >gi|332845157|ref|XP_001165615.2| PREDICTED: matrix metalloproteinase-25 [Pan troglodytes] Length = 562 Score = 36.4 bits (83), Expect = 9.7, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%) Query: 118 LIISGDLDPSKGLSVAFDAY--VESAVKLFQMRHGLDPSGMVDSSTLEAMNVPVDLRIRQ 175 L G L P + + A+K+ Q GL +G +D T+ M+ P Sbjct: 36 LTRYGYLPPPHPAQAQLQSPEKLRDAIKVMQRFAGLPETGRMDPGTVATMHKPRCSLPDV 95 Query: 176 LQVN-LMRIKK 185 L V L+R ++ Sbjct: 96 LGVAGLVRRRR 106 >gi|206599830|ref|YP_002241449.1| gp35 [Mycobacterium phage Troll4] gi|206283072|gb|ACI06497.1| gp35 [Mycobacterium phage Troll4] Length = 327 Score = 36.4 bits (83), Expect = 9.7, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 2/66 (3%) Query: 102 LHLGNSSVSVQRLRERL--IISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDS 159 L +G+ V +++ + + F A + AV FQ R +D G V Sbjct: 178 LRIGSEGPEVLKMQRGMNSVFKNYRAMPLLEDGIFGAKTKEAVVEFQQRSLIDVDGEVGP 237 Query: 160 STLEAM 165 T + Sbjct: 238 QTKAKL 243 >gi|148683761|gb|EDL15708.1| matrix metallopeptidase 28 (epilysin), isoform CRA_e [Mus musculus] Length = 553 Score = 36.4 bits (83), Expect = 9.7, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 10/104 (9%) Query: 69 IISKETIAQTEKAIAFYQDILSRGGWPELPIRPLHLGNSSVSVQRLRER----LIISGDL 124 + + +A ++ L W +P G + LR+ L G L Sbjct: 25 TTTPQQLAAMVAGVSLLLRALPLLLWGCQDAQPTQHG-----LPELRQEAEAFLEKYGYL 79 Query: 125 DPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAMNVP 168 + A A +A++ FQ L SG++D +TL M P Sbjct: 80 SEQGSKAPA-SAQFRNAIREFQWISQLPLSGVLDQATLRQMTRP 122 >gi|207724810|ref|YP_002255207.1| membrane-bound lytic murein transglycosylase b protein [Ralstonia solanacearum MolK2] gi|206590035|emb|CAQ36996.1| membrane-bound lytic murein transglycosylase b protein [Ralstonia solanacearum MolK2] Length = 390 Score = 36.4 bits (83), Expect = 9.8, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 106 NSSVSVQRLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 N++ +QRL+++L G DP + D + A++ +Q H L G S L + Sbjct: 331 NNAADIQRLQQKLTDRGY-DPGTIDGIIGDRT-QQAIRAYQKDHQLPQDGYASRSLLARL 388 >gi|110635074|ref|YP_675282.1| lytic murein transglycosylase [Mesorhizobium sp. BNC1] gi|110286058|gb|ABG64117.1| lytic murein transglycosylase [Chelativorans sp. BNC1] Length = 407 Score = 36.4 bits (83), Expect = 9.9, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 2/53 (3%) Query: 113 RLRERLIISGDLDPSKGLSVAFDAYVESAVKLFQMRHGLDPSGMVDSSTLEAM 165 L++RL G + V A++ FQ R GL G L + Sbjct: 354 ELQKRLGTLGYYEGEIDGKVG--QASREAIRAFQSRMGLAQDGHPSKEVLNVL 404 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.313 0.157 0.510 Lambda K H 0.267 0.0477 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,373,497,837 Number of Sequences: 14124377 Number of extensions: 459855841 Number of successful extensions: 1159478 Number of sequences better than 10.0: 4355 Number of HSP's better than 10.0 without gapping: 3413 Number of HSP's successfully gapped in prelim test: 1840 Number of HSP's that attempted gapping in prelim test: 1146866 Number of HSP's gapped (non-prelim): 7213 length of query: 431 length of database: 4,842,793,630 effective HSP length: 142 effective length of query: 289 effective length of database: 2,837,132,096 effective search space: 819931175744 effective search space used: 819931175744 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 83 (36.4 bits)